BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13234
(1192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 280 bits (716), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/243 (59%), Positives = 174/243 (71%), Gaps = 35/243 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SGAGKSTI+RLLFRFYD+ SG I ID Q+I V+QASLR IGVVPQDTVLFN++I
Sbjct: 86 VGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIA 145
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI+Y R+ A +EV+ AA +A IH+
Sbjct: 146 DNIRYGRVT----------------------------------AGNDEVEAAAQAAGIHD 171
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I++FP+GY TQVGERGLKLSGGEKQRVAIART+LKAP I+LLDEATSALDT ER IQ+
Sbjct: 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW-IQQN 1174
+L +VCA+RTTI+VAHRLST+++AD+ILV+ G IVERGRHE LL R GVYA MW +QQ
Sbjct: 232 SLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG 291
Query: 1175 TKQ 1177
++
Sbjct: 292 QEE 294
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 563 MALYLG-KNTVGERGLKLSGGEKQRVAIA 590
MA G + VGERGLKLSGGEKQRVAIA
Sbjct: 174 MAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 236 bits (602), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 179/543 (32%), Positives = 274/543 (50%), Gaps = 72/543 (13%)
Query: 644 EIEIELFRHLHGLSLRWHLSRKTGEVL-RVMNRGTDSISNLLNYVLFQIIPTILD----- 697
+I +L+ HL LS R++ + + G+V+ RV+N + +++L ++ LD
Sbjct: 95 DIRKKLYNHLQALSARFYANNQVGQVISRVIN----DVEQTKDFILTGLMNIWLDCITII 150
Query: 698 IVIAIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSL 757
I ++I+FF+ T + +F Y++T V K R+ + A + + +
Sbjct: 151 IALSIMFFLDVKLTLAALFIF---PFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERV 207
Query: 758 LNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQ----NSLSLVFLNSLQNL--IITGGLLA 811
VK + E+ E K + K + + N+ S +N++ ++ II G+
Sbjct: 208 QGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGV-- 265
Query: 812 GSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKEC 871
G+ L + + ++TVG FV Y+ L+ PL R L AS L ++ A
Sbjct: 266 GAYLAI-----SGSITVGTLAAFVGYLELLFGPL-------RRLVASFTTL-TQSFASMD 312
Query: 872 RTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVW 931
R I + + IE K + ++ D F+ + + + + + V
Sbjct: 313 RVFQLIDEDYDIKNGVGAQPIEIK-QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVA 371
Query: 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 991
+ VG SG GKST+I L+ RFYDV SG I ID NIK SLR IG+V QD +LF+
Sbjct: 372 F---VGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 428
Query: 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+++K NI R P A++EEV EAA A
Sbjct: 429 DTVKENILLGR------------------------P----------TATDEEVVEAAKMA 454
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ H+ I++ P GYDT+VGERG+KLSGG+KQR++IAR L P I++LDEATSALD ++E
Sbjct: 455 NAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES 514
Query: 1112 NIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171
IQ AL+ + RTT+IVAHRLSTI HAD+I+V+ G IVE G H EL+ + G Y ++
Sbjct: 515 IIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 574
Query: 1172 QQN 1174
QN
Sbjct: 575 IQN 577
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLV 600
M L G +T VGERG+KLSGG+KQR++IA L + P++
Sbjct: 461 MNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 499
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 156/239 (65%), Gaps = 35/239 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +G+GKSTI +LL+RFYD E GDI I +N+ ++ S+R IG+VPQDT+LFN +IK
Sbjct: 52 VGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+NI Y +++ A++EEV +A SA +++
Sbjct: 111 YNILYGKLD----------------------------------ATDEEVIKATKSAQLYD 136
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I + P +DT VG +G+KLSGGE+QR+AIAR LLK P+IV+ DEATS+LD+KTE Q
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174
A+ + +RT II+AHRLSTI A+ I++++ G+IVE+G H++LL+ NG YA MW Q+
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQS 255
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLV 600
VG +G+KLSGGE+QR+AIA L D +V
Sbjct: 149 VGNKGMKLSGGERQRIAIARCLLKDPKIV 177
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 206 bits (525), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 160/535 (29%), Positives = 263/535 (49%), Gaps = 69/535 (12%)
Query: 649 LFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVST 708
LF H+ G+ + + + TG +L + ++ +++ + L ++ I+ +F +
Sbjct: 104 LFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIG--LFIMMF 161
Query: 709 FSTWYGVIVFTTMALYLVTSIVVTEWRTK-FQRKMNLADNALNTRSIDSLLNFETVKYYG 767
+ +W I+ +A + +I V R + + M + T + L + V +G
Sbjct: 162 YYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFG 221
Query: 768 AEEYEIKEYGKAIQTYQVAEYQ----NSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNN 823
+E E K + K ++ + +S+S + + +L + L A S V +
Sbjct: 222 GQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMD---- 277
Query: 824 QTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTISCI--CHLT 881
+LT G T+ S ++ L PL + + + C+T+ I
Sbjct: 278 -SLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAA---------CQTLFTILDSEQE 327
Query: 882 KAVTRIVLKRIENKIEENMEEDQFGFRKGKGT---RDAIGCLRMIALESQLVWYLLQVGQ 938
K + V++R +E FR T RD + LR I L+ + VG+
Sbjct: 328 KDEGKRVIERATGDVE---------FRNVTFTYPGRD-VPALRNINLKIPAGKTVALVGR 377
Query: 939 SGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNI 998
SG+GKSTI L+ RFYD++ G+I +D +++ + ASLR + +V Q+ LFN+++ NI
Sbjct: 378 SGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI 437
Query: 999 QYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058
YAR QY+R E+++EAA A + I
Sbjct: 438 AYARTE----------------------------QYSR-----EQIEEAARMAYAMDFIN 464
Query: 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN 1118
+G DT +GE G+ LSGG++QR+AIAR LL+ I++LDEATSALDT++ER IQ+AL+
Sbjct: 465 KMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 1119 RVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
+ +RT++++AHRLSTI ADEI+V+ G IVERG H +LLE GVYA + Q
Sbjct: 525 ELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVF 601
+GE G+ LSGG++QR+AIA L D P++
Sbjct: 474 IGENGVLLSGGQRQRIAIARALLRDSPILI 503
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 156/530 (29%), Positives = 265/530 (50%), Gaps = 67/530 (12%)
Query: 649 LFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIV--IAIVFFV 706
LF H + +R+ TG +L + ++ ++ + L I+ I+ + ++F+
Sbjct: 104 LFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFW- 162
Query: 707 STFSTWYGVIVFTTMALYLVTSIVVTEWR-TKFQRKMNLADNALNTRSIDSLLNFETVKY 765
++W +V +A + +I R K R M A + + + L + V
Sbjct: 163 ---NSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLS 219
Query: 766 YGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQN----LIITGGLLAGSLLCVHEVV 821
YG +E E K + K + + Q ++ LV S+ + +I + L A L + +
Sbjct: 220 YGGQEVERKRFDKVSNSMR----QQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSI 275
Query: 822 NNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTISCICHLT 881
+ LT G +T+ S + L PL ++T + + C+T+ + L
Sbjct: 276 RAE-LTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAA---------CQTLFGLMDLE 325
Query: 882 --KAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQS 939
+ + +R+ ++ ++++ F + +GK + A+ + + + V VG+S
Sbjct: 326 TERDNGKYEAERVNGEV--DVKDVTFTY-QGK-EKPALSHVSFSIPQGKTVAL---VGRS 378
Query: 940 GAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQ 999
G+GKSTI L RFYDV+SG I +D +++ +LR+ +V Q+ LFN++I NI
Sbjct: 379 GSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIA 438
Query: 1000 YARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059
YA + +Y R E++++AA A E I +
Sbjct: 439 YA----------------------------AEGEYTR-----EQIEQAARQAHAMEFIEN 465
Query: 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR 1119
P G DT +GE G LSGG++QRVAIAR LL+ +++LDEATSALDT++ER IQ+AL+
Sbjct: 466 MPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525
Query: 1120 VCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
+ ++T +++AHRLSTI ADEILV+ GEI+ERGRH +LL ++G YA +
Sbjct: 526 LQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLV 600
+GE G LSGG++QRVAIA L D P++
Sbjct: 474 IGENGTSLSGGQRQRVAIARALLRDAPVL 502
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 158/531 (29%), Positives = 265/531 (49%), Gaps = 61/531 (11%)
Query: 649 LFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVST 708
LF H+ G+ + + + TG +L + ++ +++ + L ++ I+ +F +
Sbjct: 104 LFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIG--LFIMMF 161
Query: 709 FSTWYGVIVFTTMALYLVTSIVVTEWRTK-FQRKMNLADNALNTRSIDSLLNFETVKYYG 767
+ +W I+ +A + +I V R + + M + T + L + V +G
Sbjct: 162 YYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFG 221
Query: 768 AEEYEIKEYGKAIQTYQVAEYQ----NSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNN 823
+E E K + K ++ + +S+S + + +L + L A S V +
Sbjct: 222 GQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMD---- 277
Query: 824 QTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTISCICHLTKA 883
+LT G T+ S ++ L PL + + + C+T+ I L
Sbjct: 278 -SLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAA---------CQTLFAI--LDSE 325
Query: 884 VTRIVLKRIENKIEENMEEDQFGFR-KGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAG 942
+ KR+ ++ ++E F G+ + LR I L+ + VG+SG+G
Sbjct: 326 QEKDEGKRVIDRATGDLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 943 KSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYAR 1002
KSTI L+ RFYD++ G I +D +++ + ASLR + +V Q+ LFN+++ NI YAR
Sbjct: 382 KSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 441
Query: 1003 INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
+EE Y+R E+++EAA A + I +
Sbjct: 442 ---TEE-------------------------YSR-----EQIEEAARMAYAMDFINKMDN 468
Query: 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122
G DT +GE G+ LSGG++QR+AIAR LL+ I++LDEATSALDT++ER IQ+AL+ +
Sbjct: 469 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528
Query: 1123 SRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
+RT++++AHRLSTI ADEI+V+ G IVERG H ELL ++GVYA + Q
Sbjct: 529 NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVF 601
+GE G+ LSGG++QR+AIA L D P++
Sbjct: 474 IGENGVLLSGGQRQRIAIARALLRDSPILI 503
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 162/257 (63%), Gaps = 32/257 (12%)
Query: 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS 972
TR +I L+ ++LE + L VG SG GKST+++LL RFYD +G +F+D + IK ++
Sbjct: 1042 TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN 1101
Query: 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDT 1032
LR +G+V Q+ +LF+ SI NI Y + R++S+
Sbjct: 1102 VQWLRAQLGIVSQEPILFDCSIAENIAYGD-----------------NSRVVSY------ 1138
Query: 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKA 1092
EE+ AA A+IH+ I S PD Y+T+VG++G +LSGG+KQR+AIAR L++
Sbjct: 1139 ---------EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 1093 PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVE 1152
P I+LLDEATSALDT++E+ +Q AL++ RT I++AHRLSTI +AD I+V+ G++ E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 1153 RGRHEELLERNGVYASM 1169
G H++LL + G+Y SM
Sbjct: 1250 HGTHQQLLAQKGIYFSM 1266
Score = 186 bits (471), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 156/261 (59%), Gaps = 34/261 (13%)
Query: 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS 972
+R + L+ + L+ + + VG SG GKST ++L+ R YD G + ID Q+I+T++
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDT 1032
LR+ IGVV Q+ VLF +I NI+Y R + + +E+
Sbjct: 459 VRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI---------------------- 496
Query: 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKA 1092
E+ VKEA + ++ I+ P +DT VGERG +LSGG+KQR+AIAR L++
Sbjct: 497 --------EKAVKEA----NAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544
Query: 1093 PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVE 1152
P+I+LLDEATSALDT++E +Q+AL++ RTTI++AHRLST+ +AD I G IVE
Sbjct: 545 PKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604
Query: 1153 RGRHEELLERNGVYASMWIQQ 1173
+G H+EL+ G+Y + + Q
Sbjct: 605 QGNHDELMREKGIYFKLVMTQ 625
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
VGERG +LSGG+KQR+AIA +LV P + D
Sbjct: 520 VGERGAQLSGGQKQRIAIA-RALVRNPKILLLD 551
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
VG++G +LSGG+KQR+AIA +LV +P + D
Sbjct: 1165 VGDKGTQLSGGQKQRIAIA-RALVRQPHILLLD 1196
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 162/257 (63%), Gaps = 32/257 (12%)
Query: 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS 972
TR +I L+ ++LE + L VG SG GKST+++LL RFYD +G +F+D + IK ++
Sbjct: 1042 TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN 1101
Query: 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDT 1032
LR +G+V Q+ +LF+ SI NI Y + R++S+
Sbjct: 1102 VQWLRAQLGIVSQEPILFDCSIAENIAYGD-----------------NSRVVSY------ 1138
Query: 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKA 1092
EE+ AA A+IH+ I S PD Y+T+VG++G +LSGG+KQR+AIAR L++
Sbjct: 1139 ---------EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 1093 PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVE 1152
P I+LLDEATSALDT++E+ +Q AL++ RT I++AHRLSTI +AD I+V+ G++ E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 1153 RGRHEELLERNGVYASM 1169
G H++LL + G+Y SM
Sbjct: 1250 HGTHQQLLAQKGIYFSM 1266
Score = 186 bits (471), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 156/261 (59%), Gaps = 34/261 (13%)
Query: 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS 972
+R + L+ + L+ + + VG SG GKST ++L+ R YD G + ID Q+I+T++
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDT 1032
LR+ IGVV Q+ VLF +I NI+Y R + + +E+
Sbjct: 459 VRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI---------------------- 496
Query: 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKA 1092
E+ VKEA + ++ I+ P +DT VGERG +LSGG+KQR+AIAR L++
Sbjct: 497 --------EKAVKEA----NAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544
Query: 1093 PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVE 1152
P+I+LLDEATSALDT++E +Q+AL++ RTTI++AHRLST+ +AD I G IVE
Sbjct: 545 PKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604
Query: 1153 RGRHEELLERNGVYASMWIQQ 1173
+G H+EL+ G+Y + + Q
Sbjct: 605 QGNHDELMREKGIYFKLVMTQ 625
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
VGERG +LSGG+KQR+AIA +LV P + D
Sbjct: 520 VGERGAQLSGGQKQRIAIA-RALVRNPKILLLD 551
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
VG++G +LSGG+KQR+AIA +LV +P + D
Sbjct: 1165 VGDKGTQLSGGQKQRIAIA-RALVRQPHILLLD 1196
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 199 bits (505), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 149/531 (28%), Positives = 258/531 (48%), Gaps = 60/531 (11%)
Query: 648 ELFRHLHGLSLRWHLSRKTGEVL-RVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFV 706
ELF L + + + G+++ RV+N D+I+N+L + Q I+ + A++
Sbjct: 115 ELFEKLQRVPVGFFDRTPHGDIISRVIN-DVDNINNVLGNSIIQFFSGIVTLAGAVIMMF 173
Query: 707 STFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYY 766
V + L+T IV ++ R F + LN + + +K +
Sbjct: 174 RVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVL-GQLNGIIEEDISGLTVIKLF 232
Query: 767 GAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLA----GSLLCVHEVVN 822
EE E++++ + ++ + + + L L N++ G G L + +++
Sbjct: 233 TREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDII- 291
Query: 823 NQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTISCICHLTK 882
TVG F+ Y Q PLN ++ +L +A+ I +
Sbjct: 292 ----TVGTIATFIGYSRQFTRPLNELSNQFNMIQMAL------ASAERIFEILDLEEEKD 341
Query: 883 AVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAG 942
+ L+ + +IE + F + K K L+ I + + VG +G+G
Sbjct: 342 DPDAVELREVRGEIE--FKNVWFSYDKKKP------VLKDITFHIKPGQKVALVGPTGSG 393
Query: 943 KSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYAR 1002
K+TI+ LL RFYDV+ G I +D +I+ + ++SLR +IG+V QDT+LF+ ++K N++Y
Sbjct: 394 KTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN 453
Query: 1003 INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
P A++EE+KEAA I P+
Sbjct: 454 ------------------------P----------GATDEEIKEAAKLTHSDHFIKHLPE 479
Query: 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122
GY+T + + G LS G++Q +AI R L P+I++LDEATS +DTKTE++IQ+A+ ++
Sbjct: 480 GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME 539
Query: 1123 SRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
+T+II+AHRL+TI +AD I+V+ GEIVE G+H+EL+++ G Y ++ Q
Sbjct: 540 GKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 155/264 (58%), Gaps = 32/264 (12%)
Query: 914 RDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973
R I L+ ++ + L VG SG GKST++ LL RFYD G+IFID IKT++
Sbjct: 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNP 1148
Query: 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQ 1033
R I +V Q+ LF+ SI NI Y G D
Sbjct: 1149 EHTRSQIAIVSQEPTLFDCSIAENIIY----------------------------GLDPS 1180
Query: 1034 YARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAP 1093
+ + +V+EAA A+IH I P+G++T+VG+RG +LSGG+KQR+AIAR L++ P
Sbjct: 1181 ----SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNP 1236
Query: 1094 QIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER 1153
+I+LLDEATSALDT++E+ +Q AL+R RT I++AHRL+T+++AD I V+ G I+E+
Sbjct: 1237 KILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEK 1296
Query: 1154 GRHEELLERNGVYASMWIQQNTKQ 1177
G H +L+ G Y + +Q T++
Sbjct: 1297 GTHTQLMSEKGAYYKLTQKQMTEK 1320
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 146/261 (55%), Gaps = 34/261 (13%)
Query: 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS 972
+R + LR + L + VG SG GKSTII LL R+YDV G I ID +++ ++
Sbjct: 427 SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN 486
Query: 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDT 1032
LR+ + VV Q+ LFN +I+ NI KE T
Sbjct: 487 LEFLRKNVAVVSQEPALFNCTIEENISLG---------KEGIT----------------- 520
Query: 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKA 1092
EE+ A A+ + I + P+GY+T VG+RG +LSGG+KQR+AIAR L++
Sbjct: 521 --------REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN 572
Query: 1093 PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVE 1152
P+I+LLDEATSALD ++E +Q AL++ RTTII+AHRLSTI +AD I+ G++VE
Sbjct: 573 PKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVE 632
Query: 1153 RGRHEELLERNGVYASMWIQQ 1173
G H L+ + G+Y + Q
Sbjct: 633 VGDHRALMAQQGLYYDLVTAQ 653
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G NT VG+RG +LSGG+KQR+AIA +LV P + D
Sbjct: 543 GYNTLVGDRGTQLSGGQKQRIAIA-RALVRNPKILLLD 579
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
VG+RG +LSGG+KQR+AIA +LV P + D
Sbjct: 1211 VGDRGTQLSGGQKQRIAIA-RALVRNPKILLLD 1242
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 150/545 (27%), Positives = 263/545 (48%), Gaps = 86/545 (15%)
Query: 648 ELFRHLHGLSL----RWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVI-AI 702
+LFR + S+ R+H S ++ R T+ ++ L N V+ +L IV+ A
Sbjct: 101 DLFRKVLSFSISNVNRFHTSS-------LITRLTNDVTQLQNLVMM-----LLRIVVRAP 148
Query: 703 VFFVSTFSTWYGVIV-FTTMALYLVTSIVVT-EWRTK----FQRKMNLADNALNTRSIDS 756
+ FV + V +++ ++L+ IV+ W TK RK+ + + +N ++
Sbjct: 149 LLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVREN 208
Query: 757 LLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLA----G 812
LL V+ + EEYE + + KA ++ + + +VF L I+ G++A G
Sbjct: 209 LLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFG 268
Query: 813 SLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECR 872
+L V N + +G + +Y++Q+ L + ++ + +A R
Sbjct: 269 GVL-----VRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFI--------VRASASAKR 315
Query: 873 TISCICH---LTKAVTRIVLKRIENKIE-ENMEEDQFGFRKGKGTRDAIGCLRMIALESQ 928
+ + + +A + L +E + EN+E FR + T + +
Sbjct: 316 VLEVLNEKPAIEEADNALALPNVEGSVSFENVE-----FRYFENTDPVLSGVNFSVKPGS 370
Query: 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV 988
LV L G++G+GKST++ L+ R D E G + +D +++TV LR I VPQ+TV
Sbjct: 371 LVAVL---GETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
LF+ +IK N+++ R +A+++E+ EAA A IH+ I+S P+GYD++ R
Sbjct: 428 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER------------ 475
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
G SGG+KQR++IAR L+K P++++LD+ TS++D
Sbjct: 476 ----------------------GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513
Query: 1109 TERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYAS 1168
TE+ I L R TT I+ ++ T + AD+ILV+H G++ G H+ELLE Y
Sbjct: 514 TEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYRE 573
Query: 1169 MWIQQ 1173
++ Q
Sbjct: 574 IYESQ 578
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 144/240 (60%), Gaps = 32/240 (13%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKST++ LL R YD SG I +D +I+ ++ LR IG V Q+ +LF+ SI
Sbjct: 376 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIA 435
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y + S + + EE++ A A+
Sbjct: 436 ENIAYGADDPS-------------------------------SVTAEEIQRVAEVANAVA 464
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I +FP G++T VGE+G+ LSGG+KQR+AIAR LLK P+I+LLDEATSALD + E +Q
Sbjct: 465 FIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQE 524
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER-NGVYASMWIQQN 1174
AL+R+ RT +++AHRLSTI +A+ + V+ G+I E G+HEELL + NG+Y + +Q+
Sbjct: 525 ALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 568 GKNTV-GERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G NTV GE+G+ LSGG+KQR+AIA +L+ P + D
Sbjct: 472 GFNTVVGEKGVLLSGGQKQRIAIA-RALLKNPKILLLD 508
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 143/240 (59%), Gaps = 32/240 (13%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKST++ LL R YD SG I +D +I+ ++ LR IG V Q+ +LF+ SI
Sbjct: 407 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIA 466
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y + S + + EE++ A A+
Sbjct: 467 ENIAYGADDPS-------------------------------SVTAEEIQRVAEVANAVA 495
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I +FP G++T VGE+G+ LSGG+KQR+AIAR LLK P+I+LLDEATSALD + E +Q
Sbjct: 496 FIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQE 555
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER-NGVYASMWIQQN 1174
AL+R+ RT +++AH LSTI +A+ + V+ G+I E G+HEELL + NG+Y + +Q+
Sbjct: 556 ALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 615
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 568 GKNTV-GERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G NTV GE+G+ LSGG+KQR+AIA +L+ P + D
Sbjct: 503 GFNTVVGEKGVLLSGGQKQRIAIA-RALLKNPKILLLD 539
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 140/236 (59%), Gaps = 35/236 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 37 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 96
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A S E+V AA A H+ I E++E
Sbjct: 97 DNISLANPGMSVEKVIYAAKLAGAHDFI------------------SELRE--------- 129
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
GY+T VGE+G LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I
Sbjct: 130 -------GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL-ERNGVYASMW 1170
++++C RT II+AHRLST+ +AD I+VM G+IVE+G+H+ELL E +Y+ ++
Sbjct: 183 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 238
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G NT VGE+G LSGG++QR+AIA +LV+ P + +D
Sbjct: 130 GYNTIVGEQGAGLSGGQRQRIAIA-RALVNNPKILIFD 166
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 140/236 (59%), Gaps = 35/236 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 35 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 94
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A S E+V AA A H+ I E++E
Sbjct: 95 DNISLANPGMSVEKVIYAAKLAGAHDFI------------------SELRE--------- 127
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
GY+T VGE+G LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I
Sbjct: 128 -------GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL-ERNGVYASMW 1170
++++C RT II+AHRLST+ +AD I+VM G+IVE+G+H+ELL E +Y+ ++
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G NT VGE+G LSGG++QR+AIA +LV+ P + +D
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIA-RALVNNPKILIFD 164
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 140/236 (59%), Gaps = 35/236 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 41 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 100
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A S E+V AA A H+ I E++E
Sbjct: 101 DNISLANPGMSVEKVIYAAKLAGAHDFI------------------SELRE--------- 133
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
GY+T VGE+G LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I
Sbjct: 134 -------GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL-ERNGVYASMW 1170
++++C RT II+AHRLST+ +AD I+VM G+IVE+G+H+ELL E +Y+ ++
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G NT VGE+G LSGG++QR+AIA +LV+ P + +D
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIA-RALVNNPKILIFD 170
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 140/236 (59%), Gaps = 35/236 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++G+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 37 VGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 96
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A S E+V AA A H+ I E++E
Sbjct: 97 DNISLANPGMSVEKVIYAAKLAGAHDFI------------------SELRE--------- 129
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
GY+T VGE+G LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I
Sbjct: 130 -------GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL-ERNGVYASMW 1170
++++C RT II+AHRLST+ +AD I+VM G+IVE+G+H+ELL E +Y+ ++
Sbjct: 183 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 238
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G NT VGE+G LSGG++QR+AIA +LV+ P + +D
Sbjct: 130 GYNTIVGEQGAGLSGGQRQRIAIA-RALVNNPKILIFD 166
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 140/236 (59%), Gaps = 35/236 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 41 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 100
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A S E+V AA A H+ I E++E
Sbjct: 101 DNISLANPGMSVEKVIYAAKLAGAHDFI------------------SELRE--------- 133
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
GY+T VGE+G LSGG++QR+AIAR L+ P+I++ D+ATSALD ++E I
Sbjct: 134 -------GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMR 186
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL-ERNGVYASMW 1170
++++C RT II+AHRLST+ +AD I+VM G+IVE+G+H+ELL E +Y+ ++
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G NT VGE+G LSGG++QR+AIA +LV+ P + +D
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIA-RALVNNPKILIFD 170
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 35/236 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 35 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 94
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A S E+V AA A H+ I E++E
Sbjct: 95 DNISLANPGMSVEKVIYAAKLAGAHDFI------------------SELRE--------- 127
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
GY+T VGE+G LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I
Sbjct: 128 -------GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL-ERNGVYASMW 1170
++++C RT II+A RLST+ +AD I+VM G+IVE+G+H+ELL E +Y+ ++
Sbjct: 181 NMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G NT VGE+G LSGG++QR+AIA +LV+ P + +D
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIA-RALVNNPKILIFD 164
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 35/236 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 41 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 100
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A S E+V AA A H+ I E++E
Sbjct: 101 DNISLANPGMSVEKVIYAAKLAGAHDFI------------------SELRE--------- 133
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
GY+T VGE+G LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I
Sbjct: 134 -------GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL-ERNGVYASMW 1170
++++C RT II+A RLST+ +AD I+VM G+IVE+G+H+ELL E +Y+ ++
Sbjct: 187 NMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G NT VGE+G LSGG++QR+AIA +LV+ P + +D
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIA-RALVNNPKILIFD 170
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 33/261 (12%)
Query: 915 DAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974
D+ LR I+ E+Q + G SG GKSTI LL RFY +G+I ID Q I +S
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 975 SLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQY 1034
+ R IG V QD+ + +I+ N+ Y G + Y
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTY----------------------------GLEGDY 104
Query: 1035 ARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQ 1094
++E++ + A + + PD +T+VGERG+K+SGG++QR+AIAR L+ P+
Sbjct: 105 -----TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159
Query: 1095 IVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 1154
I++LDEAT++LD+++E +Q AL+ + RTT+++AHRLSTI+ AD+I + G+I G
Sbjct: 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSG 219
Query: 1155 RHEELLERNGVYASMWIQQNT 1175
+H EL+ + +YA +Q T
Sbjct: 220 KHNELVATHPLYAKYVSEQLT 240
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 19/19 (100%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
VGERG+K+SGG++QR+AIA
Sbjct: 133 VGERGVKISGGQRQRLAIA 151
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 116/236 (49%), Gaps = 35/236 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +G+GKST+ LL Y G + +D + + L + V Q+ +LF S +
Sbjct: 51 VGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y + EE+ A + H+
Sbjct: 111 ENIAYGLTR---------------------------------TPTMEEITAVAMESGAHD 137
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I FP GYDT+VGE G +LSGG++Q VA+AR L++ P++++LD+ATSALD + +Q
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQR 197
Query: 1116 ALNRVC--ASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
L ASRT +++ H+LS A IL + G + E+G H +L+ER G Y SM
Sbjct: 198 LLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
VGE G +LSGG++Q VA+A +L+ KP + D
Sbjct: 150 VGETGNQLSGGQRQAVALA-RALIRKPRLLILD 181
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 35/236 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +G+GKST+ LL Y G + +D + + L + V Q+ +LF S +
Sbjct: 51 VGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y + EE+ A + H+
Sbjct: 111 ENIAYGLTR---------------------------------TPTMEEITAVAMESGAHD 137
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I FP GYDT+VGE G +LSGG++Q VA+AR L++ P++++LD ATSALD + +Q
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 1116 ALNRVC--ASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
L ASRT +++ +LS A IL + G + E+G H +L+ER G Y SM
Sbjct: 198 LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
VGE G +LSGG++Q VA+A +L+ KP + D
Sbjct: 150 VGETGNQLSGGQRQAVALA-RALIRKPRLLILD 181
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 125 bits (314), Expect = 1e-28, Method: Composition-based stats.
Identities = 74/236 (31%), Positives = 116/236 (49%), Gaps = 35/236 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +G+GKST+ LL Y G + +D + + L + + V Q+ +F S++
Sbjct: 49 VGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQ 108
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y TQ + EE+ AA + H
Sbjct: 109 ENIAYGL-----------------------------TQ----KPTMEEITAAAVKSGAHS 135
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I P GYDT+V E G +LSGG++Q VA+AR L++ P +++LD+ATSALD ++ ++
Sbjct: 136 FISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 1116 ALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
L SR+ +++ LS + AD IL + G I E G H++L+E+ G Y +M
Sbjct: 196 LLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAM 251
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 37/237 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +G+GKST+ LL Y G + +D + + L + V Q+ +LF S +
Sbjct: 51 VGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110
Query: 996 FNIQYARI-NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
NI Y + EE+ A + H+ I FP GY
Sbjct: 111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY------------------------ 146
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
DT+VGE G +L+ G++Q VA+AR L++ P++++LD ATSALD + +Q
Sbjct: 147 ----------DTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 1115 SALNRVC--ASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
L ASRT +++ +LS A IL + G + E+G H +L+ER G Y SM
Sbjct: 197 RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 41/231 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTVLFNNS 993
+G SG+GKST +R L D + G+I ID N+K + +R+ +G+V Q LF +
Sbjct: 35 IGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM 94
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
N I + +V+ ++ R A E + E +
Sbjct: 95 TVLN----NITLAPMKVR---------------------KWPREKA-EAKAMELLDKVGL 128
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
++ ++PD LSGG+ QRVAIAR L P+I+L DE TSALD + +
Sbjct: 129 KDKAHAYPD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV 177
Query: 1114 QSALNRVC-ASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
S + ++ T ++V H + D +L M G I+E G+ E+L +R
Sbjct: 178 LSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 41/231 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTVLFNNS 993
+G SG+GKST +R L D + G+I ID N+K + +R+ +G+V Q LF +
Sbjct: 56 IGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM 115
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
N I + +V+ ++ R A E + E +
Sbjct: 116 TVLN----NITLAPMKVR---------------------KWPREKA-EAKAMELLDKVGL 149
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
++ ++PD LSGG+ QRVAIAR L P+I+L DE TSALD + +
Sbjct: 150 KDKAHAYPD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV 198
Query: 1114 QSALNRVC-ASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
S + ++ T ++V H + D +L M G I+E G+ E+L +R
Sbjct: 199 LSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 51/235 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VGQ G GKS+++ L D K +++ ++ VPQ + N+S++
Sbjct: 37 VGQVGCGKSSLLSALLAEMD-------------KVEGHVAIKGSVAYVPQQAWIQNDSLR 83
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI + +++E + I L PD
Sbjct: 84 ENILFGC------QLEEPYYRSVIQACAL-LPD--------------------------- 109
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+ P G T++GE+G+ LSGG+KQRV++AR + I L D+ SA+D ++I
Sbjct: 110 -LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 1116 AL---NRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYA 1167
+ + ++T I+V H +S + D I+VM G+I E G ++ELL R+G +A
Sbjct: 169 NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFA 223
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 569 KNTVGERGLKLSGGEKQRVAIA 590
+ +GE+G+ LSGG+KQRV++A
Sbjct: 118 RTEIGEKGVNLSGGQKQRVSLA 139
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 58/231 (25%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQDTVLFNN 992
+G SGAGKST+IR + G + +D Q + T+S++ L R+ IG++ Q
Sbjct: 37 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ------- 89
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS-- 1050
FN+ +R ++ P D N ++EVK T
Sbjct: 90 --HFNLLSSRTVFGN----------------VALPLELD------NTPKDEVKRRVTELL 125
Query: 1051 -----ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
D H+ S+P LSGG+KQRVAIAR L P+++L DEATSAL
Sbjct: 126 SLVGLGDKHD---SYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSAL 171
Query: 1106 DTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIVER 1153
D T R+I L + T +++ H + + D + V+ GE++E+
Sbjct: 172 DPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 77.0 bits (188), Expect = 6e-14, Method: Composition-based stats.
Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 45/233 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G SG+GK+TI+RL+ GD++I + + + ++ +G+V Q+ LF + ++
Sbjct: 47 LGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTV 104
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
N+ + E+ V + A + E + ++ R+ +
Sbjct: 105 YDNVSFG---LREKRVPKDEMDARVRELL---------RFMRLESYANR----------- 141
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
FP +LSGG++QRVA+AR L PQ++L DE +A+DT+ R ++
Sbjct: 142 -----FPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 1115 SALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERNG 1164
+ + +V T++ V H + AD +LV+H G + + G EE+ E+ G
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 58/231 (25%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQDTVLFNN 992
+G SGAGKST+IR + G + +D Q + T+S++ L R+ IG++ Q
Sbjct: 60 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ------- 112
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS-- 1050
FN+ +R ++ P D N ++EVK T
Sbjct: 113 --HFNLLSSRTVFGN----------------VALPLELD------NTPKDEVKRRVTELL 148
Query: 1051 -----ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
D H+ S+P LSGG+KQRVAIAR L P+++L D+ATSAL
Sbjct: 149 SLVGLGDKHD---SYPS-----------NLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
Query: 1106 DTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIVER 1153
D T R+I L + T +++ H + + D + V+ GE++E+
Sbjct: 195 DPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 36/215 (16%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G++G+GKST++ R + E G+I ID + +++ R+A GV+PQ +F+ + +
Sbjct: 53 LGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFR 111
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ NA+ S++E+ + A +
Sbjct: 112 KNLDP---NAAH--------------------------------SDQEIWKVADEVGLRS 136
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I FP D + + G LS G KQ + +AR++L +I+LLDE ++ LD T + I+
Sbjct: 137 VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEI 1150
L + A T I+ R+ ++ D+ LV+ ++
Sbjct: 197 TLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 115/237 (48%), Gaps = 54/237 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ----NIKTVSQASLRQAIGVVPQDTVLFN 991
+G SGAGK+T +R++ +G+++ D++ N K + R+ IG+V Q L+
Sbjct: 37 LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK-IGMVFQTWALYP 95
Query: 992 NSIKF-NIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
N F NI + N S+EE+++ V+E A
Sbjct: 96 NLTAFENIAFPLTNMKMSKEEIRK------------------------------RVEEVA 125
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
DIH + FP +LSGG++QRVA+AR L+K P ++LLDE S LD +
Sbjct: 126 KILDIHHVLNHFP-----------RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
Query: 1109 TERNIQSALNRVCASR---TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
R+ AL + SR T ++V+H + I AD + V+ G++V+ G+ E+L +
Sbjct: 175 M-RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 47/229 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
VG SG GKST++R++ + SGD+FI + + A + +G+V Q L+ + S+
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE--RGVGMVFQSYALYPHLSV 92
Query: 995 KFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
N+ + ++ +++EV IN +V E A +
Sbjct: 93 AENMSFGLKLAGAKKEV--------------------------INQRVNQVAEVLQLAHL 126
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+R + LSGG++QRVAI RTL+ P + LLDE S LD +
Sbjct: 127 LDR--------------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
Query: 1114 QSALNRVCA--SRTTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEEL 1159
+ ++R+ RT I V H ++ + AD+I+V+ AG + + G+ EL
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 52/250 (20%)
Query: 919 CLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978
L ++L+ + Y + +G +GAGK+ + L+ F+ +SG I +D +++ +S +
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KH 72
Query: 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARI 1037
I V Q+ LF + ++K N+++ +++K+ +R+L
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFG---MRMKKIKDP-------KRVLD------------ 110
Query: 1038 NASEEEVKEAATSADIH-ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIV 1096
T+ D+ E +L L LSGGE+QRVA+AR L+ P+I+
Sbjct: 111 -----------TARDLKIEHLLD----------RNPLTLSGGEQQRVALARALVTNPKIL 149
Query: 1097 LLDEATSALDTKTERNIQSALNRVCASRTTIIVAH----RLSTIIHADEILVMHAGEIVE 1152
LLDE SALD +T+ N + L+ V + + V H + I AD I V+ G++++
Sbjct: 150 LLDEPLSALDPRTQENAREMLS-VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208
Query: 1153 RGRHEELLER 1162
G+ EE+ E+
Sbjct: 209 VGKPEEIFEK 218
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 47/229 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
VG SG GKST++R++ + SGD+FI + + A + +G+V Q L+ + S+
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE--RGVGMVFQSYALYPHLSV 92
Query: 995 KFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
N+ + ++ +++EV IN +V E A +
Sbjct: 93 AENMSFGLKLAGAKKEV--------------------------INQRVNQVAEVLQLAHL 126
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+R + LSGG++QRVAI RTL+ P + LLDE S LD +
Sbjct: 127 LDR--------------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
Query: 1114 QSALNRVCA--SRTTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEEL 1159
+ ++R+ RT I V H ++ + AD+I+V+ AG + + G+ EL
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 110/231 (47%), Gaps = 43/231 (18%)
Query: 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 991
++ +G SG+GKST++ + Y SG I+ D +++ + + +G+V Q+ L+
Sbjct: 31 FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVGLVFQNWALYP 88
Query: 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+ + + ++FP + + A +++V+E A
Sbjct: 89 HMTVY-------------------------KNIAFP--LELRKAPREEIDKKVREVAKML 121
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
I + + +P +LSGG++QRVAIAR L+K P+++LLDE S LD
Sbjct: 122 HIDKLLNRYP-----------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRL 170
Query: 1112 NIQSALNRVCASR--TTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEEL 1159
+++ L R+ TT+ V H + + AD I V+ GEI++ G +E+
Sbjct: 171 EVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 47/229 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
VG SG GKST++R++ + SGD+FI + + A + +G+V Q L+ + S+
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE--RGVGMVFQSYALYPHLSV 92
Query: 995 KFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
N+ + ++ +++EV IN +V E A +
Sbjct: 93 AENMSFGLKLAGAKKEV--------------------------INQRVNQVAEVLQLAHL 126
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+R + LSGG++QRVAI RTL+ P + LLD+ S LD +
Sbjct: 127 LDR--------------KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQM 172
Query: 1114 QSALNRVCA--SRTTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEEL 1159
+ ++R+ RT I V H ++ + AD+I+V+ AG + + G+ EL
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 58/231 (25%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQDTVLFNN 992
+G SGAGKST+IR + G + +D Q + T+S++ L R+ IG + Q
Sbjct: 60 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQ------- 112
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS-- 1050
FN+ +R ++ P D N ++EVK T
Sbjct: 113 --HFNLLSSRTVFGN----------------VALPLELD------NTPKDEVKRRVTELL 148
Query: 1051 -----ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
D H+ S+P LSGG+KQRVAIAR L P+++L D+ATSAL
Sbjct: 149 SLVGLGDKHD---SYPS-----------NLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
Query: 1106 DTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIVER 1153
D T R+I L + T +++ H + D + V+ GE++E+
Sbjct: 195 DPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 70/249 (28%), Positives = 108/249 (43%), Gaps = 50/249 (20%)
Query: 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 991
Y + +G +GAGKS + L+ + G++ ++ +I + R+ IG VPQD LF
Sbjct: 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFP 83
Query: 992 N-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
+ S+ NI Y N E + E+ L D + AR++
Sbjct: 84 HLSVYRNIAYGLRNVERVERDRRVRE--MAEK-LGIAHLLDRKPARLS------------ 128
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
GGE+QRVA+AR L+ P+++LLDE SA+D KT+
Sbjct: 129 --------------------------GGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162
Query: 1111 RNIQSALNRVCASRTTIIVAHRLSTIIH----ADEILVMHAGEIVERGRHEELLE-RNGV 1165
+ L R + + H +I ADE+ VM G IVE+G+ +EL +NG
Sbjct: 163 GVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
Query: 1166 YASMWIQQN 1174
A +N
Sbjct: 222 VAEFLSARN 230
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 54/237 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ----NIKTVSQASLRQAIGVVPQDTVLFN 991
+G SGAGK+T +R++ +G+++ D++ N K + R+ IG+V Q L+
Sbjct: 37 LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK-IGMVFQTWALYP 95
Query: 992 NSIKF-NIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
N F NI + N S+EE+++ V+E A
Sbjct: 96 NLTAFENIAFPLTNMKMSKEEIRK------------------------------RVEEVA 125
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
DIH + FP +LSG ++QRVA+AR L+K P ++LLDE S LD +
Sbjct: 126 KILDIHHVLNHFP-----------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
Query: 1109 TERNIQSALNRVCASR---TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
R+ AL + SR T ++V+H + I AD + V+ G++V+ G+ E+L +
Sbjct: 175 M-RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 93/230 (40%), Gaps = 55/230 (23%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIG-------VVPQ 985
G SG+GKST + ++ G+++IDN + L R IG ++P
Sbjct: 38 GPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97
Query: 986 DTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
T L N + +Y + EE K A
Sbjct: 98 LTALENVELPLIFKYRGAXSGEERRKRAL------------------------------- 126
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
E A++ ER + +LSGG++QRVAIAR L P I+L DE T AL
Sbjct: 127 ECLKXAELEERF----------ANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGAL 176
Query: 1106 DTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIHADEILVMHAGEIVER 1153
D+KT I L ++ +T ++V H ++ + I+ + GE VER
Sbjct: 177 DSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE-VER 225
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 41/229 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +GAGK+T +R++ SG + + +N+ +R+ I +P++ + N
Sbjct: 47 IGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQ- 104
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
I+Y R F G+ YA ++ EE+ E AT
Sbjct: 105 -GIEYLR-----------------------FVAGF---YASSSSEIEEMVERATEIA--- 134
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
G ++ +R S G +++ IAR L+ P++ +LDE TS LD R ++
Sbjct: 135 -------GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 187
Query: 1116 ALNRVCASRTTIIVA--HRLSTIIHADEILVMHAGEIVERGRHEELLER 1162
L + TI+V+ + L D I ++H G IVE G EEL ER
Sbjct: 188 ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 55/231 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIG-------VVP 984
+G SG+GKST++ ++ G+++IDN + L R IG ++P
Sbjct: 37 MGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP 96
Query: 985 QDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044
T L N + +Y + EE K A
Sbjct: 97 LLTALENVELPLIFKYRGAMSGEERRKRAL------------------------------ 126
Query: 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
E A++ ER + +LSGG++QRVAIAR L P I+L D+ T A
Sbjct: 127 -ECLKMAELEERF----------ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 1105 LDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIHADEILVMHAGEIVER 1153
LD+KT I L ++ +T ++V H ++ + I+ + GE VER
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE-VER 225
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 66.6 bits (161), Expect = 7e-11, Method: Composition-based stats.
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 42/235 (17%)
Query: 934 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV-----PQDTV 988
L +G +G+GKST+I ++ F + G ++ +N++I A L G+V PQ
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH-YGIVRTFQTPQP-- 93
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
L ++ N+ IN E + Y + EEE+ E A
Sbjct: 94 LKEMTVLENLLIGEINPGESPLNSLF-------------------YKKWIPKEEEMVEKA 134
Query: 1049 TSADIHERILSF---PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
+IL F YD + GE LSGG+ + V I R L+ P+++++DE + +
Sbjct: 135 F------KILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 1106 DTKTERNI-QSALNRVCASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEE 1158
+I L T +I+ HRL ++ + D + VM G+I+ GR EE
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ + E I F + + +GE G+ LSGG++ R+++AR + K + LLD LD T
Sbjct: 118 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 177
Query: 1110 ERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEEL 1159
E+ I +S + ++ A++T I+V ++ + AD+IL++H G G EL
Sbjct: 178 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 1037 INASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIV 1096
++ E K + + + I F + +T +GE G+ LSGG++ R+++AR + K +
Sbjct: 123 VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 182
Query: 1097 LLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
LLD LD TE + +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 183 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ + E I F + + +GE G+ LSGG++ R+++AR + K + LLD LD T
Sbjct: 106 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 1110 ERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEEL 1159
E+ I +S + ++ A++T I+V ++ + AD+IL++H G G EL
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 1037 INASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIV 1096
++ E K + + + I F + +T +GE G+ LSGG++ R+++AR + K +
Sbjct: 123 VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 182
Query: 1097 LLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
LLD LD TE + +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 183 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 1037 INASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIV 1096
++ E K + + + I F + +T +GE G+ LSGG++ R+++AR + K +
Sbjct: 123 VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 182
Query: 1097 LLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
LLD LD TE + +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 183 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 1037 INASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIV 1096
++ E K + + + I F + +T +GE G+ LSGG++ R+++AR + K +
Sbjct: 123 VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 182
Query: 1097 LLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
LLD LD TE + +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 183 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ + E I F + + +GE G+ LSGG++ R+++AR + K + LLD LD T
Sbjct: 105 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 164
Query: 1110 ERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
E+ I +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 165 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 204
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 1035 ARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQ 1094
A ++ E + + + E I F + + +GE G+ LSGG++ R+++AR + K
Sbjct: 121 AGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 180
Query: 1095 IVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
+ LLD LD TE+ I +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 181 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 235
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 1037 INASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIV 1096
++ E K + + + I F + +T +GE G+ LSGG++ R+++AR + K +
Sbjct: 122 VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 181
Query: 1097 LLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
LLD LD TE + +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 182 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 234
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ + E I F + + +GE G+ LSGG++ R+++AR + K + LLD LD T
Sbjct: 135 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
Query: 1110 ERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
E+ I +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 195 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ + E I F + + +GE G+ LSGG++ R+++AR + K + LLD LD T
Sbjct: 135 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
Query: 1110 ERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
E+ I +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 195 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 42/235 (17%)
Query: 934 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV-----PQDTV 988
L +G +G+GKST+I ++ F + G ++ +N++I A L G+V PQ
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH-YGIVRTFQTPQP-- 93
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
L ++ N+ IN E + Y + EEE+ E A
Sbjct: 94 LKEMTVLENLLIGEINPGESPLNSLF-------------------YKKWIPKEEEMVEKA 134
Query: 1049 TSADIHERILSF---PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
+IL F YD + GE LSGG+ + V I R L+ P+++++D+ + +
Sbjct: 135 F------KILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
Query: 1106 DTKTERNI-QSALNRVCASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEE 1158
+I L T +I+ HRL ++ + D + VM G+I+ GR EE
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 96/231 (41%), Gaps = 55/231 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIG-------VVP 984
+G SG+GKST++ ++ G+++IDN + L R IG ++P
Sbjct: 37 MGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP 96
Query: 985 QDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044
T L N + +Y + EE K A
Sbjct: 97 LLTALENVELPLIFKYRGAMSGEERRKRAL------------------------------ 126
Query: 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
E A++ ER F + Q LSGG++QRVAIAR L P I+L D+ T A
Sbjct: 127 -ECLKMAELEER---FANHKPNQ-------LSGGQQQRVAIARALANNPPIILADQPTWA 175
Query: 1105 LDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAGEIVER 1153
LD+KT I L ++ +T ++V H ++ + I+ + GE VER
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE-VER 225
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 62/235 (26%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 934 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV-----PQDTV 988
L +G +G+GKST+I ++ F + G ++ +N++I A L G+V PQ
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH-YGIVRTFQTPQP-- 93
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
L ++ N+ I E + Y + EEE+ E A
Sbjct: 94 LKEMTVLENLLIGEICPGESPLNSLF-------------------YKKWIPKEEEMVEKA 134
Query: 1049 TSADIHERILSF---PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
+IL F YD + GE LSGG+ + V I R L+ P+++++DE + +
Sbjct: 135 F------KILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 1106 DTKTERNI-QSALNRVCASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEE 1158
+I L T +I+ HRL ++ + D + VM G+I+ GR EE
Sbjct: 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 46/237 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIGVVPQD--TVLFN 991
+G +G GKST+ + SG I DN+ I + LR++IG+V QD LF+
Sbjct: 40 LGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99
Query: 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
S+ ++ + +N E +I +R+ D R E +K+ T
Sbjct: 100 ASVYQDVSFGAVNMKLPE-------DEIRKRV-------DNALKRTGI--EHLKDKPTHC 143
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
LS G+K+RVAIA L+ P++++LDE T+ LD
Sbjct: 144 -----------------------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180
Query: 1112 NIQSALNRVCASR--TTIIVAHRLSTI-IHADEILVMHAGEIVERGRHEELLERNGV 1165
I L + T II H + + ++ D + VM G ++ +G +E+ V
Sbjct: 181 EIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEV 237
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 112/249 (44%), Gaps = 37/249 (14%)
Query: 917 IGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL 976
+ +R ++LE + +++ +G SG GK+T +R++ + G I+I ++ + A
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV-----ADP 70
Query: 977 RQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYAR 1036
+ I V P+D + A + + +P + T Y
Sbjct: 71 EKGIFVPPKDRDI---------------------------AMVFQSYALYP--HMTVYDN 101
Query: 1037 INASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIV 1096
I + K D R ++ G + + +LSGG++QRVA+ R +++ PQ+
Sbjct: 102 IAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF 161
Query: 1097 LLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH-RLSTIIHADEILVMHAGEIVER 1153
L+DE S LD K +++ L ++ TTI V H ++ + D I VM+ G + +
Sbjct: 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221
Query: 1154 GRHEELLER 1162
G +E+ ++
Sbjct: 222 GSPDEVYDK 230
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 54/249 (21%)
Query: 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-----KTVSQASLRQAIGVVPQD 986
+L+ +G SG GK+T +R++ + G I+ ++++ K + + + Q+ V P
Sbjct: 40 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 99
Query: 987 TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
TV N + I+ FP + ++ V+
Sbjct: 100 TVYENIAFPLKIK-------------------------KFPK---------DEIDKRVRW 125
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
AA I E + +P +LSGG++QRVA+AR ++ P ++L+DE S LD
Sbjct: 126 AAELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
Query: 1107 TKTERNIQSALNRVCASR--TTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEEL-LER 1162
K +++ + ++ TTI V H ++ + D I VM+ G++++ G E+ L
Sbjct: 175 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 234
Query: 1163 NGVYASMWI 1171
N V+ + +I
Sbjct: 235 NSVFVATFI 243
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 54/249 (21%)
Query: 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-----KTVSQASLRQAIGVVPQD 986
+L+ +G SG GK+T +R++ + G I+ ++++ K + + + Q+ V P
Sbjct: 39 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 98
Query: 987 TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
TV N + I+ FP + ++ V+
Sbjct: 99 TVYENIAFPLKIK-------------------------KFPK---------DEIDKRVRW 124
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
AA I E + +P +LSGG++QRVA+AR ++ P ++L+DE S LD
Sbjct: 125 AAELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 1107 TKTERNIQSALNRVCASR--TTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEEL-LER 1162
K +++ + ++ TTI V H ++ + D I VM+ G++++ G E+ L
Sbjct: 174 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233
Query: 1163 NGVYASMWI 1171
N V+ + +I
Sbjct: 234 NSVFVATFI 242
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 1052 DIHERILSF--PDGYDTQV-GERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
D ER L + G D + G+ + LSGG++QRV+IAR L P ++L DE TSALD +
Sbjct: 128 DARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 1109 TERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ + ++ +T ++V H + H + ++ +H G+I E G E++
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVAHRL 1133
LSGGEK+RVAIA ++ P I++LDE LD + + ++ + + +T I+++H +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 1134 STII-HADEILVMHAGEIVERGRHEELLER 1162
T+I H D ++V+ G+ V G E LE+
Sbjct: 201 ETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVAHRL 1133
LSGGEK+RVAIA ++ P I++LDE LD + + ++ + + +T I+++H +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 1134 STII-HADEILVMHAGEIVERGRHEELLER 1162
T+I H D ++V+ G+ V G E LE+
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ + E I F + + +GE G+ LS G++ ++++AR + K + LLD LD T
Sbjct: 136 ACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLT 195
Query: 1110 ERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
E+ I +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 196 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 235
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ + E I F + + +GE G+ LS G++ ++++AR + K + LLD LD T
Sbjct: 135 ACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLT 194
Query: 1110 ERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148
E+ I +S + ++ A++T I+V ++ + AD+IL++H G
Sbjct: 195 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 112/247 (45%), Gaps = 53/247 (21%)
Query: 923 IALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGV 982
++ E + ++ +G SG GK+T + +L Y SG+I+ D+ + + + +G+
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGM 79
Query: 983 VPQDTVLFNN-----SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARI 1037
V Q+ L+ + +I F ++ RI+ E + +R++
Sbjct: 80 VFQNYALYPHMTVFENIAFPLRARRISKDE-----------VEKRVV------------- 115
Query: 1038 NASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVL 1097
+I ++L D + + +LSGG++QRVA+AR L+K P+++L
Sbjct: 116 --------------EIARKLL-----IDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL 156
Query: 1098 LDEATSALDTKTERNIQSALNRVCASR--TTIIVAH-RLSTIIHADEILVMHAGEIVERG 1154
DE S LD +++ + + T++ V H + + A I V + G++V+ G
Sbjct: 157 FDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYG 216
Query: 1155 RHEELLE 1161
+E+ +
Sbjct: 217 TPDEVYD 223
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 59/257 (22%)
Query: 917 IGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-------- 968
+ ++ ++LE + +L+ +G SG GK+T +R + + G I+I++ +
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVF 78
Query: 969 ---KTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILS 1025
K A + Q+ + P TV N I F ++ ++ E
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDN--IAFPLKLRKVPKQE------------------ 118
Query: 1026 FPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAI 1085
++ V+E A + E + P +LSGG++QRVA+
Sbjct: 119 --------------IDKRVREVAEXLGLTELLNRKPR-----------ELSGGQRQRVAL 153
Query: 1086 ARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH-RLSTIIHADEI 1142
R +++ P++ L DE S LD K ++ L ++ TTI V H ++ D I
Sbjct: 154 GRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRI 213
Query: 1143 LVMHAGEIVERGRHEEL 1159
V + GE+ + G +E+
Sbjct: 214 AVXNKGELQQVGTPDEV 230
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 56.6 bits (135), Expect = 9e-08, Method: Composition-based stats.
Identities = 63/249 (25%), Positives = 107/249 (42%), Gaps = 53/249 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSI 994
+G +GAGKST++RLL + G+ + QN+ + +L + V+ Q + L F S+
Sbjct: 43 IGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSV 102
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
IQ R + ++A ++V +
Sbjct: 103 SEVIQMGRAPYGGSQDRQAL---------------------------QQVMAQTDCLALA 135
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK------APQIVLLDEATSALDTK 1108
+R D +V LSGGE+QRV +AR L + P+ + LDE TSALD
Sbjct: 136 QR--------DYRV------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181
Query: 1109 TERNIQSALNRVCASRTTII--VAHRLS-TIIHADEILVMHAGEIVERGRHEELLERNGV 1165
+++ L ++ + V H L+ ++AD I+++ G++V G EE+L N
Sbjct: 182 HQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL--NAE 239
Query: 1166 YASMWIQQN 1174
+ W Q +
Sbjct: 240 TLTQWYQAD 248
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 45/233 (19%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTVLF 990
L +G SG GK+T++R L F +SG+I + + I K + + +G + Q+ VLF
Sbjct: 33 LFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92
Query: 991 NN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
+ ++ NI Y N +E +RI
Sbjct: 93 PHLTVYRNIAYGLGNGKGRTAQE-------RQRI-------------------------- 119
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
E +L G G +LSGG++QR A+AR L P+++LLDE SALD +
Sbjct: 120 -----EAMLEL-TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL 173
Query: 1110 ERNIQSALNRVCAS--RTTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEEL 1159
R I+ + + ++ + V+H R + +AD I VM G I++ EL
Sbjct: 174 RRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 51/232 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYD----VESGDIFIDNQNIKTVSQASLRQ----AIGVVPQDT 987
VG+S +GKSTII + + + SG + +++ T+ + LR+ I +VPQ
Sbjct: 40 VGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAA 99
Query: 988 VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASE--EEVK 1045
N I++ F D + R + SE E+
Sbjct: 100 QQSLNPTMKVIEH-------------------------FKDTVEAHGVRWSHSELIEKAS 134
Query: 1046 EAATSADIH-ERIL-SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103
E ++ E +L S+P L+LSGG KQRV IA LL P +++LDE TS
Sbjct: 135 EKLRMVRLNPEAVLNSYP-----------LQLSGGMKQRVLIALALLLDPVVLILDEPTS 183
Query: 1104 ALDTKTERN-IQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIVE 1152
ALD T+ + IQ + T+I V H ++ AD++ V++ G +VE
Sbjct: 184 ALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 39/235 (16%)
Query: 920 LRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979
L+ I+L + ++ +G SG+GKST++ +L G +F++ + + ++ L
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL--- 76
Query: 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINA 1039
++L N + F Q+ + + E ++ +L ++
Sbjct: 77 -------SLLRNRKLGFVFQFHYL------IPELTALENVIVPML-----------KMGK 112
Query: 1040 SEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLD 1099
++E KE E +LS G ++ + +LSGGE+QRVAIAR L P ++ D
Sbjct: 113 PKKEAKERG------EYLLS-ELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD 165
Query: 1100 EATSALDTKTERNIQSALNRVCASRTTII-VAH--RLSTIIHADEILVMHAGEIV 1151
E T LD+ + + ++ T+I+ V H L+ + H L M G++V
Sbjct: 166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTH--RTLEMKDGKVV 218
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 46/230 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++G+GK+T++++L +G+IF+D P D L ++
Sbjct: 43 VGKNGSGKTTLLKILAGLL-AAAGEIFLDGS-----------------PADPFL----LR 80
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ Y N S + + A + E + + + ++ SE + +
Sbjct: 81 KNVGYVFQNPSSQII-----GATVEEDV-----AFSLEIMGLDESE-----------MRK 119
Query: 1056 RILSFPD--GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
RI + G L LSGG+KQR+AIA L + + + LDE S LD ++R I
Sbjct: 120 RIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 1114 QSALNRV-CASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER 1162
L + + I+V H L + D IL + G I G EE +ER
Sbjct: 180 FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+ L D YD V + LSGGE QRVAIA TLL+ I LLDE ++ LD + +
Sbjct: 457 KPLGIIDLYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 512
Query: 1116 ALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
A+ + +T ++V H + I + + L++ GE GRH L G+ M
Sbjct: 513 AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP---GRHGRALPPMGMREGM 565
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132
+LSGGE QRVAIA LL+ DE +S LD + + + R+ + ++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 1133 LSTIIHADEILVMHAGE 1149
L+ + + +++ + GE
Sbjct: 288 LAVLDYLSDVIHVVYGE 304
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+ L D YD V + LSGGE QRVAIA TLL+ I LLDE ++ LD + +
Sbjct: 443 KPLGIIDLYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 498
Query: 1116 ALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
A+ + +T ++V H + I + + L++ GE GRH L G+ M
Sbjct: 499 AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP---GRHGRALPPMGMREGM 551
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132
+LSGGE QRVAIA LL+ DE +S LD + + + R+ + ++V H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 1133 LSTIIHADEILVMHAGE 1149
L+ + + +++ + GE
Sbjct: 274 LAVLDYLSDVIHVVYGE 290
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+ L D YD +V E LSGGE QRVAIA TLL+ I LLDE ++ LD + +
Sbjct: 387 KPLGIIDLYDREVNE----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 442
Query: 1116 ALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAGEIVERGR 1155
A+ + +T ++V H + I + + L + GE + GR
Sbjct: 443 AIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEGEPGKYGR 484
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133
LSGGE QRVAIA LL+ DE +S LD + N A+ R+ ++ ++V H L
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Query: 1134 STIIHADEILVMHAGE 1149
+ + + +I+ + GE
Sbjct: 219 AVLDYLSDIIHVVYGE 234
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 1065 DTQVGERGLKLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSAL 1117
D ++G +LSGGE QRV +A +L+ A Q++LLDE ++LD + + L
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKIL 176
Query: 1118 NRVCASRTTIIV-AHRLS-TIIHADEILVMHAGEIVERGRHEELL 1160
+ +C I+ +H L+ T+ HA ++ G+ + GR EE+L
Sbjct: 177 SALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 62/109 (56%), Gaps = 17/109 (15%)
Query: 1065 DTQVGERGLKLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSAL 1117
D ++G +LSGGE QRV +A +L+ A Q++LLD+ ++LD QSAL
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSAL 172
Query: 1118 NRVCASRTT-----IIVAHRLS-TIIHADEILVMHAGEIVERGRHEELL 1160
+++ ++ + ++ +H L+ T+ HA ++ G+++ GR EE+L
Sbjct: 173 DKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 17/109 (15%)
Query: 1065 DTQVGERGLKLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSAL 1117
D ++G +LSGGE QRV +A +L+ A Q++LLD+ +LD QSAL
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSAL 172
Query: 1118 NRVCASRTT-----IIVAHRLS-TIIHADEILVMHAGEIVERGRHEELL 1160
+++ ++ + ++ +H L+ T+ HA ++ G+++ GR EE+L
Sbjct: 173 DKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 17/109 (15%)
Query: 1065 DTQVGERGLKLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSAL 1117
D ++G +LSGGE QRV +A +L+ A Q++LLDE ++LD QSAL
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSAL 172
Query: 1118 NRVCASRTT-----IIVAHRLS-TIIHADEILVMHAGEIVERGRHEELL 1160
+++ ++ + + +H L+ T+ HA ++ G+ + GR EE+L
Sbjct: 173 DKILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 50/253 (19%)
Query: 936 VGQSGAGKSTIIRLLF--RFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQ-----DT 987
+G +GAGKST+ ++L Y VE G+I +D +NI +S R+ + + Q
Sbjct: 35 MGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG 94
Query: 988 VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
V N ++ +Q A++ E V E T +L + + Y ++Y
Sbjct: 95 VTIANFLRLALQ-AKL-GREVGVAEFWTKVKKALELLDWDESYLSRY------------- 139
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
+G+ SGGEK+R I + L+ P +LDE S LD
Sbjct: 140 ------------LNEGF-----------SGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176
Query: 1108 KTERNIQSALNRVCASR-TTIIVAH--RLSTIIHADEILVMHAGEIVERGRHEELLERNG 1164
+ + +N + +++ H R+ I D++ VM G +V G E LE
Sbjct: 177 DALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEA 236
Query: 1165 VYASMWIQQNTKQ 1177
W+++ K+
Sbjct: 237 -KGYEWLKEKVKE 248
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 43/234 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGVVPQDTVLFNN-S 993
+G +GAGK+T + + + G I + Q+I + R I +VP+ +F +
Sbjct: 38 IGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFPELT 97
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
+ N+ N ++E D+ FP +KE
Sbjct: 98 VYENLXXGAYNRKDKE----GIKRDLEWIFSLFP---------------RLKE------- 131
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
++ + G LSGGE+Q +AI R L P+++ DE + L +
Sbjct: 132 -------------RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEV 178
Query: 1114 QSALNRVCASRTTIIVAHR--LSTIIHADEILVMHAGEIVERGRHEELLERNGV 1165
+ ++ TTI++ + L + A V+ G+IV G+ ELL+ V
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEXV 232
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 1132
SGGEK+R I + + P++ +LDE+ S LD + + +N + R+ IIV H R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 206
Query: 1133 LSTIIHADEILVMHAGEIVERG 1154
+ I D + V++ G IV+ G
Sbjct: 207 ILDYIKPDYVHVLYQGRIVKSG 228
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 1132
SGGEK+R I + + P++ +LDE+ S LD + + +N + R+ IIV H R
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225
Query: 1133 LSTIIHADEILVMHAGEIVERG 1154
+ I D + V++ G IV+ G
Sbjct: 226 ILDYIKPDYVHVLYQGRIVKSG 247
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNR 1119
GY ++G+ LSGGE QR+ +A L K + +LDE T L + R + L+R
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 1120 -VCASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGRHEELLERNGVYASMWIQ 1172
V T I++ H L I +AD I+ + G IV G EE+ + Y +++
Sbjct: 854 LVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 1075 LSGGEKQRVAIARTLLKA--PQIVLLDEATSALDTK-TERNIQSALNRVCASRTTIIVAH 1131
LSGGE QR+ +A + I +LDE T L + TER I++ T I+V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 1132 RLSTIIHADEIL 1143
I +AD I+
Sbjct: 525 DEEVIRNADHII 536
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 51/205 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+GQ+G GKST++ LL + G I + Q+IG VPQ F++
Sbjct: 37 LGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSIGFVPQ---FFSSPFA 80
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+++ + H + P +D Q A +A ++
Sbjct: 81 YSV-----------LDIVLMGRSTHINTFAKPKSHDYQVAM---------QALDYLNL-- 118
Query: 1056 RILSFPDGYDTQVGERGL-KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
T + +R LSGG++Q + IAR + +++LLDE TSALD + +
Sbjct: 119 ----------THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVL 168
Query: 1115 SALNRVCASR--TTIIVAHRLSTII 1137
S L + S+ T + H+ + ++
Sbjct: 169 SLLIDLAQSQNMTVVFTTHQPNQVV 193
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 1132
LSGGE Q++ IA TL K + +LD+ +S LD + + A+ RV R T I+ H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 1133 LSTIIH---ADEILVMHA 1147
LS IH AD I+V
Sbjct: 446 LS--IHDYIADRIIVFKG 461
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134
LSGG QR+ +A +LL+ + + D+ +S LD + N+ A+ + ++ I+V H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198
Query: 1135 TIIHADEILVMHAGEIVERGR 1155
+ + +++ + GE GR
Sbjct: 199 VLDYLTDLIHIIYGESSVYGR 219
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT---IIVAH 1131
LS GEKQRV IAR L PQ+++LDE + LD ++ S L+ + S T I V H
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 1132 RLSTII-HADEILVMHAGEIVERGRHEELL 1160
+ I + +IL++ G+ +++G E++L
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH 1131
LSGGE QR+ +A + VL LDE + L + R + L R+ T I+V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1132 RLSTIIHADEILVM------HAGEIVERGRHEELL 1160
TI HAD I+ + H G IV G ++ELL
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 1051 ADIHERILSFPD---GYDTQVGERGLKLSGGEKQRVAIARTLLK---APQIVLLDEATSA 1104
A +H + + D GY ++G+ LSGGE QRV +A L K + +LDE T+
Sbjct: 838 AGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTG 896
Query: 1105 LDTKTERNIQSALNR-VCASRTTIIVAHRLSTIIHAD 1140
L R + + +N V T I++ H L I +D
Sbjct: 897 LHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSD 933
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 1067 QVGERGLKLSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNR-VCA 1122
++G+ +LSGGE QR+ +A L ++ + + +LDE T+ L +Q L + V A
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 1123 SRTTIIVAHRLSTIIHADEILVMHAGEIVERGR 1155
T I V H++ + +D +L + G + GR
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGR 815
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR 1132
KLSGGE QR AI + ++ + + DE +S LD K N + + A ++ I V H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 1133 LSTI 1136
LS +
Sbjct: 281 LSVL 284
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR---VCASRTTIIVAH 1131
LSGGE QRVAI L I L+DE ++ LD++ +R I S + R + +T IV H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE-QRIICSKVIRRFILHNKKTAFIVEH 526
Query: 1132 RLSTIIH-ADEILVMHA 1147
+ AD+++V
Sbjct: 527 DFIMATYLADKVIVFEG 543
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNR 1119
GY ++G+ LSGGE QRV +A L + + +LDE T+ L + L+R
Sbjct: 835 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 1120 -VCASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGRHEELLE 1161
V T +++ H L I AD I+ + G+IV G EE+ E
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH 1131
LSGGE QR+ +A + VL LDE + L + + + L + T I+V H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 1132 RLSTIIHADEIL------VMHAGEIVERGRHEELL 1160
T++ AD ++ +H GE+V G EE++
Sbjct: 565 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNR 1119
GY ++G+ LSGGE QRV +A L + + +LDE T+ L + L+R
Sbjct: 835 GY-XKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 1120 -VCASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGRHEELLE 1161
V T +++ H L I AD I+ + G+IV G EE+ E
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTK-TERNIQSALNRVCASRTTIIVAH 1131
LSGGE QR+ +A + VL LDE + L + +R I + + T I+V H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 1132 RLSTIIHADEIL------VMHAGEIVERGRHEEL 1159
T + AD ++ +H GE+V G EE+
Sbjct: 565 DEDTXLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 1067 QVGERGLKLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNR-VCA 1122
++G+ LSGGE QRV +A L + + +LDE T+ L + L+R V
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 1123 SRTTIIVAHRLSTIIHADEILVM------HAGEIVERGRHEELLE 1161
T +++ H L I AD I+ + G+IV G EE+ E
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH 1131
LSGGE QR+ +A + VL LDE + L + + + L + T I+V H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 1132 RLSTIIHADEIL------VMHAGEIVERGRHEELL 1160
T++ AD ++ +H GE+V G EE++
Sbjct: 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 1048 ATSADIHERILSFPDGY-DTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
T I ++++ F G+ D + LSGG K ++A+AR +L+ I+LLDE T+ LD
Sbjct: 523 GTKEAIKDKLIEF--GFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Query: 1107 T 1107
T
Sbjct: 581 T 581
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 1131
LSGG+K ++ +A + P +++LDE T+ LD + + AL II+ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITH 956
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 1048 ATSADIHERILSFPDGY-DTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
T I ++++ F G+ D + LSGG K ++A+AR +L+ I+LLDE T+ LD
Sbjct: 517 GTKEAIKDKLIEF--GFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Query: 1107 T 1107
T
Sbjct: 575 T 575
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 1131
LSGG+K ++ +A + P +++LDE T+ LD + + AL II+ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITH 950
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
LSGG K ++A+AR +L+ I+LLDE T+ LDT
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 1131
LSGG+K ++ +A + P +++LDE T+ LD + + AL II+ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITH 956
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132
+LS G +RV +A TLL +I +LD+ A+D ++ + ++ + + +I++ R
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 1075 LSGGEKQRVAIAR--TLLKAPQI--VLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130
LSGGE+ AIA ++LK + +LDE +ALD L + + I++
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 1131 HRLSTIIHAD 1140
HR T+ AD
Sbjct: 389 HRKGTMEEAD 398
>pdb|1S1I|W Chain W, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 112
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 478 GVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRV--MNRGTDSI 522
G++ TRE I L + LHG+S + R E+ + ++ GTD +
Sbjct: 2 GLKDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDV 48
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 636 GVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRV--MNRGTDSI 680
G++ TRE I L + LHG+S + R E+ + ++ GTD +
Sbjct: 2 GLKDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDV 48
>pdb|2WW9|M Chain M, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound
To The Yeast 80s Ribosome
pdb|2WWA|M Chain M, Cryo-Em Structure Of Idle Yeast Ssh1 Complex Bound To The
Yeast 80s Ribosome
pdb|2WWB|M Chain M, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
The Actively Translating Wheat Germ 80s Ribosome
pdb|3IZS|GG Chain g, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|AA Chain a, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|AA Chain a, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|DD Chain d, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|DD Chain d, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|DD Chain d, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 113
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 478 GVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRV--MNRGTDSI 522
G++ TRE I L + LHG+S + R E+ + ++ GTD +
Sbjct: 3 GLKDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDV 49
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 636 GVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRV--MNRGTDSI 680
G++ TRE I L + LHG+S + R E+ + ++ GTD +
Sbjct: 3 GLKDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDV 49
>pdb|4AL3|A Chain A, Peptide Deformylase (Co-Form) With Mercaptoethanol
Length = 186
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
+EE + AAT DIH+RI+ D + + R+ E+ E + I E LS P+
Sbjct: 40 AEEGIGLAATQVDIHQRIIVI-DVSENRDERLVLINPELLEKSGETGIEEGXLSIPE 95
>pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+ Containing Form,
Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+ Containing Form,
Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+ Containing Form,
Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+ Containing Form
pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+ Containing Form
pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+ Containing Form
pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+ Containing Form In Complex With
Tripeptide Met-Ala-Ser
pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+ Containing Form In Complex With
Tripeptide Met-Ala-Ser
pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+ Containing Form In Complex With
Tripeptide Met-Ala-Ser
pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+ Containing Form
pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+ Containing Form
pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+ Containing Form
pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+ Containing Form In Complex With
Tripeptide Met-Ala-Ser
pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+ Containing Form In Complex With
Tripeptide Met-Ala-Ser
pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+ Containing Form In Complex With
Tripeptide Met-Ala-Ser
pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex From E.Coli
pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex From E.Coli
pdb|1G27|A Chain A, Crystal Structure Of E.Coli Polypeptide Deformylase
Complexed With The Inhibitor Bb-3497
pdb|1G27|B Chain B, Crystal Structure Of E.Coli Polypeptide Deformylase
Complexed With The Inhibitor Bb-3497
pdb|1G27|C Chain C, Crystal Structure Of E.Coli Polypeptide Deformylase
Complexed With The Inhibitor Bb-3497
pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli Peptide Deformylase
Complexed With Actinonin
pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli Peptide Deformylase
Complexed With Actinonin
pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli Peptide Deformylase
Complexed With Actinonin
pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Deformylase Complexed
With Antibiotic Actinonin
pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide Deformylase Complexed
With Antibiotic Actinonin
pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide Deformylase Complexed
With Antibiotic Actinonin
pdb|1XEM|A Chain A, High Resolution Crystal Structure Of Escherichia Coli Zinc-
Peptide Deformylase Bound To Formate
pdb|1XEN|A Chain A, High Resolution Crystal Structure Of Escherichia Coli Iron-
Peptide Deformylase Bound To Formate
pdb|1XEO|A Chain A, High Resolution Crystals Structure Of Cobalt- Peptide
Deformylase Bound To Formate
pdb|2AI8|A Chain A, E.Coli Polypeptide Deformylase Complexed With Sb-485343
pdb|2AI8|B Chain B, E.Coli Polypeptide Deformylase Complexed With Sb-485343
pdb|2AI8|C Chain C, E.Coli Polypeptide Deformylase Complexed With Sb-485343
Length = 168
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
+EE + AAT DIH+RI+ D + + R+ E+ E + I E LS P+
Sbjct: 40 AEEGIGLAATQVDIHQRIIVI-DVSENRDERLVLINPELLEKSGETGIEEGCLSIPE 95
>pdb|1DFF|A Chain A, Peptide Deformylase
Length = 164
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
+EE + AAT DIH+RI+ D + + R+ E+ E + I E LS P+
Sbjct: 40 AEEGIGLAATQVDIHQRIIVI-DVSENRDERLVLINPELLEKSGETGIEEGCLSIPE 95
>pdb|1DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr, 9
Structures
pdb|2KMN|A Chain A, Solution Structure Of Peptide Deformylase Complexed With
Actinonin
Length = 147
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
+EE + AAT DIH+RI+ D + + R+ E+ E + I E LS P+
Sbjct: 40 AEEGIGLAATQVDIHQRIIVI-DVSENRDERLVLINPELLEKSGETGIEEGCLSIPE 95
>pdb|4AZ4|A Chain A, E.Coli Deformylase With Co(Ii) And Hydrosulfide
Length = 186
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
+EE + AAT DIH+RI+ D + + R+ E+ E + I E LS P+
Sbjct: 40 AEEGIGLAATQVDIHQRIIVI-DVSENRDERLVLINPELLEKSGETGIEEGCLSIPE 95
>pdb|4AL2|A Chain A, Peptide Deformylase (Ni-Form) With Hydrosulfide
pdb|4AL2|B Chain B, Peptide Deformylase (Ni-Form) With Hydrosulfide
pdb|4AL2|C Chain C, Peptide Deformylase (Ni-Form) With Hydrosulfide
Length = 186
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
+EE + AAT DIH+RI+ D + + R+ E+ E + I E LS P+
Sbjct: 40 AEEGIGLAATQVDIHQRIIVI-DVSENRDERLVLINPELLEKSGETGIEEGCLSIPE 95
>pdb|2W3T|A Chain A, Chloro Complex Of The Ni-Form Of E.Coli Deformylase
pdb|2W3U|A Chain A, Formate Complex Of The Ni-Form Of E.Coli Deformylase
Length = 188
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
+EE + AAT DIH+RI+ D + + R+ E+ E + I E LS P+
Sbjct: 40 AEEGIGLAATQVDIHQRIIVI-DVSENRDERLVLINPELLEKSGETGIEEGCLSIPE 95
>pdb|2DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr, 20
Structures
Length = 147
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
+EE + AAT DIH+RI+ D + + R+ E+ E + I E LS P+
Sbjct: 40 AEEGIGLAATQVDIHQRIIVI-DVSENRDERLVLINPELLEKSGETGIEEGCLSIPE 95
>pdb|3K6L|A Chain A, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex
With Peptidomimetic Ligand Bb2827
pdb|3K6L|B Chain B, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex
With Peptidomimetic Ligand Bb2827
pdb|3K6L|C Chain C, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex
With Peptidomimetic Ligand Bb2827
Length = 169
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062
+EE + AAT DIH+RI+ D + + R+ E+ E + I E LS P+
Sbjct: 41 AEEGIGLAATQVDIHQRIIVI-DVSENRDERLVLINPELLEKSGETGIEEGCLSIPE 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,894,795
Number of Sequences: 62578
Number of extensions: 1127691
Number of successful extensions: 3518
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3123
Number of HSP's gapped (non-prelim): 330
length of query: 1192
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1082
effective length of database: 8,089,757
effective search space: 8753117074
effective search space used: 8753117074
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)