Query psy13234
Match_columns 1192
No_of_seqs 444 out of 2807
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:33:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0056|consensus 100.0 1E-179 2E-184 1502.8 36.3 748 187-1177 1-778 (790)
2 KOG0057|consensus 100.0 4E-110 8E-115 961.4 43.3 577 370-1175 10-588 (591)
3 COG5265 ATM1 ABC-type transpor 100.0 2E-108 5E-113 921.9 31.4 495 471-1171 1-496 (497)
4 KOG0058|consensus 100.0 7E-102 1E-106 919.3 60.5 509 624-1182 202-713 (716)
5 COG2274 SunT ABC-type bacterio 100.0 1.3E-92 2.8E-97 866.4 64.8 529 584-1174 178-709 (709)
6 KOG0055|consensus 100.0 1.7E-92 3.8E-97 877.0 60.6 502 624-1174 721-1226(1228)
7 KOG0055|consensus 100.0 2.3E-91 5E-96 867.0 50.2 575 524-1178 12-593 (1228)
8 COG1132 MdlB ABC-type multidru 100.0 1.2E-88 2.6E-93 823.1 62.5 501 624-1175 66-566 (567)
9 PLN03130 ABC transporter C fam 100.0 1.8E-86 4E-91 876.0 77.5 499 628-1175 971-1476(1622)
10 PRK11174 cysteine/glutathione 100.0 6.2E-87 1.3E-91 811.0 62.7 501 623-1175 76-586 (588)
11 KOG0054|consensus 100.0 7.5E-88 1.6E-92 852.6 54.4 498 626-1173 874-1375(1381)
12 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2E-84 4.4E-89 802.4 67.5 495 622-1173 188-685 (686)
13 TIGR00958 3a01208 Conjugate Tr 100.0 1.2E-83 2.6E-88 798.3 74.4 493 626-1170 217-711 (711)
14 TIGR01193 bacteriocin_ABC ABC- 100.0 4E-84 8.6E-89 802.4 65.0 497 622-1171 208-707 (708)
15 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.8E-83 8.3E-88 793.7 65.3 500 622-1170 206-709 (710)
16 PRK11176 lipid transporter ATP 100.0 7.7E-83 1.7E-87 773.9 63.7 500 624-1174 79-580 (582)
17 PRK10790 putative multidrug tr 100.0 6.8E-82 1.5E-86 767.6 69.1 502 623-1178 78-580 (592)
18 TIGR03375 type_I_sec_LssB type 100.0 5.1E-82 1.1E-86 782.0 65.9 490 622-1162 199-689 (694)
19 COG4988 CydD ABC-type transpor 100.0 4.4E-82 9.6E-87 739.3 61.3 506 622-1175 52-557 (559)
20 PTZ00265 multidrug resistance 100.0 1.4E-82 3.1E-87 832.4 62.3 501 623-1173 879-1465(1466)
21 PRK11160 cysteine/glutathione 100.0 9.1E-82 2E-86 764.6 62.3 497 624-1172 74-573 (574)
22 TIGR01846 type_I_sec_HlyB type 100.0 4.8E-81 1E-85 773.4 67.1 499 623-1174 192-693 (694)
23 TIGR00957 MRP_assoc_pro multi 100.0 1.5E-81 3.3E-86 829.0 63.4 494 628-1172 1023-1519(1522)
24 TIGR02203 MsbA_lipidA lipid A 100.0 8.7E-80 1.9E-84 745.0 66.2 502 622-1174 66-569 (571)
25 COG4618 ArpD ABC-type protease 100.0 5.1E-82 1.1E-86 722.3 43.7 512 558-1162 37-561 (580)
26 PRK10789 putative multidrug tr 100.0 7.5E-80 1.6E-84 747.1 64.0 504 624-1177 50-554 (569)
27 PRK13657 cyclic beta-1,2-gluca 100.0 1.7E-79 3.7E-84 746.2 64.7 500 627-1175 73-572 (588)
28 PLN03232 ABC transporter C fam 100.0 9.7E-80 2.1E-84 810.9 61.6 500 627-1175 967-1473(1495)
29 PTZ00243 ABC transporter; Prov 100.0 2.1E-79 4.6E-84 807.8 63.2 498 633-1174 1021-1547(1560)
30 TIGR01192 chvA glucan exporter 100.0 7.4E-78 1.6E-82 731.9 64.6 502 626-1176 72-573 (585)
31 TIGR02868 CydC thiol reductant 100.0 1.7E-78 3.7E-83 728.5 57.5 463 623-1133 66-529 (529)
32 TIGR02204 MsbA_rel ABC transpo 100.0 2.6E-77 5.6E-82 724.5 65.6 502 624-1173 72-575 (576)
33 TIGR01271 CFTR_protein cystic 100.0 1.3E-76 2.8E-81 780.5 63.3 505 625-1178 940-1457(1490)
34 TIGR02857 CydD thiol reductant 100.0 5E-76 1.1E-80 707.1 59.4 472 623-1145 57-529 (529)
35 PTZ00265 multidrug resistance 100.0 2E-75 4.3E-80 765.2 67.0 600 523-1176 43-731 (1466)
36 COG4987 CydC ABC-type transpor 100.0 2E-75 4.3E-80 673.7 54.3 487 632-1171 80-571 (573)
37 TIGR01842 type_I_sec_PrtD type 100.0 5.6E-74 1.2E-78 692.2 64.5 482 623-1162 59-543 (544)
38 PLN03232 ABC transporter C fam 100.0 2.8E-73 6.1E-78 749.7 71.0 470 635-1174 366-841 (1495)
39 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.3E-68 2.9E-73 647.2 53.8 473 625-1153 68-551 (555)
40 PLN03130 ABC transporter C fam 100.0 1.5E-67 3.2E-72 696.7 62.6 472 635-1174 366-841 (1622)
41 TIGR00957 MRP_assoc_pro multi 100.0 3.3E-63 7.2E-68 655.2 74.9 476 634-1174 382-863 (1522)
42 PRK10522 multidrug transporter 100.0 3.7E-64 8E-69 607.4 54.8 472 626-1163 64-541 (547)
43 KOG0054|consensus 100.0 9.4E-62 2E-66 615.5 55.6 475 635-1174 267-744 (1381)
44 TIGR00954 3a01203 Peroxysomal 100.0 1.6E-60 3.5E-65 586.7 54.0 470 626-1146 155-652 (659)
45 TIGR01271 CFTR_protein cystic 100.0 9E-57 1.9E-61 592.7 61.4 470 630-1171 142-646 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 1E-54 2.3E-59 573.9 66.8 488 623-1172 298-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 5.1E-51 1.1E-55 454.4 26.4 236 895-1174 2-238 (275)
48 PRK14257 phosphate ABC transpo 100.0 9.2E-47 2E-51 430.0 25.2 226 894-1163 79-315 (329)
49 cd03252 ABCC_Hemolysin The ABC 100.0 5E-46 1.1E-50 403.5 26.6 232 900-1171 3-235 (237)
50 cd03253 ABCC_ATM1_transporter 100.0 4.3E-45 9.4E-50 395.6 26.6 233 900-1172 3-235 (236)
51 cd03288 ABCC_SUR2 The SUR doma 100.0 6.7E-45 1.5E-49 400.5 26.4 237 894-1173 18-256 (257)
52 COG1126 GlnQ ABC-type polar am 100.0 5.7E-45 1.2E-49 383.5 22.6 216 900-1163 5-227 (240)
53 cd03254 ABCC_Glucan_exporter_l 100.0 1.8E-44 3.8E-49 389.1 25.2 224 900-1163 5-228 (229)
54 cd03251 ABCC_MsbA MsbA is an e 100.0 2.3E-44 4.9E-49 389.5 26.1 230 900-1169 3-233 (234)
55 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.3E-43 2.8E-48 384.8 25.9 232 900-1171 3-236 (238)
56 cd03244 ABCC_MRP_domain2 Domai 100.0 1.3E-43 2.8E-48 380.4 24.4 215 900-1155 5-220 (221)
57 COG1117 PstB ABC-type phosphat 100.0 6E-44 1.3E-48 374.4 18.9 222 900-1163 10-239 (253)
58 COG1135 AbcC ABC-type metal io 100.0 1.5E-43 3.3E-48 388.7 20.4 217 900-1163 4-233 (339)
59 cd03245 ABCC_bacteriocin_expor 100.0 7.5E-43 1.6E-47 374.3 24.7 215 900-1154 5-220 (220)
60 cd03261 ABC_Org_Solvent_Resist 100.0 1.3E-42 2.8E-47 376.7 24.6 220 900-1167 3-232 (235)
61 TIGR02314 ABC_MetN D-methionin 100.0 1.5E-42 3.2E-47 397.2 25.6 226 900-1172 4-243 (343)
62 PRK13631 cbiO cobalt transport 100.0 1.1E-42 2.3E-47 395.3 23.6 219 896-1162 22-266 (320)
63 COG1125 OpuBA ABC-type proline 100.0 1.4E-42 2.9E-47 371.7 19.5 216 900-1163 4-227 (309)
64 cd03248 ABCC_TAP TAP, the Tran 100.0 3.4E-42 7.3E-47 371.0 22.4 215 894-1150 10-226 (226)
65 cd03260 ABC_PstB_phosphate_tra 100.0 3E-42 6.6E-47 371.6 21.2 215 900-1159 3-227 (227)
66 PRK14269 phosphate ABC transpo 100.0 9.3E-42 2E-46 372.9 23.0 223 900-1162 5-231 (246)
67 cd03219 ABC_Mj1267_LivG_branch 100.0 1.4E-41 3E-46 368.2 22.3 227 900-1162 3-233 (236)
68 PRK13650 cbiO cobalt transport 100.0 2.5E-41 5.5E-46 376.9 25.0 217 900-1163 7-231 (279)
69 cd03256 ABC_PhnC_transporter A 100.0 1.9E-41 4E-46 368.0 22.7 224 900-1160 3-233 (241)
70 PRK11650 ugpC glycerol-3-phosp 100.0 3.2E-41 7E-46 388.2 25.7 215 900-1163 6-226 (356)
71 PRK13647 cbiO cobalt transport 100.0 3.4E-41 7.4E-46 375.0 24.8 214 900-1160 7-226 (274)
72 TIGR02315 ABC_phnC phosphonate 100.0 2.6E-41 5.6E-46 367.6 22.6 224 900-1160 4-234 (243)
73 TIGR01186 proV glycine betaine 100.0 2.8E-41 6E-46 389.0 24.0 206 910-1162 5-220 (363)
74 COG1122 CbiO ABC-type cobalt t 100.0 1.9E-41 4E-46 369.1 21.2 217 900-1163 6-230 (235)
75 PRK14273 phosphate ABC transpo 100.0 4E-41 8.8E-46 369.3 23.6 222 895-1162 7-239 (254)
76 PRK14242 phosphate transporter 100.0 3.9E-41 8.3E-46 369.0 22.9 222 896-1162 7-238 (253)
77 cd03263 ABC_subfamily_A The AB 100.0 3.5E-41 7.7E-46 361.4 22.1 212 900-1159 3-219 (220)
78 COG3839 MalK ABC-type sugar tr 100.0 2.6E-41 5.7E-46 382.1 21.6 213 900-1162 6-224 (338)
79 PRK13637 cbiO cobalt transport 100.0 7E-41 1.5E-45 374.9 24.8 218 900-1162 5-235 (287)
80 PRK11153 metN DL-methionine tr 100.0 7.4E-41 1.6E-45 383.6 25.5 225 900-1171 4-242 (343)
81 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.1E-41 1.3E-45 357.0 23.1 201 895-1156 6-207 (207)
82 cd03258 ABC_MetN_methionine_tr 100.0 9.2E-41 2E-45 361.5 24.8 216 900-1162 4-231 (233)
83 PRK14250 phosphate ABC transpo 100.0 9.5E-41 2.1E-45 364.2 25.1 221 900-1170 6-231 (241)
84 TIGR00960 3a0501s02 Type II (G 100.0 2.1E-41 4.5E-46 362.5 19.4 204 900-1150 4-216 (216)
85 PRK13635 cbiO cobalt transport 100.0 8.7E-41 1.9E-45 372.7 24.8 218 900-1164 8-232 (279)
86 cd03224 ABC_TM1139_LivF_branch 100.0 4.9E-41 1.1E-45 360.4 21.8 215 900-1161 3-221 (222)
87 COG1120 FepC ABC-type cobalami 100.0 2.4E-41 5.3E-46 370.0 19.8 221 900-1162 5-229 (258)
88 TIGR00972 3a0107s01c2 phosphat 100.0 8.7E-41 1.9E-45 365.2 23.8 219 900-1162 4-233 (247)
89 PRK11432 fbpC ferric transport 100.0 8E-41 1.7E-45 384.2 24.7 214 900-1163 9-228 (351)
90 PRK10744 pstB phosphate transp 100.0 1.1E-40 2.4E-45 367.4 24.8 223 894-1162 12-245 (260)
91 PRK13642 cbiO cobalt transport 100.0 1.4E-40 3E-45 370.5 25.2 218 900-1164 7-232 (277)
92 cd03296 ABC_CysA_sulfate_impor 100.0 6.8E-41 1.5E-45 364.4 22.2 219 900-1162 5-227 (239)
93 PRK13636 cbiO cobalt transport 100.0 1.3E-40 2.9E-45 371.8 24.5 217 900-1163 8-233 (283)
94 PRK13643 cbiO cobalt transport 100.0 1.5E-40 3.2E-45 372.4 24.9 216 900-1162 4-234 (288)
95 PRK13632 cbiO cobalt transport 100.0 1.9E-40 4.1E-45 368.1 24.9 217 900-1163 10-233 (271)
96 cd03259 ABC_Carb_Solutes_like 100.0 7.3E-41 1.6E-45 357.6 20.7 205 900-1154 3-213 (213)
97 PRK13652 cbiO cobalt transport 100.0 2.2E-40 4.7E-45 368.9 25.3 217 900-1163 6-229 (277)
98 PRK14267 phosphate ABC transpo 100.0 1.4E-40 3E-45 364.5 23.3 220 900-1163 7-239 (253)
99 cd03250 ABCC_MRP_domain1 Domai 100.0 1.4E-40 3.1E-45 353.4 22.5 196 900-1149 3-204 (204)
100 cd03226 ABC_cobalt_CbiO_domain 100.0 8.8E-41 1.9E-45 355.2 20.8 200 900-1151 2-205 (205)
101 PRK13634 cbiO cobalt transport 100.0 2E-40 4.3E-45 371.7 24.8 217 900-1162 5-236 (290)
102 cd03264 ABC_drug_resistance_li 100.0 1.8E-40 4E-45 354.0 22.7 205 900-1154 3-211 (211)
103 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.3E-40 2.9E-45 362.7 22.0 218 900-1162 3-226 (242)
104 PRK13646 cbiO cobalt transport 100.0 2.2E-40 4.7E-45 370.6 24.2 217 900-1163 5-237 (286)
105 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.4E-40 5.2E-45 367.1 24.1 221 900-1168 27-258 (269)
106 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4E-40 8.7E-45 357.7 25.0 214 900-1162 4-222 (236)
107 COG1136 SalX ABC-type antimicr 100.0 2.6E-40 5.6E-45 355.8 23.1 206 900-1152 4-222 (226)
108 PRK14244 phosphate ABC transpo 100.0 1.1E-40 2.3E-45 365.3 20.6 223 900-1162 8-238 (251)
109 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.3E-40 2.7E-45 356.6 20.4 204 900-1150 3-218 (218)
110 PRK14247 phosphate ABC transpo 100.0 3.2E-40 6.9E-45 361.1 23.4 223 900-1162 6-235 (250)
111 cd03266 ABC_NatA_sodium_export 100.0 3.3E-40 7.2E-45 353.4 23.0 207 900-1154 4-218 (218)
112 PRK14235 phosphate transporter 100.0 2.6E-40 5.5E-45 366.3 22.7 223 894-1162 18-252 (267)
113 cd03291 ABCC_CFTR1 The CFTR su 100.0 8.1E-40 1.7E-44 365.8 26.9 218 894-1170 38-256 (282)
114 cd03218 ABC_YhbG The ABC trans 100.0 4.2E-40 9E-45 355.8 23.7 214 900-1161 3-222 (232)
115 PRK14239 phosphate transporter 100.0 3.2E-40 7E-45 361.2 22.9 220 900-1162 8-237 (252)
116 PRK14237 phosphate transporter 100.0 5E-40 1.1E-44 364.0 24.6 225 894-1163 19-253 (267)
117 TIGR03265 PhnT2 putative 2-ami 100.0 2.3E-40 4.9E-45 380.8 22.7 214 900-1163 7-226 (353)
118 PRK14251 phosphate ABC transpo 100.0 2.9E-40 6.2E-45 361.7 22.3 221 900-1163 7-237 (251)
119 PRK10851 sulfate/thiosulfate t 100.0 4.4E-40 9.6E-45 378.4 25.0 214 900-1163 5-228 (353)
120 cd03290 ABCC_SUR1_N The SUR do 100.0 4.2E-40 9.1E-45 353.2 23.2 209 900-1149 3-218 (218)
121 PRK13633 cobalt transporter AT 100.0 3.5E-40 7.5E-45 367.8 22.8 217 900-1163 7-235 (280)
122 PRK11629 lolD lipoprotein tran 100.0 5.1E-40 1.1E-44 356.2 23.5 209 900-1155 8-228 (233)
123 PRK10575 iron-hydroxamate tran 100.0 4.1E-40 8.8E-45 364.2 23.2 229 900-1171 14-246 (265)
124 cd03292 ABC_FtsE_transporter F 100.0 4.6E-40 9.9E-45 351.0 22.6 204 900-1150 3-214 (214)
125 PRK14245 phosphate ABC transpo 100.0 3E-40 6.4E-45 361.7 21.6 220 900-1162 6-235 (250)
126 PRK14274 phosphate ABC transpo 100.0 6.2E-40 1.3E-44 361.1 24.2 219 900-1162 15-244 (259)
127 TIGR02673 FtsE cell division A 100.0 2.7E-40 5.8E-45 353.2 20.4 203 900-1149 4-214 (214)
128 TIGR03005 ectoine_ehuA ectoine 100.0 4.5E-40 9.9E-45 360.6 22.7 215 900-1162 3-237 (252)
129 PRK14240 phosphate transporter 100.0 5E-40 1.1E-44 359.6 23.0 222 895-1162 3-235 (250)
130 PRK09493 glnQ glutamine ABC tr 100.0 8.6E-40 1.9E-44 355.7 24.6 215 900-1162 4-226 (240)
131 PRK13644 cbiO cobalt transport 100.0 7.5E-40 1.6E-44 364.2 24.7 216 900-1162 4-225 (274)
132 TIGR02211 LolD_lipo_ex lipopro 100.0 5.1E-40 1.1E-44 352.7 22.5 205 900-1151 4-220 (221)
133 cd03225 ABC_cobalt_CbiO_domain 100.0 4.8E-40 1E-44 350.5 22.1 203 900-1149 2-211 (211)
134 TIGR03410 urea_trans_UrtE urea 100.0 2.6E-40 5.6E-45 357.3 20.3 212 900-1159 3-219 (230)
135 PRK11264 putative amino-acid A 100.0 1.3E-39 2.9E-44 356.0 26.0 215 900-1162 6-234 (250)
136 PRK13649 cbiO cobalt transport 100.0 7.2E-40 1.6E-44 364.7 24.3 217 900-1162 5-235 (280)
137 PRK14236 phosphate transporter 100.0 5.2E-40 1.1E-44 364.8 22.8 223 895-1162 25-257 (272)
138 PRK14268 phosphate ABC transpo 100.0 7.6E-40 1.6E-44 360.5 23.9 221 896-1162 13-243 (258)
139 PRK13648 cbiO cobalt transport 100.0 8.5E-40 1.8E-44 362.4 24.4 217 900-1163 10-233 (269)
140 PRK15079 oligopeptide ABC tran 100.0 8.5E-40 1.8E-44 373.2 24.9 226 900-1171 11-263 (331)
141 cd03301 ABC_MalK_N The N-termi 100.0 4.7E-40 1E-44 351.0 21.3 205 900-1154 3-213 (213)
142 cd03268 ABC_BcrA_bacitracin_re 100.0 5.2E-40 1.1E-44 349.8 21.5 203 900-1154 3-208 (208)
143 PRK11000 maltose/maltodextrin 100.0 7.2E-40 1.6E-44 378.8 24.5 213 900-1162 6-224 (369)
144 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.1E-40 8.8E-45 353.8 20.5 205 900-1156 3-218 (220)
145 PRK13640 cbiO cobalt transport 100.0 1.1E-39 2.4E-44 364.2 24.8 216 900-1162 8-233 (282)
146 TIGR03258 PhnT 2-aminoethylpho 100.0 7E-40 1.5E-44 377.7 23.9 218 894-1163 4-230 (362)
147 PRK14262 phosphate ABC transpo 100.0 7.2E-40 1.6E-44 358.3 22.7 228 900-1170 6-244 (250)
148 PRK11124 artP arginine transpo 100.0 6.8E-40 1.5E-44 356.9 22.3 215 900-1162 5-231 (242)
149 PRK09452 potA putrescine/sperm 100.0 9.8E-40 2.1E-44 378.0 25.0 216 896-1163 15-236 (375)
150 TIGR03411 urea_trans_UrtD urea 100.0 7.1E-40 1.5E-44 356.5 22.3 224 900-1161 5-231 (242)
151 cd03265 ABC_DrrA DrrA is the A 100.0 8.2E-40 1.8E-44 351.4 22.4 211 900-1159 3-219 (220)
152 PRK14249 phosphate ABC transpo 100.0 1.4E-39 3E-44 356.6 24.7 219 900-1162 7-236 (251)
153 PRK14238 phosphate transporter 100.0 1.2E-39 2.5E-44 362.0 23.9 222 896-1162 25-256 (271)
154 PRK10908 cell division protein 100.0 1.4E-39 3.1E-44 350.0 23.9 206 900-1152 4-217 (222)
155 PRK14272 phosphate ABC transpo 100.0 1.3E-39 2.8E-44 356.4 23.9 219 900-1162 7-237 (252)
156 PRK13638 cbiO cobalt transport 100.0 1.8E-39 4E-44 360.0 25.3 216 900-1163 4-227 (271)
157 PRK10619 histidine/lysine/argi 100.0 9.7E-40 2.1E-44 359.2 22.8 220 894-1162 4-242 (257)
158 PRK13651 cobalt transporter AT 100.0 1.2E-39 2.7E-44 368.0 24.2 216 900-1162 5-255 (305)
159 COG3842 PotA ABC-type spermidi 100.0 3.4E-40 7.4E-45 374.8 19.7 214 900-1163 8-228 (352)
160 PRK13645 cbiO cobalt transport 100.0 1.5E-39 3.3E-44 364.0 24.5 221 894-1162 5-241 (289)
161 cd03235 ABC_Metallic_Cations A 100.0 6.2E-40 1.3E-44 350.4 20.4 207 900-1154 2-213 (213)
162 PRK11231 fecE iron-dicitrate t 100.0 8.2E-40 1.8E-44 359.4 21.9 229 900-1171 5-236 (255)
163 PRK14248 phosphate ABC transpo 100.0 9.5E-40 2E-44 361.6 22.5 224 896-1162 22-253 (268)
164 PRK14253 phosphate ABC transpo 100.0 1.2E-39 2.5E-44 356.5 22.9 220 900-1162 6-234 (249)
165 PRK14256 phosphate ABC transpo 100.0 1.3E-39 2.8E-44 357.0 23.2 223 894-1162 3-237 (252)
166 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-39 2.5E-44 347.9 22.3 204 900-1154 3-211 (211)
167 PRK13639 cbiO cobalt transport 100.0 1.6E-39 3.6E-44 361.5 24.4 216 900-1162 4-227 (275)
168 PRK11831 putative ABC transpor 100.0 2.5E-39 5.5E-44 358.8 25.5 224 900-1171 10-244 (269)
169 PRK14261 phosphate ABC transpo 100.0 1.6E-39 3.6E-44 356.4 23.5 230 900-1170 9-247 (253)
170 TIGR02769 nickel_nikE nickel i 100.0 1.5E-39 3.3E-44 359.6 23.5 226 900-1168 5-247 (265)
171 cd03257 ABC_NikE_OppD_transpor 100.0 2.4E-39 5.2E-44 348.4 24.1 209 900-1154 4-228 (228)
172 PRK10771 thiQ thiamine transpo 100.0 2.4E-39 5.2E-44 350.7 24.3 213 900-1163 4-221 (232)
173 PRK11614 livF leucine/isoleuci 100.0 1E-39 2.2E-44 354.5 21.4 215 900-1162 8-227 (237)
174 PRK09536 btuD corrinoid ABC tr 100.0 1.2E-39 2.5E-44 379.9 23.2 229 900-1171 6-237 (402)
175 PRK14271 phosphate ABC transpo 100.0 2.3E-39 5E-44 360.8 24.6 220 900-1163 24-253 (276)
176 cd03300 ABC_PotA_N PotA is an 100.0 1.3E-39 2.8E-44 353.1 21.9 213 900-1162 3-221 (232)
177 PRK14270 phosphate ABC transpo 100.0 2.7E-39 5.9E-44 354.2 24.4 219 900-1162 7-236 (251)
178 COG1124 DppF ABC-type dipeptid 100.0 1.5E-39 3.3E-44 348.4 21.7 227 900-1170 6-241 (252)
179 TIGR00968 3a0106s01 sulfate AB 100.0 2.5E-39 5.3E-44 352.2 23.5 215 900-1162 3-221 (237)
180 COG1127 Ttg2A ABC-type transpo 100.0 1.8E-39 4E-44 346.5 21.8 222 895-1166 8-240 (263)
181 PRK10895 lipopolysaccharide AB 100.0 2.7E-39 5.9E-44 352.0 23.6 215 900-1162 6-227 (241)
182 PRK11607 potG putrescine trans 100.0 2.7E-39 5.9E-44 374.7 24.8 217 895-1163 19-241 (377)
183 PRK14266 phosphate ABC transpo 100.0 3.2E-39 6.9E-44 353.3 24.0 220 900-1162 6-235 (250)
184 PRK14259 phosphate ABC transpo 100.0 2.8E-39 6E-44 358.6 23.7 222 896-1162 14-254 (269)
185 cd03262 ABC_HisP_GlnQ_permease 100.0 2.5E-39 5.5E-44 345.1 22.5 203 900-1150 3-213 (213)
186 PRK14260 phosphate ABC transpo 100.0 2.2E-39 4.7E-44 357.1 22.5 222 895-1162 7-244 (259)
187 COG2884 FtsE Predicted ATPase 100.0 1.8E-39 3.8E-44 335.6 19.8 210 900-1156 4-221 (223)
188 PRK13641 cbiO cobalt transport 100.0 4E-39 8.7E-44 360.6 24.3 216 900-1162 5-235 (287)
189 PRK11300 livG leucine/isoleuci 100.0 2.5E-39 5.4E-44 354.8 22.2 232 900-1162 8-244 (255)
190 PRK10584 putative ABC transpor 100.0 2.6E-39 5.5E-44 349.1 21.9 207 900-1153 9-227 (228)
191 PRK11247 ssuB aliphatic sulfon 100.0 2.3E-39 5E-44 357.6 22.0 204 895-1157 12-219 (257)
192 COG3840 ThiQ ABC-type thiamine 100.0 1.5E-39 3.3E-44 333.7 18.9 214 900-1164 4-222 (231)
193 PRK15112 antimicrobial peptide 100.0 8.1E-39 1.8E-43 354.4 26.3 228 900-1174 7-254 (267)
194 PRK14241 phosphate transporter 100.0 2.8E-39 6.2E-44 355.7 22.4 219 900-1162 7-243 (258)
195 PRK14243 phosphate transporter 100.0 4E-39 8.7E-44 356.3 23.5 220 900-1162 13-249 (264)
196 PRK10070 glycine betaine trans 100.0 3.4E-39 7.3E-44 375.8 23.6 225 900-1172 31-267 (400)
197 PRK14252 phosphate ABC transpo 100.0 4E-39 8.6E-44 356.1 22.9 224 894-1162 15-250 (265)
198 TIGR03873 F420-0_ABC_ATP propo 100.0 3.9E-39 8.5E-44 354.2 22.6 228 900-1170 4-234 (256)
199 TIGR01277 thiQ thiamine ABC tr 100.0 4.8E-39 1E-43 344.1 22.6 205 900-1155 3-212 (213)
200 PRK10253 iron-enterobactin tra 100.0 4.2E-39 9.1E-44 356.1 22.9 231 895-1170 7-241 (265)
201 COG1116 TauB ABC-type nitrate/ 100.0 2.1E-39 4.6E-44 349.7 19.9 198 900-1150 6-211 (248)
202 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.6E-39 7.8E-44 351.5 21.9 224 900-1170 7-235 (254)
203 COG4178 ABC-type uncharacteriz 100.0 1.7E-36 3.8E-41 361.2 46.6 360 730-1146 225-587 (604)
204 PRK10247 putative ABC transpor 100.0 2.5E-39 5.3E-44 349.6 20.2 211 900-1157 10-223 (225)
205 TIGR01288 nodI ATP-binding ABC 100.0 6E-39 1.3E-43 361.8 24.2 214 900-1162 7-225 (303)
206 PRK09984 phosphonate/organopho 100.0 7.5E-39 1.6E-43 353.1 24.3 238 900-1177 7-256 (262)
207 PRK14263 phosphate ABC transpo 100.0 6.2E-39 1.3E-43 354.5 23.5 220 900-1162 11-246 (261)
208 PRK13537 nodulation ABC transp 100.0 6.4E-39 1.4E-43 362.3 24.0 214 900-1162 10-228 (306)
209 PRK11308 dppF dipeptide transp 100.0 6.3E-39 1.4E-43 365.5 24.1 226 900-1171 8-256 (327)
210 PRK13548 hmuV hemin importer A 100.0 8.2E-39 1.8E-43 352.7 24.2 215 900-1162 5-231 (258)
211 TIGR01978 sufC FeS assembly AT 100.0 6.5E-39 1.4E-43 348.5 22.8 223 900-1160 3-233 (243)
212 PRK14246 phosphate ABC transpo 100.0 9E-39 2E-43 352.5 24.1 227 900-1170 13-251 (257)
213 PRK14255 phosphate ABC transpo 100.0 5.6E-39 1.2E-43 351.7 22.3 220 900-1162 8-237 (252)
214 PRK14254 phosphate ABC transpo 100.0 7.1E-39 1.5E-43 358.5 23.5 222 896-1162 40-270 (285)
215 PRK09473 oppD oligopeptide tra 100.0 8.1E-39 1.7E-43 365.0 24.2 228 900-1171 15-263 (330)
216 cd03269 ABC_putative_ATPase Th 100.0 4.2E-39 9.1E-44 343.3 20.4 203 900-1154 3-210 (210)
217 PRK11144 modC molybdate transp 100.0 6.2E-39 1.4E-43 368.9 23.0 208 902-1163 5-220 (352)
218 cd03299 ABC_ModC_like Archeal 100.0 1E-38 2.2E-43 347.0 23.2 212 900-1162 3-220 (235)
219 PRK14275 phosphate ABC transpo 100.0 8.8E-39 1.9E-43 357.8 23.1 220 900-1162 42-271 (286)
220 TIGR01188 drrA daunorubicin re 100.0 1.1E-38 2.5E-43 359.3 24.1 204 911-1162 6-214 (302)
221 COG3638 ABC-type phosphate/pho 100.0 4.1E-39 9E-44 343.0 19.2 233 900-1171 6-245 (258)
222 cd03247 ABCC_cytochrome_bd The 100.0 6.5E-39 1.4E-43 334.3 19.6 175 900-1154 3-178 (178)
223 PRK11701 phnK phosphonate C-P 100.0 2.2E-38 4.8E-43 348.7 24.8 224 900-1170 9-251 (258)
224 PRK14258 phosphate ABC transpo 100.0 1.2E-38 2.6E-43 351.7 22.8 222 895-1162 7-246 (261)
225 TIGR03522 GldA_ABC_ATP gliding 100.0 1.4E-38 3.1E-43 358.5 23.6 214 900-1162 5-222 (301)
226 PRK11022 dppD dipeptide transp 100.0 7.9E-39 1.7E-43 364.6 21.6 226 900-1169 6-252 (326)
227 PRK14264 phosphate ABC transpo 100.0 1.2E-38 2.5E-43 360.0 22.5 237 895-1162 45-290 (305)
228 TIGR03415 ABC_choXWV_ATP choli 100.0 1.7E-38 3.7E-43 367.8 24.3 219 903-1169 30-263 (382)
229 PRK10419 nikE nickel transport 100.0 1.8E-38 4E-43 351.9 23.3 225 900-1171 6-251 (268)
230 TIGR02982 heterocyst_DevA ABC 100.0 1.5E-38 3.3E-43 341.9 22.0 204 900-1150 4-219 (220)
231 PRK10418 nikD nickel transport 100.0 2.6E-38 5.7E-43 347.5 23.9 227 900-1174 7-245 (254)
232 PRK14265 phosphate ABC transpo 100.0 3.2E-38 7E-43 351.1 24.5 223 895-1162 20-259 (274)
233 TIGR02142 modC_ABC molybdenum 100.0 2.2E-38 4.8E-43 364.6 23.7 212 902-1163 4-223 (354)
234 cd03234 ABCG_White The White s 100.0 1.4E-38 3.1E-43 343.4 20.6 210 900-1154 6-226 (226)
235 PRK15093 antimicrobial peptide 100.0 4.9E-38 1.1E-42 358.6 23.8 235 900-1170 6-258 (330)
236 PRK13547 hmuV hemin importer A 100.0 4.8E-38 1.1E-42 349.8 22.7 221 900-1162 4-245 (272)
237 cd03297 ABC_ModC_molybdenum_tr 100.0 5.9E-38 1.3E-42 335.7 22.1 202 902-1154 5-214 (214)
238 cd03246 ABCC_Protease_Secretio 100.0 3.8E-38 8.3E-43 327.3 19.4 169 900-1150 3-173 (173)
239 PRK13536 nodulation factor exp 100.0 9.7E-38 2.1E-42 357.4 23.7 216 896-1162 42-262 (340)
240 TIGR03740 galliderm_ABC gallid 100.0 1.1E-37 2.4E-42 335.6 21.8 205 900-1158 3-210 (223)
241 PRK11248 tauB taurine transpor 100.0 9.4E-38 2E-42 344.0 21.2 204 900-1156 4-215 (255)
242 TIGR01184 ntrCD nitrate transp 100.0 2.7E-37 5.9E-42 335.0 23.5 194 915-1160 2-203 (230)
243 PRK15056 manganese/iron transp 100.0 1.9E-37 4.1E-42 344.3 22.0 225 900-1170 9-238 (272)
244 TIGR03608 L_ocin_972_ABC putat 100.0 1.7E-37 3.7E-42 329.4 20.2 198 900-1145 1-206 (206)
245 PRK09580 sufC cysteine desulfu 100.0 2.3E-37 5E-42 337.7 21.5 223 900-1159 4-233 (248)
246 CHL00131 ycf16 sulfate ABC tra 100.0 5.3E-37 1.1E-41 335.9 23.9 223 900-1159 10-239 (252)
247 cd03233 ABC_PDR_domain1 The pl 100.0 2.4E-37 5.1E-42 329.4 20.6 186 900-1154 6-202 (202)
248 TIGR02323 CP_lyasePhnK phospho 100.0 4E-37 8.7E-42 337.3 22.4 226 900-1169 6-247 (253)
249 TIGR02770 nickel_nikD nickel i 100.0 4.3E-37 9.3E-42 333.0 22.4 210 914-1167 2-222 (230)
250 cd03232 ABC_PDR_domain2 The pl 100.0 2.2E-37 4.7E-42 327.1 19.5 177 900-1154 6-192 (192)
251 cd03213 ABCG_EPDR ABCG transpo 100.0 3.2E-37 6.9E-42 326.5 20.7 178 900-1154 6-194 (194)
252 COG1118 CysA ABC-type sulfate/ 100.0 2.3E-37 5E-42 339.3 20.0 218 900-1163 5-229 (345)
253 COG1131 CcmA ABC-type multidru 100.0 5.7E-37 1.2E-41 344.6 22.9 217 900-1162 7-227 (293)
254 cd03230 ABC_DR_subfamily_A Thi 100.0 3.2E-37 7E-42 320.4 19.1 168 900-1150 3-173 (173)
255 cd03215 ABC_Carb_Monos_II This 100.0 3.4E-37 7.3E-42 322.8 19.3 169 900-1150 7-182 (182)
256 COG4615 PvdE ABC-type sideroph 100.0 3.1E-35 6.8E-40 328.7 35.2 457 630-1153 68-529 (546)
257 PRK03695 vitamin B12-transport 100.0 1.3E-36 2.7E-41 333.5 23.6 218 900-1171 3-231 (248)
258 cd03229 ABC_Class3 This class 100.0 4.8E-37 1E-41 320.5 18.7 170 900-1149 3-178 (178)
259 PRK09544 znuC high-affinity zi 100.0 1.6E-36 3.5E-41 333.7 23.4 205 900-1170 7-217 (251)
260 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.7E-36 3.6E-41 322.2 21.6 184 900-1160 3-192 (200)
261 PLN03211 ABC transporter G-25; 100.0 1.4E-36 3E-41 374.0 23.7 214 900-1161 71-296 (659)
262 cd03228 ABCC_MRP_Like The MRP 100.0 1.4E-36 3E-41 315.1 19.7 168 900-1149 3-171 (171)
263 cd03223 ABCD_peroxisomal_ALDP 100.0 1.4E-36 3E-41 314.3 19.5 162 900-1149 3-164 (166)
264 TIGR03771 anch_rpt_ABC anchore 100.0 1.4E-36 3.1E-41 327.9 20.1 202 924-1170 3-209 (223)
265 PRK10261 glutathione transport 100.0 3.2E-36 6.9E-41 369.7 24.6 225 900-1171 316-565 (623)
266 cd03214 ABC_Iron-Siderophores_ 100.0 1.3E-36 2.9E-41 317.7 17.9 176 900-1154 2-180 (180)
267 PRK13549 xylose transporter AT 100.0 3.9E-36 8.4E-41 360.7 23.3 214 900-1161 8-232 (506)
268 PRK15439 autoinducer 2 ABC tra 100.0 4.2E-36 9.2E-41 360.8 23.2 214 896-1161 12-229 (510)
269 TIGR01187 potA spermidine/putr 100.0 4E-36 8.6E-41 342.3 21.6 185 935-1162 1-191 (325)
270 cd03267 ABC_NatA_like Similar 100.0 6.4E-36 1.4E-40 325.5 22.3 196 911-1154 34-236 (236)
271 PRK10982 galactose/methyl gala 100.0 3.3E-36 7.2E-41 359.9 22.0 213 900-1160 1-222 (491)
272 TIGR00955 3a01204 The Eye Pigm 100.0 1.6E-36 3.5E-41 371.9 19.6 211 910-1161 37-256 (617)
273 PRK09700 D-allose transporter 100.0 2.3E-36 4.9E-41 362.9 20.4 223 900-1161 8-234 (510)
274 TIGR01166 cbiO cobalt transpor 100.0 6E-36 1.3E-40 314.6 19.5 180 909-1135 3-189 (190)
275 cd03231 ABC_CcmA_heme_exporter 100.0 9.6E-36 2.1E-40 316.5 21.2 193 900-1145 3-198 (201)
276 PRK13538 cytochrome c biogenes 100.0 8.3E-36 1.8E-40 317.4 20.2 196 900-1145 4-202 (204)
277 PRK15134 microcin C ABC transp 100.0 8E-36 1.7E-40 359.7 22.6 217 896-1162 276-516 (529)
278 PRK10762 D-ribose transporter 100.0 1.3E-35 2.9E-40 355.7 23.3 220 900-1161 7-230 (501)
279 PRK13540 cytochrome c biogenes 100.0 9.1E-36 2E-40 316.2 18.8 193 900-1144 4-198 (200)
280 PRK11288 araG L-arabinose tran 100.0 8.8E-36 1.9E-40 357.2 20.9 209 900-1156 7-224 (501)
281 PRK10261 glutathione transport 100.0 2E-35 4.3E-40 362.7 23.7 221 896-1162 13-259 (623)
282 PRK15134 microcin C ABC transp 100.0 2.7E-35 5.9E-40 355.1 24.1 219 900-1162 8-247 (529)
283 PRK10938 putative molybdenum t 100.0 2E-35 4.3E-40 353.0 21.7 209 900-1162 6-225 (490)
284 PRK10535 macrolide transporter 100.0 4.7E-35 1E-39 360.8 24.8 214 900-1160 7-231 (648)
285 TIGR01189 ccmA heme ABC export 100.0 2.1E-35 4.6E-40 312.7 18.6 193 900-1144 3-197 (198)
286 TIGR02633 xylG D-xylose ABC tr 100.0 3.7E-35 8E-40 351.5 22.7 219 900-1160 4-229 (500)
287 COG4175 ProV ABC-type proline/ 100.0 2.6E-35 5.6E-40 323.4 19.0 202 914-1162 44-255 (386)
288 COG1123 ATPase components of v 100.0 5.7E-35 1.2E-39 344.6 23.2 230 900-1172 283-531 (539)
289 TIGR02324 CP_lyasePhnL phospho 100.0 5.5E-35 1.2E-39 314.6 21.0 200 900-1145 4-222 (224)
290 TIGR03269 met_CoM_red_A2 methy 100.0 3.1E-35 6.7E-40 353.9 21.2 220 900-1161 282-517 (520)
291 PRK13539 cytochrome c biogenes 100.0 4.5E-35 9.8E-40 312.7 19.8 194 900-1147 5-200 (207)
292 COG4619 ABC-type uncharacteriz 100.0 1.1E-35 2.3E-40 301.9 14.0 198 909-1152 14-214 (223)
293 TIGR03269 met_CoM_red_A2 methy 100.0 5.7E-35 1.2E-39 351.6 22.8 215 900-1162 3-259 (520)
294 PRK13546 teichoic acids export 100.0 1.1E-34 2.4E-39 321.6 22.8 208 905-1172 31-243 (264)
295 cd03216 ABC_Carb_Monos_I This 100.0 7.8E-35 1.7E-39 300.4 19.6 157 900-1152 3-162 (163)
296 COG4555 NatA ABC-type Na+ tran 100.0 5.4E-35 1.2E-39 304.6 17.5 216 900-1163 4-224 (245)
297 PRK13543 cytochrome c biogenes 100.0 1.2E-34 2.7E-39 310.8 20.6 194 900-1147 14-212 (214)
298 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.9E-34 6.3E-39 315.2 23.5 199 905-1161 1-207 (246)
299 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-34 2.7E-39 380.8 23.6 216 900-1157 762-989 (1394)
300 PRK13549 xylose transporter AT 100.0 1.5E-34 3.3E-39 347.0 22.2 222 900-1160 262-493 (506)
301 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.4E-34 5.1E-39 311.0 21.4 196 900-1154 25-224 (224)
302 PRK13541 cytochrome c biogenes 100.0 1E-34 2.2E-39 307.0 17.9 188 900-1143 4-193 (195)
303 PRK13545 tagH teichoic acids e 100.0 4.3E-34 9.3E-39 338.4 24.0 212 900-1171 24-242 (549)
304 COG0444 DppD ABC-type dipeptid 100.0 5.8E-34 1.3E-38 316.8 23.0 231 900-1173 4-257 (316)
305 PRK09700 D-allose transporter 100.0 1.8E-34 3.9E-39 346.5 20.1 221 900-1158 268-495 (510)
306 TIGR01257 rim_protein retinal- 100.0 5.1E-34 1.1E-38 376.9 25.3 218 895-1162 928-1150(2272)
307 COG1123 ATPase components of v 100.0 8E-34 1.7E-38 335.0 23.5 228 900-1169 8-253 (539)
308 PRK15177 Vi polysaccharide exp 100.0 8E-34 1.7E-38 305.1 19.6 191 913-1166 2-197 (213)
309 COG4172 ABC-type uncharacteriz 100.0 1.3E-33 2.8E-38 317.0 22.0 228 900-1168 279-524 (534)
310 PRK11819 putative ABC transpor 100.0 2E-33 4.4E-38 340.9 25.4 213 900-1161 9-250 (556)
311 COG0410 LivF ABC-type branched 100.0 1.4E-33 3E-38 300.8 20.8 219 900-1164 6-229 (237)
312 KOG0060|consensus 100.0 2.4E-32 5.1E-37 317.9 32.7 365 735-1147 250-641 (659)
313 cd03236 ABC_RNaseL_inhibitor_d 100.0 6.8E-34 1.5E-38 313.9 17.9 201 901-1153 4-219 (255)
314 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-33 2.6E-38 342.6 21.8 230 900-1161 7-248 (552)
315 PRK10762 D-ribose transporter 100.0 1.6E-33 3.5E-38 337.7 22.4 217 900-1160 260-483 (501)
316 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-33 2.5E-38 338.7 20.2 220 900-1158 260-489 (500)
317 PRK11288 araG L-arabinose tran 100.0 9.8E-34 2.1E-38 339.6 18.8 218 900-1160 260-484 (501)
318 PRK15064 ABC transporter ATP-b 100.0 4.1E-33 9E-38 336.3 23.0 223 900-1161 4-242 (530)
319 COG4608 AppF ABC-type oligopep 100.0 1.7E-33 3.8E-38 307.4 17.4 178 912-1170 27-209 (268)
320 TIGR01257 rim_protein retinal- 100.0 5.5E-33 1.2E-37 367.2 25.2 216 900-1163 1940-2161(2272)
321 COG4181 Predicted ABC-type tra 100.0 2.3E-33 5E-38 285.8 16.4 195 911-1153 23-227 (228)
322 PRK15064 ABC transporter ATP-b 100.0 6.4E-33 1.4E-37 334.7 23.1 202 896-1164 320-528 (530)
323 COG4148 ModC ABC-type molybdat 100.0 2.3E-33 4.9E-38 303.8 16.2 186 933-1163 27-220 (352)
324 COG4559 ABC-type hemin transpo 100.0 8E-33 1.7E-37 290.3 19.0 218 900-1163 4-232 (259)
325 COG1129 MglA ABC-type sugar tr 100.0 1.1E-32 2.3E-37 323.6 22.1 208 900-1155 11-228 (500)
326 PRK15439 autoinducer 2 ABC tra 100.0 5.4E-33 1.2E-37 334.0 19.0 216 900-1162 271-493 (510)
327 COG4598 HisP ABC-type histidin 100.0 1.4E-32 3.1E-37 281.5 16.1 216 900-1163 9-243 (256)
328 COG0411 LivG ABC-type branched 100.0 1.4E-32 3.1E-37 295.0 16.4 230 900-1163 7-241 (250)
329 PRK10982 galactose/methyl gala 100.0 5.1E-32 1.1E-36 323.9 21.7 218 900-1158 253-477 (491)
330 PRK10938 putative molybdenum t 100.0 2.6E-32 5.7E-37 326.3 17.7 216 896-1154 261-485 (490)
331 PLN03140 ABC transporter G fam 100.0 1.1E-31 2.3E-36 352.7 23.8 219 895-1156 867-1105(1470)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.3E-31 2.9E-36 271.4 17.3 141 900-1149 3-144 (144)
333 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-31 2.6E-36 352.6 21.2 216 910-1160 73-299 (1394)
334 PLN03073 ABC transporter F fam 100.0 5.9E-31 1.3E-35 326.4 23.0 202 896-1159 509-712 (718)
335 COG1137 YhbG ABC-type (unclass 100.0 4.4E-32 9.4E-37 282.7 10.8 220 900-1163 7-230 (243)
336 COG4161 ArtP ABC-type arginine 100.0 2.9E-31 6.3E-36 267.9 16.3 214 900-1161 5-230 (242)
337 PRK11819 putative ABC transpor 100.0 6.6E-31 1.4E-35 319.0 22.7 205 896-1162 325-534 (556)
338 cd00267 ABC_ATPase ABC (ATP-bi 100.0 6.6E-31 1.4E-35 268.4 18.1 154 900-1149 2-157 (157)
339 COG4525 TauB ABC-type taurine 100.0 6.8E-31 1.5E-35 272.5 17.7 204 900-1155 6-218 (259)
340 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.1E-30 2.5E-35 316.7 22.7 204 896-1161 323-531 (552)
341 PRK10636 putative ABC transpor 100.0 1.1E-30 2.4E-35 321.5 22.2 197 900-1160 315-516 (638)
342 PRK11147 ABC transporter ATPas 100.0 1.5E-30 3.3E-35 320.4 22.9 202 900-1161 322-528 (635)
343 COG3845 ABC-type uncharacteriz 100.0 8.3E-31 1.8E-35 302.6 18.5 207 900-1154 7-222 (501)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 1.2E-30 2.5E-35 273.8 17.5 161 900-1166 3-168 (177)
345 PLN03140 ABC transporter G fam 100.0 7E-31 1.5E-35 345.0 19.0 230 910-1161 177-427 (1470)
346 PRK13409 putative ATPase RIL; 100.0 2.3E-30 5E-35 315.6 21.5 192 900-1157 343-538 (590)
347 cd03238 ABC_UvrA The excision 100.0 1.9E-30 4.2E-35 271.9 17.6 160 911-1154 8-176 (176)
348 COG4604 CeuD ABC-type enteroch 100.0 2.4E-30 5.1E-35 269.0 12.0 226 900-1170 4-233 (252)
349 PRK10636 putative ABC transpor 100.0 3.4E-29 7.5E-34 308.4 23.4 223 900-1161 4-236 (638)
350 PRK13409 putative ATPase RIL; 100.0 5.9E-30 1.3E-34 312.0 15.1 192 902-1148 78-287 (590)
351 PRK11147 ABC transporter ATPas 100.0 1.1E-28 2.3E-33 304.0 24.8 218 900-1161 6-243 (635)
352 COG1101 PhnK ABC-type uncharac 100.0 1.5E-29 3.2E-34 266.4 14.5 207 910-1153 18-230 (263)
353 COG4167 SapF ABC-type antimicr 100.0 9.2E-29 2E-33 254.1 18.4 224 913-1177 28-257 (267)
354 KOG0061|consensus 100.0 1E-28 2.2E-33 302.1 19.7 221 900-1161 28-260 (613)
355 COG4172 ABC-type uncharacteriz 100.0 3.4E-28 7.4E-33 273.6 21.6 234 900-1171 9-258 (534)
356 PF00005 ABC_tran: ABC transpo 100.0 2.3E-29 4.9E-34 249.9 10.6 136 914-1103 1-137 (137)
357 PLN03073 ABC transporter F fam 100.0 2.8E-28 6.1E-33 302.6 18.2 231 895-1161 177-431 (718)
358 COG1119 ModF ABC-type molybden 99.9 2.3E-27 4.9E-32 255.2 18.2 217 896-1155 32-256 (257)
359 COG0488 Uup ATPase components 99.9 8.8E-27 1.9E-31 279.2 23.3 222 900-1162 6-241 (530)
360 COG0396 sufC Cysteine desulfur 99.9 2.4E-26 5.2E-31 244.9 20.8 221 900-1161 6-233 (251)
361 cd03270 ABC_UvrA_I The excisio 99.9 9.4E-27 2E-31 252.7 16.7 86 1069-1154 132-226 (226)
362 cd03271 ABC_UvrA_II The excisi 99.9 7.9E-27 1.7E-31 258.4 14.2 94 1063-1156 157-261 (261)
363 cd03278 ABC_SMC_barmotin Barmo 99.9 2.1E-26 4.6E-31 245.3 15.0 159 922-1146 18-189 (197)
364 KOG0064|consensus 99.9 2.5E-23 5.3E-28 239.9 40.1 198 900-1145 484-681 (728)
365 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.5E-26 7.5E-31 249.1 14.7 181 930-1146 23-234 (243)
366 COG1134 TagH ABC-type polysacc 99.9 1.8E-25 3.9E-30 240.8 19.9 196 909-1162 38-237 (249)
367 COG4152 ABC-type uncharacteriz 99.9 9.3E-26 2E-30 241.4 15.4 212 900-1163 5-221 (300)
368 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.9E-26 6.2E-31 246.4 11.4 174 926-1150 24-211 (213)
369 COG4674 Uncharacterized ABC-ty 99.9 1.4E-25 3E-30 233.3 14.2 225 900-1162 8-236 (249)
370 COG4136 ABC-type uncharacteriz 99.9 1.4E-25 3.1E-30 224.8 13.0 193 900-1142 5-204 (213)
371 COG0488 Uup ATPase components 99.9 3.8E-25 8.2E-30 265.2 19.1 200 900-1163 324-527 (530)
372 cd03273 ABC_SMC2_euk Eukaryoti 99.9 5.1E-25 1.1E-29 242.2 12.4 187 933-1149 28-247 (251)
373 COG4107 PhnK ABC-type phosphon 99.9 1.1E-23 2.5E-28 215.3 15.9 230 900-1171 9-252 (258)
374 COG4133 CcmA ABC-type transpor 99.9 6.8E-24 1.5E-28 220.3 12.7 178 911-1137 15-194 (209)
375 KOG0059|consensus 99.9 1.6E-23 3.4E-28 266.3 17.4 220 900-1166 567-792 (885)
376 COG4586 ABC-type uncharacteriz 99.9 1E-23 2.2E-28 229.0 12.3 213 912-1170 38-255 (325)
377 cd03240 ABC_Rad50 The catalyti 99.9 1E-23 2.2E-28 225.8 12.2 155 932-1147 24-197 (204)
378 COG4778 PhnL ABC-type phosphon 99.9 6.1E-23 1.3E-27 209.6 11.4 188 911-1146 24-226 (235)
379 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.4E-23 5.3E-28 224.3 9.1 173 931-1147 26-204 (212)
380 PRK00635 excinuclease ABC subu 99.9 6.1E-22 1.3E-26 259.6 22.4 102 1063-1164 797-909 (1809)
381 PRK00349 uvrA excinuclease ABC 99.9 1.4E-22 3E-27 256.3 15.2 106 1063-1168 818-934 (943)
382 cd03275 ABC_SMC1_euk Eukaryoti 99.9 6.9E-23 1.5E-27 225.1 10.9 181 932-1146 24-232 (247)
383 KOG0065|consensus 99.9 7.2E-23 1.6E-27 256.9 11.1 206 910-1156 803-1016(1391)
384 COG4138 BtuD ABC-type cobalami 99.9 1.3E-22 2.8E-27 208.0 3.7 194 922-1163 20-223 (248)
385 TIGR00630 uvra excinuclease AB 99.9 4.8E-21 1E-25 242.0 18.4 97 1063-1159 816-923 (924)
386 COG1129 MglA ABC-type sugar tr 99.8 9.5E-21 2.1E-25 223.3 17.2 199 913-1153 274-482 (500)
387 KOG0056|consensus 99.8 4.4E-22 9.6E-27 227.4 4.6 141 12-184 96-236 (790)
388 KOG0927|consensus 99.8 4.5E-21 9.8E-26 223.1 11.2 195 900-1156 392-591 (614)
389 cd01128 rho_factor Transcripti 99.8 5.1E-21 1.1E-25 211.0 9.2 206 924-1174 10-230 (249)
390 PF00664 ABC_membrane: ABC tra 99.8 1.3E-17 2.9E-22 177.2 34.3 215 630-845 61-275 (275)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.8 8.3E-20 1.8E-24 194.9 10.8 79 1071-1149 106-192 (198)
392 COG3845 ABC-type uncharacteriz 99.8 1.2E-18 2.7E-23 202.3 17.0 219 900-1158 260-489 (501)
393 cd03239 ABC_SMC_head The struc 99.8 1.1E-18 2.3E-23 183.7 14.4 85 1057-1147 83-172 (178)
394 KOG0927|consensus 99.8 6.9E-19 1.5E-23 205.1 12.8 231 895-1161 75-309 (614)
395 COG1245 Predicted ATPase, RNas 99.8 1.7E-18 3.6E-23 198.3 14.7 184 903-1146 341-530 (591)
396 KOG0062|consensus 99.8 5.2E-18 1.1E-22 197.0 16.1 208 900-1175 365-576 (582)
397 KOG0066|consensus 99.8 5.1E-18 1.1E-22 192.1 14.2 198 900-1158 589-788 (807)
398 cd03241 ABC_RecN RecN ATPase i 99.7 6.4E-18 1.4E-22 189.0 12.9 76 1074-1149 170-249 (276)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.7 6.4E-18 1.4E-22 182.5 11.8 94 1055-1149 108-211 (213)
400 cd03280 ABC_MutS2 MutS2 homolo 99.7 1.7E-17 3.8E-22 176.9 11.4 80 1073-1153 90-171 (200)
401 KOG0065|consensus 99.7 2E-17 4.4E-22 208.5 13.7 214 911-1161 128-351 (1391)
402 KOG0062|consensus 99.7 1.9E-17 4.1E-22 192.4 10.5 201 900-1162 83-286 (582)
403 COG4170 SapD ABC-type antimicr 99.7 1.1E-16 2.3E-21 168.5 11.5 220 913-1170 22-258 (330)
404 COG0178 UvrA Excinuclease ATPa 99.7 6.5E-16 1.4E-20 187.0 16.7 105 1067-1171 815-929 (935)
405 cd03227 ABC_Class2 ABC-type Cl 99.7 1.8E-16 4E-21 163.8 8.8 73 1075-1147 78-155 (162)
406 PRK00635 excinuclease ABC subu 99.6 1.7E-15 3.6E-20 199.9 18.2 105 1061-1166 1687-1801(1809)
407 COG2401 ABC-type ATPase fused 99.6 6.4E-16 1.4E-20 175.4 12.1 179 911-1151 396-588 (593)
408 cd03242 ABC_RecF RecF is a rec 99.6 1.7E-15 3.7E-20 169.0 14.1 88 1060-1150 165-269 (270)
409 TIGR00630 uvra excinuclease AB 99.6 1.6E-15 3.4E-20 192.4 14.9 95 1068-1162 481-584 (924)
410 TIGR00606 rad50 rad50. This fa 99.6 1.6E-15 3.4E-20 200.9 14.1 118 989-1145 1153-1288(1311)
411 PRK00349 uvrA excinuclease ABC 99.6 2.2E-15 4.8E-20 191.4 14.3 94 1069-1162 484-586 (943)
412 COG1245 Predicted ATPase, RNas 99.6 3.3E-15 7.2E-20 171.6 11.5 190 902-1146 79-287 (591)
413 TIGR02858 spore_III_AA stage I 99.6 2.7E-15 5.8E-20 167.6 10.5 141 932-1160 113-268 (270)
414 cd03285 ABC_MSH2_euk MutS2 hom 99.6 2.4E-15 5.2E-20 163.6 9.0 82 1073-1155 88-175 (222)
415 cd03243 ABC_MutS_homologs The 99.5 2.7E-14 5.8E-19 152.6 10.2 86 1073-1159 90-177 (202)
416 KOG2355|consensus 99.5 9.7E-14 2.1E-18 146.3 13.5 217 894-1161 12-240 (291)
417 cd00820 PEPCK_HprK Phosphoenol 99.5 1.4E-14 3E-19 140.6 5.1 75 912-1000 3-77 (107)
418 PHA02562 46 endonuclease subun 99.5 9.2E-14 2E-18 169.3 8.3 106 1043-1150 432-555 (562)
419 cd03283 ABC_MutS-like MutS-lik 99.4 2.3E-13 5.1E-18 145.8 9.1 132 931-1145 26-163 (199)
420 PF02463 SMC_N: RecF/RecN/SMC 99.4 1E-12 2.2E-17 141.5 9.8 72 1074-1145 136-211 (220)
421 PRK00064 recF recombination pr 99.4 8.1E-12 1.7E-16 145.3 17.3 76 1073-1150 272-359 (361)
422 cd03284 ABC_MutS1 MutS1 homolo 99.3 4.8E-12 1E-16 137.4 8.3 75 1084-1159 99-179 (216)
423 TIGR00634 recN DNA repair prot 99.2 1.8E-11 3.8E-16 150.1 10.9 77 1073-1149 439-519 (563)
424 KOG0063|consensus 99.2 2.8E-11 6E-16 138.7 11.6 208 904-1170 342-557 (592)
425 PTZ00132 GTP-binding nuclear p 99.2 1.1E-11 2.3E-16 133.1 7.8 44 1078-1121 156-204 (215)
426 cd03282 ABC_MSH4_euk MutS4 hom 99.2 2.1E-11 4.6E-16 131.4 9.9 72 1068-1140 85-158 (204)
427 KOG0066|consensus 99.2 1.4E-11 3E-16 140.6 8.5 206 911-1156 277-494 (807)
428 PRK10869 recombination and rep 99.2 4.4E-11 9.6E-16 146.1 10.5 76 1074-1149 430-509 (553)
429 smart00534 MUTSac ATPase domai 99.1 5.1E-11 1.1E-15 126.1 6.9 72 1069-1141 56-130 (185)
430 PRK13695 putative NTPase; Prov 99.1 6E-11 1.3E-15 123.9 5.0 81 1070-1153 74-156 (174)
431 cd03281 ABC_MSH5_euk MutS5 hom 99.1 6.3E-10 1.4E-14 120.7 10.8 63 1078-1140 94-161 (213)
432 PRK07721 fliI flagellum-specif 99.0 3.1E-09 6.7E-14 126.4 16.1 167 922-1157 153-339 (438)
433 TIGR00611 recf recF protein. A 99.0 2.7E-09 5.8E-14 124.6 15.1 63 1073-1137 274-345 (365)
434 TIGR02788 VirB11 P-type DNA tr 99.0 8E-10 1.7E-14 126.1 9.3 142 922-1161 139-281 (308)
435 COG0178 UvrA Excinuclease ATPa 99.0 3.8E-09 8.3E-14 129.4 14.2 112 1058-1170 466-586 (935)
436 PRK01156 chromosome segregatio 99.0 1.4E-09 3.1E-14 140.1 10.6 76 1071-1146 798-883 (895)
437 TIGR02168 SMC_prok_B chromosom 98.9 1.3E-09 2.9E-14 142.6 9.0 75 1071-1145 1086-1164(1179)
438 PRK14079 recF recombination pr 98.9 1.1E-08 2.4E-13 118.9 15.4 75 1073-1152 262-345 (349)
439 PRK03918 chromosome segregatio 98.9 2.1E-09 4.6E-14 138.0 10.0 74 1073-1146 787-867 (880)
440 PRK13830 conjugal transfer pro 98.9 6.3E-09 1.4E-13 132.8 12.7 68 1089-1156 649-728 (818)
441 TIGR01069 mutS2 MutS2 family p 98.9 2.5E-09 5.3E-14 135.2 8.4 64 1072-1136 383-448 (771)
442 cd01131 PilT Pilus retraction 98.9 4.3E-09 9.4E-14 112.7 7.6 57 1084-1146 66-122 (198)
443 TIGR02169 SMC_prok_A chromosom 98.8 5.1E-09 1.1E-13 137.6 9.4 85 1062-1146 1056-1150(1164)
444 cd01124 KaiC KaiC is a circadi 98.8 2.8E-08 6E-13 103.8 13.0 81 1066-1146 63-163 (187)
445 TIGR00618 sbcc exonuclease Sbc 98.8 8.5E-09 1.8E-13 135.0 10.8 76 1073-1148 949-1036(1042)
446 PRK08533 flagellar accessory p 98.8 2.7E-08 5.8E-13 109.3 11.5 71 1075-1146 96-184 (230)
447 PRK00409 recombination and DNA 98.8 9.4E-09 2E-13 130.2 8.4 81 1070-1151 386-468 (782)
448 KOG0063|consensus 98.8 1.9E-08 4.1E-13 116.0 9.2 73 1073-1145 212-286 (592)
449 PRK00300 gmk guanylate kinase; 98.7 1.6E-08 3.4E-13 107.9 7.6 67 930-1002 5-83 (205)
450 cd01120 RecA-like_NTPases RecA 98.7 8.2E-08 1.8E-12 96.4 11.4 62 1075-1136 68-140 (165)
451 PF13304 AAA_21: AAA domain; P 98.7 4.8E-08 1E-12 102.7 9.3 63 1074-1136 236-302 (303)
452 cd03287 ABC_MSH3_euk MutS3 hom 98.7 4.4E-08 9.6E-13 107.1 9.3 45 912-962 19-64 (222)
453 PRK02224 chromosome segregatio 98.7 4.7E-08 1E-12 126.0 9.5 76 1073-1148 780-869 (880)
454 smart00382 AAA ATPases associa 98.7 9E-07 2E-11 85.0 16.0 63 1070-1132 56-125 (148)
455 PRK06793 fliI flagellum-specif 98.6 1E-07 2.2E-12 113.0 10.7 147 925-1155 151-305 (432)
456 PRK10246 exonuclease subunit S 98.6 1.3E-07 2.8E-12 123.8 9.4 76 1072-1147 947-1032(1047)
457 TIGR03238 dnd_assoc_3 dnd syst 98.5 1E-07 2.2E-12 113.2 6.0 67 912-987 20-87 (504)
458 PRK13891 conjugal transfer pro 98.4 4.2E-06 9.1E-11 107.8 18.4 54 1085-1138 680-735 (852)
459 PRK06067 flagellar accessory p 98.4 2E-06 4.4E-11 94.1 13.4 73 1074-1146 100-186 (234)
460 PF06472 ABC_membrane_2: ABC t 98.3 0.00045 9.7E-09 78.3 28.8 136 668-804 127-263 (281)
461 PRK01889 GTPase RsgA; Reviewed 98.3 8.4E-07 1.8E-11 103.6 6.3 77 920-1002 188-264 (356)
462 PRK10733 hflB ATP-dependent me 98.3 1.1E-07 2.3E-12 118.7 -2.1 97 747-844 40-144 (644)
463 cd01125 repA Hexameric Replica 98.2 1.2E-06 2.6E-11 96.3 5.9 44 1089-1133 108-159 (239)
464 TIGR01420 pilT_fam pilus retra 98.2 3E-06 6.6E-11 98.4 9.3 55 1083-1143 186-240 (343)
465 cd03286 ABC_MSH6_euk MutS6 hom 98.2 6.7E-06 1.4E-10 90.0 10.9 49 1091-1139 108-159 (218)
466 TIGR02524 dot_icm_DotB Dot/Icm 98.2 1.6E-06 3.4E-11 101.3 6.4 73 930-1004 134-214 (358)
467 cd01130 VirB11-like_ATPase Typ 98.2 2.8E-06 6.1E-11 90.2 6.3 72 922-999 20-94 (186)
468 PRK06002 fliI flagellum-specif 98.1 2.7E-06 5.8E-11 101.4 6.2 82 900-988 142-230 (450)
469 PRK10078 ribose 1,5-bisphospho 98.1 2.8E-06 6E-11 90.0 5.1 55 930-987 2-56 (186)
470 TIGR00101 ureG urease accessor 98.1 3.8E-06 8.3E-11 90.5 5.5 57 932-989 3-59 (199)
471 COG3910 Predicted ATPase [Gene 98.0 3.2E-05 6.9E-10 82.1 11.4 83 1074-1158 129-213 (233)
472 TIGR02868 CydC thiol reductant 98.0 0.0004 8.7E-09 85.0 22.6 106 391-518 14-119 (529)
473 TIGR02322 phosphon_PhnN phosph 98.0 1.1E-05 2.4E-10 84.4 7.9 62 930-992 1-78 (179)
474 PRK09825 idnK D-gluconate kina 98.0 5.3E-06 1.1E-10 87.7 4.0 66 930-1001 3-70 (176)
475 TIGR02680 conserved hypothetic 98.0 1.1E-05 2.5E-10 108.2 8.0 61 1071-1133 1244-1316(1353)
476 PF09818 ABC_ATPase: Predicted 97.9 9.2E-05 2E-09 87.5 13.8 100 1049-1150 298-416 (448)
477 cd00071 GMPK Guanosine monopho 97.9 2.4E-06 5.3E-11 86.6 0.8 64 933-1002 2-78 (137)
478 TIGR03263 guanyl_kin guanylate 97.9 5E-06 1.1E-10 86.9 2.9 76 930-1014 1-88 (180)
479 PRK07196 fliI flagellum-specif 97.9 8E-06 1.7E-10 97.2 4.8 83 916-999 142-234 (434)
480 cd00009 AAA The AAA+ (ATPases 97.9 7.5E-05 1.6E-09 72.7 10.7 54 1080-1134 72-131 (151)
481 PRK06995 flhF flagellar biosyn 97.9 3.9E-05 8.4E-10 92.6 10.1 51 931-1000 257-307 (484)
482 COG2274 SunT ABC-type bacterio 97.9 0.0045 9.8E-08 78.5 28.6 112 373-512 142-254 (709)
483 cd02023 UMPK Uridine monophosp 97.9 1E-05 2.3E-10 86.2 4.3 22 933-954 2-23 (198)
484 PRK13898 type IV secretion sys 97.9 0.00012 2.5E-09 94.2 14.2 60 1088-1147 638-709 (800)
485 PLN03210 Resistant to P. syrin 97.9 3.9E-05 8.4E-10 102.1 10.0 36 931-966 208-244 (1153)
486 PRK03846 adenylylsulfate kinas 97.8 1.1E-05 2.4E-10 86.4 3.9 55 929-987 23-78 (198)
487 TIGR00767 rho transcription te 97.8 2.1E-05 4.5E-10 92.5 5.5 57 893-957 128-195 (415)
488 PRK13873 conjugal transfer ATP 97.8 0.00022 4.7E-09 91.9 14.7 63 1087-1149 630-704 (811)
489 COG0419 SbcC ATPase involved i 97.8 6E-05 1.3E-09 98.1 9.4 76 1073-1148 814-898 (908)
490 PF13558 SbcCD_C: Putative exo 97.8 3.4E-05 7.4E-10 73.1 5.3 59 1061-1119 19-90 (90)
491 TIGR02655 circ_KaiC circadian 97.8 6.8E-06 1.5E-10 99.7 0.5 64 1073-1146 114-190 (484)
492 PRK08149 ATP synthase SpaL; Va 97.7 2.4E-05 5.2E-10 93.1 4.9 73 913-986 135-214 (428)
493 TIGR00152 dephospho-CoA kinase 97.7 4.4E-05 9.5E-10 81.0 6.3 69 1078-1148 61-133 (188)
494 TIGR00235 udk uridine kinase. 97.7 1.5E-05 3.3E-10 85.8 2.3 28 929-956 5-32 (207)
495 TIGR02204 MsbA_rel ABC transpo 97.7 0.013 2.8E-07 72.6 27.4 118 372-518 5-124 (576)
496 PRK00454 engB GTP-binding prot 97.7 0.0003 6.5E-09 73.9 11.3 51 1068-1122 141-194 (196)
497 cd04104 p47_IIGP_like p47 (47- 97.7 0.00012 2.5E-09 78.4 8.1 34 932-965 3-36 (197)
498 TIGR03797 NHPM_micro_ABC2 NHPM 97.6 0.014 3.1E-07 73.9 27.9 103 390-515 136-239 (686)
499 TIGR02903 spore_lon_C ATP-depe 97.6 0.00015 3.2E-09 90.6 10.0 37 933-969 178-222 (615)
500 PRK05480 uridine/cytidine kina 97.6 5.8E-05 1.3E-09 81.2 5.5 42 930-992 6-47 (209)
No 1
>KOG0056|consensus
Probab=100.00 E-value=9.9e-180 Score=1502.83 Aligned_cols=748 Identities=49% Similarity=0.793 Sum_probs=706.8
Q ss_pred cccCCCCCcccccccccCcCccchhhhhhhHHHHHHHHHhhhhhhhhhcccccccc---cCcchhHHHHHHHHHHHHHHH
Q psy13234 187 MEFCPPNISFFDVWVNHGTSACFMDTVSSSILATFLLLFGGTQLWMYKKYSNRATN---VLPSKLYYFQIFMSVLMCLVV 263 (1192)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 263 (1192)
+.|||||+ +|.+| |+||++|+.|+.-.++..+|+.+|+.|||+|.+...+ ...|++|..|++++.+++++.
T Consensus 1 ~~yc~aeg----~w~q~--s~cf~~t~~p~~~~~~~~lf~vl~lp~~r~~~~~~~d~t~~~as~l~~~ql~~~~~~~~l~ 74 (790)
T KOG0056|consen 1 LDYCRAEG----LWPQG--SSCFKITSFPVYTFFIVVLFIVLCLPNSRSANNNYRDMTDDDASKLTISQLLLICLIFALI 74 (790)
T ss_pred CCcCcccc----ccccC--CCceEEEeccceeehHHHHHHHhhcccccccccccCCcccccccchhHHHHHHHHHHHHHH
Confidence 47999999 99999 9999999999999999999999999999999988765 789999999999999999999
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhhhhhhHhhHHHHhhhhhhcccCCCCCCCCCchHHHHHHHHHHHHhhhhhccccccc
Q psy13234 264 VVKYALEAALIHQRTLFMYQIVSGGLLLFSFTFATYLVSLERNYRLPTAPPQGHGLVLLVFWTMLLIFANLTFVNLKRLD 343 (1192)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1192)
++++...+..+.+.++++|++.++|...++|+|+++++.+||+ +|+.|+ +|++|+.+|+.||+++++|++
T Consensus 75 l~~~~~~~~t~~~~~~~~~ll~~~~~~~~~~~~~l~~~~~~r~--~~~~~~------ll~~~t~a~~~~~l~~~~~~~-- 144 (790)
T KOG0056|consen 75 LQSIFYFCFTFYFHPYTHYLLAFCVSKLFFWILSLCLFSKERN--QPSTPI------LLLAWTAAFLIECLALTDWKK-- 144 (790)
T ss_pred HHHHHhhheeccCCchhHHHHHHhhHHHHhcccccceeeeecc--cccchH------HHHHHHHHHHHhhhHHHhHHH--
Confidence 9999999999999999999999999999999999999999999 888877 999999999999999999999
Q ss_pred cccccccccc---c---------------------hhh--hcccCCCchHhHHHHhhhhcccccCCCCcchHHHHHHHHH
Q psy13234 344 WWFSLKTQNN---L---------------------ESE--RLMHTGSTWAGAAKKIKTLAPFLWPKKSALLKLQVIICIL 397 (1192)
Q Consensus 344 ~~~~~~~~~~---~---------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 397 (1192)
|.+.|..| + +|. .....+++|++.++|.++..||+||+++..+|++|++|++
T Consensus 145 --~~~~t~~~q~~l~~~v~~~~~s~~~fvl~l~a~~~ndt~~~s~~s~~~n~~rk~~~~~~ylwp~~~~alql~v~~cl~ 222 (790)
T KOG0056|consen 145 --YFEPTSKNQGDLTLYVIRLALSTVVFVLGLVAPLDNDSGCSSRESAWRNLSRKLRTVAPYLWPTKSIALQLRVVFCLF 222 (790)
T ss_pred --HhcccccccchhHHHHHHHHHHHeeeeEEEeccccccccccccccccccccceeEEeccccccCCCcchhHHHHHHHH
Confidence 44444443 1 111 1224789999999999999999999999999999999999
Q ss_pred HHHHhhhheecccchhhhhhHHHHHhhhccccccccCccCCCCcccchhHHHHHHHHHhhcCCCCcccchhhhhhhhhhh
Q psy13234 398 LLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWI 477 (1192)
Q Consensus 398 ~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~ 477 (1192)
|++++|++|+.+|++.|++| |.|+ +|.++.|+.+..||++|||||||+|+ |++|||||||||
T Consensus 223 ll~i~rli~~~~pi~~k~iv----------------~~lt-ap~~~~~~~~~~~v~L~flqg~gtgs-G~~~nlRtfLWi 284 (790)
T KOG0056|consen 223 LLIIGRLINVSLPILSKWIV----------------DELT-APDTFQYSLVFLYVFLKFLQGGGTGS-GFLNNLRTFLWI 284 (790)
T ss_pred HHHHHHHHhhhhHHhHHHHH----------------Hhhc-CcchhhHHHHHHHHHHHHHhcCCccc-cchhhhheeEEE
Confidence 99999999999999999999 9998 78889999999999999999999999 999999999999
Q ss_pred heeccchhHHHHHHHHhhccccccccccccccceeeeeccCCcccccccceeeeeechhHHHHHHHHHHHHHHhHHHHHH
Q psy13234 478 GVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGV 557 (1192)
Q Consensus 478 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~vl~~~lF~~~~tivDili~ii~~i~af~~~fgl 557 (1192)
+|||||+||||+++|+|||+|||||||+||||||||+|||||+|++ ++.|.+|++.||+.|+.+++++|..+|++||++
T Consensus 285 ~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgL 363 (790)
T KOG0056|consen 285 PVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGL 363 (790)
T ss_pred EhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999988
Q ss_pred HHHHHHHhhhccccccccccccCCCchhhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy13234 558 IVFTTMALYLGKNTVGERGLKLSGGEKQRVAIALNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGV 637 (1192)
Q Consensus 558 Il~~~~~lYi~~~~ig~~G~~lSGGqkqri~~al~s~~~~~l~~~~~~vli~l~~~ii~~~~~~~~~~l~~~rs~l~~~v 637 (1192)
|+|++|..|.
T Consensus 364 IVfl~m~lY~---------------------------------------------------------------------- 373 (790)
T KOG0056|consen 364 IVFLMMLLYC---------------------------------------------------------------------- 373 (790)
T ss_pred HHHHHHHHHh----------------------------------------------------------------------
Confidence 8888777776
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy13234 638 QQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIV 717 (1192)
Q Consensus 638 ~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~~~~lalIv 717 (1192)
T Consensus 374 -------------------------------------------------------------------------------- 373 (790)
T KOG0056|consen 374 -------------------------------------------------------------------------------- 373 (790)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 718 FTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFL 797 (1192)
Q Consensus 718 l~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~~~l 797 (1192)
..++.+++||++.+|+|+.+.++..++..|++.|+||||+||+|++|.+||++++.+|++.+++...+..++
T Consensus 374 --------~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfL 445 (790)
T KOG0056|consen 374 --------YVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFL 445 (790)
T ss_pred --------heeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccc
Q psy13234 798 NSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTISCI 877 (1192)
Q Consensus 798 ~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~~~~~~~ 877 (1192)
|..|+.+++.|++++.++|+|. +..+..|+||+++|.+|+.|++.|+|++|++++.+|.+++++|+++++.++++
T Consensus 446 N~~Qn~Ii~lgll~gsll~aY~-Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~---- 520 (790)
T KOG0056|consen 446 NIVQNGIIGLGLLAGSLLCAYR-VTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEP---- 520 (790)
T ss_pred HHHhhhhhhhHHhhhhheeeee-eeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCc----
Confidence 9999999999999999999999 66889999999999999999999999999999999999999999999943321
Q ss_pred cccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13234 878 CHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE 957 (1192)
Q Consensus 878 ~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~ 957 (1192)
++.|.|+..+++...|.++ |+||+|+|++++|+++||| |++.||++ +|+|||||+||||++|+|+||||.+
T Consensus 521 -eVvd~P~a~pl~~~~G~i~--fsnvtF~Y~p~k~vl~dis---F~v~pGkt---vAlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 521 -EVVDLPGAPPLKVTQGKIE--FSNVTFAYDPGKPVLSDIS---FTVQPGKT---VALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred -hhhcCCCCCCccccCCeEE--EEEeEEecCCCCceeecce---EEecCCcE---EEEECCCCCchhHHHHHHHHHhhcc
Confidence 1556666555566668999 9999999999999999999 99999999 9999999999999999999999999
Q ss_pred CceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhh
Q psy13234 958 SGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARI 1037 (1192)
Q Consensus 958 sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~ 1037 (1192)
+|+|+|||+||+++++.|||++||+||||++|||+||.+||+||+|+|++|||++||
T Consensus 592 sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAA----------------------- 648 (790)
T KOG0056|consen 592 SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAA----------------------- 648 (790)
T ss_pred CceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy13234 1038 NASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL 1117 (1192)
Q Consensus 1038 ~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL 1117 (1192)
++|++||.|.++|+||+|+|||||.+||||||||+||||+++|+|.|++|||||||||+.||++||++|
T Consensus 649 -----------kAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 649 -----------KAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred -----------HHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHHHHHhhccC
Q psy13234 1118 NRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER-NGVYASMWIQQNTKQ 1177 (1192)
Q Consensus 1118 ~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L~~~Q~~~~ 1177 (1192)
.+++++||+|+|||||||+.+||.|+|++||+|+|+|+||||+++ +|.|++||+.|+...
T Consensus 718 ~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g 778 (790)
T KOG0056|consen 718 ARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQAMG 778 (790)
T ss_pred HHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999998 899999998777543
No 2
>KOG0057|consensus
Probab=100.00 E-value=3.9e-110 Score=961.41 Aligned_cols=577 Identities=38% Similarity=0.625 Sum_probs=512.9
Q ss_pred HHHhhhhcccccCCCCcchHHHHHHHHHHHHHhhhheecccchhhhhhHHHHHhhhccccccccCccCCCC--cccchhH
Q psy13234 370 AKKIKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKP--LVFRWDY 447 (1192)
Q Consensus 370 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 447 (1192)
++.++.++-|.|||+++.++++|+..+++++.+|..|++||..+|.++ |.+| ...+.| ...+-..
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~i-----------d~l~--~~~~~~a~~~~~~~~ 76 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLII-----------DGLN--DADGNPAVLSTITAL 76 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHH-----------hhhh--hcccCcchhhhhhHH
Confidence 678899999999999999999999999999999999999999999999 3333 111111 0112334
Q ss_pred HHHHHHHHhhcCCCCcccchhhhhhhhhhhheeccchhHHHHHHHHhhccccccccccccccceeeeeccCCcccccccc
Q psy13234 448 VLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLN 527 (1192)
Q Consensus 448 ~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~vl~ 527 (1192)
+..|..++. | ++.||++|+++|.+|.|+++|.+..++|+|+|+|+++||++|.||++.|+||||+.+|+.++.
T Consensus 77 ~~~y~iar~--~-----s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~ 149 (591)
T KOG0057|consen 77 LAGYGIARL--G-----SSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLS 149 (591)
T ss_pred HHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHH
Confidence 677887777 3 589999999999999999999999999999999999999999999999999999999877777
Q ss_pred eeeeeechhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccccccccccccCCCchhhhhhhhhccCCCCchhHHHHHH
Q psy13234 528 YVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLGKNTVGERGLKLSGGEKQRVAIALNSLVDKPLVFRWDYVL 607 (1192)
Q Consensus 528 ~~lF~~~~tivDili~ii~~i~af~~~fglIl~~~~~lYi~~~~ig~~G~~lSGGqkqri~~al~s~~~~~l~~~~~~vl 607 (1192)
-.+|+++|++..
T Consensus 150 ~~V~~i~p~~~~-------------------------------------------------------------------- 161 (591)
T KOG0057|consen 150 AMVFNIIPTLFE-------------------------------------------------------------------- 161 (591)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 666666333332
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHH
Q psy13234 608 IFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYV 687 (1192)
Q Consensus 608 i~l~~~ii~~~~~~~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~ 687 (1192)
T Consensus 162 -------------------------------------------------------------------------------- 161 (591)
T KOG0057|consen 162 -------------------------------------------------------------------------------- 161 (591)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhC
Q psy13234 688 LFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYG 767 (1192)
Q Consensus 688 l~~il~~l~diviaiv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg 767 (1192)
+.+....+...+.+.++++.+..+..|...+..++.||+++++++|++++....++.|++.|+++||+||
T Consensus 162 ----------i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfN 231 (591)
T KOG0057|consen 162 ----------IALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFN 231 (591)
T ss_pred ----------HHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcc
Confidence 2222222333455666677777777888888999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q psy13234 768 AEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNW 847 (1192)
Q Consensus 768 ~E~~~~~rf~~~~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~ 847 (1192)
.|++|.+||+....++.++..+...+.+++++.|.+++.......+.++... +.++.+|+|++++..+...|+..|+++
T Consensus 232 nE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~g-i~~~~mtvgdlv~~n~l~~qL~~~l~~ 310 (591)
T KOG0057|consen 232 NEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNG-IAAGKMTVGDLVMVNSLLFQLSLPLNF 310 (591)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhccccccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999988888888888777 778899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCC
Q psy13234 848 FDALTRYLEASLVPLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALES 927 (1192)
Q Consensus 848 l~~~~~~l~~a~~~~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~G 927 (1192)
++..++.+.+++.+++.++...+.+.. +.+. ..++...++.|+ |+||+|+|.+++++++++| |++++|
T Consensus 311 Lg~vyr~~~q~l~Dm~~~~~l~~~~~~-----i~~~--~~~i~~~~~~I~--F~dV~f~y~~k~~iL~gvs---f~I~kG 378 (591)
T KOG0057|consen 311 LGSVYRELRQALTDMRTLFILLEVDED-----IQEA--ALPIELFGGSIE--FDDVHFSYGPKRKVLKGVS---FTIPKG 378 (591)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhhh-----hhhc--cCCcccCCCcEE--EEeeEEEeCCCCceeccee---EEecCC
Confidence 999999999999998877665222200 1111 112222336788 9999999999999999999 999999
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCH
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASE 1007 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asd 1007 (1192)
++ |||||+|||||||++|+|+||+| ++|+|+|||+||++++++++|+.|||||||..|||+||.+||.||+|++++
T Consensus 379 ek---VaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~ 454 (591)
T KOG0057|consen 379 EK---VAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASD 454 (591)
T ss_pred CE---EEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCH
Confidence 99 99999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q psy13234 1008 EEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIAR 1087 (1192)
Q Consensus 1008 EeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALAR 1087 (1192)
|||.++| |++++||.|.++|+||+|.|||||..|||||||||||||
T Consensus 455 eeV~e~~----------------------------------k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 455 EEVVEAC----------------------------------KRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred HHHHHHH----------------------------------HHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHH
Q psy13234 1088 TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYA 1167 (1192)
Q Consensus 1088 ALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya 1167 (1192)
|++|||||+++|||||+||++||+.|.+.+.+...+||+|+|+||++++++||+|++|+||++.|+|+|+||+++++.|+
T Consensus 501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~ 580 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYA 580 (591)
T ss_pred HHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q psy13234 1168 SMWIQQNT 1175 (1192)
Q Consensus 1168 ~L~~~Q~~ 1175 (1192)
++|..|..
T Consensus 581 ~~w~~~~~ 588 (591)
T KOG0057|consen 581 DLWTTQTS 588 (591)
T ss_pred HHhccccc
Confidence 99988754
No 3
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-108 Score=921.93 Aligned_cols=495 Identities=47% Similarity=0.743 Sum_probs=455.3
Q ss_pred hhhhhhhheeccchhHHHHHHHHhhccccccccccccccceeeeeccCCcccccccceeeeeechhHHHHHHHHHHHHHH
Q psy13234 471 VRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVST 550 (1192)
Q Consensus 471 ~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~vl~~~lF~~~~tivDili~ii~~i~a 550 (1192)
||+.+|.+|.|+..|.+..+.|.|+|+||||||++|+||.+.|+|||||++|..++.|.+|+++|+.+|+.+...+
T Consensus 1 lr~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi---- 76 (497)
T COG5265 1 LRDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVI---- 76 (497)
T ss_pred CchHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHH----
Confidence 6899999999999999999999999999999999999999999999999999888888887776666664443333
Q ss_pred hHHHHHHHHHHHHHhhhccccccccccccCCCchhhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy13234 551 FSTWYGVIVFTTMALYLGKNTVGERGLKLSGGEKQRVAIALNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVR 630 (1192)
Q Consensus 551 f~~~fglIl~~~~~lYi~~~~ig~~G~~lSGGqkqri~~al~s~~~~~l~~~~~~vli~l~~~ii~~~~~~~~~~l~~~r 630 (1192)
T Consensus 77 -------------------------------------------------------------------------------- 76 (497)
T COG5265 77 -------------------------------------------------------------------------------- 76 (497)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13234 631 SLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFS 710 (1192)
Q Consensus 631 s~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~~ 710 (1192)
+...++
T Consensus 77 --------------------------------------------------------------------------~~~~~~ 82 (497)
T COG5265 77 --------------------------------------------------------------------------LWRVYG 82 (497)
T ss_pred --------------------------------------------------------------------------HHhhcc
Confidence 334456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q psy13234 711 TWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQN 790 (1192)
Q Consensus 711 ~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~ 790 (1192)
||+++++++++.+|.++++....|++..+|+++++++++++...|++-|+||||+||.|++|..||....+.|+++..+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 66666666777777777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Q psy13234 791 SLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKE 870 (1192)
Q Consensus 791 ~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~ 870 (1192)
..+..++++.|..+++.++...+...+.. +.+|++|+|++++..+++.|++.|+++++..++++.++..++|+++++.+
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~-v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALG-VEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHH-HhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 99999999999999999998888888887 88899999999999999999999999999999999999999999999843
Q ss_pred cccccccccccccccccccc-ccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHH
Q psy13234 871 CRTISCICHLTKAVTRIVLK-RIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRL 949 (1192)
Q Consensus 871 ~~~~~~~~~v~~~~~~i~l~-~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrL 949 (1192)
.+. ++.+.++..++. ...+.+. |++|+|.|.+.+++++++| |.+++|++ +||||+||+||||+.++
T Consensus 242 ~~~-----~v~d~pda~~L~~~~~g~v~--F~~V~F~y~~~r~iL~~is---f~i~~g~t---vAiVg~SG~gKsTI~rl 308 (497)
T COG5265 242 VEA-----EVSDAPDAPPLWPVRLGAVA--FINVSFAYDPRRPILNGIS---FTIPLGKT---VAIVGESGAGKSTILRL 308 (497)
T ss_pred cch-----hhccCCCCccccccccceEE--EEEEEeeccccchhhcCcc---ccccCccE---EEEEeCCCCcHHHHHHH
Confidence 331 133333322222 2235667 9999999999999999999 99999999 99999999999999999
Q ss_pred HhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCC
Q psy13234 950 LFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDG 1029 (1192)
Q Consensus 950 LlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~ 1029 (1192)
|+||||+++|+|.|||+||++++++++|+.||+||||++|||+||.+||+||+|++|+||+.+||
T Consensus 309 lfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa--------------- 373 (497)
T COG5265 309 LFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAA--------------- 373 (497)
T ss_pred HHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHH
Q psy13234 1030 YDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109 (1192)
Q Consensus 1030 ~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eT 1109 (1192)
++|++|++|.++|+||||.|||||.+||||||||+||||++||+|+|++|||||||||++|
T Consensus 374 -------------------~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~t 434 (497)
T COG5265 374 -------------------EAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHT 434 (497)
T ss_pred -------------------HHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1110 ERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1110 E~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
|++||++|++..++||+++||||||||.+||+|+||+||+|+|+|+|+||++++|.|++||.
T Consensus 435 e~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 435 EQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred HHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 4
>KOG0058|consensus
Probab=100.00 E-value=6.9e-102 Score=919.29 Aligned_cols=509 Identities=30% Similarity=0.450 Sum_probs=466.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 624 GVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIV 703 (1192)
Q Consensus 624 ~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv 703 (1192)
.+....|..++...++++..++|.++|+++++++.+|||++++||+++|++.|+..+.+-++..+...+...+..+.++.
T Consensus 202 a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~ 281 (716)
T KOG0058|consen 202 ALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLG 281 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34556677788889999999999999999999999999999999999999999999999999999999888887665554
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q psy13234 704 FFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTY 783 (1192)
Q Consensus 704 ~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~ 783 (1192)
+|+..+|.++++.++.+|+..++..++.++.++..++.+++.++++..+.|.+++++|||+|++|++|.+||.+..++.
T Consensus 282 -~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~ 360 (716)
T KOG0058|consen 282 -FMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREV 360 (716)
T ss_pred -HHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy13234 784 QVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLP 863 (1192)
Q Consensus 784 ~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~e 863 (1192)
.+...+.......+....++...+..+..+++|+++ +..|++|+|+++.|+.|..++..++..++.++..+.++.-+.+
T Consensus 361 ~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~L-v~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~ 439 (716)
T KOG0058|consen 361 LKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHL-VLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASE 439 (716)
T ss_pred HHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccch-hhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 888888888777777777777887788888888988 8999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccccccccccccccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCC
Q psy13234 864 KKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGA 941 (1192)
Q Consensus 864 rl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGS 941 (1192)
|++++.+.++. ++.. +...+.+.+|.|+ |+||+|+||. +.++++|+| |+++||++ ||+||||||
T Consensus 440 rvFel~dr~P~-----i~~~-G~~~p~~~~G~Ie--F~~VsFaYP~Rp~~~Vlk~ls---fti~pGe~---vALVGPSGs 505 (716)
T KOG0058|consen 440 RVFELMDRKPR-----IPLT-GTLAPDHLQGVIE--FEDVSFAYPTRPDVPVLKNLS---FTIRPGEV---VALVGPSGS 505 (716)
T ss_pred HHHHHhccCCC-----CCCC-CccccccccceEE--EEEeeeecCCCCCchhhcCce---eeeCCCCE---EEEECCCCC
Confidence 99988433210 1111 2111125668899 9999999986 457999999 99999999 999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhh
Q psy13234 942 GKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHE 1021 (1192)
Q Consensus 942 GKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~ 1021 (1192)
||||+++||.|||+|++|+|.+||+||++++..+||++||+|.|||+||++||+|||+||.+++++|||++||
T Consensus 506 GKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AA------- 578 (716)
T KOG0058|consen 506 GKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAA------- 578 (716)
T ss_pred CHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q psy13234 1022 RILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101 (1192)
Q Consensus 1022 ~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEA 1101 (1192)
+.|++||||.++|+||||.|||+|.+|||||||||||||||+|||+|||||||
T Consensus 579 ---------------------------k~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEA 631 (716)
T KOG0058|consen 579 ---------------------------KMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEA 631 (716)
T ss_pred ---------------------------HHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEech
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHHHHHhhccCCCC
Q psy13234 1102 TSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERN-GVYASMWIQQNTKQSEP 1180 (1192)
Q Consensus 1102 TSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L~~~Q~~~~~~~ 1180 (1192)
|||||+++|..||++|.+..++||||+||||||||++||+|+|+++|+|+|.|+|+||+++. |.|++|.++|.....++
T Consensus 632 TSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~~~~ 711 (716)
T KOG0058|consen 632 TSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSGEPG 711 (716)
T ss_pred hhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999887 89999999998766555
Q ss_pred CC
Q psy13234 1181 SS 1182 (1192)
Q Consensus 1181 ~~ 1182 (1192)
..
T Consensus 712 ~~ 713 (716)
T KOG0058|consen 712 AV 713 (716)
T ss_pred cc
Confidence 44
No 5
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.3e-92 Score=866.44 Aligned_cols=529 Identities=29% Similarity=0.415 Sum_probs=471.9
Q ss_pred hhhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Q psy13234 584 KQRVAIALNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLS 663 (1192)
Q Consensus 584 kqri~~al~s~~~~~l~~~~~~vli~l~~~ii~~~~~~~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~ 663 (1192)
++.+|.+....+.+++..+... .........++..+|+.+...++++.+.++..++|+|++++|++||.+
T Consensus 178 q~viD~Vl~~~~~~tL~vl~ig----------~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~ 247 (709)
T COG2274 178 QIVIDKVLPDASRSTLTVLAIG----------LLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK 247 (709)
T ss_pred HHHHHhhhccCchhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC
Confidence 6677888776666666432211 112223446778899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 664 RKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVF--FVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRK 741 (1192)
Q Consensus 664 ~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~--ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~ 741 (1192)
+++||+++|++ +++++.+++...++..++|+++++++ +++.++|.+++++++.++++.++..++....++..++
T Consensus 248 r~~Ge~~sR~~----el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~ 323 (709)
T COG2274 248 RSVGEIISRVR----ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRK 323 (709)
T ss_pred CChhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 55555555667888889998887765 5567899999999999999999998888877777777
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 742 MNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVV 821 (1192)
Q Consensus 742 ~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv 821 (1192)
.-+..+..++...|++.|++|||+.+.|+++..+|++...++.+..++........+....++..++.++.+++|+++ +
T Consensus 324 ~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~l-V 402 (709)
T COG2274 324 LIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAIL-V 402 (709)
T ss_pred HHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 777788889999999999999999999999999999999999999999999999998888888888888899999998 8
Q ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccccccccccccccc
Q psy13234 822 NNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENME 901 (1192)
Q Consensus 822 ~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fe 901 (1192)
.+|++|+|.+++|.++..++.+|+..+...+..+++...+.+|+.++.+.+.+ ..........++..++++ ++
T Consensus 403 l~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E-----~~~~~~~~~~~~~~g~I~--~~ 475 (709)
T COG2274 403 LEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE-----QEGDKTLIHLPKLQGEIE--FE 475 (709)
T ss_pred hcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----cccccccccccccCceEE--EE
Confidence 99999999999999999999999999999999999988888888877322210 000010233455668888 99
Q ss_pred cceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccE
Q psy13234 902 EDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAI 980 (1192)
Q Consensus 902 nVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~I 980 (1192)
|++|+|+.+ +++++++| +++++||+ +||||+||||||||+|+|.|+|+|++|+|++||+|+.+++.+++|++|
T Consensus 476 nvsf~y~~~~~~vL~~is---L~I~~Ge~---vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 476 NVSFRYGPDDPPVLEDLS---LEIPPGEK---VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred EEEEEeCCCCcchhhcee---EEeCCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 999999875 56999999 99999999 999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcC
Q psy13234 981 GVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSF 1060 (1192)
Q Consensus 981 g~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~L 1060 (1192)
||||||++||+|||+|||++++|++++||+++|| +.|++||+|+++
T Consensus 550 g~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~----------------------------------~~ag~~~fI~~l 595 (709)
T COG2274 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAA----------------------------------QLAGAHEFIENL 595 (709)
T ss_pred eEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHH----------------------------------HHhCcHHHHHhc
Confidence 9999999999999999999999999999999999 999999999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcC
Q psy13234 1061 PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHAD 1140 (1192)
Q Consensus 1061 P~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aD 1140 (1192)
|.||||+|||+|.+||||||||||||||+++||+||||||||||||++||+.|.++|.+..++||+|+||||++++++||
T Consensus 596 P~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ad 675 (709)
T COG2274 596 PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSAD 675 (709)
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1141 EILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1141 rIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
||+|||+|+|+|.|+|+||++.+|.|+++|+.|.
T Consensus 676 rIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q~ 709 (709)
T COG2274 676 RIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQE 709 (709)
T ss_pred EEEEccCCceeccCCHHHHHHhcChHHHHHhccC
Confidence 9999999999999999999999999999998773
No 6
>KOG0055|consensus
Probab=100.00 E-value=1.7e-92 Score=877.00 Aligned_cols=502 Identities=29% Similarity=0.440 Sum_probs=440.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-CChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 624 GVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLS-RKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702 (1192)
Q Consensus 624 ~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~-~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviai 702 (1192)
++...++.+++..++.++..++|.++|+++++++..|||. .++|.+.+|++.|...++......+..+++.+..++.++
T Consensus 721 ~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~i 800 (1228)
T KOG0055|consen 721 GITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGI 800 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677788999999999999999999999999999985 233999999999999999999999998888887766655
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q psy13234 703 VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQT 782 (1192)
Q Consensus 703 v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~ 782 (1192)
+ +.+.++|.++++++.+.|++.+..+...+..+...++..++..+....+.|++.|++||++|++|+++.+.|.+..++
T Consensus 801 i-iaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~ 879 (1228)
T KOG0055|consen 801 I-IAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEK 879 (1228)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4 456689999999999999988888888888888888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13234 783 YQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPL 862 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~ 862 (1192)
..+...+.+....+...+.+.++.+...+..+++.++ +.+|.+++.+++-.+..+..-...+.+..++...+..+..+.
T Consensus 880 p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~L-i~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 880 PRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARL-ISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAA 958 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 9999999988888888888877777788888888888 899999999886544444433333444445555555555555
Q ss_pred ccccccccccc-cccccccccccccccccccccccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcCC
Q psy13234 863 PKKTNAKECRT-ISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQS 939 (1192)
Q Consensus 863 erl~~~~~~~~-~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~S 939 (1192)
.+++++.+.++ .+ .+.+.....++.+|+|+ ++||+|+||. +.++++|+| +++++|++ +|+||||
T Consensus 959 ~~iF~i~dr~~~i~-----~~~~~~~~~~~~~G~I~--~~~V~F~YPsRP~~~Il~~l~---l~i~~GqT---vALVG~S 1025 (1228)
T KOG0055|consen 959 GSIFEILDRKPTID-----PDSTSGGKLPNVKGDIE--FRNVSFAYPTRPDVPVLNNLS---LSIRAGQT---VALVGPS 1025 (1228)
T ss_pred HHHHHHhcCCCCCC-----CCCCCCCccccceeEEE--EeeeEeeCCCCCCchhhcCCc---EEecCCCE---EEEECCC
Confidence 56665522221 11 01112333456778899 9999999985 568999999 99999999 9999999
Q ss_pred CCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhh
Q psy13234 940 GAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADI 1019 (1192)
Q Consensus 940 GSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~l 1019 (1192)
||||||++.||.|||||++|.|.|||+||+++++++||++||.|+|||.||++||||||.||.+++|++||++||
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aa----- 1100 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAA----- 1100 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999996669999999999
Q ss_pred hhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEe
Q psy13234 1020 HERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLD 1099 (1192)
Q Consensus 1020 h~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLD 1099 (1192)
+.|++|+||.+||+||||.|||+|.+||||||||||||||++|||+|||||
T Consensus 1101 -----------------------------k~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLD 1151 (1228)
T KOG0055|consen 1101 -----------------------------KLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLD 1151 (1228)
T ss_pred -----------------------------HHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeee
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1100 EATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1100 EATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
|||||||+++|+.||++|++++.|||+|+||||||||++||.|.|++||+|+|+|||+||++++|.|++|.+.|.
T Consensus 1152 EATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1152 EATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred ccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999885
No 7
>KOG0055|consensus
Probab=100.00 E-value=2.3e-91 Score=866.97 Aligned_cols=575 Identities=28% Similarity=0.409 Sum_probs=478.5
Q ss_pred cccceeeeeechhHHHHHHHHHHHHHHhH----HHHHHHHHHHHHhhhccccccccccccCCCchhhhhhhhhccCCCCc
Q psy13234 524 NLLNYVLFQIIPTILDIVIAIVFFVSTFS----TWYGVIVFTTMALYLGKNTVGERGLKLSGGEKQRVAIALNSLVDKPL 599 (1192)
Q Consensus 524 ~vl~~~lF~~~~tivDili~ii~~i~af~----~~fglIl~~~~~lYi~~~~ig~~G~~lSGGqkqri~~al~s~~~~~l 599 (1192)
.+.++++||| ++..|.+++++++++++. .|++.++++.++-.+++.... +- . .+.
T Consensus 12 ~~~~~~lf~~-a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-----------~~-------~-~~~- 70 (1228)
T KOG0055|consen 12 TVSFFKLFRF-ADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-----------IA-------S-SEV- 70 (1228)
T ss_pred ccchHHheec-cchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-----------hh-------H-HHH-
Confidence 6889999999 999999999999999887 999999999999444111110 00 0 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHH
Q psy13234 600 VFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDS 679 (1192)
Q Consensus 600 ~~~~~~vli~l~~~ii~~~~~~~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~ 679 (1192)
..+.+.++.+ .++..+..++....|...+.+...++|++.++.+++++.+|||.+.+|++..++++|++.
T Consensus 71 ---~~~~l~~~~l-------g~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~ 140 (1228)
T KOG0055|consen 71 ---SKVALYFVYL-------GVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIEL 140 (1228)
T ss_pred ---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHH
Confidence 1111111111 112234456777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q psy13234 680 ISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLN 759 (1192)
Q Consensus 680 I~~ll~~~l~~il~~l~diviaiv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~G 759 (1192)
|++.+..-+..++..+.+.+.+++ +.+...|.++++.+...|+..+....+.+...+...+.+.+.+++.+.+.|++.+
T Consensus 141 I~d~~geKvg~~i~~~~~fi~g~i-i~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~ 219 (1228)
T KOG0055|consen 141 IQDAIGEKVGNFIQLLATFIAGFV-IGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISS 219 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998877777777666555443 4455699999999999999888888888888888888888888999999999999
Q ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy13234 760 FETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYIL 839 (1192)
Q Consensus 760 i~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ 839 (1192)
++||.+|+.|+.+.+||.+.++...+...+......+.......++.+....++|+|..+ +..+..++|+++..+.++.
T Consensus 220 iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~l-i~~~~~~~g~v~~v~~~vl 298 (1228)
T KOG0055|consen 220 IRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTL-ILNGGYNGGDVITVFFSVL 298 (1228)
T ss_pred hhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCceEEEEEeehh
Confidence 999999999999999999999999999999888888877777677777777788888777 6677788888753333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccccccc-ccccccccccccccccccccccccccccccceeeecCC--CCcccc
Q psy13234 840 QLYVPLNWFDALTRYLEASLVPLPKKTNAKECR-TISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKG--KGTRDA 916 (1192)
Q Consensus 840 ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~~-~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~--~~vL~~ 916 (1192)
.-...+.+.......+..+..+..++++..+.. ... . ...+........+.++ |+||+|+||.+ .++++|
T Consensus 299 ~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~----~-~~~~~~~~~~~~g~ie--f~nV~FsYPsRpdv~Il~g 371 (1228)
T KOG0055|consen 299 IGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSID----P-YSKGGRVLSSIKGEIE--FRNVCFSYPSRPDVKILKG 371 (1228)
T ss_pred hhhhhhhccccchHHHhccccchHHHHHHhcCCCCCC----c-ccccCCcccccccceE--EEEEEecCCCCCcchhhCC
Confidence 222223333223334455555555665552211 000 0 0111223344568888 99999999864 489999
Q ss_pred ccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHH
Q psy13234 917 IGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996 (1192)
Q Consensus 917 ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIre 996 (1192)
+| +.+++|++ +|+||||||||||+++||.|||||++|+|+|||.|+++++.++||++||+|.|||+||++||+|
T Consensus 372 ~s---l~i~~G~~---valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~e 445 (1228)
T KOG0055|consen 372 VS---LKIPSGQT---VALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRE 445 (1228)
T ss_pred eE---EEeCCCCE---EEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHH
Confidence 99 99999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCC
Q psy13234 997 NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLS 1076 (1192)
Q Consensus 997 NI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LS 1076 (1192)
||+||+||||++|+++|| |+|++||||.++|+||||.|||+|.+||
T Consensus 446 NI~~G~~dat~~~i~~a~----------------------------------k~ana~~fi~~lp~g~~T~vge~g~qLS 491 (1228)
T KOG0055|consen 446 NIRYGKPDATREEIEEAA----------------------------------KAANAHDFILKLPDGYDTLVGERGVQLS 491 (1228)
T ss_pred HHhcCCCcccHHHHHHHH----------------------------------HHccHHHHHHhhHHhhcccccCCCCCCC
Confidence 999999999999999999 9999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCH
Q psy13234 1077 GGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRH 1156 (1192)
Q Consensus 1077 GGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~Gth 1156 (1192)
|||||||||||||+|||+||+|||||||||+++|+.||++|+++++|||+|+||||||||++||+|+||++|+|+|.|+|
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHhhccCC
Q psy13234 1157 EELLERNGVYASMWIQQNTKQS 1178 (1192)
Q Consensus 1157 eELL~~~G~Ya~L~~~Q~~~~~ 1178 (1192)
+||++.+|.|++|++.|..+.+
T Consensus 572 ~ELi~~~G~Y~~lv~~Q~~~~~ 593 (1228)
T KOG0055|consen 572 DELIALGGIYSSLVRLQELEKA 593 (1228)
T ss_pred HHHHhccchHHHHHHHHhhhhh
Confidence 9999999999999999976554
No 8
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.2e-88 Score=823.11 Aligned_cols=501 Identities=36% Similarity=0.539 Sum_probs=440.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 624 GVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIV 703 (1192)
Q Consensus 624 ~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv 703 (1192)
.++.+....+....+++...++|.++|++++++|+++|++.++|++++++++|++.++.........+...++. +++.+
T Consensus 66 ~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~-~~~~~ 144 (567)
T COG1132 66 GVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILL-LIGSL 144 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHH-HHHHH
Confidence 34445555566666788999999999999999999999999999999999999999999888763333323332 23334
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q psy13234 704 FFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTY 783 (1192)
Q Consensus 704 ~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~ 783 (1192)
.+++..+|.+++++++..|++.+....+.++..+..+..++..++..+.+.|+++|+++||+|+.++.+.+++++..++.
T Consensus 145 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~ 224 (567)
T COG1132 145 VLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEEL 224 (567)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45566788899999988888777777777666777788888889999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy13234 784 QVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLP 863 (1192)
Q Consensus 784 ~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~e 863 (1192)
.+...+..............+..++..+..+++++. +..+.+++|+++++..+..++..|+..++.....++.+..+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 303 (567)
T COG1132 225 RRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFL-VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAE 303 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777777777777777777777777777 7788899999999999999999999999999999998888888
Q ss_pred cccccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcH
Q psy13234 864 KKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGK 943 (1192)
Q Consensus 864 rl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGK 943 (1192)
|+.+..+.++. +.+.+.. .....++++ |+||+|+|++++++++++| +++++|++ +||||||||||
T Consensus 304 ri~~~l~~~~~-----~~~~~~~--~~~~~~~I~--f~~vsf~y~~~~~vl~~is---~~i~~Ge~---vaiVG~sGsGK 368 (567)
T COG1132 304 RLFELLDEEPE-----VEDPPDP--LKDTIGSIE--FENVSFSYPGKKPVLKDIS---FSIEPGEK---VAIVGPSGSGK 368 (567)
T ss_pred HHHHHHcCCcc-----ccCCCCC--CCCCCCeEE--EEEEEEEcCCCCccccCce---EEEcCCCE---EEEECCCCCCH
Confidence 88877332210 1111111 122335688 9999999998889999999 99999999 99999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhh
Q psy13234 944 STIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERI 1023 (1192)
Q Consensus 944 STLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i 1023 (1192)
||++++|+|+|||++|+|+|||+||++++.+++|++|++|||||+||+|||+|||+||+|++||||+++||
T Consensus 369 STl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~--------- 439 (567)
T COG1132 369 STLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEAL--------- 439 (567)
T ss_pred HHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCC
Q psy13234 1024 LSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103 (1192)
Q Consensus 1024 ~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATS 1103 (1192)
+.|++||+|+++|+||||+|||+|.+||||||||||||||++|||||||||||||
T Consensus 440 -------------------------k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 440 -------------------------KLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred -------------------------HHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhc
Q psy13234 1104 ALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175 (1192)
Q Consensus 1104 ALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~ 1175 (1192)
|||++||+.|++++++..++||+|+||||++|+++||+|+|||+|+|+|+|+|+||++++|.|++||+.|..
T Consensus 495 alD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~~ 566 (567)
T COG1132 495 ALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGG 566 (567)
T ss_pred ccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhhc
Confidence 999999999999999888999999999999999999999999999999999999999999999999998863
No 9
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-86 Score=875.99 Aligned_cols=499 Identities=22% Similarity=0.301 Sum_probs=395.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 628 NVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVS 707 (1192)
Q Consensus 628 ~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~ 707 (1192)
.++..++...+.+..+++|.++|++++++|++||+++++|++++|+++|++.++..++..+..++..++.++.+++++.+
T Consensus 971 ~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~ 1050 (1622)
T PLN03130 971 LLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGI 1050 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666778889999999999999999999999999999999999999999999998888888888776666554433
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q psy13234 708 TFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAE 787 (1192)
Q Consensus 708 ~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~ 787 (1192)
.+++..++++..++++.+...++.+..++.++......++..+++.|+++|++|||+||+++++.+++.+..+...+..
T Consensus 1051 -~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1129 (1622)
T PLN03130 1051 -VSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFT 1129 (1622)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 3444333322222222222223333334444555566788899999999999999999999988888888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13234 788 YQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTL-----TVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPL 862 (1192)
Q Consensus 788 ~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~i-----TvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~ 862 (1192)
+.......|+....+++..+.++++. .+.+...+.. ..+.+..+++|...+..+++.+.+....+++++.+.
T Consensus 1130 ~~~~~~~~wl~~~l~~~~~~~i~~~~---~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sv 1206 (1622)
T PLN03130 1130 LVNMSSNRWLAIRLETLGGLMIWLTA---SFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAV 1206 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555544433222222 2221222211 135555666778888888888888888888888888
Q ss_pred ccccccccccccccccccccccccccccccccccccccccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCC
Q psy13234 863 PKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGA 941 (1192)
Q Consensus 863 erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGS 941 (1192)
+|+.+..+.+.... . ..+...+....+.++.++ |+||+|+|+++ +++|+|+| +++++|++ +||||||||
T Consensus 1207 eRi~e~~~~~~E~~-~-~~~~~~~~~~wp~~g~I~--f~nVsf~Y~~~~~~VL~~is---~~I~~Gek---VaIVGrSGS 1276 (1622)
T PLN03130 1207 ERVGTYIDLPSEAP-L-VIENNRPPPGWPSSGSIK--FEDVVLRYRPELPPVLHGLS---FEISPSEK---VGIVGRTGA 1276 (1622)
T ss_pred HHHHHHhCCCCccc-c-cccCCCCCCCCCCCCcEE--EEEEEEEeCCCCCceeccee---EEEcCCCE---EEEECCCCC
Confidence 88877632211000 0 000000000001236788 99999999764 57999999 99999999 999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhh
Q psy13234 942 GKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHE 1021 (1192)
Q Consensus 942 GKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~ 1021 (1192)
|||||+++|+|+|+|++|+|+|||+||++++.+++|++|++|||||+||+|||||||++++ +++|||+++|+
T Consensus 1277 GKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al------- 1348 (1622)
T PLN03130 1277 GKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESL------- 1348 (1622)
T ss_pred CHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999875 34555555555
Q ss_pred hhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q psy13234 1022 RILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101 (1192)
Q Consensus 1022 ~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEA 1101 (1192)
+.|+++|+|.++|+||||+|||+|.+||||||||||||||++|+|+|||||||
T Consensus 1349 ---------------------------~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEA 1401 (1622)
T PLN03130 1349 ---------------------------ERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEA 1401 (1622)
T ss_pred ---------------------------HHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHHHHHhhc
Q psy13234 1102 TSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER-NGVYASMWIQQNT 1175 (1192)
Q Consensus 1102 TSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L~~~Q~~ 1175 (1192)
|||||++||+.||++|++.+++||+|+||||++|+.+||||+||++|+|+|+|+|+||+++ +|.|++|++.+..
T Consensus 1402 TSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1402 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcCh
Confidence 9999999999999999999999999999999999999999999999999999999999987 6999999986653
No 10
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.2e-87 Score=810.98 Aligned_cols=501 Identities=22% Similarity=0.298 Sum_probs=422.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviai 702 (1192)
..++.+.+.++....++++..++|.++|+|++++|+++|+++++|++++++++|++.+++.....+..++..++..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~- 154 (588)
T PRK11174 76 RALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLI- 154 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4566778888888999999999999999999999999999999999999999999999998876666666555543333
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q psy13234 703 VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQT 782 (1192)
Q Consensus 703 v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~ 782 (1192)
+++++.++|++++++++++|+.++....+.++..+..++..+..++..+.+.|+++|+++||+||+|+++.++|++..++
T Consensus 155 ~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~ 234 (588)
T PRK11174 155 LIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASED 234 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHH
Confidence 34556789999999888888877777777777767677777788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q psy13234 783 YQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDY---------TLFVSYILQLYVPLNWFDALTR 853 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~l---------vl~lsyi~ql~~PL~~l~~~~~ 853 (1192)
+.+...+..........+..++..++.++..+++++. . .|.+|+|++ +++..+..++..|+..++....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~ 312 (588)
T PRK11174 235 FRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFS-Y-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYH 312 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8888777666555555555544444433333333333 2 366777754 2222556688899999999888
Q ss_pred HHHHhcCCCcccccccccccccccccccccccccccc-ccccccccccccceeeecCCCCccccccccceeecCCcccce
Q psy13234 854 YLEASLVPLPKKTNAKECRTISCICHLTKAVTRIVLK-RIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWY 932 (1192)
Q Consensus 854 ~l~~a~~~~erl~~~~~~~~~~~~~~v~~~~~~i~l~-~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~ 932 (1192)
.++++..+.+|+.+..+.++. .+..+....+ ...++++ ++||+|.|++++++++++| +++++|++
T Consensus 313 ~~~~~~~~~~ri~~~l~~~~~------~~~~~~~~~~~~~~~~i~--~~~vsf~~~~~~~vL~~i~---l~i~~G~~--- 378 (588)
T PRK11174 313 AKAQAVGAAESLVTFLETPLA------HPQQGEKELASNDPVTIE--AEDLEILSPDGKTLAGPLN---FTLPAGQR--- 378 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCc------ccCCCccccCCCCCceEE--EEeeEEeccCCCeeeeeeE---EEEcCCCE---
Confidence 888888888887776322110 0000011111 1124577 9999988776678999999 99999999
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHH
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKE 1012 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~e 1012 (1192)
+|||||||||||||+++|+|+| |++|+|++||+|+++++.+++|++|+||||||+||+|||||||+||+|+++|||+.+
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~ 457 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQ 457 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999888888888
Q ss_pred HhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCC
Q psy13234 1013 AATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKA 1092 (1192)
Q Consensus 1013 Aa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrd 1092 (1192)
|| +.|++||+|.++|+||||.|||+|.+||||||||||||||+++|
T Consensus 458 al----------------------------------~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 458 AL----------------------------------ENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred HH----------------------------------HHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 88 99999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHH
Q psy13234 1093 PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQ 1172 (1192)
Q Consensus 1093 P~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~ 1172 (1192)
|+||||||||||||++||+.|+++|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++|.|+++|+.
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~ 583 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhc
Q psy13234 1173 QNT 1175 (1192)
Q Consensus 1173 Q~~ 1175 (1192)
|..
T Consensus 584 q~~ 586 (588)
T PRK11174 584 RQE 586 (588)
T ss_pred hhc
Confidence 764
No 11
>KOG0054|consensus
Probab=100.00 E-value=7.5e-88 Score=852.59 Aligned_cols=498 Identities=25% Similarity=0.416 Sum_probs=440.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 626 LNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFF 705 (1192)
Q Consensus 626 l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~l 705 (1192)
+..+|+.++...+.+..+.+|.++++++++.|++||+++++|+++||+++|++.+|..++..+..++..++.++..++ +
T Consensus 874 ~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~-v 952 (1381)
T KOG0054|consen 874 LTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV-V 952 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH-H
Confidence 344688888889999999999999999999999999999999999999999999999999999988888887655544 4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHH
Q psy13234 706 VSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQV 785 (1192)
Q Consensus 706 l~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~ 785 (1192)
+....|++.++++...++|.....++.+..++.+|.....+++..+++.|++.|+.|||||+.|+++.+++.+.+|...+
T Consensus 953 i~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~ 1032 (1381)
T KOG0054|consen 953 ISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSR 1032 (1381)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHH
Confidence 45567777777777777777777777777778888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy13234 786 AEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKK 865 (1192)
Q Consensus 786 ~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl 865 (1192)
+.+.....+.|+....+++.++.++++.++.+.. .++..++|.+.+.++|..++.+-++++.+....+++.++++||+
T Consensus 1033 ~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~--~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv 1110 (1381)
T KOG0054|consen 1033 AFFLSISANRWLAVRLELLGNLVVLIAALFAVLL--PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERV 1110 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 9999999999999999988777665555544332 22227799999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccccccc--cccccccccccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCc
Q psy13234 866 TNAKECRTISCICHLTKAVTRIVLKR--IENKIEENMEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAG 942 (1192)
Q Consensus 866 ~~~~~~~~~~~~~~v~~~~~~i~l~~--~~g~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSG 942 (1192)
.+..+.+.+ .+... .... +.+. .+|+|+ |+|++.+|.++ +++|+||| ++++|||+ |||||+||||
T Consensus 1111 ~eY~~~~~E-~p~~~--~~~~-pp~~WP~~G~I~--f~~~~~RYrp~lp~VLk~is---~~I~p~eK---VGIVGRTGaG 1178 (1381)
T KOG0054|consen 1111 LEYTDIPSE-APLEI--EESR-PPPSWPSKGEIE--FEDLSLRYRPNLPLVLKGIS---FTIKPGEK---VGIVGRTGAG 1178 (1381)
T ss_pred HHHhcCCCC-CCCCC--cCCC-CCCCCCCCCeEE--EEEeEEEeCCCCcchhcCce---EEEcCCce---EEEeCCCCCC
Confidence 988442211 11111 1111 1222 247888 99999999875 78999999 99999999 9999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhh
Q psy13234 943 KSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHER 1022 (1192)
Q Consensus 943 KSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~ 1022 (1192)
||||+++|+|+.+|.+|+|.|||+||+++++++||++++++||||+||+||+|+||
T Consensus 1179 KSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NL------------------------ 1234 (1381)
T KOG0054|consen 1179 KSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL------------------------ 1234 (1381)
T ss_pred HHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccccc------------------------
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy13234 1023 ILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEAT 1102 (1192)
Q Consensus 1023 i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEAT 1102 (1192)
||++ +++|+++|+||++|++.+.|.++|+|+|++|.|+|.|+|.||||.+||||||||+++||+|||||
T Consensus 1235 -----DPf~------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1235 -----DPFD------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred -----Cccc------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 3444 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHHHHHh
Q psy13234 1103 SALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER-NGVYASMWIQQ 1173 (1192)
Q Consensus 1103 SALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L~~~Q 1173 (1192)
||+|++|+..||++|++.+++||+|.||||++|+.++|||+|||+|+|+|+|+|++|+++ ++.|+++....
T Consensus 1304 AsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1304 ASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEA 1375 (1381)
T ss_pred ccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999976 67777676543
No 12
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2e-84 Score=802.40 Aligned_cols=495 Identities=24% Similarity=0.356 Sum_probs=431.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 622 GMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 701 (1192)
Q Consensus 622 ~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~divia 701 (1192)
...++.++++.+...+++++..++|.++|+|++++|+++|+++++|+++++++ |.+.+++++... .+..+.+.+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~---~~~~~~~~~~~ 263 (686)
T TIGR03797 188 GAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGS---TLTTLLSGIFA 263 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999997 677777766543 33444444433
Q ss_pred H--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHH
Q psy13234 702 I--VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKA 779 (1192)
Q Consensus 702 i--v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~ 779 (1192)
+ +++++.++|++++++++++++++++..++.++..+..++..+..++..+.+.|+++|+++||++|.|+++.++|++.
T Consensus 264 ~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 343 (686)
T TIGR03797 264 LLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKL 343 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHH
Confidence 3 23456678999999888888877777777777777777777888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13234 780 IQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASL 859 (1192)
Q Consensus 780 ~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~ 859 (1192)
.+++.+...+......+...+..++..+..++.++++++. +.+|++|+|+++++.++..++..|+..+......++++.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l-v~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~ 422 (686)
T TIGR03797 344 FSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISL-LGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVI 422 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888887777777777766666666666777777 788999999999999999999999999999999998888
Q ss_pred CCCccccccccccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcC
Q psy13234 860 VPLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQ 938 (1192)
Q Consensus 860 ~~~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~ 938 (1192)
...+|+.+..+.+.. .. .+.....+.+++++ ++||+|+|++ ++++++++| +++++|++ +||||+
T Consensus 423 ~~~~ri~~~l~~~~e-----~~--~~~~~~~~~~~~I~--~~nvsf~Y~~~~~~vL~~is---l~i~~Ge~---vaIvG~ 487 (686)
T TIGR03797 423 PLWERAKPILEALPE-----VD--EAKTDPGKLSGAIE--VDRVTFRYRPDGPLILDDVS---LQIEPGEF---VAIVGP 487 (686)
T ss_pred HHHHHHHHHhcCCcc-----cc--cCcCCCCCCCceEE--EEEEEEEcCCCCccceeeeE---EEECCCCE---EEEECC
Confidence 888887766322110 00 00011112235677 9999999974 578999999 99999999 999999
Q ss_pred CCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhh
Q psy13234 939 SGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSAD 1018 (1192)
Q Consensus 939 SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~ 1018 (1192)
||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++||||||||+||+|||+|||++|+| ++|||+.+|+
T Consensus 488 sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al---- 562 (686)
T TIGR03797 488 SGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAA---- 562 (686)
T ss_pred CCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHH----
Confidence 99999999999999999999999999999999999999999999999999999999999999988 8888888887
Q ss_pred hhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEE
Q psy13234 1019 IHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLL 1098 (1192)
Q Consensus 1019 lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLL 1098 (1192)
+.|+++|+|.++|+||||+|||+|.+||||||||||||||+++||+||||
T Consensus 563 ------------------------------~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiL 612 (686)
T TIGR03797 563 ------------------------------RMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLF 612 (686)
T ss_pred ------------------------------HHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHh
Q psy13234 1099 DEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173 (1192)
Q Consensus 1099 DEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q 1173 (1192)
||||||||++||++|+++|++. ++|+|+||||++++++||+|+||++|+|+|.|+|+||++++|.|++||+.|
T Consensus 613 DEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 613 DEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred eCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 9999999999999999999986 689999999999999999999999999999999999999999999999876
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.2e-83 Score=798.28 Aligned_cols=493 Identities=26% Similarity=0.381 Sum_probs=423.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 626 LNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFF 705 (1192)
Q Consensus 626 l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~l 705 (1192)
+..++..++...++++..++|.++|+++.++|+++|++.++|++++++++|++.+++........++..++.++..+ .+
T Consensus 217 ~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~-~~ 295 (711)
T TIGR00958 217 SAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLL-GF 295 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34456666777888899999999999999999999999999999999999999999887766666666655444333 34
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHH
Q psy13234 706 VSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQV 785 (1192)
Q Consensus 706 l~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~ 785 (1192)
++.++|.+++++++.++++.++...+.++..+..++..+..++..+.+.|+++|+++||+||.|+++.++|++..++..+
T Consensus 296 l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~ 375 (711)
T TIGR00958 296 MLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQ 375 (711)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 56689999999888888877777777777777777777888889999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy13234 786 AEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKK 865 (1192)
Q Consensus 786 ~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl 865 (1192)
...+.............++..+..++.+.++++. +.+|++|+|+++++..|..++..|+..+...+..++++..+.+|+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~l-v~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri 454 (711)
T TIGR00958 376 LNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQL-VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKV 454 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665555555555555444555555667776 788999999999999999999999999999999998888888887
Q ss_pred cccccccccccccccccccccccccccccccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCCcH
Q psy13234 866 TNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGK 943 (1192)
Q Consensus 866 ~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGK 943 (1192)
.+..+.++. .. ..+.....+.++.++ ++||+|+|+. ++++++|+| +++++|++ +||||||||||
T Consensus 455 ~~~l~~~~~-----~~-~~~~~~~~~~~~~I~--~~nVsf~Y~~~~~~~vL~~is---l~i~~Ge~---vaIvG~SGsGK 520 (711)
T TIGR00958 455 FEYLDRKPN-----IP-LTGTLAPLNLEGLIE--FQDVSFSYPNRPDVPVLKGLT---FTLHPGEV---VALVGPSGSGK 520 (711)
T ss_pred HHHhCCCCC-----CC-CCCCCCCCCCCCeEE--EEEEEEECCCCCCCccccCce---EEEcCCCE---EEEECCCCCCH
Confidence 776322210 00 001111112235677 9999999985 467999999 99999999 99999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhh
Q psy13234 944 STIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERI 1023 (1192)
Q Consensus 944 STLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i 1023 (1192)
|||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||+||+++++|||+.+|+
T Consensus 521 STLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al--------- 591 (711)
T TIGR00958 521 STVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAA--------- 591 (711)
T ss_pred HHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999998888888887777
Q ss_pred ccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCC
Q psy13234 1024 LSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103 (1192)
Q Consensus 1024 ~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATS 1103 (1192)
+.|+++++|.++|+||||.+||+|.+||||||||||||||++|||+|+|||||||
T Consensus 592 -------------------------~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTS 646 (711)
T TIGR00958 592 -------------------------KAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATS 646 (711)
T ss_pred -------------------------HHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcccc
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1104 ALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1104 ALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
|||++||+.|++ ....+++|+|+||||++++.+||+|+||++|+|+|+|+|+||++++|.|++|+
T Consensus 647 aLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 647 ALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred ccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhcC
Confidence 999999999999 33457899999999999999999999999999999999999999999999863
No 14
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4e-84 Score=802.36 Aligned_cols=497 Identities=27% Similarity=0.407 Sum_probs=429.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 622 GMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 701 (1192)
Q Consensus 622 ~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~divia 701 (1192)
...++.+++..+....++++..++|.++|+|++++|+++|+++++|++++|++ |.+.+.+++.... +..+.+++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~---~~~~~~~~~~ 283 (708)
T TIGR01193 208 IQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTI---LSLFLDMWIL 283 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999998 7777777655433 3334443333
Q ss_pred HH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHH
Q psy13234 702 IV--FFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKA 779 (1192)
Q Consensus 702 iv--~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~ 779 (1192)
++ .+++.++|++++++++.+++++++..++.++..+..++..+..++..+.+.|+++|+++||+||.|+.+.++|++.
T Consensus 284 ~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 363 (708)
T TIGR01193 284 VIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSE 363 (708)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHH
Confidence 22 2355678999999999999888888888777777777888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13234 780 IQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASL 859 (1192)
Q Consensus 780 ~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~ 859 (1192)
.+++.+...+..........+..++..+..++.++++++. +.+|++|+|+++++.++..++..|+..+......++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~l-v~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~ 442 (708)
T TIGR01193 364 FGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYL-VMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAAR 442 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888877776666665555555555555666677777 789999999999999999999999999999998888888
Q ss_pred CCCccccccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCC
Q psy13234 860 VPLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQS 939 (1192)
Q Consensus 860 ~~~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~S 939 (1192)
.+.+|+.+..+.+.. ..+.......+...++++ ++|++|+|+.++++++++| +++++|++ +||||||
T Consensus 443 ~~~~ri~~~l~~~~e-----~~~~~~~~~~~~~~~~I~--~~~vsf~y~~~~~iL~~is---l~i~~G~~---vaIvG~S 509 (708)
T TIGR01193 443 VANNRLNEVYLVDSE-----FINKKKRTELNNLNGDIV--INDVSYSYGYGSNILSDIS---LTIKMNSK---TTIVGMS 509 (708)
T ss_pred HHHHHHHHHHcCCCc-----ccccccccCCCCCCCcEE--EEEEEEEcCCCCcceecee---EEECCCCE---EEEECCC
Confidence 888887776322100 000000011122335677 9999999987778999999 99999999 9999999
Q ss_pred CCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhcc-ccCCCHHHHHHHhhhhh
Q psy13234 940 GAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYA-RINASEEEVKEAATSAD 1018 (1192)
Q Consensus 940 GSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G-~~~asdEeV~eAa~~a~ 1018 (1192)
|||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||||||+||+|||||||++| +|+++|||+.+||
T Consensus 510 GsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~---- 585 (708)
T TIGR01193 510 GSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAAC---- 585 (708)
T ss_pred CCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHH----
Confidence 99999999999999999999999999999999999999999999999999999999999999 5788888888887
Q ss_pred hhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEE
Q psy13234 1019 IHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLL 1098 (1192)
Q Consensus 1019 lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLL 1098 (1192)
+.|+++|+|.++|+||||+|||+|.+||||||||||||||++++|+||||
T Consensus 586 ------------------------------~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliL 635 (708)
T TIGR01193 586 ------------------------------EIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLIL 635 (708)
T ss_pred ------------------------------HHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1099 DEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1099 DEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
||||||||++||+.|+++|++. +++|+|+||||+++++.||+|++|++|+++|.|+|+||++++|.|++||+
T Consensus 636 DE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 636 DESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred eCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 9999999999999999999985 78999999999999999999999999999999999999999999999985
No 15
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.8e-83 Score=793.73 Aligned_cols=500 Identities=27% Similarity=0.376 Sum_probs=429.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 622 GMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 701 (1192)
Q Consensus 622 ~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~divia 701 (1192)
...++.++|..+...++.++..+++.++|+|++++|+++|+++++|+++++++.| +.+.+++.. .+.+.+.+++..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~---~~~~~~~~~~~~ 281 (710)
T TIGR03796 206 LQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSG---QLATTALDAVML 281 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHH---HHHHHHHHHHHH
Confidence 3456778899999999999999999999999999999999999999999999887 567766553 334444444433
Q ss_pred HH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHH
Q psy13234 702 IV--FFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKA 779 (1192)
Q Consensus 702 iv--~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~ 779 (1192)
++ ++++.++|++++++++.+++++++..++.++..+..++..+..++..+.+.|+++|+++||++|.|+.+.++|++.
T Consensus 282 ~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~ 361 (710)
T TIGR03796 282 VFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGY 361 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHH
Confidence 33 3456688999999999888888777777777777777777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13234 780 IQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASL 859 (1192)
Q Consensus 780 ~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~ 859 (1192)
.+++.+...+......+...+...+..++.++.++++++. +.+|++|+|+++++.++..++..|+..+......++++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~-v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~ 440 (710)
T TIGR03796 362 QAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLR-VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELE 440 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888777777777777777666666777778887 788999999999999999999999999998888888888
Q ss_pred CCCccccccccccccccccccccccccccc-cccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEc
Q psy13234 860 VPLPKKTNAKECRTISCICHLTKAVTRIVL-KRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVG 937 (1192)
Q Consensus 860 ~~~erl~~~~~~~~~~~~~~v~~~~~~i~l-~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG 937 (1192)
.+.+|+.+..+.++................ +..++.++ ++|++|+|++ ++++++++| +++++|++ +||||
T Consensus 441 ~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~--~~~vsf~y~~~~~~vL~~is---l~i~~Ge~---vaIvG 512 (710)
T TIGR03796 441 GDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE--LRNITFGYSPLEPPLIENFS---LTLQPGQR---VALVG 512 (710)
T ss_pred HHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE--EEEEEEecCCCCCCccccee---EEEcCCCE---EEEEC
Confidence 888887766322110000000000000001 12235677 9999999986 478999999 99999999 99999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhh
Q psy13234 938 QSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSA 1017 (1192)
Q Consensus 938 ~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a 1017 (1192)
|||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||||||+||+|||||||++++|+++||++.+|+
T Consensus 513 ~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al--- 589 (710)
T TIGR03796 513 GSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRAC--- 589 (710)
T ss_pred CCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888877
Q ss_pred hhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q psy13234 1018 DIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVL 1097 (1192)
Q Consensus 1018 ~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILL 1097 (1192)
+.++++|+|.++|+||||+|||+|.+||||||||||||||++++|+|+|
T Consensus 590 -------------------------------~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ili 638 (710)
T TIGR03796 590 -------------------------------KDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILI 638 (710)
T ss_pred -------------------------------HHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1098 LDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1098 LDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
|||||||||++||+.|.+.|++ .++|+|+||||++++++||+|+||++|+|+|.|+|+||++++|.|++||
T Consensus 639 LDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 639 LDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred EECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 9999999999999999999987 5899999999999999999999999999999999999999999999998
No 16
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7.7e-83 Score=773.94 Aligned_cols=500 Identities=30% Similarity=0.431 Sum_probs=432.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 624 GVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIV 703 (1192)
Q Consensus 624 ~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv 703 (1192)
.++.+++.++...+++++..++|.++|+++.+.|.++|+++++|++++++++|++.+.+........++..++.+++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (582)
T PRK11176 79 GITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFI 158 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888999999999999999999999999999999999999999999988776665555555554444443
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q psy13234 704 FFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTY 783 (1192)
Q Consensus 704 ~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~ 783 (1192)
+++.++|++++++++.++++.++.....++..+..++..+..++..+.+.|.++|+++||+||.|+.+.++|++..+++
T Consensus 159 -~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~ 237 (582)
T PRK11176 159 -MMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRM 237 (582)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 3455788888888888887777666776666666677777888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy13234 784 QVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLP 863 (1192)
Q Consensus 784 ~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~e 863 (1192)
.+...+......+...+..++..++..+..+++++. +.+|++|+|+++++.++..++..|++.+......++++..+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ 316 (582)
T PRK11176 238 RQQGMKMVSASSISDPIIQLIASLALAFVLYAASFP-SVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQ 316 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888887777777777777666666666677776 7778999999999999999999999999988888888877777
Q ss_pred cccccccccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCc
Q psy13234 864 KKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAG 942 (1192)
Q Consensus 864 rl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSG 942 (1192)
|+.+..+.++. . ..+....++..++++ ++|++|+|++ ++++++++| +++++|++ +||||+||||
T Consensus 317 ri~~~~~~~~~-----~--~~~~~~~~~~~~~i~--~~~vsf~y~~~~~~il~~i~---l~i~~G~~---~aIvG~sGsG 381 (582)
T PRK11176 317 TLFAILDLEQE-----K--DEGKRVIERAKGDIE--FRNVTFTYPGKEVPALRNIN---FKIPAGKT---VALVGRSGSG 381 (582)
T ss_pred HHHHHhcCCCc-----C--CCCCcCCCCCCCeEE--EEEEEEecCCCCCccccCce---EEeCCCCE---EEEECCCCCC
Confidence 77665321100 0 001111112234577 9999999986 478999999 99999999 9999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccC-CCHHHHHHHhhhhhhhh
Q psy13234 943 KSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARIN-ASEEEVKEAATSADIHE 1021 (1192)
Q Consensus 943 KSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~-asdEeV~eAa~~a~lh~ 1021 (1192)
||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||+|||++|+++ ++|||+.+|+
T Consensus 382 KSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al------- 454 (582)
T PRK11176 382 KSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAA------- 454 (582)
T ss_pred HHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHH-------
Confidence 99999999999999999999999999999999999999999999999999999999999764 5666666666
Q ss_pred hhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q psy13234 1022 RILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101 (1192)
Q Consensus 1022 ~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEA 1101 (1192)
+.+++++++.++|+||||++||+|.+|||||||||+||||++++|+|+|||||
T Consensus 455 ---------------------------~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEp 507 (582)
T PRK11176 455 ---------------------------RMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507 (582)
T ss_pred ---------------------------HHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1102 TSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1102 TSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
|||||++||+.+.++|.+..+++|+|+||||++++++||+|++|++|+|+|.|+|+||+++++.|++||..|.
T Consensus 508 tsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 508 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHHh
Confidence 9999999999999999999889999999999999999999999999999999999999999999999998764
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.8e-82 Score=767.62 Aligned_cols=502 Identities=25% Similarity=0.362 Sum_probs=420.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviai 702 (1192)
..++.+.+..+...++.+...++|.++|+++++.|+++|++.++|++++++++|++.+++........++..+..+++ .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~-~ 156 (592)
T PRK10790 78 AAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGA-M 156 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 355677888888999999999999999999999999999999999999999999999998877666655555543322 2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q psy13234 703 VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQT 782 (1192)
Q Consensus 703 v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~ 782 (1192)
+.+++.++|++++++++++|+.++......++..+..++..+..++..+.+.|.+.|+++||+||.|+++.++|.+..++
T Consensus 157 ~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~ 236 (592)
T PRK10790 157 LVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRS 236 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHH
Confidence 33445678888888877777765555555555555566666777788889999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13234 783 YQVAEYQNSLSLVFL-NSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVP 861 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l-~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~ 861 (1192)
..+...+......+. ..+..++.....++..+++++ +..|.+++|.++++..|..++..|+..+......++++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s 314 (592)
T PRK10790 237 HYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF--SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVA 314 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666555444332 223333322222222222222 46889999999999999999999999999999999888888
Q ss_pred CccccccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCC
Q psy13234 862 LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGA 941 (1192)
Q Consensus 862 ~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGS 941 (1192)
.+|+.+..+.++. .+..... +..+++++ ++|++|+|+.++++++++| +++++|++ +||||+|||
T Consensus 315 ~~ri~~~l~~~~~------~~~~~~~--~~~~~~i~--~~~v~f~y~~~~~il~~i~---l~i~~Ge~---iaIvG~SGs 378 (592)
T PRK10790 315 GERVFELMDGPRQ------QYGNDDR--PLQSGRID--IDNVSFAYRDDNLVLQNIN---LSVPSRGF---VALVGHTGS 378 (592)
T ss_pred HHHHHHHhcCCCc------cCCCCcc--CCCCCeEE--EEEEEEEeCCCCceeecee---EEEcCCCE---EEEECCCCC
Confidence 8887766322210 0000011 11224577 9999999987678999999 99999999 999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhh
Q psy13234 942 GKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHE 1021 (1192)
Q Consensus 942 GKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~ 1021 (1192)
|||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||+|||++|+ +++|||+.+|+
T Consensus 379 GKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~------- 450 (592)
T PRK10790 379 GKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQAL------- 450 (592)
T ss_pred CHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999997 67777777777
Q ss_pred hhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q psy13234 1022 RILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101 (1192)
Q Consensus 1022 ~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEA 1101 (1192)
+.++++++|.++|+||||.+||+|.+||||||||||||||+++||+|+|||||
T Consensus 451 ---------------------------~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEp 503 (592)
T PRK10790 451 ---------------------------ETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEA 503 (592)
T ss_pred ---------------------------HHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhccCC
Q psy13234 1102 TSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTKQS 1178 (1192)
Q Consensus 1102 TSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~~~~ 1178 (1192)
|||||++||+.|++.|++..++||+|+||||+++++.||+|++|++|+++|.|+|+||+++++.|++|++.|..+++
T Consensus 504 ts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~~~~ 580 (592)
T PRK10790 504 TANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLAGEE 580 (592)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhhhcc
Confidence 99999999999999999998899999999999999999999999999999999999999999999999998865443
No 18
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.1e-82 Score=781.97 Aligned_cols=490 Identities=24% Similarity=0.360 Sum_probs=425.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 622 GMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 701 (1192)
Q Consensus 622 ~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~divia 701 (1192)
...++.+++.++....++++..++|.++|+|++++|+++ +++++|++++|+ +|++.+++++.......+..++.+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~ 276 (694)
T TIGR03375 199 FDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLF 276 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999999998 789999999999 688888877664433333332222222
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHH
Q psy13234 702 IVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQ 781 (1192)
Q Consensus 702 iv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~ 781 (1192)
+.+++.++|++++++++.+++++++..++.++..+..++..+..++..+.+.|+++|+++||+||.|+.+.++|++..+
T Consensus 277 -~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 355 (694)
T TIGR03375 277 -LLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVA 355 (694)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHH
Confidence 2345567899999999999988888888888777777888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13234 782 TYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVP 861 (1192)
Q Consensus 782 ~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~ 861 (1192)
++.+...+..........+..++..++.++.++++++. +.+|++|+|+++++.++..++..|+..+......++.+..+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~-v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~ 434 (694)
T TIGR03375 356 ALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYL-ISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTA 434 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877777777777766666666666777777 78899999999999999999999999999998888888888
Q ss_pred CccccccccccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCC
Q psy13234 862 LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSG 940 (1192)
Q Consensus 862 ~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SG 940 (1192)
.+|+.+..+.++. ..+.......+...+.++ ++|++|+|++ ++++++++| +++++|++ +||||+||
T Consensus 435 ~~ri~~il~~~~e-----~~~~~~~~~~~~~~~~I~--~~~vsf~Y~~~~~~vL~~i~---l~i~~G~~---iaIvG~sG 501 (694)
T TIGR03375 435 LQSLDELMQLPVE-----RPEGTRFLHRPRLQGEIE--FRNVSFAYPGQETPALDNVS---LTIRPGEK---VAIIGRIG 501 (694)
T ss_pred HHHHHHHHcCCCC-----CCCCCCCCCCCCccceEE--EEEEEEEeCCCCccceeeee---EEECCCCE---EEEECCCC
Confidence 8887776322210 000000011112235677 9999999975 467999999 99999999 99999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhh
Q psy13234 941 AGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIH 1020 (1192)
Q Consensus 941 SGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh 1020 (1192)
||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||+||+|||+|||++++|++++||+.+|+
T Consensus 502 sGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~------ 575 (694)
T TIGR03375 502 SGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAA------ 575 (694)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred hhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q psy13234 1021 ERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE 1100 (1192)
Q Consensus 1021 ~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDE 1100 (1192)
+.++++|+|.++|+||||.+||+|.+||||||||||||||++++|+|+||||
T Consensus 576 ----------------------------~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE 627 (694)
T TIGR03375 576 ----------------------------ELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE 627 (694)
T ss_pred ----------------------------HHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1101 ATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1101 ATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
||||||++||+.|+++|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++
T Consensus 628 ~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 628 PTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 19
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-82 Score=739.29 Aligned_cols=506 Identities=25% Similarity=0.339 Sum_probs=443.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 622 GMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 701 (1192)
Q Consensus 622 ~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~divia 701 (1192)
.-.++...+..+-.+.++.....+|+++++|+.++++.+-.+.++|+..+.+..++++++.++..++++...+.+ ++..
T Consensus 52 lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~i-vp~~ 130 (559)
T COG4988 52 LRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAI-VPLL 130 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 345667778888888999999999999999999999999999999999999999999999998888877766554 3445
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHH
Q psy13234 702 IVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQ 781 (1192)
Q Consensus 702 iv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~ 781 (1192)
++..++.++|..++|+++++|+..++++.+....++..++.-.+...+++++.|.++|++|+|+||..++..++..+..+
T Consensus 131 i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se 210 (559)
T COG4988 131 ILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSE 210 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHH
Confidence 55566788999999999999999888888888777777777888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13234 782 TYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVP 861 (1192)
Q Consensus 782 ~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~ 861 (1192)
++++..++..+.......+.+++.++++..+.++.+..+...|.+|......++.....++.|+..+++.++.-.++...
T Consensus 211 ~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa 290 (559)
T COG4988 211 DFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAA 290 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 99999988887777777788888888877777776666333278998887888888889999999999999988777555
Q ss_pred CccccccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCC
Q psy13234 862 LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGA 941 (1192)
Q Consensus 862 ~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGS 941 (1192)
.+.+....+.+.. ..+........+ +..++...+|++|.|+.+++.+++++ +++++|+. +||||+|||
T Consensus 291 ~d~i~~~l~~~~~-----~~~~~~~~~~~~-~~~~ei~~~~l~~~y~~g~~~l~~l~---~t~~~g~~---talvG~SGa 358 (559)
T COG4988 291 ADKLFTLLESPVA-----TPGSGEKAEVAN-EPPIEISLENLSFRYPDGKPALSDLN---LTIKAGQL---TALVGASGA 358 (559)
T ss_pred HHHHHHHhcCCCC-----CCCCcccccccc-CCCceeeecceEEecCCCCcccCCce---eEecCCcE---EEEECCCCC
Confidence 5555555322210 001110001111 12333227799999999889999999 99999999 999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhh
Q psy13234 942 GKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHE 1021 (1192)
Q Consensus 942 GKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~ 1021 (1192)
|||||+++|+|+++|++|+|++||+|+++++.+++|+++++|||+|+||+|||||||++++|+++||||.+|+
T Consensus 359 GKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al------- 431 (559)
T COG4988 359 GKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAAL------- 431 (559)
T ss_pred CHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q psy13234 1022 RILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101 (1192)
Q Consensus 1022 ~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEA 1101 (1192)
+.+++.|++.+ |+|+||++||+|.+|||||+||+|+|||+++++++++||||
T Consensus 432 ---------------------------~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEp 483 (559)
T COG4988 432 ---------------------------DQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEP 483 (559)
T ss_pred ---------------------------HHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 99999999999 99999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhc
Q psy13234 1102 TSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175 (1192)
Q Consensus 1102 TSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~ 1175 (1192)
||+||.|||+.|+++|.++.+++|+|+||||++.+.+||+|+|||+|+++|.|+|+||.+++|.|++|+++|+.
T Consensus 484 TA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 484 TAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred ccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864
No 20
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-82 Score=832.37 Aligned_cols=501 Identities=26% Similarity=0.325 Sum_probs=411.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc--CChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLS--RKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVI 700 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~--~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~divi 700 (1192)
.+++.+++.++...+++++..++|.++|++++++|++||++ +++|++++++++|++.++..+...+..++..++.+++
T Consensus 879 ~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~ 958 (1466)
T PTZ00265 879 MFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLV 958 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888899999999999999999999999999986 8899999999999999998877666666666554444
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHHchHHH
Q psy13234 701 AIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKF-QRK-----------------MNLADNALNTRSIDSLLNFET 762 (1192)
Q Consensus 701 aiv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~-~r~-----------------~~~a~s~l~~~~~EsL~Gi~T 762 (1192)
+++ +++.++|.++++++++.++ +...+.++.+.. .++ .++...+....+.|++.|++|
T Consensus 959 ~~~-~~~~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~t 1034 (1466)
T PTZ00265 959 SMV-MSFYFCPIVAAVLTGTYFI---FMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNT 1034 (1466)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHH
Confidence 333 4456788777665543332 222222221111 111 112244567788999999999
Q ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Q psy13234 763 VKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLY 842 (1192)
Q Consensus 763 IKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~ 842 (1192)
||+|+.|+++.++|.+..++..+...+......+...+...+..++.++++++++++ +..|++|+|+++.++.++....
T Consensus 1035 Vka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l-v~~g~it~g~l~~~~~~~~~~~ 1113 (1466)
T PTZ00265 1035 VIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFL-IRRGTILVDDFMKSLFTFLFTG 1113 (1466)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988887777776666666666666666666667788887 8889999999988877766555
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccc-cc-cccccccccccccccceeeecC--CCCcccccc
Q psy13234 843 VPLNWFDALTRYLEASLVPLPKKTNAKECRTISCICHLTKAVT-RI-VLKRIENKIEENMEEDQFGFRK--GKGTRDAIG 918 (1192)
Q Consensus 843 ~PL~~l~~~~~~l~~a~~~~erl~~~~~~~~~~~~~~v~~~~~-~i-~l~~~~g~I~~~fenVsFsY~~--~~~vL~~IS 918 (1192)
.++..+......++++..+.+++.++.+.+... . ..+..+ .. ..+..++.++ |+||+|+|+. ++++++++|
T Consensus 1114 ~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~--~-~~~~~~~~~~~~~~~~g~I~--f~nVsF~Y~~~~~~~vL~~ls 1188 (1466)
T PTZ00265 1114 SYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNI--D-VRDNGGIRIKNKNDIKGKIE--IMDVNFRYISRPNVPIYKDLT 1188 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcC--C-CCCCcccccccCCCCCceEE--EEEEEEECCCCCCCccccCee
Confidence 677777777888888888888877663221000 0 001100 10 0112346688 9999999984 457999999
Q ss_pred ccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC------------------------------------------
Q psy13234 919 CLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV------------------------------------------ 956 (1192)
Q Consensus 919 vL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp------------------------------------------ 956 (1192)
+.+++|++ +|||||||||||||++||+|+|+|
T Consensus 1189 ---l~i~~G~~---vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 (1466)
T PTZ00265 1189 ---FSCDSKKT---TAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTK 1262 (1466)
T ss_pred ---EEEcCCCE---EEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999 999999999999999999999999
Q ss_pred ------------CCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhc
Q psy13234 957 ------------ESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERIL 1024 (1192)
Q Consensus 957 ------------~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~ 1024 (1192)
++|+|+|||+||++++.+++|++||||||||+||+|||||||+||+|+++||||++||
T Consensus 1263 ~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~---------- 1332 (1466)
T PTZ00265 1263 EGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRAC---------- 1332 (1466)
T ss_pred ccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHH----------
Confidence 6999999999999999999999999999999999999999999999999999998888
Q ss_pred cCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCC
Q psy13234 1025 SFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104 (1192)
Q Consensus 1025 ~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSA 1104 (1192)
+.|++||+|.+||+||||.|||+|.+|||||||||||||||+|||+||||||||||
T Consensus 1333 ------------------------k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSa 1388 (1466)
T PTZ00265 1333 ------------------------KFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSS 1388 (1466)
T ss_pred ------------------------HHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCceEEEEecChhHHHhcCEEEEEeC----CEE-EEEcCHHHHHh-cCcHHHHHHHHh
Q psy13234 1105 LDTKTERNIQSALNRVC--ASRTTIIVAHRLSTIIHADEILVMHA----GEI-VERGRHEELLE-RNGVYASMWIQQ 1173 (1192)
Q Consensus 1105 LD~eTE~~Iq~aL~~l~--~grTvIvIAHRLSTI~~aDrIlVLe~----G~I-vE~GtheELL~-~~G~Ya~L~~~Q 1173 (1192)
||++||+.|+++|.+.. ++||+|+||||++++++||+|+||++ |++ +|+|+|+||++ ++|.|++||+.|
T Consensus 1389 LD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1389 LDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred cCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 99999999999999984 68999999999999999999999999 995 59999999998 599999999876
No 21
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.1e-82 Score=764.60 Aligned_cols=497 Identities=22% Similarity=0.305 Sum_probs=422.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 624 GVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIV 703 (1192)
Q Consensus 624 ~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv 703 (1192)
.++.++..++....+.+...++|.++|+|++++|+.+|++.++|++++++++|++.++++.......++..++..++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~- 152 (574)
T PRK11160 74 TAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLT- 152 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4556677777788899999999999999999999999999999999999999999999988776666666655544433
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q psy13234 704 FFVSTFSTWYGVIVFTTMALYLVT-SIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQT 782 (1192)
Q Consensus 704 ~ll~~~~~~lalIvl~~l~l~li~-~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~ 782 (1192)
++++.++|.+++++++++|++.++ ..++.++..+..++.+++.++..+.+.|+++|+++||+||.|+++.++|++..++
T Consensus 153 ~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~ 232 (574)
T PRK11160 153 IGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQ 232 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHH
Confidence 355678999998887777655443 3444455555566777888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC
Q psy13234 783 YQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQ-LYVPLNWFDALTRYLEASLVP 861 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~q-l~~PL~~l~~~~~~l~~a~~~ 861 (1192)
+.+...+......+...+..++..++.++.++++++. + +|.+++|.++++..|... ...|+..+......++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s 310 (574)
T PRK11160 233 WLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-V-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIAS 310 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888887777777776666666655566666665 4 678999999988887654 456777777777777777777
Q ss_pred CccccccccccccccccccccccccccccccccccccccccceeeecCC-CCccccccccceeecCCcccceEEEEcCCC
Q psy13234 862 LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSG 940 (1192)
Q Consensus 862 ~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SG 940 (1192)
.+|+.+..+.+.. ..+..+.. .....+.++ ++|++|+|+++ +++++++| +++++|++ +|||||||
T Consensus 311 ~~ri~~ll~~~~~-----~~~~~~~~-~~~~~~~i~--~~~v~f~y~~~~~~il~~i~---~~i~~G~~---~aivG~sG 376 (574)
T PRK11160 311 ARRINEITEQKPE-----VTFPTTST-AAADQVSLT--LNNVSFTYPDQPQPVLKGLS---LQIKAGEK---VALLGRTG 376 (574)
T ss_pred HHHHHHHHhCCCC-----CCCCcccC-CCCCCCeEE--EEEEEEECCCCCCcceecce---EEECCCCE---EEEECCCC
Confidence 7787766322110 00010000 011235677 99999999764 67999999 99999999 99999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhh
Q psy13234 941 AGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIH 1020 (1192)
Q Consensus 941 SGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh 1020 (1192)
||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||++||+|||++++|+++|||+.+|+
T Consensus 377 sGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al------ 450 (574)
T PRK11160 377 CGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVL------ 450 (574)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888877
Q ss_pred hhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q psy13234 1021 ERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE 1100 (1192)
Q Consensus 1021 ~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDE 1100 (1192)
+.++++++|.+ |+||||+|||+|.+||||||||||||||+++||+|+||||
T Consensus 451 ----------------------------~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE 501 (574)
T PRK11160 451 ----------------------------QQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE 501 (574)
T ss_pred ----------------------------HHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHH
Q psy13234 1101 ATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQ 1172 (1192)
Q Consensus 1101 ATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~ 1172 (1192)
|||+||++||+.|+++|++..+++|+|+||||++++.+||+|++|++|+++|.|+|+||++++|.|++||+.
T Consensus 502 ~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 502 PTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence 999999999999999999998899999999999999999999999999999999999999999999999963
No 22
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.8e-81 Score=773.35 Aligned_cols=499 Identities=29% Similarity=0.438 Sum_probs=435.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviai 702 (1192)
..++.+++.++...+++++..++|.++|+|++++|+.+|+++++|++++|+ +|++.+++++.. .+++.+.+.+..+
T Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~---~~~~~~~~~~~~~ 267 (694)
T TIGR01846 192 EPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTG---SALTVVLDLLFVV 267 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999 588888776543 3344444444332
Q ss_pred --HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHH
Q psy13234 703 --VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAI 780 (1192)
Q Consensus 703 --v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~ 780 (1192)
+.+++.++|++++++++++++++++..++.+..++..++..++.++..+.+.|+++|+++||++|.|+++.++|++..
T Consensus 268 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~ 347 (694)
T TIGR01846 268 VFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQL 347 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHH
Confidence 234567899999999988888888777777766666666677778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13234 781 QTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLV 860 (1192)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~ 860 (1192)
+++.+...+......+......++..++.++.++++++. +.+|++|+|+++++.++..++..|+..+......++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l-v~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~ 426 (694)
T TIGR01846 348 AAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHL-VIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGI 426 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888887777777777776666666667778887 7889999999999999999999999999999999988888
Q ss_pred CCccccccccccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCC
Q psy13234 861 PLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQS 939 (1192)
Q Consensus 861 ~~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~S 939 (1192)
+.+|+.+..+.+.. . +..+....++.+++++ ++|++|+|++ ++++++++| +.+++|++ +||||+|
T Consensus 427 ~~~ri~~~l~~~~e-----~-~~~~~~~~~~~~~~i~--~~~vsf~y~~~~~~il~~i~---l~i~~G~~---vaivG~s 492 (694)
T TIGR01846 427 ALERLGDILNSPTE-----P-RSAGLAALPELRGAIT--FENIRFRYAPDSPEVLSNLN---LDIKPGEF---IGIVGPS 492 (694)
T ss_pred HHHHHHHHHcCCCC-----c-cCCCCCCCCCCCCeEE--EEEEEEEcCCCCccccccce---EEECCCCE---EEEECCC
Confidence 88887776322210 0 0001111122335677 9999999975 467999999 99999999 9999999
Q ss_pred CCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhh
Q psy13234 940 GAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADI 1019 (1192)
Q Consensus 940 GSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~l 1019 (1192)
|||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|||++++|++++|++.+||
T Consensus 493 GsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~----- 567 (694)
T TIGR01846 493 GSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAA----- 567 (694)
T ss_pred CCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred hhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEe
Q psy13234 1020 HERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLD 1099 (1192)
Q Consensus 1020 h~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLD 1099 (1192)
+.++++|+|.++|+||||++||+|.+|||||||||+||||++++|+|+|||
T Consensus 568 -----------------------------~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililD 618 (694)
T TIGR01846 568 -----------------------------KLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFD 618 (694)
T ss_pred -----------------------------HHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1100 EATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1100 EATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
||||+||++||+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||++++|.|+++|+.|.
T Consensus 619 Epts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 619 EATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQS 693 (694)
T ss_pred CCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhhc
Confidence 999999999999999999999889999999999999999999999999999999999999999999999998764
No 23
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.5e-81 Score=829.00 Aligned_cols=494 Identities=23% Similarity=0.334 Sum_probs=414.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 628 NVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVS 707 (1192)
Q Consensus 628 ~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~ 707 (1192)
+++..++...+.+..+++|.++|+++++.|++||+++++|++++|+++|++.+++.+...+..++..++.++.+++++ +
T Consensus 1023 ~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~-~ 1101 (1522)
T TIGR00957 1023 FGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVI-L 1101 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344555667788899999999999999999999999999999999999999999999887777777766655554433 4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q psy13234 708 TFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAE 787 (1192)
Q Consensus 708 ~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~ 787 (1192)
..+|++++++++.++++.+...++.+..++.++......++..+++.|++.|++|||+||+|+++.+++.+..+..++..
T Consensus 1102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1181 (1522)
T TIGR00957 1102 LATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAY 1181 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45676666555555555554444444445555666677888999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q psy13234 788 YQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTN 867 (1192)
Q Consensus 788 ~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~ 867 (1192)
+.......|+....+++..+.. ++.+++.+...+.+++|.++++++|..++..|+..+...+..+++++.+.+|+.+
T Consensus 1182 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~ 1258 (1522)
T TIGR00957 1182 YPSIVANRWLAVRLECVGNCIV---LFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKE 1258 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877788888777666543322 2222333234678999999999999999999999999999999999999999887
Q ss_pred ccccccccccccccccccccccc--ccccccccccccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHH
Q psy13234 868 AKECRTISCICHLTKAVTRIVLK--RIENKIEENMEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKS 944 (1192)
Q Consensus 868 ~~~~~~~~~~~~v~~~~~~i~l~--~~~g~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKS 944 (1192)
..+.+... ..+.++..+.+ +.++.++ |+||+|+|+++ +++++|+| +++++|++ +|||||||||||
T Consensus 1259 ~~~~~~e~----~~~~~~~~~~~~wp~~g~I~--f~nVsf~Y~~~~~~vL~~is---~~I~~Gek---iaIVGrTGsGKS 1326 (1522)
T TIGR00957 1259 YSETEKEA----PWQIQETAPPSGWPPRGRVE--FRNYCLRYREDLDLVLRHIN---VTIHGGEK---VGIVGRTGAGKS 1326 (1522)
T ss_pred HhcCCCCc----cccccCCCCCCCCCCCCcEE--EEEEEEEeCCCCccccccee---EEEcCCCE---EEEECCCCCCHH
Confidence 74222100 00000001111 1236788 99999999864 57999999 99999999 999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhc
Q psy13234 945 TIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERIL 1024 (1192)
Q Consensus 945 TLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~ 1024 (1192)
||+++|+|+|+|++|+|+|||+||++++.+++|++|++|||||+||+|||||||++.. +++|
T Consensus 1327 TL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sd----------------- 1388 (1522)
T TIGR00957 1327 SLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSD----------------- 1388 (1522)
T ss_pred HHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCH-----------------
Confidence 9999999999999999999999999999999999999999999999999999997432 3444
Q ss_pred cCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCC
Q psy13234 1025 SFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104 (1192)
Q Consensus 1025 ~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSA 1104 (1192)
||+++||+.|+++|+|.++|+||||+|||+|.+||||||||||||||++|+|+||||||||||
T Consensus 1389 -----------------eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSa 1451 (1522)
T TIGR00957 1389 -----------------EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAA 1451 (1522)
T ss_pred -----------------HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 455555599999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHH
Q psy13234 1105 LDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQ 1172 (1192)
Q Consensus 1105 LD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~ 1172 (1192)
||++||+.||++|++.+++||+|+||||++|+.+||||+||++|+|+|+|+|+||++++|.|++||++
T Consensus 1452 lD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1452 VDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 24
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=8.7e-80 Score=745.00 Aligned_cols=502 Identities=29% Similarity=0.475 Sum_probs=439.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 622 GMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 701 (1192)
Q Consensus 622 ~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~divia 701 (1192)
...++.+++.++..+.++++...+|..+|+++.+.|.+++++.++|++++++++|++.+++.....+..++..++.+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~ 145 (571)
T TIGR02203 66 LRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGL 145 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999999999999999999999999999999999999999999999988776655555554443333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHH
Q psy13234 702 IVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQ 781 (1192)
Q Consensus 702 iv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~ 781 (1192)
++ +++.++|+++++++++++++++...++.++..+..++..+..++..+.+.|.++|+++||++|.++++.++|++..+
T Consensus 146 ~~-~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~ 224 (571)
T TIGR02203 146 FI-VLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSN 224 (571)
T ss_pred HH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHH
Confidence 33 44567899999998888888878778877777777888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13234 782 TYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVP 861 (1192)
Q Consensus 782 ~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~ 861 (1192)
+..+...+......+...+..++..+..++.++++++. +.+|++|+|.++++.+++.++..|+..+......++++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~ 303 (571)
T TIGR02203 225 RNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQ-AQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAA 303 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887777777777777666666666777777 78899999999999999999999999999999999888888
Q ss_pred CccccccccccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCC
Q psy13234 862 LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSG 940 (1192)
Q Consensus 862 ~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SG 940 (1192)
.+|+.+..+.++. ..+ +....+...++++ ++|++|+|++ ++++++++| +.+++|++ ++|+|+||
T Consensus 304 ~~ri~~~l~~~~~-----~~~--~~~~~~~~~~~i~--~~~v~f~y~~~~~~il~~in---l~i~~G~~---v~IvG~sG 368 (571)
T TIGR02203 304 AESLFTLLDSPPE-----KDT--GTRAIERARGDVE--FRNVTFRYPGRDRPALDSIS---LVIEPGET---VALVGRSG 368 (571)
T ss_pred HHHHHHHHcCCCC-----CCC--CCCCCCCCCCeEE--EEEEEEEcCCCCCccccCee---EEecCCCE---EEEECCCC
Confidence 8887665321100 000 0011111234677 9999999975 467999999 99999999 99999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhcccc-CCCHHHHHHHhhhhhh
Q psy13234 941 AGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARI-NASEEEVKEAATSADI 1019 (1192)
Q Consensus 941 SGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~-~asdEeV~eAa~~a~l 1019 (1192)
||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||||||+++++ +++++|+.+|+
T Consensus 369 sGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l----- 443 (571)
T TIGR02203 369 SGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERAL----- 443 (571)
T ss_pred CCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999986 67777777776
Q ss_pred hhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEe
Q psy13234 1020 HERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLD 1099 (1192)
Q Consensus 1020 h~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLD 1099 (1192)
+.+++++++.++|+||||+|||+|.+||||||||||||||++++|+|++||
T Consensus 444 -----------------------------~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD 494 (571)
T TIGR02203 444 -----------------------------AAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD 494 (571)
T ss_pred -----------------------------HHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1100 EATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1100 EATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
||||+||++||+.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|+|++++++.|++++..|.
T Consensus 495 Epts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~ 569 (571)
T TIGR02203 495 EATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQF 569 (571)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHhh
Confidence 999999999999999999999899999999999999999999999999999999999999999999999998664
No 25
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=5.1e-82 Score=722.26 Aligned_cols=512 Identities=27% Similarity=0.336 Sum_probs=433.7
Q ss_pred HHHHHHHhhhccccccccccccCCCchhhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy13234 558 IVFTTMALYLGKNTVGERGLKLSGGEKQRVAIALNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGV 637 (1192)
Q Consensus 558 Il~~~~~lYi~~~~ig~~G~~lSGGqkqri~~al~s~~~~~l~~~~~~vli~l~~~ii~~~~~~~~~~l~~~rs~l~~~v 637 (1192)
|++++.++|| .|+|||+++|.+.++++++. ++..+.+.+.++++.+|+.+++++
T Consensus 37 iL~L~~~lyM----------------LQVyDRVL~S~s~~TLv~Lt----------vlal~ly~~~glLd~iR~~~l~Ri 90 (580)
T COG4618 37 LLALTGPLYM----------------LQVYDRVLPSRSVPTLVMLT----------VLALGLYAFQGLLDAIRSRVLVRI 90 (580)
T ss_pred HHHHhhhHHH----------------HHHHhhhccCCCcchHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999 99999999999999997765 334455667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHH
Q psy13234 638 QQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVF--FVSTFSTWYGV 715 (1192)
Q Consensus 638 ~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~--ll~~~~~~lal 715 (1192)
+.+++++++.++|....+.+..-....+..+.++ |++++..+........++|.++.++| +++.+|||+++
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~Lr-------DL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~ 163 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLR-------DLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGL 163 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHhhcCCCccccchh-------hHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876554444545443 34444445556778899999999887 46788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---
Q psy13234 716 IVFTTMALYLVTSIVVTEWRTKF-QRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNS--- 791 (1192)
Q Consensus 716 Ivl~~l~l~li~~~~l~~~~~k~-~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~--- 791 (1192)
+.++++.+.+. ..+++++.++. .++.++...+.+.....+.+|.|+|+++|+.+...+||.+....+.+.+.+.+
T Consensus 164 ~a~~ga~iLv~-la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 164 IALAGAIILVV-LALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99998887544 44566666554 56667777788888889999999999999999999999998888877654433
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q psy13234 792 -----LSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKT 866 (1192)
Q Consensus 792 -----~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~ 866 (1192)
.++.+.+.+|..+.+ +++|+ +.+|++|+|.+++-...+.+..+|+......++.+..+..+..|+.
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg--------~GA~L-vi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~ 313 (580)
T COG4618 243 GAFGALSRALRMALQSAVLG--------LGAWL-VIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLN 313 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHh--------cceee-EEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544 34777 8899999998877777777999999988777777766555555655
Q ss_pred ccccccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHH
Q psy13234 867 NAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKST 945 (1192)
Q Consensus 867 ~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKST 945 (1192)
+..+. .+......++|++++.+. .|++.+..|+ ++++++++| |.+.+|+. +||||||||||||
T Consensus 314 ~lL~~--------~p~~~~~m~LP~P~g~L~--Ve~l~~~PPg~~~pil~~is---F~l~~G~~---lgIIGPSgSGKST 377 (580)
T COG4618 314 ELLAE--------LPAAAERMPLPAPQGALS--VERLTAAPPGQKKPILKGIS---FALQAGEA---LGIIGPSGSGKST 377 (580)
T ss_pred HHHHh--------CccccCCCCCCCCCceee--EeeeeecCCCCCCcceecce---eEecCCce---EEEECCCCccHHH
Confidence 54211 112233567778888888 9999998776 569999999 99999999 9999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhcc
Q psy13234 946 IIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILS 1025 (1192)
Q Consensus 946 LlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~ 1025 (1192)
|.|+|.|.++|.+|+|++||.|+++|+.+++.+||||.|||..||+|||+|||+=.++++|+|+|+|||
T Consensus 378 LaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA----------- 446 (580)
T COG4618 378 LARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAA----------- 446 (580)
T ss_pred HHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHH-----------
Confidence 999999999999999999999999999999999999999999999999999997444689999999999
Q ss_pred CCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q psy13234 1026 FPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105 (1192)
Q Consensus 1026 ~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSAL 1105 (1192)
+.|+.||.|.++|+||||.|||+|..||||||||||||||+|.||.+++||||+|||
T Consensus 447 -----------------------~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNL 503 (580)
T COG4618 447 -----------------------RLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNL 503 (580)
T ss_pred -----------------------HHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1106 DTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1106 D~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|.+.|+.+.++|.+.+ +|+|+|+||||+|.+..+|+|+||+||++..+|+.+|.+++
T Consensus 504 D~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 504 DSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred chhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999998765 56999999999999999999999999999999999999875
No 26
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.5e-80 Score=747.11 Aligned_cols=504 Identities=25% Similarity=0.374 Sum_probs=428.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 624 GVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIV 703 (1192)
Q Consensus 624 ~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv 703 (1192)
.++.+++..+....+++...++|.++|+|+.++|+++|++.++|++++++++|++.++.........++..++..++.++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK10789 50 YLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLI 129 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777888999999999999999999999999999999999999999999986555444444433333333333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q psy13234 704 FFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTY 783 (1192)
Q Consensus 704 ~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~ 783 (1192)
++++.++|.+++++++++|+++++...+.++..+..++..+..++..+.+.|++.|+++||+||.|+.+.++|.+..++.
T Consensus 130 ~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~ 209 (569)
T PRK10789 130 VMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDT 209 (569)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 33346788888888888888777776676666666667777788889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy13234 784 QVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLP 863 (1192)
Q Consensus 784 ~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~e 863 (1192)
.+...+..............+...+.++.++++++. +.+|++|+|+++++..|..++..|+..+......++++..+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l-v~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ 288 (569)
T PRK10789 210 GKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWM-VVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYS 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877776666665555555555555555667776 7889999999999999999999999999888888888887788
Q ss_pred cccccccccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCc
Q psy13234 864 KKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAG 942 (1192)
Q Consensus 864 rl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSG 942 (1192)
|+.+..+.++. ..+.. ...+..++.++ +++++|+|+. ++++++++| +++++|+. +|||||||||
T Consensus 289 ri~~ll~~~~~-----~~~~~--~~~~~~~~~I~--~~~v~~~y~~~~~~~l~~i~---~~i~~G~~---~~ivG~sGsG 353 (569)
T PRK10789 289 RIRAMLAEAPV-----VKDGS--EPVPEGRGELD--VNIRQFTYPQTDHPALENVN---FTLKPGQM---LGICGPTGSG 353 (569)
T ss_pred HHHHHHcCCCc-----ccCCC--CCCCCCCCcEE--EEEEEEECCCCCCccccCee---EEECCCCE---EEEECCCCCC
Confidence 87766322100 00000 01112234577 9999999986 467899999 99999999 9999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhh
Q psy13234 943 KSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHER 1022 (1192)
Q Consensus 943 KSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~ 1022 (1192)
||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||++||+|||+++++++++|++.+|+
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~-------- 425 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVA-------- 425 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999998888887777777
Q ss_pred hccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy13234 1023 ILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEAT 1102 (1192)
Q Consensus 1023 i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEAT 1102 (1192)
+.+++++++.++|+||||.+||+|.+|||||||||+||||++++|+|+||||||
T Consensus 426 --------------------------~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 426 --------------------------RLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred --------------------------HHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhccC
Q psy13234 1103 SALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTKQ 1177 (1192)
Q Consensus 1103 SALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~~~ 1177 (1192)
|+||+++|+.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||++++|.|++||+.|..+.
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~~~ 554 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQLEA 554 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhhhcc
Confidence 999999999999999998889999999999999999999999999999999999999999999999999876543
No 27
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.7e-79 Score=746.21 Aligned_cols=500 Identities=32% Similarity=0.435 Sum_probs=421.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 627 NNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFV 706 (1192)
Q Consensus 627 ~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll 706 (1192)
.+....+......+....++.++|+|+.++|+++|++.++|++++++++|++.+.+.....+...+..++..++ .+.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (588)
T PRK13657 73 GVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVV-LLPLA 151 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34444455556666667778899999999999999999999999999999998876655554444444333222 22344
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHH
Q psy13234 707 STFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVA 786 (1192)
Q Consensus 707 ~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~ 786 (1192)
+.++|+++++++++++++.++...+.++..+..++..+..++..+...|.+.|+++||+||.++.+.+++.+..++..+.
T Consensus 152 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~ 231 (588)
T PRK13657 152 LFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAA 231 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 56788898888888888777777777666666777777888899999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q psy13234 787 EYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKT 866 (1192)
Q Consensus 787 ~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~ 866 (1192)
..+......+...+..++..++.++.++++++. +.+|++|+|+++++..+..++..|+..+......+..+....+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~ 310 (588)
T PRK13657 232 QMPVLSWWALASVLNRAASTITMLAILVLGAAL-VQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFF 310 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666666666666656666666777777 7889999999999999999999999999888888777766666665
Q ss_pred ccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHH
Q psy13234 867 NAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTI 946 (1192)
Q Consensus 867 ~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTL 946 (1192)
+..+.++. ..+..+....+..++.++ ++|++|+|+.++++++++| +.+++|++ +||||+||||||||
T Consensus 311 ~l~~~~~~-----~~~~~~~~~~~~~~~~I~--~~~vsf~y~~~~~iL~~in---l~i~~G~~---v~IvG~sGsGKSTL 377 (588)
T PRK13657 311 EVEDAVPD-----VRDPPGAIDLGRVKGAVE--FDDVSFSYDNSRQGVEDVS---FEAKPGQT---VAIVGPTGAGKSTL 377 (588)
T ss_pred HHhCCCcc-----cCCCCCCCCcCCCCCeEE--EEEEEEEeCCCCceeccee---EEECCCCE---EEEECCCCCCHHHH
Confidence 55221100 000001111111224577 9999999986667999999 99999999 99999999999999
Q ss_pred HHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccC
Q psy13234 947 IRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSF 1026 (1192)
Q Consensus 947 lrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~ 1026 (1192)
+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||++++|+++|||+.+|+
T Consensus 378 l~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al------------ 445 (588)
T PRK13657 378 INLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAA------------ 445 (588)
T ss_pred HHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999998888888777777
Q ss_pred CCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q psy13234 1027 PDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106 (1192)
Q Consensus 1027 pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD 1106 (1192)
+.+++++++.++|+||||.+||+|.+||||||||||||||++++|+|+||||||||||
T Consensus 446 ----------------------~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD 503 (588)
T PRK13657 446 ----------------------ERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503 (588)
T ss_pred ----------------------HHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhc
Q psy13234 1107 TKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175 (1192)
Q Consensus 1107 ~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~ 1175 (1192)
++||+.|.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|+||+++++.|++++..|..
T Consensus 504 ~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 572 (588)
T PRK13657 504 VETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQGM 572 (588)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHhhc
Confidence 999999999999988899999999999999999999999999999999999999999999999987653
No 28
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.7e-80 Score=810.87 Aligned_cols=500 Identities=22% Similarity=0.326 Sum_probs=394.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 627 NNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFV 706 (1192)
Q Consensus 627 ~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll 706 (1192)
..++..++...+.+..+++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.++.+++++.
T Consensus 967 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~ 1046 (1495)
T PLN03232 967 TFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIG 1046 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667788889999999999999999999999999999999999999999999988777777666665555444332
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHH
Q psy13234 707 STFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVA 786 (1192)
Q Consensus 707 ~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~ 786 (1192)
. .+++..++++...+++.+...+..+..++.++......++..+++.|++.|++|||+||.++++.+++++..+...+.
T Consensus 1047 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~ 1125 (1495)
T PLN03232 1047 T-VSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRF 1125 (1495)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 2 233333222222222222222222333344555566778899999999999999999999999888888887777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13234 787 EYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTL----T-VGDYTLFVSYILQLYVPLNWFDALTRYLEASLVP 861 (1192)
Q Consensus 787 ~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~i----T-vG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~ 861 (1192)
.+.......|+......+..+.+.+ .+.+.+...+.+ . .+.+..+.+|..++..|++.+...+..++.+..+
T Consensus 1126 ~~~~~~~~~wl~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 1202 (1495)
T PLN03232 1126 TLANTSSNRWLTIRLETLGGVMIWL---TATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNS 1202 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555555555444333222111 122221223322 1 3344567788889999999999988999999998
Q ss_pred CccccccccccccccccccccccccccccccccccccccccceeeecCC-CCccccccccceeecCCcccceEEEEcCCC
Q psy13234 862 LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSG 940 (1192)
Q Consensus 862 ~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SG 940 (1192)
.+|+.+..+.+..... ..+...+....+.++.++ |+||+|+|+++ +++++|+| +++++|++ +|||||||
T Consensus 1203 ~eRi~e~~~~~~e~~~--~~~~~~~~~~~p~~g~I~--f~nVsf~Y~~~~~~vL~~is---l~I~~Gek---vaIVG~SG 1272 (1495)
T PLN03232 1203 VERVGNYIDLPSEATA--IIENNRPVSGWPSRGSIK--FEDVHLRYRPGLPPVLHGLS---FFVSPSEK---VGVVGRTG 1272 (1495)
T ss_pred HHHHHHHhcCCccccc--cccCCCCCCCCCCCCcEE--EEEEEEEECCCCCcccccce---EEEcCCCE---EEEECCCC
Confidence 9998877322210000 000000000011236688 99999999764 67999999 99999999 99999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhh
Q psy13234 941 AGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIH 1020 (1192)
Q Consensus 941 SGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh 1020 (1192)
||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++|||||+||+|||||||++++ +++|||+.+|+
T Consensus 1273 SGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al------ 1345 (1495)
T PLN03232 1273 AGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEAL------ 1345 (1495)
T ss_pred CCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999875 45555555555
Q ss_pred hhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q psy13234 1021 ERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE 1100 (1192)
Q Consensus 1021 ~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDE 1100 (1192)
+.|+++|+|.++|+||||+|||+|.+||||||||||||||++|+|+||||||
T Consensus 1346 ----------------------------~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDE 1397 (1495)
T PLN03232 1346 ----------------------------ERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDE 1397 (1495)
T ss_pred ----------------------------HHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHHHHHhhc
Q psy13234 1101 ATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERN-GVYASMWIQQNT 1175 (1192)
Q Consensus 1101 ATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L~~~Q~~ 1175 (1192)
||||||++||+.||++|++.+++||+|+||||++|+.+||+|+||++|+|+|+|+|+||++++ |.|++|++.+..
T Consensus 1398 ATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1398 ATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999999999999999999999999886 599999987754
No 29
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.1e-79 Score=807.79 Aligned_cols=498 Identities=22% Similarity=0.321 Sum_probs=406.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy13234 633 LWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTW 712 (1192)
Q Consensus 633 l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~~~~ 712 (1192)
.....+.+..+++|.++|+++++.|+.||+++++|++++|+++|++.+++.+...+..++..++.++.++++ ++..+|+
T Consensus 1021 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~-~~~~~p~ 1099 (1560)
T PTZ00243 1021 LSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV-TSASQPF 1099 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 334455566789999999999999999999999999999999999999999888777777666665555443 3345565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 713 YGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSL 792 (1192)
Q Consensus 713 lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~ 792 (1192)
+.++++.+..++..+..++.+..++.++......++..+++.|++.|++|||+||+++++.++|.+..+...+..+....
T Consensus 1100 ~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~ 1179 (1560)
T PTZ00243 1100 VLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENV 1179 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444433334333444444555555666677888899999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc-
Q psy13234 793 SLVFLNSLQNLIITGGLLAGSLLCVHEV-VNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKE- 870 (1192)
Q Consensus 793 ~~~~l~~lq~li~~~gll~~~ll~a~~v-v~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~- 870 (1192)
...|+....+++..+..++.++++++.. ...+.+++|.++++++|..++..|+..+...+..+++++.+.+|+.+..+
T Consensus 1180 ~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~ 1259 (1560)
T PTZ00243 1180 ANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDE 1259 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7788777776665544333333333321 23445789999999999999999999999999999998888888776531
Q ss_pred c--cccccccc--------------------cccc-cc-cccccccccccccccccceeeecCC-CCccccccccceeec
Q psy13234 871 C--RTISCICH--------------------LTKA-VT-RIVLKRIENKIEENMEEDQFGFRKG-KGTRDAIGCLRMIAL 925 (1192)
Q Consensus 871 ~--~~~~~~~~--------------------v~~~-~~-~i~l~~~~g~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~ 925 (1192)
. ++...... ..+. +. ..+.....++++ |+||+|+|+++ +++|+|+| |.++
T Consensus 1260 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~--f~nVsf~Y~~~~~~vL~~vs---f~I~ 1334 (1560)
T PTZ00243 1260 VPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLV--FEGVQMRYREGLPLVLRGVS---FRIA 1334 (1560)
T ss_pred CCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEE--EEEEEEEeCCCCCceeecce---EEEC
Confidence 1 10000000 0000 00 000011235688 99999999875 45999999 9999
Q ss_pred CCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCC
Q psy13234 926 ESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINA 1005 (1192)
Q Consensus 926 ~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~a 1005 (1192)
+|++ +||||+||||||||+++|+|+|+|++|+|+|||+||++++.+++|++||||||||+||+|||||||++++ ++
T Consensus 1335 ~Gek---VaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~ 1410 (1560)
T PTZ00243 1335 PREK---VGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EA 1410 (1560)
T ss_pred CCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CC
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999998653 45
Q ss_pred CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q psy13234 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAI 1085 (1192)
Q Consensus 1006 sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIAL 1085 (1192)
+||||++| |+.|+++|+|.++|+||||+|||+|.||||||||||||
T Consensus 1411 sdeeI~~A----------------------------------l~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaL 1456 (1560)
T PTZ00243 1411 SSAEVWAA----------------------------------LELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCM 1456 (1560)
T ss_pred CHHHHHHH----------------------------------HHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHH
Confidence 55555555 49999999999999999999999999999999999999
Q ss_pred HHHhcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhc-C
Q psy13234 1086 ARTLLKA-PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER-N 1163 (1192)
Q Consensus 1086 ARALLrd-P~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~-~ 1163 (1192)
||||+|+ |+||||||||||||++||+.|+++|++.++++|+|+||||++|+.+||+|+||++|+|+|+|+|+||+++ +
T Consensus 1457 ARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~ 1536 (1560)
T PTZ00243 1457 ARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQ 1536 (1560)
T ss_pred HHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 9999996 8999999999999999999999999999999999999999999999999999999999999999999985 8
Q ss_pred cHHHHHHHHhh
Q psy13234 1164 GVYASMWIQQN 1174 (1192)
Q Consensus 1164 G~Ya~L~~~Q~ 1174 (1192)
|.|++|++.+.
T Consensus 1537 ~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1537 SIFHSMVEALG 1547 (1560)
T ss_pred CHHHHHHHHhC
Confidence 99999998764
No 30
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7.4e-78 Score=731.92 Aligned_cols=502 Identities=28% Similarity=0.386 Sum_probs=426.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 626 LNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFF 705 (1192)
Q Consensus 626 l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~l 705 (1192)
..+++..+..++..++..++|.++|+|+.++|+++|+++++|++++++++|++.+.+.....+...+..++.+++.+ ++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 150 (585)
T TIGR01192 72 AYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLI-PT 150 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34445555556666677778889999999999999999999999999999999998877766655555544433332 34
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHH
Q psy13234 706 VSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQV 785 (1192)
Q Consensus 706 l~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~ 785 (1192)
++.++|.+++++++++|+++++...+.++..+..++..+..++..+.+.|+++|+++||+||.|+.+.+++++..+++.+
T Consensus 151 l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~ 230 (585)
T TIGR01192 151 AFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLS 230 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 55689999999988888887777777776666666677777888999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy13234 786 AEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKK 865 (1192)
Q Consensus 786 ~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl 865 (1192)
...+......+...+..++..++.++..+++++. +.+|++|+|+++++..+...+..|+..+......++.+..+.+|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri 309 (585)
T TIGR01192 231 AQYPVLDWWALASGLNRMASTISMMCILVIGTVL-VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDF 309 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666666666555555555666677776 778999999999999999999999999988888888777777776
Q ss_pred cccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHH
Q psy13234 866 TNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKST 945 (1192)
Q Consensus 866 ~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKST 945 (1192)
.+..+.++. ..+..+....+..++.++ ++|++|+|++++++++++| +.+++|+. +||||||||||||
T Consensus 310 ~~~~~~~~~-----~~~~~~~~~~~~~~~~i~--~~~v~~~y~~~~~~l~~i~---~~i~~G~~---~~ivG~sGsGKST 376 (585)
T TIGR01192 310 FDLEDSVFQ-----REEPADAPELPNVKGAVE--FRHITFEFANSSQGVFDVS---FEAKAGQT---VAIVGPTGAGKTT 376 (585)
T ss_pred HHHHcCCcc-----ccCCccCCCCCCCCCeEE--EEEEEEECCCCCcccccee---EEEcCCCE---EEEECCCCCCHHH
Confidence 665321100 000000001112234577 9999999987667899999 99999999 9999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhcc
Q psy13234 946 IIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILS 1025 (1192)
Q Consensus 946 LlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~ 1025 (1192)
|+++|+|+|+|++|+|++||+|+++++.+++|++++||||||++|++||+|||++++|++++||+.+|+
T Consensus 377 L~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~----------- 445 (585)
T TIGR01192 377 LINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAA----------- 445 (585)
T ss_pred HHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHH-----------
Confidence 999999999999999999999999999999999999999999999999999999998888888888777
Q ss_pred CCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q psy13234 1026 FPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105 (1192)
Q Consensus 1026 ~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSAL 1105 (1192)
+.+++++++.++|+||||.+||+|.+|||||||||+||||++++|+|+|||||||+|
T Consensus 446 -----------------------~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~L 502 (585)
T TIGR01192 446 -----------------------KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSAL 502 (585)
T ss_pred -----------------------HHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhcc
Q psy13234 1106 DTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTK 1176 (1192)
Q Consensus 1106 D~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~~ 1176 (1192)
|++||+.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+|+++++|.|+++|+.|...
T Consensus 503 D~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~~ 573 (585)
T TIGR01192 503 DVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSGLL 573 (585)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhCccc
Confidence 99999999999999988999999999999999999999999999999999999999999999999988543
No 31
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.7e-78 Score=728.54 Aligned_cols=463 Identities=22% Similarity=0.285 Sum_probs=391.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviai 702 (1192)
..++.+++..+....++++..++|.++|+|++++|.++|++.++|++++++++|++.+++........++..++..++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 145 (529)
T TIGR02868 66 RAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAV 145 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888999999999999999999999999999999999999999999999887765555555544333333
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHH
Q psy13234 703 VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWR-TKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQ 781 (1192)
Q Consensus 703 v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~-~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~ 781 (1192)
.+++.++|.++++++++++++.++...+..+. ++..++..+..++..+.+.|.++|+++||+||.|+++.++|++..+
T Consensus 146 -~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~ 224 (529)
T TIGR02868 146 -AAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADR 224 (529)
T ss_pred -HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHH
Confidence 34566789999888887777655554444433 3445566677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13234 782 TYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVP 861 (1192)
Q Consensus 782 ~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~ 861 (1192)
++.+...+..........+..++..++.++..+++++. +.+|++|+|.++++..+...+..|+..+......++++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 303 (529)
T TIGR02868 225 ELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPA-VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAA 303 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877777777777776666666666777777 77899999999999999999999999998888888888777
Q ss_pred CccccccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCC
Q psy13234 862 LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGA 941 (1192)
Q Consensus 862 ~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGS 941 (1192)
.+|+.+..+.++... ..+.+.........++++ ++||+|+|++++++++|+| +++++|++ +||||||||
T Consensus 304 ~~ri~~~l~~~~~~~---~~~~~~~~~~~~~~~~I~--~~~vsf~Y~~~~~vL~~is---l~i~~G~~---vaIvG~SGs 372 (529)
T TIGR02868 304 AERIEEVTGAKGPRP---EGVVPAAGALGLGKPTLE--LRDLSFGYPGSPPVLDGVS---LDLPPGER---VAILGPSGS 372 (529)
T ss_pred HHHHHHHhcCCCCcC---CCCCCCCcccCCCCceEE--EEEEEEecCCCCceeecce---EEEcCCCE---EEEECCCCC
Confidence 787776632211000 000000000111224577 9999999987677999999 99999999 999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhh
Q psy13234 942 GKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHE 1021 (1192)
Q Consensus 942 GKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~ 1021 (1192)
|||||+++|+|+|+|++|+|++||+|++++ .+++|++|+||||||+||+|||||||+||+|+++|||+.+|+
T Consensus 373 GKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al------- 444 (529)
T TIGR02868 373 GKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAAL------- 444 (529)
T ss_pred CHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHH-------
Confidence 999999999999999999999999999999 999999999999999999999999999999988888888888
Q ss_pred hhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q psy13234 1022 RILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101 (1192)
Q Consensus 1022 ~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEA 1101 (1192)
+.|+++|+|.++|+||||+|||+|.+||||||||||||||+++||+|+|||||
T Consensus 445 ---------------------------~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~ 497 (529)
T TIGR02868 445 ---------------------------ERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEP 497 (529)
T ss_pred ---------------------------HHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEEecCh
Q psy13234 1102 TSALDTKTERNIQSALNRVCASRTTIIVAHRL 1133 (1192)
Q Consensus 1102 TSALD~eTE~~Iq~aL~~l~~grTvIvIAHRL 1133 (1192)
|||||++||+.|+++|++..+++|+|+||||+
T Consensus 498 TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 498 TEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999996
No 32
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.6e-77 Score=724.50 Aligned_cols=502 Identities=30% Similarity=0.447 Sum_probs=424.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 624 GVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIV 703 (1192)
Q Consensus 624 ~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv 703 (1192)
....+.+.++...+++++...+|.++|+++.+.|.++|++.++|++++++++|++.++++.......++..++.+++. +
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~ 150 (576)
T TIGR02204 72 ALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGG-L 150 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 345567778888999999999999999999999999999999999999999999999887765544444444333332 2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q psy13234 704 FFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTY 783 (1192)
Q Consensus 704 ~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~ 783 (1192)
++++.++|++++++++.++++++...++.++..+..++..+..++..+.+.|.++|+++||+++.|+++.++|++..++.
T Consensus 151 ~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~ 230 (576)
T TIGR02204 151 IMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKA 230 (576)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHH
Confidence 34456788888888887777766666677767777777778888889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy13234 784 QVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLP 863 (1192)
Q Consensus 784 ~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~e 863 (1192)
.+...+......+...+...+.....++..+++++. +.+|.+|+|+++++..+..++..|+..+......++.+..+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ 309 (576)
T TIGR02204 231 YEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHD-VIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAE 309 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776666656555555544444444555566776 7788999999999999999999999999988888888888888
Q ss_pred cccccccccccccccccccccccccccccccccccccccceeeecCC--CCccccccccceeecCCcccceEEEEcCCCC
Q psy13234 864 KKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKG--KGTRDAIGCLRMIALESQLVWYLLQVGQSGA 941 (1192)
Q Consensus 864 rl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~--~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGS 941 (1192)
|+.+..+.++... ........+ .+..+.++ ++|++|+|+.+ +++++++| +++++|+. +||+|+|||
T Consensus 310 ri~~~l~~~~~~~---~~~~~~~~~-~~~~~~i~--~~~v~f~y~~~~~~~iL~~in---l~i~~Ge~---i~IvG~sGs 377 (576)
T TIGR02204 310 RLIELLQAEPDIK---APAHPKTLP-VPLRGEIE--FEQVNFAYPARPDQPALDGLN---LTVRPGET---VALVGPSGA 377 (576)
T ss_pred HHHHHhCCCCcCC---CCCCCccCC-cCCCceEE--EEEEEEECCCCCCCcccccee---EEecCCCE---EEEECCCCC
Confidence 8776632110000 000000000 11124577 99999999753 57899999 99999999 999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhh
Q psy13234 942 GKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHE 1021 (1192)
Q Consensus 942 GKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~ 1021 (1192)
|||||+++|+|+|+|++|+|++||+|+++++.+++|++|+|+||||++|+|||+|||++++|+++||++.+++
T Consensus 378 GKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l------- 450 (576)
T TIGR02204 378 GKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAA------- 450 (576)
T ss_pred CHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999998877777777766
Q ss_pred hhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q psy13234 1022 RILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101 (1192)
Q Consensus 1022 ~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEA 1101 (1192)
+.+++++++.++|+|+||++||+|.+|||||||||+||||++++|+|+|||||
T Consensus 451 ---------------------------~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEp 503 (576)
T TIGR02204 451 ---------------------------RAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEA 503 (576)
T ss_pred ---------------------------HHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCc
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHh
Q psy13234 1102 TSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173 (1192)
Q Consensus 1102 TSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q 1173 (1192)
||+||++||+.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|+|++++++.|++||+.|
T Consensus 504 ts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 504 TSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 999999999999999999988999999999999999999999999999999999999999999999999876
No 33
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.3e-76 Score=780.47 Aligned_cols=505 Identities=18% Similarity=0.290 Sum_probs=410.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 625 VLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVF 704 (1192)
Q Consensus 625 ~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ 704 (1192)
.+..+|..++...+.+..+++|.++|+++++.|++||+++++|++++|+++|++.+++.+...+..++..++.+++.+++
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~ 1019 (1490)
T TIGR01271 940 ALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFV 1019 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888889999999999999999999999999999999999999999999999988777777766655555443
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHH
Q psy13234 705 FVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQ 784 (1192)
Q Consensus 705 ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~ 784 (1192)
++..+|+++++++..+++++++..++.+..++.++......+++.+++.|++.|+.|||+||+++++.+++.+..+...
T Consensus 1020 -i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1020 -VSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3445676655544444444444444444445555666677788999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy13234 785 VAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPK 864 (1192)
Q Consensus 785 ~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~er 864 (1192)
+..+.......|+....+++..+..+++.+++ +.....+.|.+..+++|...+..+++.+...+..++.++.+.+|
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~----~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eR 1174 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIA----IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSR 1174 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776665443332222221 11123566777778888889999999888888888888888888
Q ss_pred cccccccccc-ccccccccc---------ccccccc--ccccccccccccceeeecC-CCCccccccccceeecCCcccc
Q psy13234 865 KTNAKECRTI-SCICHLTKA---------VTRIVLK--RIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVW 931 (1192)
Q Consensus 865 l~~~~~~~~~-~~~~~v~~~---------~~~i~l~--~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge 931 (1192)
+.+..+.+.. ......... ......+ +.++.++ |+||+|+|++ .+++++|+| +++++|++
T Consensus 1175 i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~--f~nVs~~Y~~~~~~vL~~is---~~I~~Gek-- 1247 (1490)
T TIGR01271 1175 VFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMD--VQGLTAKYTEAGRAVLQDLS---FSVEGGQR-- 1247 (1490)
T ss_pred HHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEE--EEEEEEEeCCCCcceeeccE---EEEcCCCE--
Confidence 8776321110 000000000 0000000 1236788 9999999986 478999999 99999999
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHH
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVK 1011 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~ 1011 (1192)
+||||+||||||||+++|+|+|+ ++|+|+|||+||++++.+++|++|+||||||+||+|||||||++.+
T Consensus 1248 -vaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~--------- 1316 (1490)
T TIGR01271 1248 -VGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE--------- 1316 (1490)
T ss_pred -EEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc---------
Confidence 99999999999999999999998 7999999999999999999999999999999999999999997542
Q ss_pred HHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcC
Q psy13234 1012 EAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK 1091 (1192)
Q Consensus 1012 eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLr 1091 (1192)
+++|+++|+||+.++++++|.++|+||||+|||+|.+||||||||||||||++|
T Consensus 1317 --------------------------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1317 --------------------------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred --------------------------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 245666666669999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
+|+||||||||||||.+||+.|++.|++.+++||+|+||||++++.+||+|+||++|+|+|.|+|+||++++|.|++|++
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~ 1450 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMS 1450 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhccCC
Q psy13234 1172 QQNTKQS 1178 (1192)
Q Consensus 1172 ~Q~~~~~ 1178 (1192)
.+.....
T Consensus 1451 ~~~~~~~ 1457 (1490)
T TIGR01271 1451 AADRLKL 1457 (1490)
T ss_pred HhChhcc
Confidence 7765443
No 34
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5e-76 Score=707.13 Aligned_cols=472 Identities=23% Similarity=0.309 Sum_probs=399.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviai 702 (1192)
..++.+++.++..+++++...++|.++|+|++++|.++|++.++|++++++++|++.+++........++..++..+++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~- 135 (529)
T TIGR02857 57 RALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAI- 135 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3566778888899999999999999999999999999999999999999999999999987765554444444333332
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q psy13234 703 VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQT 782 (1192)
Q Consensus 703 v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~ 782 (1192)
+.+++.++|++++++++++|+..++...+.++..+..++..+..++..+.+.|+++|+++||+||.|+++.++|++..++
T Consensus 136 ~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~ 215 (529)
T TIGR02857 136 LAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEE 215 (529)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHH
Confidence 33455678888888888877766666666666666666777778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13234 783 YQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPL 862 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~ 862 (1192)
+.+...+..........+..++..++.++..+++++. +.+|++|+|.++++..+..++..|+..+......++++..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~ 294 (529)
T TIGR02857 216 YRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFR-LLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAA 294 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777776666666666655555444444455565 558899999999999999999999999988888888888888
Q ss_pred ccccccccccccccccccccccccccccccccccccccccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCC
Q psy13234 863 PKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGA 941 (1192)
Q Consensus 863 erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGS 941 (1192)
+|+.+..+.++. ..+. .... ....++++ ++|++|+|+++ +++++++| +++++|++ +||||||||
T Consensus 295 ~ri~~ll~~~~~-----~~~~-~~~~-~~~~~~i~--~~~v~f~y~~~~~~il~~i~---l~i~~G~~---~~ivG~sGs 359 (529)
T TIGR02857 295 EALFAVLDAPRP-----LAGK-APVT-AAPAPSLE--FSGLSVAYPGRRAPALRPVS---FTVPPGER---VALVGPSGA 359 (529)
T ss_pred HHHHHHhCCCcc-----cCCC-cCCC-CCCCCeEE--EEEEEEECCCCCccccccee---EEECCCCE---EEEECCCCC
Confidence 887766321100 0000 0111 11124577 99999999864 47999999 99999999 999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhh
Q psy13234 942 GKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHE 1021 (1192)
Q Consensus 942 GKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~ 1021 (1192)
|||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|||++++++++|||+.+|+
T Consensus 360 GKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~------- 432 (529)
T TIGR02857 360 GKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRAL------- 432 (529)
T ss_pred CHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999998877877777777
Q ss_pred hhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q psy13234 1022 RILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101 (1192)
Q Consensus 1022 ~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEA 1101 (1192)
+.++++|+|.++|+||||++||+|.+||||||||++||||++++|+|+|||||
T Consensus 433 ---------------------------~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ 485 (529)
T TIGR02857 433 ---------------------------ERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485 (529)
T ss_pred ---------------------------HHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEE
Q psy13234 1102 TSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 1145 (1192)
Q Consensus 1102 TSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVL 1145 (1192)
||+||++||+.|+++|++..+++|+|+||||+++++.||+|++|
T Consensus 486 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 486 TAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999998899999999999999999999986
No 35
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2e-75 Score=765.17 Aligned_cols=600 Identities=23% Similarity=0.289 Sum_probs=458.3
Q ss_pred ccccceeeeeechhHHHHHHHHHHHHHHhH----HHHHHHHHHHHHhhhccccccccccccCCCchhhhhhhhhccCCCC
Q psy13234 523 SNLLNYVLFQIIPTILDIVIAIVFFVSTFS----TWYGVIVFTTMALYLGKNTVGERGLKLSGGEKQRVAIALNSLVDKP 598 (1192)
Q Consensus 523 ~~vl~~~lF~~~~tivDili~ii~~i~af~----~~fglIl~~~~~lYi~~~~ig~~G~~lSGGqkqri~~al~s~~~~~ 598 (1192)
++++++.+|+| |+..|....+++++++.. .|+..++++.+.--+ . .+ ..
T Consensus 43 ~~~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~----~-------~~---------------~~ 95 (1466)
T PTZ00265 43 QKIPFFLPFKC-LPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNM----N-------LG---------------EN 95 (1466)
T ss_pred ccccHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-------cc---------------ch
Confidence 78899999999 888898888888887655 222222333222111 0 00 01
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHH
Q psy13234 599 LVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTD 678 (1192)
Q Consensus 599 l~~~~~~vli~l~~~ii~~~~~~~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~ 678 (1192)
+.. .++.++. ......++.+++..++..+++++.+++|.++|+|++++|++||+..++|++.++++.|++
T Consensus 96 ~~~---~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~ 165 (1466)
T PTZ00265 96 VND---IIFSLVL-------IGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLE 165 (1466)
T ss_pred HHH---HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHH
Confidence 100 0111111 112234567888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy13234 679 SISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLL 758 (1192)
Q Consensus 679 ~I~~ll~~~l~~il~~l~diviaiv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~ 758 (1192)
.+++.+...+..++..++.++.+ +++++.++|.+++++++++|+++++..++.++..+..++..+..++..+.+.|++.
T Consensus 166 ~i~~~i~~~~~~~~~~~~~~i~~-~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~ 244 (1466)
T PTZ00265 166 QVNAGIGTKFITIFTYASAFLGL-YIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALV 244 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988777666666665544333 33556689999999999999988888777777766666777777889999999999
Q ss_pred hHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cccHHH
Q psy13234 759 NFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQ--------TLTVGD 830 (1192)
Q Consensus 759 Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g--------~iTvG~ 830 (1192)
|+++||+||.|+++.++|.+..+++.+...+......+...+..++..+..++++++|+++ +.+| .+++|+
T Consensus 245 gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~l-v~~g~~~~~~~~~~t~g~ 323 (1466)
T PTZ00265 245 GIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRI-IISDLSNQQPNNDFHGGS 323 (1466)
T ss_pred ChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcccccccccchhH
Confidence 9999999999999999999999998888888777777766666666666667777888887 5553 578888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccccccccccccccccceeeecCC
Q psy13234 831 YTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKG 910 (1192)
Q Consensus 831 lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~ 910 (1192)
++++..+......++..+......++.+..+.+|+.+..+.+.. ..+..+....+.. ..++ ++||+|+|+.+
T Consensus 324 v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~-----~~~~~~~~~~~~~-~~I~--~~nVsf~Y~~~ 395 (1466)
T PTZ00265 324 VISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPL-----VENNDDGKKLKDI-KKIQ--FKNVRFHYDTR 395 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCCCCCccCCCC-CcEE--EEEEEEEcCCC
Confidence 87766665544444444444555666677777777766221100 0001111111111 3577 99999999853
Q ss_pred --CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE-CCeecCCCChHhhcccEEEEcCCC
Q psy13234 911 --KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFI-DNQNIKTVSQASLRQAIGVVPQDT 987 (1192)
Q Consensus 911 --~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~I-DG~DI~~i~~~sLR~~Ig~VPQDp 987 (1192)
+++++++| +.+++|+. +|||||||||||||+++|.|+|+|++|+|++ ||+|+++++.+++|++||||||+|
T Consensus 396 ~~~~vL~~is---l~i~~Ge~---vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~ 469 (1466)
T PTZ00265 396 KDVEIYKDLN---FTLTEGKT---YAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDP 469 (1466)
T ss_pred CCCceeccce---EEEcCCCE---EEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccc
Confidence 47999999 99999999 9999999999999999999999999999999 579999999999999999999999
Q ss_pred ccccccHHHHHhccccCCCH---------------H-------HHHHHhhhhhhhhhhc--cCCCCCchhhhhhcccHHH
Q psy13234 988 VLFNNSIKFNIQYARINASE---------------E-------EVKEAATSADIHERIL--SFPDGYDTQYARINASEEE 1043 (1192)
Q Consensus 988 ~LFnGTIreNI~~G~~~asd---------------E-------eV~eAa~~a~lh~~i~--~~pd~~~~~~~~~~~sdee 1043 (1192)
.||++||+|||+||.+...+ + +..+++ ....++... +..+-.+......+++|++
T Consensus 470 ~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 548 (1466)
T PTZ00265 470 LLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKC-AGDLNDMSNTTDSNELIEMRKNYQTIKDSE 548 (1466)
T ss_pred cchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccc-cchhhhcccccchhhhhhcccccccCCHHH
Confidence 99999999999998532100 0 000000 000000000 0000000000012478999
Q ss_pred HHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--
Q psy13234 1044 VKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-- 1121 (1192)
Q Consensus 1044 I~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-- 1121 (1192)
+++|++.+++|++|.++|+||||.||++|.+||||||||||||||++++|+|||||||||+||+++|+.|+++|+++.
T Consensus 549 v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~ 628 (1466)
T PTZ00265 549 VVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN 628 (1466)
T ss_pred HHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCceEEEEecChhHHHhcCEEEEEeCC-----------------------------------------------EEEEEc
Q psy13234 1122 ASRTTIIVAHRLSTIIHADEILVMHAG-----------------------------------------------EIVERG 1154 (1192)
Q Consensus 1122 ~grTvIvIAHRLSTI~~aDrIlVLe~G-----------------------------------------------~IvE~G 1154 (1192)
+++|+|+||||+++++.||+|+||++| +|+|+|
T Consensus 629 ~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~G 708 (1466)
T PTZ00265 629 ENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQG 708 (1466)
T ss_pred CCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeC
Confidence 479999999999999999999999986 599999
Q ss_pred CHHHHHh-cCcHHHHHHHHhhcc
Q psy13234 1155 RHEELLE-RNGVYASMWIQQNTK 1176 (1192)
Q Consensus 1155 theELL~-~~G~Ya~L~~~Q~~~ 1176 (1192)
||+||++ ++|.|++|.+.|...
T Consensus 709 th~~L~~~~~g~y~~l~~~q~~~ 731 (1466)
T PTZ00265 709 THDALMKNKNGIYYTMINNQKVS 731 (1466)
T ss_pred CHHHHHhccCCcHHHHHhhhccc
Confidence 9999998 699999999888643
No 36
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-75 Score=673.74 Aligned_cols=487 Identities=24% Similarity=0.349 Sum_probs=388.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy13234 632 LLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA--IVFFVSTF 709 (1192)
Q Consensus 632 ~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~divia--iv~ll~~~ 709 (1192)
..-....-++..++|.++|+++...++.-....++||+++|+..|++.++++.-.+. .|.+..++.. .++...++
T Consensus 80 lvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi---~P~~~a~~~~~~~~i~L~f~ 156 (573)
T COG4987 80 LVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVI---APAVVALVLIAVVTIGLSFF 156 (573)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHH---hhHHHHHHHHHHHHHHHHHh
Confidence 333445556779999999999999999999999999999999988888887655444 4444433322 22334467
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Q psy13234 710 STWYGVIVFTTMALYLVTS-IVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEY 788 (1192)
Q Consensus 710 ~~~lalIvl~~l~l~li~~-~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~ 788 (1192)
+|++++.+.+.+.+.+++. ....+..++..+...+..+.+.+++.|.+.|....+.||+++.+.+.+.+..+.+.+.+.
T Consensus 157 ~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~ 236 (573)
T COG4987 157 SIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQR 236 (573)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 8887766555544433332 233333344556677788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccccc
Q psy13234 789 QNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFD-ALTRYLEASLVPLPKKTN 867 (1192)
Q Consensus 789 ~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~-~~~~~l~~a~~~~erl~~ 867 (1192)
+......+..+.+.++.+..++..+++.+-. +..|..+.-...++...+...+.++.-+. .......+...+.+|+.+
T Consensus 237 k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~-~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~ 315 (573)
T COG4987 237 KQARFTGLSDAILLLIAGLLVIGLLLWMAAQ-VGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLND 315 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhh
Confidence 9998888888888877766555455555544 45565553222222222233333333232 333444555555666666
Q ss_pred cccccccccccccccccccccccccccccccccccceeeecCCC-CccccccccceeecCCcccceEEEEcCCCCcHHHH
Q psy13234 868 AKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGK-GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTI 946 (1192)
Q Consensus 868 ~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~-~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTL 946 (1192)
..+++.. +..+.+.. +.....++ ++|++|+|++++ ++++|+| +.+.+||+ +||+|+|||||||+
T Consensus 316 i~~q~~e-----~~~~~~~~--~~~~~~l~--~~~vsF~y~~~~~~~L~~~~---l~l~~GEk---vAIlG~SGsGKSTl 380 (573)
T COG4987 316 ILDQKPE-----VTFPDEQT--ATTGQALE--LRNVSFTYPGQQTKALKNFN---LTLAQGEK---VAILGRSGSGKSTL 380 (573)
T ss_pred hccCCcc-----cCCCcccc--CCccceee--eccceeecCCCccchhhccc---eeecCCCe---EEEECCCCCCHHHH
Confidence 5322210 00000011 11112456 999999999754 8999999 99999999 99999999999999
Q ss_pred HHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccC
Q psy13234 947 IRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSF 1026 (1192)
Q Consensus 947 lrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~ 1026 (1192)
+++|.|.|+|++|+|+.+|.++++++.+.+|+.|++++|.++||+||+||||++++|++||||+++|+
T Consensus 381 lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL------------ 448 (573)
T COG4987 381 LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAAL------------ 448 (573)
T ss_pred HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred CCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q psy13234 1027 PDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106 (1192)
Q Consensus 1027 pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD 1106 (1192)
+++|+++++++.|+||+|.+||+|.+||||||||+||||++|+|+|+++|||||.+||
T Consensus 449 ----------------------~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD 506 (573)
T COG4987 449 ----------------------QQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLD 506 (573)
T ss_pred ----------------------HHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1107 TKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1107 ~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
++||++|.+.|.+..+|||+|+||||+..+++||||+||++|+++|+|+|+||++++|.|++|++
T Consensus 507 ~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 507 PITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred hhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 37
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.6e-74 Score=692.25 Aligned_cols=482 Identities=24% Similarity=0.303 Sum_probs=401.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNY-VLFQIIPTILDIVIA 701 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~-~l~~il~~l~divia 701 (1192)
..++.+++.++...+++++..++|.++|+|++++|++. .++..+++.+|++.+++.... ....++..++. ++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~-~~~ 132 (544)
T TIGR01842 59 LGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWM-PIY 132 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHH
Confidence 34567778888889999999999999999999999842 355677788888888876554 22222222222 222
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHH
Q psy13234 702 IVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQ 781 (1192)
Q Consensus 702 iv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~ 781 (1192)
+ .+++.++|++++++++++++++++..+..+..++..++..+..++..+.+.|+++|+++||+||.|+++.++|++..+
T Consensus 133 ~-~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~ 211 (544)
T TIGR01842 133 L-LVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHS 211 (544)
T ss_pred H-HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHH
Confidence 2 345678899988888777776665555555555556667778888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13234 782 TYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVP 861 (1192)
Q Consensus 782 ~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~ 861 (1192)
++.+...+..........+..++...+.++..++++++ +.+|++|+|+++++..+..++..|+..+......++++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~ 290 (544)
T TIGR01842 212 KYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYL-AIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQA 290 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777766666666655555555555555667776 77899999999999999999999999999999888888888
Q ss_pred CccccccccccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCC
Q psy13234 862 LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSG 940 (1192)
Q Consensus 862 ~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SG 940 (1192)
.+|+.+..+.++. ..+. ...+..++.++ ++|++|+|+. ++++++++| +++++|+. +|||||||
T Consensus 291 ~~ri~~~l~~~~~-----~~~~---~~~~~~~~~i~--~~~v~~~y~~~~~~~l~~~~---~~i~~G~~---~~ivG~sG 354 (544)
T TIGR01842 291 YKRLNELLANYPS-----RDPA---MPLPEPEGHLS--VENVTIVPPGGKKPTLRGIS---FRLQAGEA---LAIIGPSG 354 (544)
T ss_pred HHHHHHHHhCCcc-----ccCC---CCCCCCCCeEE--EEEEEEEcCCCCccccccce---EEEcCCCE---EEEECCCC
Confidence 8887776322110 0000 01112224577 9999999975 467899999 99999999 99999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhh
Q psy13234 941 AGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIH 1020 (1192)
Q Consensus 941 SGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh 1020 (1192)
||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||++|++||+|||+++++++++|++.+|+
T Consensus 355 sGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~------ 428 (544)
T TIGR01842 355 SGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAA------ 428 (544)
T ss_pred CCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999887777777777766
Q ss_pred hhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q psy13234 1021 ERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE 1100 (1192)
Q Consensus 1021 ~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDE 1100 (1192)
+.+++++++.++|+||||.+||+|.+||||||||+|||||+++||+|+||||
T Consensus 429 ----------------------------~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDE 480 (544)
T TIGR01842 429 ----------------------------KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE 480 (544)
T ss_pred ----------------------------HHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1101 ATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1101 ATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|||+||++||+.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+|++++
T Consensus 481 pts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 481 PNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred CccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999885 67999999999999999999999999999999999999763
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-73 Score=749.71 Aligned_cols=470 Identities=18% Similarity=0.220 Sum_probs=371.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy13234 635 IGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYG 714 (1192)
Q Consensus 635 ~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~~~~la 714 (1192)
.+++.++...++..+|+|+++++...+++.++|+++++++.|++.++++.. .+..++...+.+++++ +.+.+.++
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~----~~l~~~lg 440 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSM----VLLYQQLG 440 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHh
Confidence 456677888899999999999999999999999999999999999998753 2333332222222222 22223333
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 715 VIVFTTM---ALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNS 791 (1192)
Q Consensus 715 lIvl~~l---~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~ 791 (1192)
+.+++++ ++++.+..++.++..+.+++..+..++..+...|.++|+++||+||+|+.+.+++++..++..+...+..
T Consensus 441 ~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~ 520 (1495)
T PLN03232 441 VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ 520 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222 2222234455666677777777888888899999999999999999999999999888777666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Q psy13234 792 LSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKEC 871 (1192)
Q Consensus 792 ~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~ 871 (1192)
....+...+..... .++..+.++++. +.+|.+|+|.++++.++...+..|+..+......+.++..+.+|+.+..+.
T Consensus 521 ~~~~~~~~~~~~~~--~~~~~~~fg~~~-v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 521 LLSAFNSFILNSIP--VVVTLVSFGVFV-LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44443333222211 122224456665 668889999999999999999999999998888888888888888776322
Q ss_pred cccccccccccccccccccccccccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHH
Q psy13234 872 RTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRL 949 (1192)
Q Consensus 872 ~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrL 949 (1192)
++. ..+...+. ....+.++ ++|++|+|+. ++++++|+| +++++|+. +|||||||||||||+++
T Consensus 598 ~~~-----~~~~~~~~--~~~~~~I~--~~~vsF~y~~~~~~~vL~~in---l~i~~Ge~---vaIvG~sGSGKSTLl~l 662 (1495)
T PLN03232 598 EER-----ILAQNPPL--QPGAPAIS--IKNGYFSWDSKTSKPTLSDIN---LEIPVGSL---VAIVGGTGEGKTSLISA 662 (1495)
T ss_pred ccc-----cccccCCc--CCCCCcEE--EEeeEEEcCCCCCCceeeeeE---EEEcCCCE---EEEECCCCCcHHHHHHH
Confidence 110 00000000 11123566 9999999975 467899999 99999999 99999999999999999
Q ss_pred HhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCC
Q psy13234 950 LFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDG 1029 (1192)
Q Consensus 950 LlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~ 1029 (1192)
|+|+|+|++|.+. ++|++|+||||+|+||+|||||||+||++ .++|
T Consensus 663 LlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e--------------------- 708 (1495)
T PLN03232 663 MLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESE--------------------- 708 (1495)
T ss_pred HhCCCcccCCCEE------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHH---------------------
Confidence 9999999999773 47889999999999999999999999974 4444
Q ss_pred CchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHH
Q psy13234 1030 YDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109 (1192)
Q Consensus 1030 ~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eT 1109 (1192)
++++|+++|++++++.++|+|+||+|||+|.+||||||||||||||+|+||+|+||||||||||++|
T Consensus 709 -------------~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t 775 (1495)
T PLN03232 709 -------------RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHV 775 (1495)
T ss_pred -------------HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 4455559999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1110 ERNIQS-ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1110 E~~Iq~-aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
|++|.+ .++...++||+|+||||++++..||+|++|++|+|+|.|+|+||+++++.|+++++.+.
T Consensus 776 ~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 776 AHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAG 841 (1495)
T ss_pred HHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcc
Confidence 999954 56777789999999999999999999999999999999999999999999999998765
No 39
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.3e-68 Score=647.16 Aligned_cols=473 Identities=16% Similarity=0.202 Sum_probs=372.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 625 VLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVF 704 (1192)
Q Consensus 625 ~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ 704 (1192)
++.+.+.++....+.++..++|.++|+|++++|+.+|++.++|++++++++|++.++++... ...++..++..++ .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~-~~~ 145 (555)
T TIGR01194 68 LFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFF-CIA 145 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHH-HHH
Confidence 45566777788889999999999999999999999999999999999999999999987753 3344444333332 233
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchH--HHHHHHHHHHHH
Q psy13234 705 FVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEE--YEIKEYGKAIQT 782 (1192)
Q Consensus 705 ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~--~~~~rf~~~~~~ 782 (1192)
+++.++|.+++++++.+|+.+++..+..++..+..++..+..++..+...|.+.|++++|+||.++ .+.+++.+..++
T Consensus 146 ~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~ 225 (555)
T TIGR01194 146 YLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANN 225 (555)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHH
Confidence 455678999888887777765555555555555556666777888999999999999999999954 567888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13234 783 YQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPL 862 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~ 862 (1192)
+.+...+..............+..+...+.+++++ ..+++|+|+++++..+...+..|+..++.....++++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~ 301 (555)
T TIGR01194 226 IADLHIIEILIFIAAENFGQLLFFLLIGCALFAAA----MFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766655443333333222222222111122222 23689999999999999999999999999999999988888
Q ss_pred ccccccccc-ccccccccccccccc--ccccccccccccccccceeeecCC----CCccccccccceeecCCcccceEEE
Q psy13234 863 PKKTNAKEC-RTISCICHLTKAVTR--IVLKRIENKIEENMEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQ 935 (1192)
Q Consensus 863 erl~~~~~~-~~~~~~~~v~~~~~~--i~l~~~~g~I~~~fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAI 935 (1192)
+|+.++.+. ++.....+..+..+. .......+.++ ++||+|+|+++ +++++++| +++++|+. +||
T Consensus 302 ~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~v~f~y~~~~~~~~~~l~~vs---~~i~~G~~---~ai 373 (555)
T TIGR01194 302 QRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE--LKDVHMNPKAPEGSEGFALGPID---LRIAQGDI---VFI 373 (555)
T ss_pred HHHHHHHhhhccccccccccccccccccccCCCCceEE--EEEEEEEeCCCCCCcCceeccce---EEEcCCcE---EEE
Confidence 888776321 000000000000000 01111124577 99999999753 35899999 99999999 999
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhh
Q psy13234 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAAT 1015 (1192)
Q Consensus 936 VG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~ 1015 (1192)
|||||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|++||||++||++|+++|+ .+++++|++.+++
T Consensus 374 vG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~- 449 (555)
T TIGR01194 374 VGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYL- 449 (555)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999999999999995 3556666666665
Q ss_pred hhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q psy13234 1016 SADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQI 1095 (1192)
Q Consensus 1016 ~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~I 1095 (1192)
+.+++++++.++|+||||. .+||||||||||||||+++||+|
T Consensus 450 ---------------------------------~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~i 491 (555)
T TIGR01194 450 ---------------------------------QRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPI 491 (555)
T ss_pred ---------------------------------HHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999999999995 78999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH-HH-cCCceEEEEecChhHHHhcCEEEEEeCCEEEEE
Q psy13234 1096 VLLDEATSALDTKTERNIQSALN-RV-CASRTTIIVAHRLSTIIHADEILVMHAGEIVER 1153 (1192)
Q Consensus 1096 LLLDEATSALD~eTE~~Iq~aL~-~l-~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~ 1153 (1192)
+|||||||+||++||+.|++.+. +. .+++|+|+||||++++..||+|++|++|+++|.
T Consensus 492 lilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 492 LLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999998774 33 468999999999999999999999999999974
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-67 Score=696.68 Aligned_cols=472 Identities=20% Similarity=0.254 Sum_probs=369.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy13234 635 IGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYG 714 (1192)
Q Consensus 635 ~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~~~~la 714 (1192)
.+++.++...++..+|+|+++++..++.+.++|+++++++.|++.++++... +..++...+.++++++++...+. +.+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg-~~~ 443 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLG-VAS 443 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4677888889999999999999999999999999999999999999998743 33333333333333222221111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 715 VIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSL 794 (1192)
Q Consensus 715 lIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~ 794 (1192)
++.++++++.+.+..++.++..+.+++..+..++..+...|.++|+++||+||+|+.+.+++++..++..+...+.....
T Consensus 444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~ 523 (1622)
T PLN03130 444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS 523 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333344455566666677777777888889999999999999999999999999887766555444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy13234 795 VFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTI 874 (1192)
Q Consensus 795 ~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~~~~ 874 (1192)
.+...+...+. .++..+.++++. +.+|.+|+|.+++++++...+..|+..+......+.++..+.+|+.+....++.
T Consensus 524 ~~~~~~~~~~~--~~v~~~~fg~~~-~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~ 600 (1622)
T PLN03130 524 AFNSFILNSIP--VLVTVVSFGVFT-LLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEER 600 (1622)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 33332222211 122333455665 668899999999999999999999999988888888888888887766321110
Q ss_pred ccccccccccccccccccccccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhc
Q psy13234 875 SCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 875 ~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlR 952 (1192)
. ....... ....+.++ ++|++|+|+. ++++++++| +.+++|+. +|||||||||||||+++|+|
T Consensus 601 ~-----~~~~~~~--~~~~~~I~--~~nvsf~y~~~~~~~vL~~in---l~i~~Ge~---vaIvG~sGSGKSTLl~lLlG 665 (1622)
T PLN03130 601 V-----LLPNPPL--EPGLPAIS--IKNGYFSWDSKAERPTLSNIN---LDVPVGSL---VAIVGSTGEGKTSLISAMLG 665 (1622)
T ss_pred c-----cccCCcc--cCCCCceE--EEeeEEEccCCCCCceeecee---EEecCCCE---EEEECCCCCCHHHHHHHHHH
Confidence 0 0000000 01113567 9999999975 367899999 99999999 99999999999999999999
Q ss_pred CCCCCC-ceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCc
Q psy13234 953 FYDVES-GDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYD 1031 (1192)
Q Consensus 953 lydp~s-GsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~ 1031 (1192)
+++|++ |+|.+ |++|+||||+|+||+|||||||+||+| .+
T Consensus 666 ~~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d------------------------- 706 (1622)
T PLN03130 666 ELPPRSDASVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSP-FD------------------------- 706 (1622)
T ss_pred hhccCCCceEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCc-cc-------------------------
Confidence 999999 99974 668999999999999999999999975 23
Q ss_pred hhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q psy13234 1032 TQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111 (1192)
Q Consensus 1032 ~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~ 1111 (1192)
++++++|+++|+++++|..||+|+||+|||+|.+||||||||||||||+|+||+|+||||||||||+++++
T Consensus 707 ---------~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~ 777 (1622)
T PLN03130 707 ---------PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR 777 (1622)
T ss_pred ---------HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHH
Confidence 45555666999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1112 NI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1112 ~I-q~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
+| ++.++...++||+|+||||++.+..||+|++|++|+|+|+|+|+||+++++.|+++++.+.
T Consensus 778 ~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~ 841 (1622)
T PLN03130 778 QVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAG 841 (1622)
T ss_pred HHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcc
Confidence 88 4667777789999999999999999999999999999999999999999999999998654
No 41
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.3e-63 Score=655.16 Aligned_cols=476 Identities=21% Similarity=0.266 Sum_probs=367.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy13234 634 WIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWY 713 (1192)
Q Consensus 634 ~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~~~~l 713 (1192)
..+++.++...++..+|+|+++++...+++.++|+++++++.|++.+.+.... +..+....+.++++++++ +....+.
T Consensus 382 ~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~ll-~~~~g~~ 459 (1522)
T TIGR00957 382 CFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATY-INMIWSAPLQVILALYFL-WLNLGPS 459 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHhHH
Confidence 34567788899999999999999999999999999999999999999876542 333333333333333222 2122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 714 GVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLS 793 (1192)
Q Consensus 714 alIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~ 793 (1192)
+++.++++++++.+..++.++..+.+++..+..++..+...|.++|+++||+||+|+.+.+++++..++..+...+....
T Consensus 460 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~ 539 (1522)
T TIGR00957 460 VLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYL 539 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666777777777788888888889999999999999999999999999988776655544433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Q psy13234 794 LVFLNSLQNLIITGGLLAGSLLCVHEVVN-NQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECR 872 (1192)
Q Consensus 794 ~~~l~~lq~li~~~gll~~~ll~a~~vv~-~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~~ 872 (1192)
..+......... .++..+.++++.+.. ++.++++..+.+++++..+..|+..+......+.++..+.+|+.+....+
T Consensus 540 ~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~ 617 (1522)
T TIGR00957 540 HAVGTFTWVCTP--FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHE 617 (1522)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 322222111111 111112233444222 35688998888888888999999999988888888888888877763221
Q ss_pred ccccccccccccccccccc-cccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHH
Q psy13234 873 TISCICHLTKAVTRIVLKR-IENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLL 950 (1192)
Q Consensus 873 ~~~~~~~v~~~~~~i~l~~-~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLL 950 (1192)
+.. .+.......+. ..+.++ ++|++|+|+. ++++++++| +.+++|+. ++|+||||||||||+++|
T Consensus 618 ~~~-----~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~l~~is---l~i~~G~~---v~IvG~~GsGKSTLl~~l 684 (1522)
T TIGR00957 618 ELE-----PDSIERRTIKPGEGNSIT--VHNATFTWARDLPPTLNGIT---FSIPEGAL---VAVVGQVGCGKSSLLSAL 684 (1522)
T ss_pred ccc-----cccccccccCCCCCCcEE--EEEeEEEcCCCCCceeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHH
Confidence 100 00000000000 112466 9999999975 467999999 99999999 999999999999999999
Q ss_pred hcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCC
Q psy13234 951 FRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGY 1030 (1192)
Q Consensus 951 lRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~ 1030 (1192)
+|+++|++|+|.+|| +|+||||+|++|++||+|||.+|++ .+
T Consensus 685 ~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~------------------------ 726 (1522)
T TIGR00957 685 LAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LN------------------------ 726 (1522)
T ss_pred hCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cC------------------------
Confidence 999999999999998 4999999999999999999999863 23
Q ss_pred chhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q psy13234 1031 DTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110 (1192)
Q Consensus 1031 ~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE 1110 (1192)
+++++++++.|++.+++..+|+|+||.+||+|.+||||||||||||||++++|+|++|||||||||++++
T Consensus 727 ----------~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~ 796 (1522)
T TIGR00957 727 ----------EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796 (1522)
T ss_pred ----------HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 3444555589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1111 RNIQSALNR---VCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1111 ~~Iq~aL~~---l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
+.|.+.+.+ ..+++|+|+||||++.+..||+|++|++|+|++.|+|+|++++++.|+++...+.
T Consensus 797 ~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~ 863 (1522)
T TIGR00957 797 KHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYA 863 (1522)
T ss_pred HHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhc
Confidence 999999853 4578999999999999999999999999999999999999999999999987554
No 42
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.7e-64 Score=607.42 Aligned_cols=472 Identities=18% Similarity=0.197 Sum_probs=354.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 626 LNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFF 705 (1192)
Q Consensus 626 l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~l 705 (1192)
+.+++.++...+++++..++|.++|+|++++|+++|+++++|++++++++|++.+...... +..++..++..+++ +++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~-~~~ 141 (547)
T PRK10522 64 VTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGS-AAY 141 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHH-HHH
Confidence 4456667777888999999999999999999999999999999999999999988875442 23333333332222 334
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCch---HHHHHHHHHHHHH
Q psy13234 706 VSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAE---EYEIKEYGKAIQT 782 (1192)
Q Consensus 706 l~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E---~~~~~rf~~~~~~ 782 (1192)
++.++|.+++++++++|+.+++..++.++..+..++..+..++..+.+.|.++|+++++ ++.+ +.+.+++++..++
T Consensus 142 l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~ 220 (547)
T PRK10522 142 LAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQE 220 (547)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHH
Confidence 56679999999888888877776677776666667777788889999999999999996 5543 4567888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13234 783 YQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPL 862 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~ 862 (1192)
+.+...+.............++......+..+++. . .+..+.+..+++..+...+..|+..+......++++....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~ 296 (547)
T PRK10522 221 YRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMAN-S---LGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAF 296 (547)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655554433332222222111111111111111 1 1112444445555566667789999988888888887778
Q ss_pred ccccccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCc
Q psy13234 863 PKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAG 942 (1192)
Q Consensus 863 erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSG 942 (1192)
+|+.+..+.+.. .+.++....+. .+.++ ++|++|+|+.++++++++| +.+++|++ +|||||||||
T Consensus 297 ~ri~~l~~~~~~------~~~~~~~~~~~-~~~i~--~~~v~f~y~~~~~~l~~i~---~~i~~G~~---~aivG~sGsG 361 (547)
T PRK10522 297 NKLNKLALAPYK------AEFPRPQAFPD-WQTLE--LRNVTFAYQDNGFSVGPIN---LTIKRGEL---LFLIGGNGSG 361 (547)
T ss_pred HHHHHHhccccc------cccccccccCc-CceEE--EEEEEEEeCCCCeEEecce---EEEcCCCE---EEEECCCCCC
Confidence 887665321100 00000000111 14577 9999999986667999999 99999999 9999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhh
Q psy13234 943 KSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHER 1022 (1192)
Q Consensus 943 KSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~ 1022 (1192)
||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|| + +++++|++.+++
T Consensus 362 KSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~-------- 429 (547)
T PRK10522 362 KSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWL-------- 429 (547)
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHH--------
Confidence 9999999999999999999999999999999999999999999999999999999 2 345555555444
Q ss_pred hccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy13234 1023 ILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEAT 1102 (1192)
Q Consensus 1023 i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEAT 1102 (1192)
+.+++++.+. .|+|. ++|.+||||||||++||||+++||+|+||||||
T Consensus 430 --------------------------~~~~l~~~~~-~~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 430 --------------------------ERLKMAHKLE-LEDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred --------------------------HHcCCchhhh-ccccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 6666666554 24442 248999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCceEEEEecChhHHHhcCEEEEEeCCEEEEE-cCHHHHHhcC
Q psy13234 1103 SALDTKTERNIQSALNRVC--ASRTTIIVAHRLSTIIHADEILVMHAGEIVER-GRHEELLERN 1163 (1192)
Q Consensus 1103 SALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~-GtheELL~~~ 1163 (1192)
|+||++||+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |+|.+-..++
T Consensus 478 s~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~~~~~~ 541 (547)
T PRK10522 478 ADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASRD 541 (547)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchhhhhhh
Confidence 9999999999999997654 47999999999999999999999999999987 6776655443
No 43
>KOG0054|consensus
Probab=100.00 E-value=9.4e-62 Score=615.52 Aligned_cols=475 Identities=22% Similarity=0.302 Sum_probs=375.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy13234 635 IGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYG 714 (1192)
Q Consensus 635 ~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~~~~la 714 (1192)
.+++.++...+-..+|+|.++++...-....+|+++|.++.|++++++...+... +....+.+++++.++.-.+. +.+
T Consensus 267 ~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~-~w~~Plqi~~~l~lLy~~LG-~sa 344 (1381)
T KOG0054|consen 267 FRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHL-LWSAPLQIILALYLLYGLLG-PSA 344 (1381)
T ss_pred HhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC-hHH
Confidence 4566677778888899999999998888889999999999999999998776543 33334444444333322222 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 715 VIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSL 794 (1192)
Q Consensus 715 lIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~ 794 (1192)
++.++.+.+++.+..++.+...+++++..+..++.-....|.++|+++||.|+||+.+.++..+.-++..+.-.+.....
T Consensus 345 ~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~ 424 (1381)
T KOG0054|consen 345 LAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLS 424 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556677788888888888888777777788889999999999999999988887776655544444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy13234 795 VFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTI 874 (1192)
Q Consensus 795 ~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~~~~ 874 (1192)
++..+.....-.+. ..+.++++....++.+|+...+..+++...+..|+..+....+.+.++.++++|+.+....++.
T Consensus 425 ~~~~~~~~~~p~lv--~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~ 502 (1381)
T KOG0054|consen 425 ALNSFLNFFSPVLV--SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL 502 (1381)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 33333222221111 1122223221235678888888889999999999999999888888889999998777322211
Q ss_pred ccccccccccccccccccccccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhc
Q psy13234 875 SCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 875 ~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlR 952 (1192)
. .+...+....+.+..++ ++|.+|++++ .++.++||| +++++|+. +||||+.|||||||+.+|+|
T Consensus 503 ~-----~~~~~~~~~~~~~~~i~--i~~~sfsW~~~~~~~tL~dIn---~~i~~G~l---vaVvG~vGsGKSSLL~AiLG 569 (1381)
T KOG0054|consen 503 D-----PDSVERSPDEAGENAIE--IKNGSFSWDSESPEPTLKDIN---FEIKKGQL---VAVVGPVGSGKSSLLSAILG 569 (1381)
T ss_pred C-----ccccccCCCCCCCceEE--EeeeeEecCCCCCccccccee---EEecCCCE---EEEECCCCCCHHHHHHHHhc
Confidence 0 00000001111123455 8999999875 455899999 99999999 99999999999999999999
Q ss_pred CCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCch
Q psy13234 953 FYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDT 1032 (1192)
Q Consensus 953 lydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~ 1032 (1192)
..+..+|++.++|. ++||||+|++|||||||||.||.
T Consensus 570 Em~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~------------------------------ 606 (1381)
T KOG0054|consen 570 EMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGS------------------------------ 606 (1381)
T ss_pred CcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCc------------------------------
Confidence 99999999999995 99999999999999999999996
Q ss_pred hhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH
Q psy13234 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112 (1192)
Q Consensus 1033 ~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~ 1112 (1192)
+++++++++|+++|++.++++.||+|..|.|||||.||||||||||+||||+|+|++|++||+|.||+|+++.++
T Consensus 607 -----~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~ 681 (1381)
T KOG0054|consen 607 -----PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKH 681 (1381)
T ss_pred -----cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHH
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1113 I-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1113 I-q~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
| .+.|+...++||+|.|||+++.+++||+|++|+||+|.|.|+|+||++.++.|.++..+..
T Consensus 682 if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~ 744 (1381)
T KOG0054|consen 682 IFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEE 744 (1381)
T ss_pred HHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccc
Confidence 9 5678888899999999999999999999999999999999999999999999999954443
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.6e-60 Score=586.70 Aligned_cols=470 Identities=16% Similarity=0.156 Sum_probs=376.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 626 LNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFF 705 (1192)
Q Consensus 626 l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~l 705 (1192)
..+++..+...+.+++.+.++++.|++....++.+|++ ++|++.+|+++|++.+.+.....+..++..++++++..+++
T Consensus 155 ~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 155 IKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555667778888999999999999999999986 88999999999999999988888888888888777666655
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHH
Q psy13234 706 VSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQV 785 (1192)
Q Consensus 706 l~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~ 785 (1192)
....+|.+++++++..|+..++..++.++..+..++..+..+...+...|.++|+++||+|+.|+.+.+++++..++..+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 55578888888888888888888888888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHhc----CcccHHHHHH-HHHH---HHHHHHHHHHHHHHHHHH
Q psy13234 786 AEYQNSLSLVFLNSLQNLIITGG-LLAGSLLC-VHEVVNN----QTLTVGDYTL-FVSY---ILQLYVPLNWFDALTRYL 855 (1192)
Q Consensus 786 ~~~~~~~~~~~l~~lq~li~~~g-ll~~~ll~-a~~vv~~----g~iTvG~lvl-~lsy---i~ql~~PL~~l~~~~~~l 855 (1192)
...+........+.+.+++...+ ..++.+++ ...+... |.+|+|+++. +.++ +.++..|+..+......+
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777777665321 22222222 2222222 6799888665 5554 567799999999999998
Q ss_pred HHhcCCCcccccccccc-cccc----ccccccccc-------------cccccccccccccccccceeeecCCCCccccc
Q psy13234 856 EASLVPLPKKTNAKECR-TISC----ICHLTKAVT-------------RIVLKRIENKIEENMEEDQFGFRKGKGTRDAI 917 (1192)
Q Consensus 856 ~~a~~~~erl~~~~~~~-~~~~----~~~v~~~~~-------------~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~I 917 (1192)
+++....+|+.++.+.+ +... .....+..+ ....+...+.++ ++|++|+|+.++++++++
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~nv~~~~~~~~~il~~i 471 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIK--FENIPLVTPNGDVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEE--EEeeEEECCCCCeeeecc
Confidence 88888888877663211 0000 000000000 001111224566 999999997666799999
Q ss_pred cccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHH
Q psy13234 918 GCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFN 997 (1192)
Q Consensus 918 SvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreN 997 (1192)
| +.+++|+. +||+||||||||||+++|.|+++|++|+|.+|+ |++|+||||+|.+|++|++||
T Consensus 472 s---l~i~~Ge~---~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~en 534 (659)
T TIGR00954 472 S---FEVPSGNH---LLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQ 534 (659)
T ss_pred e---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHH
Confidence 9 99999999 999999999999999999999999999999874 678999999999999999999
Q ss_pred HhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCCh
Q psy13234 998 IQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSG 1077 (1192)
Q Consensus 998 I~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSG 1077 (1192)
|.++... ++.. ..+.++++++++++.+++++++.+ |.||||..++ +.+|||
T Consensus 535 i~~~~~~---~~~~------------------------~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~-~~~LSg 585 (659)
T TIGR00954 535 IIYPDSS---EDMK------------------------RRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDW-MDVLSG 585 (659)
T ss_pred HhcCCCh---hhhh------------------------ccCCCHHHHHHHHHHcCCHHHHhh-cCCccccccc-ccCCCH
Confidence 9987420 0000 002346677777899999999988 9999999875 679999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEe
Q psy13234 1078 GEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH 1146 (1192)
Q Consensus 1078 GQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe 1146 (1192)
|||||++||||++++|+++|||||||+||+++++.+.+.+++. ++|+|+||||++++..||+|++|+
T Consensus 586 GqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999874 899999999999999999999997
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9e-57 Score=592.72 Aligned_cols=470 Identities=19% Similarity=0.204 Sum_probs=361.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 630 RSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTF 709 (1192)
Q Consensus 630 rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~ 709 (1192)
..+....++.++...+...+|+|+++++...+++.++|+++++++.|++.+........ .+....+.+++++++ ++..
T Consensus 142 ~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~-~~~~~pi~i~~~~~l-L~~~ 219 (1490)
T TIGR01271 142 AIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAH-FVWIAPLQVILLMGL-IWEL 219 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHH
Confidence 34444557777888888889999999999999999999999999999999999776543 233333444443333 3333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q psy13234 710 STWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQ 789 (1192)
Q Consensus 710 ~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~ 789 (1192)
..+.+++.++++++++.+..++.++..+.+++.....++..+...|.++|+++||+|++|+.+.+++++..++..+...+
T Consensus 220 ~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~ 299 (1490)
T TIGR01271 220 LEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRK 299 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777788888888888888888888899999999999999999999999888887766555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcccccc
Q psy13234 790 NSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPL-NWFDALTRYLEASLVPLPKKTNA 868 (1192)
Q Consensus 790 ~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL-~~l~~~~~~l~~a~~~~erl~~~ 868 (1192)
......+...+..... .++..+.+++|. +..+ .+++.++.+++++..+..|+ ..+......+.++.++++|+.+.
T Consensus 300 ~~~~~~~~~~~~~~~~--~~~~~~~f~~y~-~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~f 375 (1490)
T TIGR01271 300 IAYLRYFYSSAFFFSG--FFVVFLSVVPYA-LIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDF 375 (1490)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322222222111 122223334454 3333 68888888888888888887 46777777777777777777665
Q ss_pred ccccccccccccccccccccccccccccccccccceeeecC---------------------------------CCCccc
Q psy13234 869 KECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK---------------------------------GKGTRD 915 (1192)
Q Consensus 869 ~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~---------------------------------~~~vL~ 915 (1192)
...++.. +.. . ...+..++ ++|++|+|+. .+++++
T Consensus 376 L~~~e~~------~~~--~--~~~~~~i~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 443 (1490)
T TIGR01271 376 LCKEEYK------TLE--Y--NLTTTEVE--MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLK 443 (1490)
T ss_pred hcCcccc------ccc--c--cCCCCceE--EecceEecCCccccccccccccccccccccccccccccccccccCccee
Confidence 2211100 000 0 00001233 4555555521 135788
Q ss_pred cccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHH
Q psy13234 916 AIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995 (1192)
Q Consensus 916 ~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIr 995 (1192)
++| +.+++|+. ++|+||+|||||||+++|+|+++|++|+|.+|| +|+||||+|++|++||+
T Consensus 444 ~i~---l~i~~G~~---~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~ 504 (1490)
T TIGR01271 444 NIS---FKLEKGQL---LAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIK 504 (1490)
T ss_pred eeE---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHH
Confidence 888 99998888 999999999999999999999999999999998 49999999999999999
Q ss_pred HHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCC
Q psy13234 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKL 1075 (1192)
Q Consensus 996 eNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~L 1075 (1192)
|||.||.+ .+ ++++.++++++++++++..+|+|++|.|||+|.+|
T Consensus 505 eNI~~g~~-~~----------------------------------~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~L 549 (1490)
T TIGR01271 505 DNIIFGLS-YD----------------------------------EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITL 549 (1490)
T ss_pred HHHHhccc-cc----------------------------------hHHHHHHHHHHhHHHHHHhccccccccccCcCCCc
Confidence 99999853 22 23445556888999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEc
Q psy13234 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1076 SGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~a-L~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~G 1154 (1192)
||||||||+||||++++|+|+||||||||||+++++.|.+. +.+..+++|+|+|||+++.+..||+|++|++|+|++.|
T Consensus 550 SgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g 629 (1490)
T TIGR01271 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYG 629 (1490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999874 67777899999999999999999999999999999999
Q ss_pred CHHHHHhcCcHHHHHHH
Q psy13234 1155 RHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1155 theELL~~~G~Ya~L~~ 1171 (1192)
+|+|+.+.++.|.+.+.
T Consensus 630 ~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 630 TFSELQAKRPDFSSLLL 646 (1490)
T ss_pred CHHHHHhcChHHHHHHh
Confidence 99999988788877774
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1e-54 Score=573.93 Aligned_cols=488 Identities=17% Similarity=0.286 Sum_probs=367.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc--cCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHL--SRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVI 700 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~--~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~divi 700 (1192)
..++...+.+...+.+.++...+...+|+|+++++..... +.++|++++.++.|++.+..+..... .++...+.+++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~-~l~~~Pl~li~ 376 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCM-YLWSSPMVLLL 376 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445555666777888899999999999999999988776 56899999999999999999875543 33333443333
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHH
Q psy13234 701 AIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAI 780 (1192)
Q Consensus 701 aiv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~ 780 (1192)
+++++ +....|.+++.++++++.+.+..++.++..+.+++..+..++..+...|.++|+++||.+++|+.+.+|+++..
T Consensus 377 ~~~lL-~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R 455 (1560)
T PTZ00243 377 SILLL-SRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKR 455 (1560)
T ss_pred HHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 33344556666666666666777788888888888888888888999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13234 781 QTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLV 860 (1192)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~ 860 (1192)
++..+...+......+..++......+ +..+.+++|. +.++.+|++.++..++++..+..|+..+......+.++.+
T Consensus 456 ~~El~~l~~~~~~~~~~~~~~~~~p~l--~~~~~f~~y~-~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~v 532 (1560)
T PTZ00243 456 ARELRYLRDVQLARVATSFVNNATPTL--MIAVVFTVYY-LLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLV 532 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555444444444333322222 2222345555 6688999999999999999999999988888877777777
Q ss_pred CCccccccccccccc-----ccccc--------cccc-----c--------ccccc------------------------
Q psy13234 861 PLPKKTNAKECRTIS-----CICHL--------TKAV-----T--------RIVLK------------------------ 890 (1192)
Q Consensus 861 ~~erl~~~~~~~~~~-----~~~~v--------~~~~-----~--------~i~l~------------------------ 890 (1192)
+++|+.+..+.++.. ..... .... . +...+
T Consensus 533 S~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (1560)
T PTZ00243 533 SIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRP 612 (1560)
T ss_pred HHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccc
Confidence 766665542111000 00000 0000 0 00000
Q ss_pred ---ccccccccccccceeeec---------------------------------------CCCCccccccccceeecCCc
Q psy13234 891 ---RIENKIEENMEEDQFGFR---------------------------------------KGKGTRDAIGCLRMIALESQ 928 (1192)
Q Consensus 891 ---~~~g~I~~~fenVsFsY~---------------------------------------~~~~vL~~ISvL~~~i~~Ge 928 (1192)
.....+. +++++|+++ .++++++++| +.+++|+
T Consensus 613 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is---l~i~~G~ 687 (1560)
T PTZ00243 613 TKRHPSPSVV--VEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVS---VSVPRGK 687 (1560)
T ss_pred cccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeE---EEECCCC
Confidence 0001122 334433321 1345788888 9999988
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHH
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEE 1008 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdE 1008 (1192)
. ++|+||+|||||||+++|+|+++|++|+|.++ ++|+||||+|++|++||+|||.++++. +
T Consensus 688 ~---~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~-- 748 (1560)
T PTZ00243 688 L---TVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEE-D-- 748 (1560)
T ss_pred E---EEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChh-h--
Confidence 8 99999999999999999999999999999863 579999999999999999999987531 2
Q ss_pred HHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q psy13234 1009 EVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIART 1088 (1192)
Q Consensus 1009 eV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARA 1088 (1192)
++++.++++.+++++.+..+|+|++|.+||+|.+|||||||||+||||
T Consensus 749 --------------------------------~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARA 796 (1560)
T PTZ00243 749 --------------------------------AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARA 796 (1560)
T ss_pred --------------------------------HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHH
Confidence 233445568899999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHH
Q psy13234 1089 LLKAPQIVLLDEATSALDTKTERNIQS-ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYA 1167 (1192)
Q Consensus 1089 LLrdP~ILLLDEATSALD~eTE~~Iq~-aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya 1167 (1192)
++++|+|+|||||||+||+++++.+.+ .+....+++|+|+|||+++.+..||+|++|++|++++.|+|+|+++. +.|.
T Consensus 797 l~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~ 875 (1560)
T PTZ00243 797 VYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT-SLYA 875 (1560)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC-hHHH
Confidence 999999999999999999999988865 44555578999999999999999999999999999999999999875 5688
Q ss_pred HHHHH
Q psy13234 1168 SMWIQ 1172 (1192)
Q Consensus 1168 ~L~~~ 1172 (1192)
++...
T Consensus 876 ~~~~~ 880 (1560)
T PTZ00243 876 TLAAE 880 (1560)
T ss_pred HHHHh
Confidence 88765
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.1e-51 Score=454.35 Aligned_cols=236 Identities=25% Similarity=0.427 Sum_probs=217.4
Q ss_pred ccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh
Q psy13234 895 KIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~ 973 (1192)
+++ ++|++++|+. ++++++++| +.+.+|+. ++|+|+||||||||+++|+|+++ ++|+|.+||.|+..++.
T Consensus 2 ~i~--~~nls~~~~~~~~~~l~~is---l~I~~Ge~---~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~ 72 (275)
T cd03289 2 QMT--VKDLTAKYTEGGNAVLENIS---FSISPGQR---VGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPL 72 (275)
T ss_pred eEE--EEEEEEEeCCCCCcceeceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCH
Confidence 355 9999999974 567899999 99999999 99999999999999999999998 78999999999999999
Q ss_pred HhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
.++|+.|+||||+|.+|++|+++|+.+..+ .+ +++++++++.+++
T Consensus 73 ~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~-~~----------------------------------~~~~~~~l~~~gL 117 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSGTFRKNLDPYGK-WS----------------------------------DEEIWKVAEEVGL 117 (275)
T ss_pred HHHhhhEEEECCCcccchhhHHHHhhhccC-CC----------------------------------HHHHHHHHHHcCC
Confidence 999999999999999999999999963221 23 3445555599999
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecCh
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 1133 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRL 1133 (1192)
++++.++|+||||.++|+|.+||||||||++||||++++|+|+|||||||+||+++++.+++.|++..+++|+|+||||+
T Consensus 118 ~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~ 197 (275)
T cd03289 118 KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI 197 (275)
T ss_pred HHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred hHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1134 STIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1134 STI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
+++..||+|++|++|+++|.|+|++|+++++.|+++.....
T Consensus 198 ~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 198 EAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred HHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 99999999999999999999999999998888888886554
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-47 Score=429.97 Aligned_cols=226 Identities=28% Similarity=0.418 Sum_probs=197.6
Q ss_pred cccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCee
Q psy13234 894 NKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQN 967 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~D 967 (1192)
+.++ ++|++++|+. .+++++++| +.+.+|+. +||+||||||||||+++|+|+++ |++|+|.+||+|
T Consensus 79 ~~i~--~~nls~~y~~~~~~~L~~is---~~I~~Ge~---v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~ 150 (329)
T PRK14257 79 NVFE--IRNFNFWYMNRTKHVLHDLN---LDIKRNKV---TAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN 150 (329)
T ss_pred ceEE--EEeeEEEecCCCceeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 4566 9999999974 457899999 99999998 99999999999999999999997 579999999999
Q ss_pred cC--CCChHhhcccEEEEcCCCccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHH
Q psy13234 968 IK--TVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE 1043 (1192)
Q Consensus 968 I~--~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdee 1043 (1192)
++ +.+..++|+.++||||+|++|++||+|||.|+.. ..++++..+ +.
T Consensus 151 i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~-----------------------------~~ 201 (329)
T PRK14257 151 TRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE-----------------------------KI 201 (329)
T ss_pred ccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHH-----------------------------HH
Confidence 97 4556789999999999999999999999998642 122332211 22
Q ss_pred HHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC
Q psy13234 1044 VKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS 1123 (1192)
Q Consensus 1044 I~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g 1123 (1192)
+.++++.+++ ++++++.++++|.+||||||||+|||||++++|+|||||||||+||+++.+.+++.|+++.++
T Consensus 202 ~~~~l~~~~L-------~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~ 274 (329)
T PRK14257 202 VEKSLKSAAL-------WDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK 274 (329)
T ss_pred HHHHHHHcCC-------cchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC
Confidence 4555677765 345678899999999999999999999999999999999999999999999999999999889
Q ss_pred ceEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1124 RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1124 rTvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+|+|+||||++++.+ ||+|+||++|+|+|.|+++++....
T Consensus 275 ~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 275 YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999988 9999999999999999999998653
No 49
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5e-46 Score=403.50 Aligned_cols=232 Identities=46% Similarity=0.732 Sum_probs=213.0
Q ss_pred cccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|+++.|+. ++++++++| +++.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+
T Consensus 3 ~~~l~~~~~~~~~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNIS---LRIKPGEV---VGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred EEEEEEecCCCCccceeceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 7889999964 457899999 99999988 9999999999999999999999999999999999999888888999
Q ss_pred cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
+|+|+||++.+|+.|++|||.++.+..+.+++.+++ +..++++.+.
T Consensus 77 ~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~l~ 122 (237)
T cd03252 77 QVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAA----------------------------------KLAGAHDFIS 122 (237)
T ss_pred cEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHH----------------------------------HHcCcHHHHH
Confidence 999999999999999999998865433344444433 7788899999
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~ 1138 (1192)
.+|.|+++.....+.+||||||||++||||++++|+++|||||||+||.++.+.+.+.|++..+++|+|++||+++.+..
T Consensus 123 ~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 123 ELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred hCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred cCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1139 ADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1139 aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
||+|++|++|++++.|++++++++.+.|+.+++
T Consensus 203 ~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 203 ADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred CCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 999999999999999999999999999988775
No 50
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-45 Score=395.59 Aligned_cols=233 Identities=61% Similarity=0.960 Sum_probs=214.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.+++++++++ +.+.+|+. ++|+||+|||||||+++|.|+++|++|+|.+||.++++.+...+|+.
T Consensus 3 ~~~l~~~~~~~~~~l~~i~---~~i~~Ge~---~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~ 76 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVS---FTIPAGKK---VAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76 (236)
T ss_pred EEEEEEEeCCCCceeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 7889999975567899999 99999988 99999999999999999999999999999999999999998899999
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
++|+||++.+|++|++||+.++.++.+++++.+ +++.+++.+.+..
T Consensus 77 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~----------------------------------~~~~~~l~~~~~~ 122 (236)
T cd03253 77 IGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIE----------------------------------AAKAAQIHDKIMR 122 (236)
T ss_pred EEEECCCChhhcchHHHHHhhcCCCCCHHHHHH----------------------------------HHHHcCcHHHHHh
Confidence 999999999999999999998754444444433 3488889999999
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhc
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHA 1139 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~a 1139 (1192)
+|.|++|.+..+...||||||||++||||++++|+++||||||++||+++.+.+.+.|.+..+++|+|++||+++.+..|
T Consensus 123 l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~ 202 (236)
T cd03253 123 FPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNA 202 (236)
T ss_pred ccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999887789999999999999999
Q ss_pred CEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHH
Q psy13234 1140 DEILVMHAGEIVERGRHEELLERNGVYASMWIQ 1172 (1192)
Q Consensus 1140 DrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~ 1172 (1192)
|++++|++|++++.|+.+++.++.+.|+.+|..
T Consensus 203 d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd03253 203 DKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235 (236)
T ss_pred CEEEEEECCEEEeeCCHHHHhhcccHHHHHHhc
Confidence 999999999999999999999888888888764
No 51
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.7e-45 Score=400.53 Aligned_cols=237 Identities=31% Similarity=0.501 Sum_probs=215.4
Q ss_pred cccccccccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC
Q psy13234 894 NKIEENMEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS 972 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~ 972 (1192)
+.++ ++|++++|+.. +.+++++| +.+.+|+. +||+|+||||||||+++|+|+++|++|+|.+||+++.+.+
T Consensus 18 ~~i~--~~~l~~~~~~~~~~il~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIK--IHDLCVRYENNLKPVLKHVK---AYIKPGQK---VGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEE--EEEEEEEeCCCCCcceeEEE---EEEcCCCE---EEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC
Confidence 5677 99999999753 57899999 99999999 9999999999999999999999999999999999999999
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
..++|+.|+|+||++.+|++|++||+.+.+. .. +++++++++.++
T Consensus 90 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~----------------------------------~~~~~~~l~~~~ 134 (257)
T cd03288 90 LHTLRSRLSIILQDPILFSGSIRFNLDPECK-CT----------------------------------DDRLWEALEIAQ 134 (257)
T ss_pred HHHHhhhEEEECCCCcccccHHHHhcCcCCC-CC----------------------------------HHHHHHHHHHhC
Confidence 9999999999999999999999999964321 12 233444558889
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecC
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHR 1132 (1192)
+++.+..+|.|++|.+++.+.+||||||||++||||++++|+++||||||++||+++++.+.+.+++..+++|+|++||+
T Consensus 135 l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~ 214 (257)
T cd03288 135 LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHR 214 (257)
T ss_pred cHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988788999999999
Q ss_pred hhHHHhcCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHHHHHh
Q psy13234 1133 LSTIIHADEILVMHAGEIVERGRHEELLER-NGVYASMWIQQ 1173 (1192)
Q Consensus 1133 LSTI~~aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L~~~Q 1173 (1192)
++.+..||+|++|++|++++.|+++++.+. ++.|+++|..|
T Consensus 215 ~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 256 (257)
T cd03288 215 VSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTD 256 (257)
T ss_pred hHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhcc
Confidence 999999999999999999999999999875 57799888654
No 52
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-45 Score=383.54 Aligned_cols=216 Identities=31% Similarity=0.495 Sum_probs=191.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC-CCChHhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK-TVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~-~i~~~sLR~ 978 (1192)
++|++.+|. +..+|++|| +.+.+|+. ++|+||||||||||+|+|.|+-+|++|+|.+||.++. +.+...+|+
T Consensus 5 i~~l~K~fg-~~~VLkgi~---l~v~~Gev---v~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 5 IKNLSKSFG-DKEVLKGIS---LSVEKGEV---VVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred EEeeeEEeC-CeEEecCcc---eeEcCCCE---EEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHH
Confidence 889999996 457999999 99999999 9999999999999999999999999999999998773 347899999
Q ss_pred cEEEEcCCCcccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDTVLFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp~LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
++|+|+|...||+ -|+.||+.++-. ..+.+|-.+-| .+.|+++|+.
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A------------------------------~~lL~~VGL~ 127 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKA------------------------------LELLEKVGLA 127 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHH------------------------------HHHHHHcCch
Confidence 9999999999998 699999998732 23444444433 4567999999
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRL 1133 (1192)
|.-...| .+||||||||+||||||.-+|+++++|||||||||+.-.++.+.++++.+ |.|.|+|||.+
T Consensus 128 ~ka~~yP-----------~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 128 DKADAYP-----------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred hhhhhCc-----------cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 9888877 36999999999999999999999999999999999999999999998865 58999999999
Q ss_pred hHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1134 STIIH-ADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1134 STI~~-aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
...++ ||||+.|++|+|+|.|+++++..+.
T Consensus 197 ~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 197 GFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 99875 8999999999999999999998764
No 53
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-44 Score=389.13 Aligned_cols=224 Identities=49% Similarity=0.755 Sum_probs=205.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.++++++++| +.+++|+. ++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++
T Consensus 5 ~~~l~~~~~~~~~~l~~is---l~i~~G~~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 5 FENVNFSYDEKKPVLKDIN---FSIKPGET---VAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred EEEEEEecCCCCccccceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 8899999975557899999 99999999 99999999999999999999999999999999999998888889999
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
++|+||++.+|++|++||+.++.++.+++++. ++++..++.+.+.+
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~l~~~~~~ 124 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVI----------------------------------EAAKEAGAHDFIMK 124 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHH----------------------------------HHHHHhChHHHHHh
Confidence 99999999999999999998875433333333 34488899999999
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhc
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHA 1139 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~a 1139 (1192)
+|+|+++.++.....||||||||++||||++++|+++||||||++||..+.+.+.+.|++..+++|+|+|||+++.+..|
T Consensus 125 ~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 204 (229)
T cd03254 125 LPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA 204 (229)
T ss_pred CcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999987789999999999999999
Q ss_pred CEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1140 DEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1140 DrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|+|++|++|++++.|+.+++.++.
T Consensus 205 d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 205 DKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred CEEEEEeCCeEEEeCCHHHHHhhC
Confidence 999999999999999999987654
No 54
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-44 Score=389.48 Aligned_cols=230 Identities=51% Similarity=0.815 Sum_probs=209.5
Q ss_pred cccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|++++|+.. ++++++++ +.+.+|+. ++|+||+|||||||+++|.|+++|++|+|.+||.++.+.+.+.+|+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDIS---LDIPAGET---VALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred EEEEEEEeCCCCccceeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 78899999653 36899999 99999998 9999999999999999999999999999999999999888888999
Q ss_pred cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
+|+|+||++.+|+.|++||+.++..+.+.+++.++ ++..++++.+.
T Consensus 77 ~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~ 122 (234)
T cd03251 77 QIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEA----------------------------------ARAANAHEFIM 122 (234)
T ss_pred hEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHH----------------------------------HHHcCcHHHHH
Confidence 99999999999999999999987543333333333 37788899999
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~ 1138 (1192)
.+|.|+++.++.....||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+++|+|++||+++.+..
T Consensus 123 ~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 123 ELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred hcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred cCEEEEEeCCEEEEEcCHHHHHhcCcHHHHH
Q psy13234 1139 ADEILVMHAGEIVERGRHEELLERNGVYASM 1169 (1192)
Q Consensus 1139 aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L 1169 (1192)
||+|++|++|++++.|+.+++.+..+.|+.+
T Consensus 203 ~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 203 ADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred CCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 9999999999999999999999887777643
No 55
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.3e-43 Score=384.84 Aligned_cols=232 Identities=48% Similarity=0.776 Sum_probs=209.1
Q ss_pred cccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhc
Q psy13234 900 MEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR 977 (1192)
++|+++.|+. ++++++++| +.+++|+. ++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+....|
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~---~~i~~Ge~---~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLS---LTIPPGKT---VALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred EEEEEEecCCCCCccceeceE---EEecCCCE---EEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHH
Confidence 7889999964 346899999 99999988 999999999999999999999999999999999999888888888
Q ss_pred ccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 978 QAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
++++|+||++.+|+.|++||+.++.+..+.+++ .+.++..++.+.+
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~ 122 (238)
T cd03249 77 SQIGLVSQEPVLFDGTIAENIRYGKPDATDEEV----------------------------------EEAAKKANIHDFI 122 (238)
T ss_pred hhEEEECCchhhhhhhHHHHhhccCCCCCHHHH----------------------------------HHHHHHcChHHHH
Confidence 899999999999999999999886543333333 3334777888999
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~ 1137 (1192)
..+|+|+++..+....+||||||||++||||++.+|+++||||||++||+++.+.+.+.|++..+++|+|++||+++.+.
T Consensus 123 ~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 123 MSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred HhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998877899999999999999
Q ss_pred hcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1138 HADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1138 ~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
.||+|++|++|++++.|+.+++.+..+.+++.+.
T Consensus 203 ~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 236 (238)
T cd03249 203 NADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVK 236 (238)
T ss_pred hCCEEEEEECCEEEEeCCHHHHhhcChhHHHHhh
Confidence 9999999999999999999999887777776654
No 56
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-43 Score=380.41 Aligned_cols=215 Identities=34% Similarity=0.535 Sum_probs=198.2
Q ss_pred cccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|++++|+. ++++++++| +.+++|+. +||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNIS---FSIKPGEK---VGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred EEEEEEecCCCCcccccceE---EEECCCCE---EEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence 8899999975 357999999 99999988 9999999999999999999999999999999999999999989999
Q ss_pred cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
+++|+||++.+|++|++|||.+.+. .+++++ .++++..++.+.+.
T Consensus 79 ~i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~----------------------------------~~~~~~~~l~~~~~ 123 (221)
T cd03244 79 RISIIPQDPVLFSGTIRSNLDPFGE-YSDEEL----------------------------------WQALERVGLKEFVE 123 (221)
T ss_pred hEEEECCCCccccchHHHHhCcCCC-CCHHHH----------------------------------HHHHHHhCcHHHHH
Confidence 9999999999999999999976432 233344 44448889999999
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~ 1138 (1192)
++|.|++|.+++.+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..
T Consensus 124 ~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 124 SLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred hcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999998778999999999999999
Q ss_pred cCEEEEEeCCEEEEEcC
Q psy13234 1139 ADEILVMHAGEIVERGR 1155 (1192)
Q Consensus 1139 aDrIlVLe~G~IvE~Gt 1155 (1192)
||+|++|++|++++.|+
T Consensus 204 ~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 204 SDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEEECCeEEecCC
Confidence 99999999999999876
No 57
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-44 Score=374.37 Aligned_cols=222 Identities=28% Similarity=0.432 Sum_probs=196.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCC-----ceEEECCeecCC--CC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNIKT--VS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~s-----GsI~IDG~DI~~--i~ 972 (1192)
.+|+++.|. ++.++++|+ +.+++++. +|++|||||||||++|.+-|+.|..+ |+|.+||+||.+ ++
T Consensus 10 ~~~l~~yYg-~~~aL~~i~---l~i~~~~V---TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 10 VRDLNLYYG-DKHALKDIN---LDIPKNKV---TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ecceeEEEC-chhhhccCc---eeccCCce---EEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 889999997 567899999 99999999 99999999999999999999999987 999999999987 47
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
...+|++||.|.|.|--|+.||+||++||-.- -++.+ ..=||.++++|+.|.
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~------------~g~~~----------------~~ldeiVe~sLk~Aa 134 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRL------------HGIKD----------------KELDEIVESSLKKAA 134 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHh------------hccch----------------HHHHHHHHHHHHHhH
Confidence 99999999999999999999999999998310 00100 112566788899999
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecC
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHR 1132 (1192)
++|.+.. . +.+.+..|||||+||+||||||.-+|+||+|||||||||+.+..+|.+.|.++.++-|+|+|||.
T Consensus 135 LWdEVKD---r----L~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHn 207 (253)
T COG1117 135 LWDEVKD---R----LHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHN 207 (253)
T ss_pred hHHHhHH---H----hhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCC
Confidence 9998753 2 34668889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1133 LSTI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1133 LSTI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+... +-+|+..++.+|+++|+|+-+++..+.
T Consensus 208 mqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P 239 (253)
T COG1117 208 MQQAARVSDYTAFFYLGELVEFGPTDKIFTNP 239 (253)
T ss_pred HHHHHHHhHhhhhhcccEEEEEcCHHhhhcCc
Confidence 9865 568999999999999999999988653
No 58
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=388.71 Aligned_cols=217 Identities=31% Similarity=0.499 Sum_probs=188.3
Q ss_pred cccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC---
Q psy13234 900 MEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--- 972 (1192)
Q Consensus 900 fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~--- 972 (1192)
+++|++.|+.. ...++++| +.+++|+. .||||+||+|||||+|++-++-.|++|+|.+||+|+..++
T Consensus 4 l~~vsK~~~~~~~~~~~al~~vs---L~I~~GeI---~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 4 LENVSKTFGQTGTGTVTALDDVS---LEIPKGEI---FGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred EEeeeeeeccCCCCceeeeccce---EEEcCCcE---EEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHH
Confidence 88899988762 45788898 99999888 9999999999999999999999999999999999988877
Q ss_pred hHhhcccEEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
+..+|++||+|+|++-|++ .|+.+|++|.-. ..+.+|+ +.++.+.|+
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei------------------------------~~RV~elLe 127 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI------------------------------KQRVAELLE 127 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHH------------------------------HHHHHHHHH
Confidence 5567889999999999999 899999997421 1223332 345666778
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTI 1127 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvI 1127 (1192)
.+|+.|.-.+-| .+||||||||+||||||..+|+||+.||||||||++|.+.|.+.|++.- -|-|++
T Consensus 128 lVgL~dk~~~yP-----------~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIv 196 (339)
T COG1135 128 LVGLSDKADRYP-----------AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV 196 (339)
T ss_pred HcCChhhhccCc-----------hhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEE
Confidence 888887765544 5899999999999999999999999999999999999999999998654 368999
Q ss_pred EEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1128 IVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1128 vIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+|||-++.+++ |||+.||++|+++|.|+-.|+..+.
T Consensus 197 lITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 197 LITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred EEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 99999999976 9999999999999999999998754
No 59
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=7.5e-43 Score=374.29 Aligned_cols=215 Identities=36% Similarity=0.610 Sum_probs=195.0
Q ss_pred cccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|++++|+. ++++++++| +.+.+|+. ++|+||||||||||+++|.|+.+|++|+|.+||.++...+....|+
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~---~~i~~G~~---~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVS---LTIRAGEK---VAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEEEcCCCCcccccceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 8899999965 356899999 99999998 9999999999999999999999999999999999998888878889
Q ss_pred cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
.++|+||++.+|+.|++||+.++.+..++++ +.++++..++.+.+.
T Consensus 79 ~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~l~~~~l~~~~~ 124 (220)
T cd03245 79 NIGYVPQDVTLFYGTLRDNITLGAPLADDER----------------------------------ILRAAELAGVTDFVN 124 (220)
T ss_pred hEEEeCCCCccccchHHHHhhcCCCCCCHHH----------------------------------HHHHHHHcCcHHHHH
Confidence 9999999999999999999987643223333 334458889999999
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~ 1138 (1192)
++|.|++|.+.+....||||||||++||||++.+|+++||||||++||.++.+.+.+.|++..+++|+|++||+++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 204 (220)
T cd03245 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDL 204 (220)
T ss_pred hccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998777899999999999899
Q ss_pred cCEEEEEeCCEEEEEc
Q psy13234 1139 ADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1139 aDrIlVLe~G~IvE~G 1154 (1192)
||+|++|++|++++.|
T Consensus 205 ~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 205 VDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEEeCCeEeecC
Confidence 9999999999998765
No 60
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-42 Score=376.71 Aligned_cols=220 Identities=30% Similarity=0.454 Sum_probs=186.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh---Hhh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~---~sL 976 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++...+. ..+
T Consensus 3 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (235)
T cd03261 3 LRGLTKSFGG-RTVLKGVD---LDVRRGEI---LAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75 (235)
T ss_pred EEEEEEEECC-EEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHH
Confidence 7889999964 56899999 99999999 99999999999999999999999999999999999988764 578
Q ss_pred cccEEEEcCCCccccc-cHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 977 RQAIGVVPQDTVLFNN-SIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnG-TIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
|+.|+||||++.+|++ |++||+.++.. ..++++. ++++.++++..+
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~ 125 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEI------------------------------REIVLEKLEAVG 125 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHH------------------------------HHHHHHHHHHcC
Confidence 8999999999999986 99999987521 1122111 234455667777
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 1130 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIA 1130 (1192)
+.+...+ . ...||||||||++||||++++|+|+||||||++||+++.+.+.+.|++..+ ++|+|+||
T Consensus 126 l~~~~~~-------~----~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vs 194 (235)
T cd03261 126 LRGAEDL-------Y----PAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT 194 (235)
T ss_pred CchhhcC-------C----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 6554332 2 247999999999999999999999999999999999999999999998754 78999999
Q ss_pred cChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcCcHHH
Q psy13234 1131 HRLSTIIH-ADEILVMHAGEIVERGRHEELLERNGVYA 1167 (1192)
Q Consensus 1131 HRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~G~Ya 1167 (1192)
|+++.+.. ||+|++|++|++++.|+++++......|.
T Consensus 195 H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 232 (235)
T cd03261 195 HDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPLV 232 (235)
T ss_pred cCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCCChhh
Confidence 99998865 99999999999999999999886655443
No 61
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.5e-42 Score=397.16 Aligned_cols=226 Identities=28% Similarity=0.425 Sum_probs=191.7
Q ss_pred cccceeeecC---CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-
Q psy13234 900 MEEDQFGFRK---GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS- 975 (1192)
Q Consensus 900 fenVsFsY~~---~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s- 975 (1192)
++|++++|+. ..++++++| +.+.+|+. ++|+||||||||||+++|.|+.+|++|+|.+||+|+.+++..+
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vs---l~i~~Gei---~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVS---LHVPAGQI---YGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 8899999963 246899999 99999998 9999999999999999999999999999999999999887654
Q ss_pred --hcccEEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 976 --LRQAIGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 976 --LR~~Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
.|++||||||++.+|+ .|++||+.++.. ..+.++ .++++.++++.
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~------------------------------~~~~v~e~l~~ 127 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE------------------------------IKRKVTELLAL 127 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHH
Confidence 5889999999999996 799999987531 112111 13445667788
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEE
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTII 1128 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIv 1128 (1192)
.++.+...+. ...||||||||++|||||..+|++|+||||||+||++|.+.+.+.|++..+ +.|+|+
T Consensus 128 vgL~~~~~~~-----------~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiil 196 (343)
T TIGR02314 128 VGLGDKHDSY-----------PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196 (343)
T ss_pred cCCchhhhCC-----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8887665443 357999999999999999999999999999999999999999999998754 789999
Q ss_pred EecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc--CcHHHHHHHH
Q psy13234 1129 VAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER--NGVYASMWIQ 1172 (1192)
Q Consensus 1129 IAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~--~G~Ya~L~~~ 1172 (1192)
|||+++.+.. ||+|++|++|+|+|.|++++++.. +..++++...
T Consensus 197 iTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~~~~~~~ 243 (343)
T TIGR02314 197 ITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRS 243 (343)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHHHHHHhh
Confidence 9999999865 999999999999999999999864 2344555543
No 62
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=395.31 Aligned_cols=219 Identities=25% Similarity=0.397 Sum_probs=183.9
Q ss_pred cccccccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 896 IEENMEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 896 I~~~fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
++ ++|++|+|+.. +++++++| +.+.+|+. +||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 22 l~--~~nl~~~y~~~~~~~~~~L~~vs---l~i~~Ge~---~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~ 93 (320)
T PRK13631 22 LR--VKNLYCVFDEKQENELVALNNIS---YTFEKNKI---YFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDK 93 (320)
T ss_pred EE--EEeEEEEeCCCCcccccceeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccc
Confidence 55 99999999742 46899999 99999988 999999999999999999999999999999999998653
Q ss_pred ----------------ChHhhcccEEEEcCCC--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCc
Q psy13234 972 ----------------SQASLRQAIGVVPQDT--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYD 1031 (1192)
Q Consensus 972 ----------------~~~sLR~~Ig~VPQDp--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~ 1031 (1192)
+...+|++|+||+|+| .+|++|++|||.++.. +.++++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~------------------- 154 (320)
T PRK13631 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK------------------- 154 (320)
T ss_pred cccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-------------------
Confidence 4567899999999998 7999999999998732 223322211
Q ss_pred hhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q psy13234 1032 TQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111 (1192)
Q Consensus 1032 ~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~ 1111 (1192)
++.++++..++. +...++.+.+||||||||++|||||+++|+|||||||||+||+.+++
T Consensus 155 -----------~~~~~l~~~gL~----------~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~ 213 (320)
T PRK13631 155 -----------LAKFYLNKMGLD----------DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEH 213 (320)
T ss_pred -----------HHHHHHHHcCCC----------hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHH
Confidence 122333444432 12346677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCceEEEEecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1112 NIQSALNRVC-ASRTTIIVAHRLSTI-IHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1112 ~Iq~aL~~l~-~grTvIvIAHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.+.+.|+++. +++|+|+|||+++.+ ..||+|++|++|++++.|+|+|+.+.
T Consensus 214 ~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 214 EMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred HHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999998764 479999999999987 56999999999999999999988654
No 63
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=371.71 Aligned_cols=216 Identities=31% Similarity=0.511 Sum_probs=189.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
|+||++.|. ++.+.+++| +++.+|+. +.++|||||||||++|+|-|+.+|++|+|+|||.|+++++...||++
T Consensus 4 ~~nvsk~y~-~~~av~~v~---l~I~~gef---~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~ 76 (309)
T COG1125 4 FENVSKRYG-NKKAVDDVN---LTIEEGEF---LVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76 (309)
T ss_pred eeeeehhcC-Cceeeeeee---EEecCCeE---EEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHh
Confidence 899999997 566888888 99998888 99999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccc-ccHHHHHhccc--cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH--
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYAR--INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH-- 1054 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~--~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh-- 1054 (1192)
||||=|..-||+ -||.|||++-- ...+.+++ ++++.+.++..++.
T Consensus 77 IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i------------------------------~~r~~ELl~lvgL~p~ 126 (309)
T COG1125 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERI------------------------------KKRADELLDLVGLDPS 126 (309)
T ss_pred hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHH------------------------------HHHHHHHHHHhCCCHH
Confidence 999999999998 69999998531 12333333 34455666777775
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecC
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 1132 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHR 1132 (1192)
++..+.| ..|||||+|||++||||..+|+|+++|||.||||+.|.+++|+-+.++.+ ++|+|+|||+
T Consensus 127 ~~~~RyP-----------~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD 195 (309)
T COG1125 127 EYADRYP-----------HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195 (309)
T ss_pred HHhhcCc-----------hhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 3555555 46999999999999999999999999999999999999999999877654 5999999999
Q ss_pred hhH-HHhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1133 LST-IIHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1133 LST-I~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+.. ++-+|||.+|++|+|+++|+|+|++++.
T Consensus 196 idEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 196 IDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 975 6789999999999999999999999763
No 64
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.4e-42 Score=371.04 Aligned_cols=215 Identities=40% Similarity=0.626 Sum_probs=193.1
Q ss_pred cccccccccceeeecCC--CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 894 NKIEENMEEDQFGFRKG--KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~--~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
+.++ +++++++|+.. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 10 ~~l~--~~~l~~~~~~~~~~~~l~~is---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 81 (226)
T cd03248 10 GIVK--FQNVTFAYPTRPDTLVLQDVS---FTLHPGEV---TALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY 81 (226)
T ss_pred ceEE--EEEEEEEeCCCCCCccccceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHc
Confidence 5566 89999999752 46899999 99999998 999999999999999999999999999999999999888
Q ss_pred ChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 972 SQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
+....|++++|+||++.+|++|++||+.++....+.+++.+. .+..
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~----------------------------------~~~~ 127 (226)
T cd03248 82 EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEA----------------------------------AQKA 127 (226)
T ss_pred CHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHH----------------------------------HHHc
Confidence 888889999999999999999999999876433333332222 2567
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 1131 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAH 1131 (1192)
++++.+..+|.|+++.+.+...+||||||||++||||++++|+++||||||++||+++.+.+.+.|+++.+++|+|+|||
T Consensus 128 ~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh 207 (226)
T cd03248 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207 (226)
T ss_pred CcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 78889999999999999999999999999999999999999999999999999999999999999999877899999999
Q ss_pred ChhHHHhcCEEEEEeCCEE
Q psy13234 1132 RLSTIIHADEILVMHAGEI 1150 (1192)
Q Consensus 1132 RLSTI~~aDrIlVLe~G~I 1150 (1192)
+++.+..||+|++|++|++
T Consensus 208 ~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 208 RLSTVERADQILVLDGGRI 226 (226)
T ss_pred CHHHHHhCCEEEEecCCcC
Confidence 9999999999999999974
No 65
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3e-42 Score=371.63 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=184.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCC-----CCCCceEEECCeecCCCC--
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY-----DVESGDIFIDNQNIKTVS-- 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRly-----dp~sGsI~IDG~DI~~i~-- 972 (1192)
++|++++|+. +++++++| +++.+|+. ++|+||||||||||+++|+|++ +|++|+|.+||+++.+.+
T Consensus 3 ~~~l~~~~~~-~~~l~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 3 LRDLNVYYGD-KHALKDIS---LDIPKGEI---TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred EEEEEEEcCC-ceeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH
Confidence 7889999964 46899999 99999988 9999999999999999999999 999999999999998877
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCC--CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~a--sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
...+|++|+|+||++.+|+.|++||+.++.... .++ +..++++.++++.
T Consensus 76 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~ 126 (227)
T cd03260 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLK-----------------------------EELDERVEEALRK 126 (227)
T ss_pred HHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcH-----------------------------HHHHHHHHHHHHH
Confidence 567889999999999999999999998753110 000 0113455667788
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
.++.+...+.++ +.+||||||||++||||++++|+++|||||||+||+++.+.+.+.|++..+++|+|+||
T Consensus 127 ~~l~~~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 197 (227)
T cd03260 127 AALWDEVKDRLH---------ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVT 197 (227)
T ss_pred cCCChHHhccCC---------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEe
Confidence 887665544322 46899999999999999999999999999999999999999999999887669999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHH
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEEL 1159 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheEL 1159 (1192)
|+++.+. .||+|++|++|++++.|+++|+
T Consensus 198 H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 198 HNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred ccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999876 5999999999999999998764
No 66
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-42 Score=372.93 Aligned_cols=223 Identities=30% Similarity=0.424 Sum_probs=189.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCeecCCCChHhh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD---VESGDIFIDNQNIKTVSQASL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd---p~sGsI~IDG~DI~~i~~~sL 976 (1192)
++|+++.|+. +++++++| +++.+|+. ++|+||||||||||+++|+|+++ |++|+|.+||+|+.+.+....
T Consensus 5 ~~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 5 TTNLNLFYGK-KQALFDIN---MQIEQNKI---TALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred eeeeEEEECC-EeeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 7899999964 57899999 99999988 99999999999999999999985 699999999999998888889
Q ss_pred cccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 977 RQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
|+.|+|+||++.+|+.|++||+.++..-.. ..++ ....++++.++++..++++.
T Consensus 78 ~~~i~~~~q~~~l~~~tv~eni~~~~~~~~-------------------~~~~-------~~~~~~~~~~~l~~~~l~~~ 131 (246)
T PRK14269 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHG-------------------MIKN-------KDEEEALVVDCLQKVGLFEE 131 (246)
T ss_pred hhhEEEEecCCccccccHHHHhhhHHhhcC-------------------cccC-------hHHHHHHHHHHHHHcCCChh
Confidence 999999999999999999999987521000 0000 00123456667788887655
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI 1136 (1192)
+.. ...+.+.+||||||||++||||++++|++++|||||++||.++.+.+.+.|++..+++|+|+|||+++.+
T Consensus 132 ~~~-------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~ 204 (246)
T PRK14269 132 VKD-------KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQG 204 (246)
T ss_pred hhH-------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 432 2345667899999999999999999999999999999999999999999999987889999999999987
Q ss_pred H-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1137 I-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
. .||+|++|++|++++.|+++|+.+.
T Consensus 205 ~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 205 KRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 5 6999999999999999999999864
No 67
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.4e-41 Score=368.24 Aligned_cols=227 Identities=21% Similarity=0.354 Sum_probs=181.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh-cc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL-R~ 978 (1192)
++|++++|+. +++++++| +++.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++.+.+.... |+
T Consensus 3 ~~~l~~~~~~-~~~l~~vs---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (236)
T cd03219 3 VRGLTKRFGG-LVALDDVS---FSVRPGEI---HGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75 (236)
T ss_pred eeeeEEEECC-EEEecCce---EEecCCcE---EEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhc
Confidence 7889999964 56899999 99999888 99999999999999999999999999999999999998886654 57
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
.++|+||++.+|++ |++|||.++........+.+.. ... +. ...++++.++++..++
T Consensus 76 ~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~------------~~~-~~-----~~~~~~~~~~l~~~~l---- 133 (236)
T cd03219 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLAR------------ARR-EE-----REARERAEELLERVGL---- 133 (236)
T ss_pred CEEEEecccccccCCCHHHHHHHHHhhcccccccccc------------ccc-cH-----HHHHHHHHHHHHHcCc----
Confidence 89999999999997 9999998764211100000000 000 00 0012233444444443
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI 1136 (1192)
+.........||||||||++||||++.+|+++||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+
T Consensus 134 -------~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~ 206 (236)
T cd03219 134 -------ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVV 206 (236)
T ss_pred -------cchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 333344556899999999999999999999999999999999999999999998875 679999999999998
Q ss_pred Hh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1137 IH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1137 ~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.. ||+|++|++|++++.|+++++...
T Consensus 207 ~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 207 MSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 65 999999999999999999998653
No 68
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=376.90 Aligned_cols=217 Identities=29% Similarity=0.470 Sum_probs=189.5
Q ss_pred cccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhc
Q psy13234 900 MEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR 977 (1192)
++|++++|+. .+++++++| +.+.+|+. +||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVS---FHVKQGEW---LSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeE---EEEeCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 8899999974 245899999 99999998 999999999999999999999999999999999999988888899
Q ss_pred ccEEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 978 QAIGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 978 ~~Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
++++||||+| .+++.|++|||.++... .++++. ++++.++++..++
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~gL 130 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEM------------------------------KERVNEALELVGM 130 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHH------------------------------HHHHHHHHHHCCC
Confidence 9999999998 46778999999986321 122221 2345667788888
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEec
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 1131 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAH 1131 (1192)
.++..+.| .+||||||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||
T Consensus 131 ~~~~~~~~-----------~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH 199 (279)
T PRK13650 131 QDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH 199 (279)
T ss_pred HhHhhCCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 77665543 47999999999999999999999999999999999999999999998754 799999999
Q ss_pred ChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1132 RLSTIIHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1132 RLSTI~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+++.+..||+|++|++|++++.|+++++.+..
T Consensus 200 ~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 200 DLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred CHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 99999899999999999999999999987653
No 69
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-41 Score=368.00 Aligned_cols=224 Identities=28% Similarity=0.427 Sum_probs=184.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC---hHhh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~---~~sL 976 (1192)
++|++++|+.++++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||+++...+ ...+
T Consensus 3 ~~~l~~~~~~~~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (241)
T cd03256 3 VENLSKTYPNGKKALKDVS---LSINPGEF---VALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76 (241)
T ss_pred EeeEEEecCCccEEEecce---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHH
Confidence 7889999965357899999 99999998 9999999999999999999999999999999999998876 5678
Q ss_pred cccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 977 RQAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
|+.++|+||++.+|. .|++||+.++..... ...... . +.. .+..++++.++++..++.+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~---------~----~~~-----~~~~~~~~~~~l~~~~l~~ 136 (241)
T cd03256 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRR--STWRSL---------F----GLF-----PKEEKQRALAALERVGLLD 136 (241)
T ss_pred HhccEEEcccCcccccCcHHHHHHhhhcccc--hhhhhh---------c----ccC-----cHHHHHHHHHHHHHcCChh
Confidence 899999999999887 699999987532110 000000 0 000 0112345566667777654
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRL 1133 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRL 1133 (1192)
.. ......||||||||++||||++++|+|||||||||+||+++.+.+.+.|++.. .++|+|+|||++
T Consensus 137 ~~-----------~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~ 205 (241)
T cd03256 137 KA-----------YQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205 (241)
T ss_pred hh-----------CCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 32 33456899999999999999999999999999999999999999999999875 379999999999
Q ss_pred hHHH-hcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1134 STII-HADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1134 STI~-~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
+.+. .||+|++|++|++++.|+++++.
T Consensus 206 ~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 206 DLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9987 69999999999999999999874
No 70
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-41 Score=388.22 Aligned_cols=215 Identities=27% Similarity=0.451 Sum_probs=187.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.++.+++++| +.+.+|+. ++|+||||||||||+++|.|+.+|++|+|.+||+++.+++.. ++.
T Consensus 6 i~~l~~~~~~~~~~l~~vs---l~i~~Ge~---~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 77 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKGID---LDVADGEF---IVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRD 77 (356)
T ss_pred EEeEEEEeCCCCEEEeeee---EEEcCCCE---EEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 8899999954567899999 99999888 999999999999999999999999999999999999988764 478
Q ss_pred EEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
||||||++.+|+ .|++|||.|+.. ..+.++ .++++.++++..++.+.
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~gL~~~ 127 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE------------------------------IEERVAEAARILELEPL 127 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHH------------------------------HHHHHHHHHHHcCChhH
Confidence 999999999996 599999998732 111111 12445677788898887
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+.| .+||||||||+||||||+++|++|+||||||+||..+.+.+.+.|+++.+ +.|+|+|||+++
T Consensus 128 ~~~~~-----------~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 128 LDRKP-----------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred hhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 76665 37999999999999999999999999999999999999999999988754 689999999998
Q ss_pred HH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1135 TI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1135 TI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
.+ ..||+|++|++|++++.|+++|+..+.
T Consensus 197 ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 197 EAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 66 569999999999999999999998753
No 71
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=374.96 Aligned_cols=214 Identities=25% Similarity=0.435 Sum_probs=187.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.++++++++| +.+.+|+. +||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...++++
T Consensus 7 ~~~l~~~~~~~~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 7 VEDLHFRYKDGTKALKGLS---LSIPEGSK---TALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80 (274)
T ss_pred EEEEEEEeCCCCeeeeeEE---EEEcCCCE---EEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhh
Confidence 8999999975567899999 99999988 99999999999999999999999999999999999998888889999
Q ss_pred EEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 980 IGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 980 Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
|+||||+| .+|+.|++|||.++... .+.++ .++++.++++..++++
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~L~~ 130 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDE------------------------------VERRVEEALKAVRMWD 130 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHH------------------------------HHHHHHHHHHHCCCHH
Confidence 99999998 68899999999876321 11111 1345667778888887
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLS 1134 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLS 1134 (1192)
...+.|. .||||||||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++
T Consensus 131 ~~~~~~~-----------~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 131 FRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred HhcCChh-----------hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 7655542 799999999999999999999999999999999999999999998875 4799999999999
Q ss_pred HH-HhcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1135 TI-IHADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1135 TI-~~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
.+ ..||+|++|++|++++.|+++++.
T Consensus 200 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 200 LAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 98 469999999999999999987653
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.6e-41 Score=367.65 Aligned_cols=224 Identities=30% Similarity=0.443 Sum_probs=182.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh---Hhh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~---~sL 976 (1192)
++|++++|+.++++++++| +++.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++.+++. ..+
T Consensus 4 ~~~l~~~~~~~~~il~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNIN---LNINPGEF---VAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77 (243)
T ss_pred EEeeeeecCCCcceeecce---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHH
Confidence 7889999973467899999 99999998 99999999999999999999999999999999999987764 457
Q ss_pred cccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 977 RQAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
|++++||||++.+|+ .|++||+.++..... +.. ... . .... ...++++.++++..++.+
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~-~~~---------~---~~~~------~~~~~~~~~~l~~~~l~~ 137 (243)
T TIGR02315 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYK-PTW-RSL---------L---GRFS------EEDKERALSALERVGLAD 137 (243)
T ss_pred HhheEEEcCCCcccccccHHHHHhhcccccc-cch-hhh---------h---cccc------HHHHHHHHHHHHHcCcHh
Confidence 889999999999887 599999987632110 000 000 0 0000 112345666677777755
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 1133 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRL 1133 (1192)
... .....||||||||++||||++++|++||||||||+||+++.+.+.+.|++..+ ++|+|+|||++
T Consensus 138 ~~~-----------~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~ 206 (243)
T TIGR02315 138 KAY-----------QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV 206 (243)
T ss_pred hhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 432 34568999999999999999999999999999999999999999999998753 78999999999
Q ss_pred hHHH-hcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1134 STII-HADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1134 STI~-~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
+.+. .||+|++|++|++++.|+++++.
T Consensus 207 ~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 207 DLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 9985 59999999999999999999873
No 73
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.8e-41 Score=389.04 Aligned_cols=206 Identities=35% Similarity=0.525 Sum_probs=179.4
Q ss_pred CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh----cccEEEEcC
Q psy13234 910 GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIGVVPQ 985 (1192)
Q Consensus 910 ~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL----R~~Ig~VPQ 985 (1192)
++.+++++| |.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+|+.+.+..++ |++|+||||
T Consensus 5 ~~~~l~~vs---~~i~~Gei---~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 5 GKKGVNDAD---LAIAKGEI---FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred CceeEEeeE---EEEcCCCE---EEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 345788888 99999888 99999999999999999999999999999999999999998888 889999999
Q ss_pred CCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCC
Q psy13234 986 DTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062 (1192)
Q Consensus 986 Dp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~ 1062 (1192)
++.||+ .|++|||.++... .+.++ .++++.++|+.+++.++..+.|
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~------------------------------~~~~~~~~l~~vgL~~~~~~~p- 127 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQE------------------------------RKEKALELLKLVGLEEYEHRYP- 127 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHhcCCchhhhCCh-
Confidence 999998 5999999986421 11111 2345566778888866654443
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH-Hhc
Q psy13234 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI-IHA 1139 (1192)
Q Consensus 1063 GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI-~~a 1139 (1192)
.+||||||||++|||||+++|+|||||||||+||+.+.+.+++.+.++.+ ++|+|+|||+++.+ +.|
T Consensus 128 ----------~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~ 197 (363)
T TIGR01186 128 ----------DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIG 197 (363)
T ss_pred ----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 47999999999999999999999999999999999999999999987743 79999999999975 569
Q ss_pred CEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1140 DEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1140 DrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+|++|++|++++.|+++|++++
T Consensus 198 drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 198 DRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999999999875
No 74
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-41 Score=369.07 Aligned_cols=217 Identities=32% Similarity=0.512 Sum_probs=196.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC-CCChHhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK-TVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~-~i~~~sLR~ 978 (1192)
+++++|+|+++.++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|++|.|.+||.+++ +.+...+|+
T Consensus 6 ~~~l~~~y~~~~~~l~~v~---~~i~~Ge~---~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 6 AENLSFRYPGRKAALKDVS---LEIEKGER---VLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred EEEEEEEcCCCceeeeeeE---EEECCCCE---EEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhc
Confidence 8899999987778999999 99999999 9999999999999999999999999999999999998 488999999
Q ss_pred cEEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
++|+|.|+| .+|..||.|.++||..+ .++||+. +++.++|+.++++
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~------------------------------~rv~~~l~~vgl~ 129 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIE------------------------------ERVAEALELVGLE 129 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHH------------------------------HHHHHHHHHcCch
Confidence 999999999 89999999999999543 4555543 4457788999998
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC--ceEEEEecC
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 1132 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g--rTvIvIAHR 1132 (1192)
++-.+- -.+||||||||+|||.+|..+|+|||||||||+||++..+.+.+.++++.++ +|+|+|||+
T Consensus 130 ~~~~r~-----------p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd 198 (235)
T COG1122 130 ELLDRP-----------PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD 198 (235)
T ss_pred hhccCC-----------ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc
Confidence 874443 3579999999999999999999999999999999999999999999998765 799999999
Q ss_pred hhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1133 LSTIIH-ADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1133 LSTI~~-aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
++.+.. ||+++||++|+++.+|+++|+.+..
T Consensus 199 ~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 199 LELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999987 9999999999999999999988653
No 75
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-41 Score=369.29 Aligned_cols=222 Identities=31% Similarity=0.422 Sum_probs=187.6
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecC
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIK 969 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~ 969 (1192)
-++ ++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++| ++|+|++||+++.
T Consensus 7 ~l~--~~~l~~~~~~-~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 7 IIE--TENLNLFYTD-FKALNNIN---IKILKNSI---TALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred eEE--EeeeEEEeCC-ceeeccee---eEEcCCCE---EEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 355 8999999964 56899999 99999998 999999999999999999999997 4899999999986
Q ss_pred C--CChHhhcccEEEEcCCCccccccHHHHHhccccCC---CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 970 T--VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINA---SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 970 ~--i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~a---sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
. .+....|++|+|+||++.+|+.|++|||.++.... +.+ ..++++
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~------------------------------~~~~~~ 127 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKK------------------------------KLDEIV 127 (254)
T ss_pred cccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHH------------------------------HHHHHH
Confidence 3 34567899999999999999999999998763100 000 123445
Q ss_pred HHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc
Q psy13234 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR 1124 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~gr 1124 (1192)
.++++..++.+.+ ++.+++ ...+||||||||++||||++++|++|||||||++||.++.+.+.+.|+++.+++
T Consensus 128 ~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 200 (254)
T PRK14273 128 EQSLKKSALWNEV---KDKLNT----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY 200 (254)
T ss_pred HHHHHHhCCchhh---HHHHhC----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCC
Confidence 6666777764433 334555 456899999999999999999999999999999999999999999999987789
Q ss_pred eEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1125 TTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1125 TvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 201 tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 201 TIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239 (254)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999875 5999999999999999999999854
No 76
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-41 Score=368.98 Aligned_cols=222 Identities=30% Similarity=0.447 Sum_probs=187.5
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT 970 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~~ 970 (1192)
++ ++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++ |++|+|.+||+++..
T Consensus 7 l~--~~~l~~~~~~-~~il~~is---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 7 ME--ARGLSFFYGD-FQALHDIS---LEFEQNQV---TALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred EE--EeeeEEEECC-eeeeccee---EEEeCCCE---EEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 55 8999999964 56899999 99999998 99999999999999999999975 689999999999975
Q ss_pred --CChHhhcccEEEEcCCCccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHH
Q psy13234 971 --VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046 (1192)
Q Consensus 971 --i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~ 1046 (1192)
.+...+|++|+|+||++.+|+.|++||+.++... ..++ +..++++.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~-----------------------------~~~~~~~~~ 128 (253)
T PRK14242 78 PHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDK-----------------------------AYLAERVER 128 (253)
T ss_pred cccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCH-----------------------------HHHHHHHHH
Confidence 4456788999999999999999999999875310 0000 012345566
Q ss_pred HHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceE
Q psy13234 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 1126 (1192)
Q Consensus 1047 AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTv 1126 (1192)
+++..++++.+. +.......+||||||||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+
T Consensus 129 ~l~~~~l~~~~~-------~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tv 201 (253)
T PRK14242 129 SLRHAALWDEVK-------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTI 201 (253)
T ss_pred HHHHcCCchhhh-------HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeE
Confidence 677777765432 2234556789999999999999999999999999999999999999999999998778999
Q ss_pred EEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1127 IIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1127 IvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 202 ii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 202 IIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred EEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 99999999885 5999999999999999999999754
No 77
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.5e-41 Score=361.38 Aligned_cols=212 Identities=26% Similarity=0.440 Sum_probs=180.2
Q ss_pred cccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|+++.|+.+ +++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|+
T Consensus 3 ~~~l~~~~~~~~~~il~~is---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~ 75 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLS---LNVYKGEI---FGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQ 75 (220)
T ss_pred EEeeEEEeCCCCceeecceE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhh
Confidence 78899999653 67899999 99999998 9999999999999999999999999999999999987643 67788
Q ss_pred cEEEEcCCCccc-cccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 979 AIGVVPQDTVLF-NNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 979 ~Ig~VPQDp~LF-nGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
+++||||++.+| +.|++||+.+... ..++++ .++++.++++..++.+
T Consensus 76 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~~ 125 (220)
T cd03263 76 SLGYCPQFDALFDELTVREHLRFYARLKGLPKSE------------------------------IKEEVELLLRVLGLTD 125 (220)
T ss_pred hEEEecCcCCccccCCHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHcCCHH
Confidence 999999999999 5799999986421 011111 1234455667666654
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhH
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 1135 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLST 1135 (1192)
.. ++.+ ..||||||||++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.
T Consensus 126 ~~-------~~~~----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 194 (220)
T cd03263 126 KA-------NKRA----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDE 194 (220)
T ss_pred HH-------hChh----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 33 3333 479999999999999999999999999999999999999999999998878999999999998
Q ss_pred HH-hcCEEEEEeCCEEEEEcCHHHH
Q psy13234 1136 II-HADEILVMHAGEIVERGRHEEL 1159 (1192)
Q Consensus 1136 I~-~aDrIlVLe~G~IvE~GtheEL 1159 (1192)
+. .||+|++|++|++++.|+++++
T Consensus 195 ~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 195 AEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHhcCEEEEEECCEEEecCCHHHc
Confidence 86 4999999999999999999875
No 78
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=382.06 Aligned_cols=213 Identities=31% Similarity=0.496 Sum_probs=188.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+..+|.... +++++| +.+.+|+. ++++|||||||||++|+|+|+.+|++|+|.|||.|+.++++++ +.
T Consensus 6 l~~v~K~yg~~~-~l~~i~---l~i~~Gef---~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ 76 (338)
T COG3839 6 LKNVRKSFGSFE-VLKDVN---LDIEDGEF---VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RG 76 (338)
T ss_pred EeeeEEEcCCce-eeecce---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CC
Confidence 889999997644 889999 99999888 9999999999999999999999999999999999999999876 78
Q ss_pred EEEEcCCCccccc-cHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
|++|+|+..||+- ||+|||+|+-.. .+.+|+ ++++.++++..++.+.
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei------------------------------~~rV~eva~~L~l~~l 126 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI------------------------------DKRVKEVAKLLGLEHL 126 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHH------------------------------HHHHHHHHHHcCChhH
Confidence 9999999999996 999999998321 122222 4556667799999888
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
+++.| ..||||||||+||||||.++|++++||||.||||++....+..-|+++.+ +.|+|.|||+..
T Consensus 127 L~r~P-----------~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~ 195 (338)
T COG3839 127 LNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195 (338)
T ss_pred HhcCc-----------ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence 87766 46999999999999999999999999999999999999999999887654 489999999976
Q ss_pred H-HHhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1135 T-IIHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1135 T-I~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
. +.-+|||.||++|+|.+.|+++|+..+
T Consensus 196 EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 196 EAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 4 567999999999999999999999965
No 79
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-41 Score=374.88 Aligned_cols=218 Identities=31% Similarity=0.504 Sum_probs=184.3
Q ss_pred cccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC--h
Q psy13234 900 MEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--Q 973 (1192)
Q Consensus 900 fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~--~ 973 (1192)
++|++++|+.. +++++++| +++.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++.+.+ .
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs---~~i~~Ge~---~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVN---IEIEDGEF---VGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEECCCCCccccceeeeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccH
Confidence 88999999742 46899999 99999998 9999999999999999999999999999999999998754 4
Q ss_pred HhhcccEEEEcCCC--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDT--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
..+|++||||||+| .+|+.|++|||.++.. +.++++.. +++.++++
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~------------------------------~~~~~~l~ 128 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIE------------------------------NRVKRAMN 128 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHH------------------------------HHHHHHHH
Confidence 57889999999998 6889999999987632 12332222 23455667
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTI 1127 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvI 1127 (1192)
..++. +++........||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|
T Consensus 129 ~~gL~---------~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi 199 (287)
T PRK13637 129 IVGLD---------YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTII 199 (287)
T ss_pred HcCCC---------chhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 77664 11223344568999999999999999999999999999999999999999999998754 79999
Q ss_pred EEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1128 IVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1128 vIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+|||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 200 ~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 200 LVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999875 6999999999999999999998753
No 80
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-41 Score=383.63 Aligned_cols=225 Identities=28% Similarity=0.412 Sum_probs=188.0
Q ss_pred cccceeeecC---CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-
Q psy13234 900 MEEDQFGFRK---GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS- 975 (1192)
Q Consensus 900 fenVsFsY~~---~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s- 975 (1192)
++|++++|+. ++++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||+++.+++..+
T Consensus 4 i~~l~~~y~~~~~~~~il~~vs---l~i~~Gei---~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVS---LHIPAGEI---FGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHH
Confidence 8899999972 357899999 99999998 9999999999999999999999999999999999999887654
Q ss_pred --hcccEEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 976 --LRQAIGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 976 --LR~~Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
+|++||||||++.+|+ .|++||+.++.. ..++++ .++++.+.++.
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~------------------------------~~~~~~~~l~~ 127 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAE------------------------------IKARVTELLEL 127 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHH
Confidence 4789999999999997 699999987531 111111 12344556677
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEE
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTII 1128 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIv 1128 (1192)
.++.+...+ ...+||||||||++||||++++|+||+||||||+||+++.+.+.+.|+++.+ ++|+|+
T Consensus 128 ~gL~~~~~~-----------~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiil 196 (343)
T PRK11153 128 VGLSDKADR-----------YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVL 196 (343)
T ss_pred cCCchhhhC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 666554333 2357999999999999999999999999999999999999999999998753 789999
Q ss_pred EecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC--cHHHHHHH
Q psy13234 1129 VAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERN--GVYASMWI 1171 (1192)
Q Consensus 1129 IAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~--G~Ya~L~~ 1171 (1192)
|||+++.+.. ||+|++|++|++++.|+++++.... ..++.++.
T Consensus 197 vtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK11153 197 ITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREFIQ 242 (343)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 9999999865 9999999999999999999998653 33444544
No 81
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.1e-41 Score=357.00 Aligned_cols=201 Identities=38% Similarity=0.575 Sum_probs=178.3
Q ss_pred ccccccccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh
Q psy13234 895 KIEENMEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~ 973 (1192)
.++ +++++++|+.. +++++++| +.+.+|+. +||+|+||||||||+++|+|+++|++|+|.+||.++.+.+.
T Consensus 6 ~l~--~~~l~~~~~~~~~~~l~~is---l~i~~G~~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIE--VENLSVRYAPDLPPVLKNVS---FKVKAGEK---IGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEE--EEEEEEEeCCCCcccccCce---EEECCCCE---EEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH
Confidence 455 89999999753 57899999 99999999 99999999999999999999999999999999999998888
Q ss_pred HhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
.++|++|+||||+|.+|++|++|||.+.+ ..+++++.+++ +
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l----------------------------------~---- 118 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGAL----------------------------------R---- 118 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccC-CCCHHHHHHHh----------------------------------h----
Confidence 88999999999999999999999997643 12333332222 2
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecCh
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 1133 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRL 1133 (1192)
+++....|||||+||++||||++++|+++||||||++||+++.+.+.+.|++..+++|+|+|||++
T Consensus 119 --------------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~ 184 (207)
T cd03369 119 --------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRL 184 (207)
T ss_pred --------------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 245677899999999999999999999999999999999999999999999987789999999999
Q ss_pred hHHHhcCEEEEEeCCEEEEEcCH
Q psy13234 1134 STIIHADEILVMHAGEIVERGRH 1156 (1192)
Q Consensus 1134 STI~~aDrIlVLe~G~IvE~Gth 1156 (1192)
+.+..||++++|++|++++.|++
T Consensus 185 ~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 185 RTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHhhCCEEEEEECCEEEecCCC
Confidence 99988999999999999998863
No 82
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-41 Score=361.48 Aligned_cols=216 Identities=29% Similarity=0.444 Sum_probs=183.3
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH--
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA-- 974 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~-- 974 (1192)
++|++++|+.. +++++++| +++.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++...+..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVS---LSVPKGEI---FGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred EecceEEccCCCCceeeeecce---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHH
Confidence 78999999653 27899999 99999999 999999999999999999999999999999999999887654
Q ss_pred -hhcccEEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 975 -SLRQAIGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 975 -sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
..|++|+|+||++.+|. .|++||+.++... .+.+ ..++++.++++.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~ 127 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKA------------------------------EIEERVLELLEL 127 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHH------------------------------HHHHHHHHHHHH
Confidence 35889999999999997 6999999865210 1110 113445666677
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEE
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTII 1128 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIv 1128 (1192)
.++.+...+. ..+||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|+
T Consensus 128 ~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii 196 (233)
T cd03258 128 VGLEDKADAY-----------PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVL 196 (233)
T ss_pred CCChhhhhcC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 7776554433 357999999999999999999999999999999999999999999998753 789999
Q ss_pred EecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1129 VAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1129 IAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 197 ~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 197 ITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999864 999999999999999999988653
No 83
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-41 Score=364.15 Aligned_cols=221 Identities=31% Similarity=0.442 Sum_probs=186.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||+|+...+...+|+.
T Consensus 6 ~~~l~~~~~~-~~~l~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 6 FKEVSYSSFG-KEILKDIS---VKFEGGAI---YTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred EEeEEEEeCC-eeeeeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhc
Confidence 8899999964 56899999 99999988 99999999999999999999999999999999999998888889999
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH-HHHh
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH-ERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh-d~I~ 1058 (1192)
++|+||++.+|+.|++||+.++...... .++++.+.++..++. +..
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~--------------------------------~~~~~~~~l~~~~l~~~~~- 125 (241)
T PRK14250 79 IGMVFQQPHLFEGTVKDNIEYGPMLKGE--------------------------------KNVDVEYYLSIVGLNKEYA- 125 (241)
T ss_pred EEEEecCchhchhhHHHHHhcchhhcCc--------------------------------HHHHHHHHHHHcCCCHHHh-
Confidence 9999999999999999999875311000 112334445666653 221
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI 1136 (1192)
......||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+
T Consensus 126 ----------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~ 195 (241)
T PRK14250 126 ----------TRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQA 195 (241)
T ss_pred ----------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH
Confidence 234557999999999999999999999999999999999999999999998753 79999999999988
Q ss_pred H-hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHHH
Q psy13234 1137 I-HADEILVMHAGEIVERGRHEELLERN-GVYASMW 1170 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L~ 1170 (1192)
. .||+|++|++|++++.|+++++.... ..|.+.+
T Consensus 196 ~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 231 (241)
T PRK14250 196 KRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231 (241)
T ss_pred HHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHH
Confidence 6 49999999999999999999998643 3455544
No 84
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.1e-41 Score=362.53 Aligned_cols=204 Identities=26% Similarity=0.460 Sum_probs=173.9
Q ss_pred cccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH---h
Q psy13234 900 MEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---S 975 (1192)
Q Consensus 900 fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~---s 975 (1192)
++|++++|+.+ +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++.+.+.. .
T Consensus 4 ~~~l~~~~~~~~~~il~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLN---FHITKGEM---VFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred EEEEEEEecCCCeeEEEeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 78999999654 46899999 99999999 999999999999999999999999999999999999877643 4
Q ss_pred hcccEEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 976 LRQAIGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 976 LR~~Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
+|++++|+||++.+|. .|++||+.++... .+. +..++++.++++..+
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~------------------------------~~~~~~~~~~l~~~~ 127 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPP------------------------------RDANERVSAALEKVG 127 (216)
T ss_pred HHHhceEEecCccccccccHHHHHHHHHHhcCCCH------------------------------HHHHHHHHHHHHHcC
Confidence 7889999999999987 5999999875210 000 012345667778888
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEec
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAH 1131 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAH 1131 (1192)
+.+...+.| .+||||||||++||||++++|+++|||||||+||+++.+.+.+.|++.. +++|+|+|||
T Consensus 128 l~~~~~~~~-----------~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH 196 (216)
T TIGR00960 128 LEGKAHALP-----------MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATH 196 (216)
T ss_pred ChhhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 876654443 3799999999999999999999999999999999999999999998874 4799999999
Q ss_pred ChhHHH-hcCEEEEEeCCEE
Q psy13234 1132 RLSTII-HADEILVMHAGEI 1150 (1192)
Q Consensus 1132 RLSTI~-~aDrIlVLe~G~I 1150 (1192)
+++.+. .||+|++|++|++
T Consensus 197 ~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 197 DINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CHHHHHHhCCEEEEEeCCcC
Confidence 999987 4899999999975
No 85
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-41 Score=372.70 Aligned_cols=218 Identities=29% Similarity=0.459 Sum_probs=191.0
Q ss_pred cccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|+++.|+. .+++++++| +.+.+|+. +||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+++
T Consensus 8 ~~~l~~~~~~~~~~~l~~vs---l~i~~Ge~---~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13635 8 VEHISFRYPDAATYALKDVS---FSVYEGEW---VAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRR 81 (279)
T ss_pred EEEEEEEeCCCCccceeeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhh
Confidence 8999999974 457999999 99999888 9999999999999999999999999999999999999988888899
Q ss_pred cEEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
.|+|+||++ .+++.|++|||.++... .++++ .++++.++++..+++
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~gL~ 131 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREE------------------------------MVERVDQALRQVGME 131 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHH------------------------------HHHHHHHHHHHcCCh
Confidence 999999998 57788999999875311 11111 123456677888888
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecC
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 1132 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHR 1132 (1192)
+.+.+.| ..||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+
T Consensus 132 ~~~~~~~-----------~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 132 DFLNREP-----------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred hhhhCCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7776655 37999999999999999999999999999999999999999999998764 7899999999
Q ss_pred hhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCc
Q psy13234 1133 LSTIIHADEILVMHAGEIVERGRHEELLERNG 1164 (1192)
Q Consensus 1133 LSTI~~aDrIlVLe~G~IvE~GtheELL~~~G 1164 (1192)
++.+..||+|++|++|++++.|+.+++.+...
T Consensus 201 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 201 LDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred HHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 99999999999999999999999999876543
No 86
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=4.9e-41 Score=360.42 Aligned_cols=215 Identities=25% Similarity=0.405 Sum_probs=177.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh-cc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL-R~ 978 (1192)
++|++++|+. +++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||+++.+.+..+. |+
T Consensus 3 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (222)
T cd03224 3 VENLNAGYGK-SQILFGVS---LTVPEGEI---VALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75 (222)
T ss_pred EeeEEeecCC-eeEeeeee---EEEcCCeE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhc
Confidence 7889999964 46899999 99999988 99999999999999999999999999999999999988877654 67
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
+++|+||++.+|++ |++||+.++.....+++. .+++.++++..
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~------------------------------~~~~~~~l~~~------ 119 (222)
T cd03224 76 GIGYVPEGRRIFPELTVEENLLLGAYARRRAKR------------------------------KARLERVYELF------ 119 (222)
T ss_pred CeEEeccccccCCCCcHHHHHHHHhhhcCchhH------------------------------HHHHHHHHHHH------
Confidence 89999999999997 999999876421111110 11122222222
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI 1136 (1192)
..+++.++ .....||||||||++||||++++|++++|||||++||.++.+.+.+.|++.. +++|+|++||+++.+
T Consensus 120 ~~l~~~~~----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 195 (222)
T cd03224 120 PRLKERRK----QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFA 195 (222)
T ss_pred Hhhhhhhh----CchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 11222333 4456799999999999999999999999999999999999999999998875 478999999999987
Q ss_pred Hh-cCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1137 IH-ADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1137 ~~-aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
.. ||+|++|++|++++.|+++++..
T Consensus 196 ~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 196 LEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred HHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 54 99999999999999999988754
No 87
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.4e-41 Score=370.00 Aligned_cols=221 Identities=30% Similarity=0.427 Sum_probs=192.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
.+|++|+|+ ++++++++| |.+++|+. ++|+||+|||||||+|+|.|+.+|.+|+|++||+|+.+++.+++.++
T Consensus 5 ~~~ls~~y~-~~~il~~ls---~~i~~G~i---~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 5 VENLSFGYG-GKPILDDLS---FSIPKGEI---TGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred EEEEEEEEC-CeeEEecce---EEecCCcE---EEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhh
Confidence 789999998 678999999 99999998 99999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC-ccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDT-VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp-~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
+|||||++ .-|+-|++|=+.+||-.. .++...+ .+.+++.+.+||+..++.++..
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~----------------------~~~~~~~--~~~D~~~v~~aL~~~~~~~la~ 133 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPH----------------------LGLFGRP--SKEDEEIVEEALELLGLEHLAD 133 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcc----------------------cccccCC--CHhHHHHHHHHHHHhCcHHHhc
Confidence 99999995 677889999999996210 1111100 1233446788899999998764
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhH-
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST- 1135 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST- 1135 (1192)
+. + ..||||||||+.|||||.++|+||+||||||+||....-+|++.++++.+ ++|+|+|.|+++.
T Consensus 134 r~-------~----~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A 202 (258)
T COG1120 134 RP-------V----DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA 202 (258)
T ss_pred Cc-------c----cccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 42 2 35999999999999999999999999999999999999999999998863 5999999999975
Q ss_pred HHhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1136 IIHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1136 I~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.+.||++++|++|+|+..|+++|.+..
T Consensus 203 ~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 203 ARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHhCCEEEEEECCeEEeecCcchhcCH
Confidence 578999999999999999999999865
No 88
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=8.7e-41 Score=365.23 Aligned_cols=219 Identities=31% Similarity=0.452 Sum_probs=185.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCeecCCC--C
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKTV--S 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~-----sGsI~IDG~DI~~i--~ 972 (1192)
++|++++|+. .++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|+ +|+|.+||+++... +
T Consensus 4 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 4 IENLNLFYGE-KEALKNIN---LDIPKNQV---TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEECC-eeeeccee---EEECCCCE---EEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 7899999964 46889999 99999998 9999999999999999999999998 99999999999763 4
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccC---CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARIN---ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~---asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
....|+.|+|+||++.+|+.|++||+.++... .+.+ ..++++.++++
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~------------------------------~~~~~~~~~l~ 126 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKK------------------------------ELDEIVEESLK 126 (247)
T ss_pred hHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHH------------------------------HHHHHHHHHHH
Confidence 56788999999999999999999999865210 0111 11344566778
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV 1129 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvI 1129 (1192)
..++.+.+. .........||||||||++||||++++|+++|||||||+||+++.+.+.+.|++..+++|+|+|
T Consensus 127 ~~~l~~~~~-------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 199 (247)
T TIGR00972 127 KAALWDEVK-------DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIV 199 (247)
T ss_pred HcCCCcchh-------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEE
Confidence 888764331 1123445689999999999999999999999999999999999999999999988777999999
Q ss_pred ecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1130 AHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1130 AHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
||+++.+. .||+|++|++|++++.|+++|+...
T Consensus 200 sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 200 THNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred ecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999875 5999999999999999999998754
No 89
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-41 Score=384.21 Aligned_cols=214 Identities=29% Similarity=0.456 Sum_probs=184.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|.. +.+++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. +++
T Consensus 9 ~~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 79 (351)
T PRK11432 9 LKNITKRFGS-NTVIDNLN---LTIKQGTM---VTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRD 79 (351)
T ss_pred EEeEEEEECC-eEEEeeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 8899999963 56889999 99999888 999999999999999999999999999999999999887653 578
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
|+||+|++.||+. |++|||.|+.. ..++++ .++++.++++..++.+.
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~------------------------------~~~~v~~~l~~~gl~~~ 129 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEE------------------------------RKQRVKEALELVDLAGF 129 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHH------------------------------HHHHHHHHHHHcCCchh
Confidence 9999999999975 99999998732 112221 13455667788888765
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+.| ..||||||||+||||||+++|++|+||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++
T Consensus 130 ~~r~~-----------~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 130 EDRYV-----------DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred hcCCh-----------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 54443 47999999999999999999999999999999999999999999998755 699999999999
Q ss_pred HH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1135 TI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1135 TI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
.+ .-||+|++|++|+|++.|+++|+.++.
T Consensus 199 e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 199 EAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 87 569999999999999999999998653
No 90
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=367.44 Aligned_cols=223 Identities=31% Similarity=0.471 Sum_probs=189.2
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeec
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNI 968 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI 968 (1192)
+.++ ++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++ |++|+|.+||+++
T Consensus 12 ~~l~--~~~l~~~~~~-~~il~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 12 SKIQ--VRNLNFYYGK-FHALKNIN---LDIAKNQV---TAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred ceEE--EEEEEEEeCC-eEEeecee---EEEcCCCE---EEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 4566 8999999964 46899999 99999998 99999999999999999999986 5899999999998
Q ss_pred CC--CChHhhcccEEEEcCCCccccccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHH
Q psy13234 969 KT--VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE 1043 (1192)
Q Consensus 969 ~~--i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdee 1043 (1192)
.. .+...+|++|+|+||++.+|+.|++||+.++.. ..+.++ .+++
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~------------------------------~~~~ 132 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAE------------------------------MDER 132 (260)
T ss_pred cccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHH------------------------------HHHH
Confidence 63 456788999999999999999999999987531 111111 1344
Q ss_pred HHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC
Q psy13234 1044 VKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS 1123 (1192)
Q Consensus 1044 I~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g 1123 (1192)
+.++++..++.+.+ +....+...+||||||||++||||++++|+|+|||||||+||.++.+.+.+.|++..++
T Consensus 133 ~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 205 (260)
T PRK10744 133 VEWALTKAALWNEV-------KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD 205 (260)
T ss_pred HHHHHHHcCCChhh-------HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC
Confidence 56677777765433 22345567789999999999999999999999999999999999999999999998778
Q ss_pred ceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1124 RTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1124 rTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+|+|+|||+++.+. -||+|++|++|++++.|+++++.+.
T Consensus 206 ~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 206 YTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245 (260)
T ss_pred CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999885 5999999999999999999998764
No 91
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=370.47 Aligned_cols=218 Identities=28% Similarity=0.429 Sum_probs=188.7
Q ss_pred cccceeeecCC--CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhc
Q psy13234 900 MEEDQFGFRKG--KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~--~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR 977 (1192)
++|++++|+.. +++++++| +.+.+|+. +||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~---l~i~~Ge~---~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVS---FSITKGEW---VSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 89999999742 45899999 99999998 999999999999999999999999999999999999888888899
Q ss_pred ccEEEEcCCC--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 978 QAIGVVPQDT--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 978 ~~Ig~VPQDp--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
++|+|+||+| .+++.|+.|||.++.. +.+++++ .+++.++++..++
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~l 130 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEM------------------------------IKRVDEALLAVNM 130 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHH------------------------------HHHHHHHHHHCCC
Confidence 9999999998 4778999999987532 1222222 1234566688888
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEec
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 1131 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAH 1131 (1192)
.+...+. ...||||||||++||||++++|+|+||||||++||+++.+.+.+.|+++.+ ++|+|+|||
T Consensus 131 ~~~~~~~-----------~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH 199 (277)
T PRK13642 131 LDFKTRE-----------PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH 199 (277)
T ss_pred HhHhhCC-----------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 7654432 357999999999999999999999999999999999999999999998864 799999999
Q ss_pred ChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCc
Q psy13234 1132 RLSTIIHADEILVMHAGEIVERGRHEELLERNG 1164 (1192)
Q Consensus 1132 RLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G 1164 (1192)
+++.+..||+|++|++|++++.|+++|+++..+
T Consensus 200 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 200 DLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred CHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 999998999999999999999999999986543
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-41 Score=364.37 Aligned_cols=219 Identities=26% Similarity=0.384 Sum_probs=180.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +++.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++...+. .+++
T Consensus 5 ~~~l~~~~~~-~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~ 75 (239)
T cd03296 5 VRNVSKRFGD-FVALDDVS---LDIPSGEL---VALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERN 75 (239)
T ss_pred EEeEEEEECC-EEeeeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccc
Confidence 8899999964 56899999 99999988 99999999999999999999999999999999999877654 3678
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
|+||||+|.+|. .|++||+.++...... .+..+. ...++++.++++..++.+...
T Consensus 76 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-------------------~~~~~~-----~~~~~~~~~~l~~~~l~~~~~ 131 (239)
T cd03296 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPR-------------------SERPPE-----AEIRAKVHELLKLVQLDWLAD 131 (239)
T ss_pred eEEEecCCcccCCCCHHHHHhhhhhhccc-------------------cccCCH-----HHHHHHHHHHHHHcCChhhhh
Confidence 999999999996 6999999875311000 000000 011234556667777755443
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI 1136 (1192)
+ ....||||||||++||||++++|++||||||||+||+++.+.+.+.|++..+ ++|+|+|||+++.+
T Consensus 132 ~-----------~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~ 200 (239)
T cd03296 132 R-----------YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEA 200 (239)
T ss_pred c-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 3 2357999999999999999999999999999999999999999999998754 68999999999986
Q ss_pred H-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1137 I-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
. .||+|++|++|++++.|+++++.+.
T Consensus 201 ~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 201 LEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 5 5999999999999999999998754
No 93
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-40 Score=371.83 Aligned_cols=217 Identities=28% Similarity=0.443 Sum_probs=186.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC--CCChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~--~i~~~sLR 977 (1192)
++|++++|+.++++++++| +.+.+|+. +||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+...+|
T Consensus 8 ~~~l~~~~~~~~~~l~~vs---~~i~~Ge~---~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 8 VEELNYNYSDGTHALKGIN---INIKKGEV---TAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred EEeEEEEeCCCCeeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 8999999975567999999 99999888 9999999999999999999999999999999999984 34566789
Q ss_pred ccEEEEcCCC--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 978 QAIGVVPQDT--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 978 ~~Ig~VPQDp--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
++|+|+||++ .+|+.|++|||.++.. +.+.++. ++++.++++..++
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~gL 131 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEV------------------------------RKRVDNALKRTGI 131 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHH------------------------------HHHHHHHHHHCCC
Confidence 9999999998 6789999999987532 1122211 2334556677777
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEec
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 1131 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAH 1131 (1192)
++.. .....+||||||||++|||||+.+|+||||||||++||+++.+.+.+.|+++.+ ++|+|++||
T Consensus 132 ~~~~-----------~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH 200 (283)
T PRK13636 132 EHLK-----------DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATH 200 (283)
T ss_pred hhhh-----------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 6542 234668999999999999999999999999999999999999999999998764 799999999
Q ss_pred ChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1132 RLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1132 RLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 201 ~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 233 (283)
T PRK13636 201 DIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233 (283)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999986 69999999999999999999988653
No 94
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-40 Score=372.39 Aligned_cols=216 Identities=22% Similarity=0.399 Sum_probs=183.3
Q ss_pred cccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC----C
Q psy13234 900 MEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT----V 971 (1192)
Q Consensus 900 fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~----i 971 (1192)
++|++++|+.+ +++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|++||.++.. .
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vs---l~i~~Ge~---v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDID---LEVKKGSY---TALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeE---EEEcCCCE---EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 88999999743 25899999 99999999 99999999999999999999999999999999999863 3
Q ss_pred ChHhhcccEEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 972 SQASLRQAIGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
+..++|++||||+|+| .+|+.|+.|||.|+... .+++++ ++++.++
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~ 127 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA------------------------------EKIAAEK 127 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHH------------------------------HHHHHHH
Confidence 4567899999999998 79999999999987421 222222 2334556
Q ss_pred HHHcChH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCce
Q psy13234 1048 ATSADIH-ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRT 1125 (1192)
Q Consensus 1048 L~~A~Lh-d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grT 1125 (1192)
++..++. ++. ......||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|
T Consensus 128 l~~~~L~~~~~-----------~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~t 196 (288)
T PRK13643 128 LEMVGLADEFW-----------EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQT 196 (288)
T ss_pred HHHcCCChhhc-----------cCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCE
Confidence 6777763 222 23345899999999999999999999999999999999999999999998875 4799
Q ss_pred EEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1126 TIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1126 vIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+|+|||+++.+. .||+|++|++|++++.|+++|+.++
T Consensus 197 il~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 197 VVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred EEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999874 6999999999999999999998753
No 95
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=368.10 Aligned_cols=217 Identities=27% Similarity=0.476 Sum_probs=187.1
Q ss_pred cccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|++++|+. ++++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+
T Consensus 10 ~~nl~~~~~~~~~~il~~is---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 10 VENVSFSYPNSENNALKNVS---FEINEGEY---VAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred EEeEEEEcCCCCccceeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhc
Confidence 8999999973 567899999 99999998 9999999999999999999999999999999999998888888999
Q ss_pred cEEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
+|+|+||++ .+++.|++|||.++... .++++. ++++.++++..++.
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~l~ 133 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM------------------------------KDIIDDLAKKVGME 133 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHH------------------------------HHHHHHHHHHcCCH
Confidence 999999998 46678999999875311 111111 22345566777777
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecC
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 1132 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHR 1132 (1192)
+...+. ..+||||||||++||||++++|++||||||||+||..+.+.+.+.|++..+ ++|+|++||+
T Consensus 134 ~~~~~~-----------~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 202 (271)
T PRK13632 134 DYLDKE-----------PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 (271)
T ss_pred HHhhCC-----------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence 665443 358999999999999999999999999999999999999999999998754 4899999999
Q ss_pred hhHHHhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1133 LSTIIHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1133 LSTI~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
++.+..||+|++|++|++++.|+.+++.+..
T Consensus 203 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 203 MDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred hhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 9999899999999999999999999987643
No 96
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-41 Score=357.57 Aligned_cols=205 Identities=32% Similarity=0.488 Sum_probs=173.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++.+.+. .+++
T Consensus 3 ~~~l~~~~~~-~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~ 73 (213)
T cd03259 3 LKGLSKTYGS-VRALDDLS---LTVEPGEF---LALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRN 73 (213)
T ss_pred eeeeEEEeCC-eeeeccee---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhcc
Confidence 7889999964 57899999 99999999 99999999999999999999999999999999999987543 5778
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+|. .|++||+.++... .+.+ ..++++.++++..++.+.
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~l~~~ 123 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKA------------------------------EIRARVRELLELVGLEGL 123 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHH------------------------------HHHHHHHHHHHHcCChhh
Confidence 999999999886 6999999875321 0111 113345566677777665
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+.| .+||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++
T Consensus 124 ~~~~~-----------~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 124 LNRYP-----------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred hhcCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 44333 47999999999999999999999999999999999999999999998753 799999999999
Q ss_pred HHH-hcCEEEEEeCCEEEEEc
Q psy13234 1135 TII-HADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~IvE~G 1154 (1192)
.+. .||+|++|++|++++.|
T Consensus 193 ~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 193 EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHhcCEEEEEECCEEEecC
Confidence 875 59999999999999876
No 97
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=368.88 Aligned_cols=217 Identities=30% Similarity=0.446 Sum_probs=188.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.++++++++| +++.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||+++...+...++++
T Consensus 6 ~~~l~~~~~~~~~~l~~vs---l~i~~Ge~---~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 6 TRDLCYSYSGSKEALNNIN---FIAPRNSR---IAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred EEEEEEEeCCCCceeeEeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 7899999975556899999 99999998 99999999999999999999999999999999999988888889999
Q ss_pred EEEEcCCC--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 980 IGVVPQDT--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 980 Ig~VPQDp--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
++||||++ .+|+.|++||+.++.. +.++++ .++++.++++..++++
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~~ 129 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEET------------------------------VAHRVSSALHMLGLEE 129 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHH------------------------------HHHHHHHHHHHCCChh
Confidence 99999998 4888999999987532 112211 1334566778888877
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 1133 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRL 1133 (1192)
...+.| ..||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++
T Consensus 130 ~~~~~~-----------~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 198 (277)
T PRK13652 130 LRDRVP-----------HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL 198 (277)
T ss_pred HhcCCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 655443 47999999999999999999999999999999999999999999988754 79999999999
Q ss_pred hHH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1134 STI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1134 STI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+.+ ..||+|++|++|++++.|+++|+++..
T Consensus 199 ~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 199 DLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 998 569999999999999999999998654
No 98
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=364.55 Aligned_cols=220 Identities=24% Similarity=0.373 Sum_probs=185.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecC--CCC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIK--TVS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~--~i~ 972 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++| ++|+|.+||+++. +.+
T Consensus 7 ~~~l~~~~~~-~~~l~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (253)
T PRK14267 7 TVNLRVYYGS-NHVIKGVD---LKIPQNGV---FALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79 (253)
T ss_pred EEeEEEEeCC-eeeeecce---EEEcCCCE---EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccC
Confidence 8899999964 56899999 99999998 999999999999999999999997 4999999999997 456
Q ss_pred hHhhcccEEEEcCCCccccc-cHHHHHhcccc--CC--CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNN-SIKFNIQYARI--NA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~--~a--sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
...+|++|+|+||++.+|++ |++||+.++.. +. +.++ .++++.++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 129 (253)
T PRK14267 80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE------------------------------LDERVEWA 129 (253)
T ss_pred hHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHH------------------------------HHHHHHHH
Confidence 66788999999999999976 99999987521 00 1111 12344556
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEE
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 1127 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvI 1127 (1192)
++..++.+.+. .........||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+++|+|
T Consensus 130 l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii 202 (253)
T PRK14267 130 LKKAALWDEVK-------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIV 202 (253)
T ss_pred HHHcCCccchh-------hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEE
Confidence 67766644332 12344566899999999999999999999999999999999999999999999987789999
Q ss_pred EEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1128 IVAHRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1128 vIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 203 i~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 239 (253)
T PRK14267 203 LVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENP 239 (253)
T ss_pred EEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 9999999876 59999999999999999999998653
No 99
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-40 Score=353.39 Aligned_cols=196 Identities=31% Similarity=0.518 Sum_probs=175.7
Q ss_pred cccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh
Q psy13234 900 MEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 900 fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s 975 (1192)
++|++++|+.. +++++++| +.+++|+. ++|+||+|||||||+++|+|+++|++|+|.+||
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s---~~i~~G~~---~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---------- 66 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDIN---LEVPKGEL---VAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------- 66 (204)
T ss_pred EeEEEEecCCCCccccceeeeee---EEECCCCE---EEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----------
Confidence 78999999764 36999999 99999999 999999999999999999999999999999999
Q ss_pred hcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 976 LRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 976 LR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
+|+|+||+|.+|++|++||+.++.. .++++ +.++++.+++.+
T Consensus 67 ---~i~~~~q~~~l~~~t~~enl~~~~~-~~~~~----------------------------------~~~~~~~~~l~~ 108 (204)
T cd03250 67 ---SIAYVSQEPWIQNGTIRENILFGKP-FDEER----------------------------------YEKVIKACALEP 108 (204)
T ss_pred ---EEEEEecCchhccCcHHHHhccCCC-cCHHH----------------------------------HHHHHHHcCcHH
Confidence 5999999999999999999988632 22223 334448889999
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCceEEEEecCh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS-ALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~-aL~~l~-~grTvIvIAHRL 1133 (1192)
.+..+|.|++|.+++++..||||||||++||||++.+|++++|||||++||+++.+.+.+ .+++.. +++|+|++||++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~ 188 (204)
T cd03250 109 DLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188 (204)
T ss_pred HHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 999999999999999999999999999999999999999999999999999999998877 456553 469999999999
Q ss_pred hHHHhcCEEEEEeCCE
Q psy13234 1134 STIIHADEILVMHAGE 1149 (1192)
Q Consensus 1134 STI~~aDrIlVLe~G~ 1149 (1192)
+.+..||+|++|++|+
T Consensus 189 ~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 189 QLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHhhCCEEEEEeCCC
Confidence 9999999999999985
No 100
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.8e-41 Score=355.25 Aligned_cols=200 Identities=28% Similarity=0.495 Sum_probs=170.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.++++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++.. ...|++
T Consensus 2 ~~~l~~~~~~~~~~l~~v~---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~ 72 (205)
T cd03226 2 IENISFSYKKGTEILDDLS---LDLYAGEI---IALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKS 72 (205)
T ss_pred cccEEEEeCCcCceeeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcc
Confidence 6788999965357899999 99999998 99999999999999999999999999999999999864 467789
Q ss_pred EEEEcCCC--ccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDT--VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp--~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
|+|+||++ .+|+.|++||+.++.+...+ .++++.++++..++.+..
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~--------------------------------~~~~~~~~l~~~~l~~~~ 120 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKELDA--------------------------------GNEQAETVLKDLDLYALK 120 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhcCc--------------------------------cHHHHHHHHHHcCCchhc
Confidence 99999998 47889999999875321110 123455566888887665
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCceEEEEecChhHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l-~~grTvIvIAHRLSTI 1136 (1192)
.+.| ..||||||||++||||++++|++++|||||++||+++.+.+.+.|++. .+++|+|++||+++.+
T Consensus 121 ~~~~-----------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 189 (205)
T cd03226 121 ERHP-----------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL 189 (205)
T ss_pred CCCc-----------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4444 379999999999999999999999999999999999999999999887 4579999999999998
Q ss_pred H-hcCEEEEEeCCEEE
Q psy13234 1137 I-HADEILVMHAGEIV 1151 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~Iv 1151 (1192)
. .||+|++|++|+++
T Consensus 190 ~~~~d~i~~l~~G~iv 205 (205)
T cd03226 190 AKVCDRVLLLANGAIV 205 (205)
T ss_pred HHhCCEEEEEECCEEC
Confidence 6 49999999999975
No 101
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=371.72 Aligned_cols=217 Identities=26% Similarity=0.455 Sum_probs=183.5
Q ss_pred cccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC----C
Q psy13234 900 MEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT----V 971 (1192)
Q Consensus 900 fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~----i 971 (1192)
++|++++|+.. +++++++| +.+.+|+. +||+|+||||||||+++|.|+.+|++|+|.+||+++.. .
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVN---VSIPSGSY---VAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEECCCCcccccceeeEE---EEEcCCCE---EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 88999999742 46899999 99999988 99999999999999999999999999999999999863 3
Q ss_pred ChHhhcccEEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 972 SQASLRQAIGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
+....|+.||||||+| .+|+.|++|||.++... .++++. .+++.++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~------------------------------~~~~~~~ 128 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA------------------------------KQKAREM 128 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHH------------------------------HHHHHHH
Confidence 4667889999999998 68999999999886321 222222 1234556
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--Cce
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRT 1125 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grT 1125 (1192)
++..++++.+ .+ .....||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|
T Consensus 129 l~~~gL~~~~------~~----~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~t 198 (290)
T PRK13634 129 IELVGLPEEL------LA----RSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLT 198 (290)
T ss_pred HHHCCCChhh------hh----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 6777775322 12 33457999999999999999999999999999999999999999999998753 789
Q ss_pred EEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1126 TIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1126 vIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 199 viiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 199 TVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999875 5999999999999999999998754
No 102
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-40 Score=354.01 Aligned_cols=205 Identities=26% Similarity=0.455 Sum_probs=176.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+++.|+. +++++++| +.+.+| . +||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..+|++
T Consensus 3 ~~~~~~~~~~-~~~l~~vs---~~i~~g-~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~ 73 (211)
T cd03264 3 LENLTKRYGK-KRALDGVS---LTLGPG-M---YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRR 73 (211)
T ss_pred EEEEEEEECC-EEEEccee---EEEcCC-c---EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhh
Confidence 7889999964 46899999 999998 7 9999999999999999999999999999999999998877 778999
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+|.+ |++||+.+... +.++++ .++++.++++..++.+.
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~~~ 123 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE------------------------------VKARVDEVLELVNLGDR 123 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHH------------------------------HHHHHHHHHHHCCCHHH
Confidence 9999999999986 99999986421 011111 12345666788887654
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI 1136 (1192)
. ++.+ ..||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+++|+|+|||+++.+
T Consensus 124 ~-------~~~~----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 192 (211)
T cd03264 124 A-------KKKI----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDV 192 (211)
T ss_pred H-------hCch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 3 3333 4799999999999999999999999999999999999999999999988789999999999998
Q ss_pred H-hcCEEEEEeCCEEEEEc
Q psy13234 1137 I-HADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~IvE~G 1154 (1192)
. .||+|++|++|++++.|
T Consensus 193 ~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 193 ESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhCCEEEEEECCEEEecC
Confidence 6 59999999999999865
No 103
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-40 Score=362.73 Aligned_cols=218 Identities=30% Similarity=0.475 Sum_probs=183.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++++++|+.++++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++...+...+|+.
T Consensus 3 ~~~l~~~~~~~~~~l~~is---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLN---LEIAKGEF---LVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK 76 (242)
T ss_pred EEEEEEEeCCcceEeeeeE---EEECCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcc
Confidence 7889999975356899999 99999999 99999999999999999999999999999999999998888888999
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+|. .|++||+.++... .+.+ ..++++.++++..++.+
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~l~l~~- 125 (242)
T cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKE------------------------------KIRERADELLALVGLDP- 125 (242)
T ss_pred eEEEccCccccCCCcHHHHHHHHHHHcCCCHH------------------------------HHHHHHHHHHHHcCCCc-
Confidence 999999999996 6999999865210 0100 01233444555555532
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
+........+||||||||++||||++++|++++||||||+||.++.+.+.+.|++..+ ++|+|++||+++
T Consensus 126 --------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~ 197 (242)
T cd03295 126 --------AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197 (242)
T ss_pred --------HHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 0122344568999999999999999999999999999999999999999999998753 799999999999
Q ss_pred HH-HhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1135 TI-IHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1135 TI-~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.+ ..||+|++|++|++++.|+++++.+.
T Consensus 198 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 198 EAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 76 46999999999999999999998754
No 104
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=370.65 Aligned_cols=217 Identities=25% Similarity=0.453 Sum_probs=182.1
Q ss_pred cccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC----
Q psy13234 900 MEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV---- 971 (1192)
Q Consensus 900 fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i---- 971 (1192)
++|++++|+.+ +++++++| +.+.+|+. +||+||||||||||+++|+|+++|++|+|.+||+++...
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVN---TEFEQGKY---YAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEECCCCccccCceeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 88999999642 46999999 99999998 999999999999999999999999999999999999754
Q ss_pred ChHhhcccEEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 972 SQASLRQAIGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
+...+|++||||||+| .+|+.|+.|||.++... .+.++. ++++.++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~------------------------------~~~~~~~ 128 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEV------------------------------KNYAHRL 128 (286)
T ss_pred hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHH------------------------------HHHHHHH
Confidence 3467899999999998 68999999999886321 122222 1223334
Q ss_pred HHHcChHHHHhcCCCCCccc-ccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCc
Q psy13234 1048 ATSADIHERILSFPDGYDTQ-VGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASR 1124 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~-VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~gr 1124 (1192)
++..++ ++. ......+||||||||++|||||+.+|+|+|||||||+||+.+.+.+.+.|+++. +++
T Consensus 129 l~~~gL-----------~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 197 (286)
T PRK13646 129 LMDLGF-----------SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENK 197 (286)
T ss_pred HHHcCC-----------ChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence 444444 322 234567899999999999999999999999999999999999999999999874 479
Q ss_pred eEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1125 TTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1125 TvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 198 tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 237 (286)
T PRK13646 198 TIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237 (286)
T ss_pred EEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCH
Confidence 9999999999875 68999999999999999999988754
No 105
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-40 Score=367.11 Aligned_cols=221 Identities=31% Similarity=0.460 Sum_probs=185.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh---
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL--- 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL--- 976 (1192)
++|++.+|.. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 27 ~~~~~~~~~~-~~il~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 27 KEEILKKTGQ-TVGVNDVS---LDVREGEI---FVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhcCC-ceEeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 6678888854 46889999 99999988 99999999999999999999999999999999999988776554
Q ss_pred -cccEEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 977 -RQAIGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 977 -R~~Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
+++++|+||++.+|+ .|++|||.++... .+.+ ..++++.++++..+
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~ 149 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRA------------------------------EREERAAEALELVG 149 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHH------------------------------HHHHHHHHHHHHcC
Confidence 468999999999995 6999999875210 0110 12345666778888
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 1130 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIA 1130 (1192)
+.+.+.+.| .+||||||||++||||++++|+||||||||++||+++.+.+.+.|+++.+ ++|+|++|
T Consensus 150 l~~~~~~~~-----------~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~t 218 (269)
T cd03294 150 LEGWEHKYP-----------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218 (269)
T ss_pred CHhHhhCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 877665554 26999999999999999999999999999999999999999999988753 79999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc-CcHHHH
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLER-NGVYAS 1168 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~ 1168 (1192)
|+++.+. .||+|++|++|++++.|+++|+++. ...|.+
T Consensus 219 H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 258 (269)
T cd03294 219 HDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258 (269)
T ss_pred CCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHHH
Confidence 9999875 5999999999999999999999854 344543
No 106
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4e-40 Score=357.69 Aligned_cols=214 Identities=26% Similarity=0.483 Sum_probs=179.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.+. +++
T Consensus 4 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~ 75 (236)
T TIGR03864 4 VAGLSFAYGA-RRALDDVS---FTVRPGEF---VALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LAR 75 (236)
T ss_pred EEeeEEEECC-EEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhh
Confidence 7889999964 56899999 99999998 9999999999999999999999999999999999998876544 468
Q ss_pred EEEEcCCCcc-ccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVL-FNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~L-FnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+ ++.|++||+.++.. +.+.++ .++++.+.++..++.
T Consensus 76 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~gl~-- 123 (236)
T TIGR03864 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAE------------------------------ARERIAALLARLGLA-- 123 (236)
T ss_pred EEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHHHcCCh--
Confidence 9999999988 56899999986421 111111 112333444544443
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLS 1134 (1192)
.........||||||||++||||++++|+++|||||||+||+++.+.+.+.|+++. +++|+|++||+++
T Consensus 124 ---------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 124 ---------ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred ---------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 33344556899999999999999999999999999999999999999999999875 3799999999999
Q ss_pred HHHhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1135 TIIHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1135 TI~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.+..||+|++|++|++++.|+++++.+.
T Consensus 195 ~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 195 EIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9989999999999999999999999876
No 107
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.6e-40 Score=355.76 Aligned_cols=206 Identities=29% Similarity=0.442 Sum_probs=169.9
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH--
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA-- 974 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~-- 974 (1192)
++|++..|..+ ..++++++ +.+++|+. +||+||||||||||+++|-++-.|++|.|.++|+|+..++.+
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~---l~i~~Ge~---vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVN---LEIEAGEF---VAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred EeeeEEEeccCCcceEecccce---EEEcCCCE---EEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHH
Confidence 67777777643 36788998 99999888 999999999999999999999999999999999999999853
Q ss_pred -hh-cccEEEEcCCCccccc-cHHHHHhccc--cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 975 -SL-RQAIGVVPQDTVLFNN-SIKFNIQYAR--INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 975 -sL-R~~Ig~VPQDp~LFnG-TIreNI~~G~--~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
.+ |++||+|+|+..|++. |++|||.+.- ......+. ++...+.++
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~------------------------------~~~~~~l~~ 127 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR------------------------------KRAAEELLE 127 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHH------------------------------HHHHHHHHH
Confidence 33 5679999999999885 9999998421 01111011 233344556
Q ss_pred HcChHHHHh-cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceE
Q psy13234 1050 SADIHERIL-SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTT 1126 (1192)
Q Consensus 1050 ~A~Lhd~I~-~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTv 1126 (1192)
..++.+... +. -..||||||||+||||||..+|+|++.||||+|||++|.+.|.+.+++..+ |+|+
T Consensus 128 ~lgl~~~~~~~~-----------p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~ti 196 (226)
T COG1136 128 VLGLEDRLLKKK-----------PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTI 196 (226)
T ss_pred hcCChhhhccCC-----------chhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEE
Confidence 667765443 32 347999999999999999999999999999999999999999999998843 6899
Q ss_pred EEEecChhHHHhcCEEEEEeCCEEEE
Q psy13234 1127 IIVAHRLSTIIHADEILVMHAGEIVE 1152 (1192)
Q Consensus 1127 IvIAHRLSTI~~aDrIlVLe~G~IvE 1152 (1192)
|+|||++.....|||++.|+||++.+
T Consensus 197 i~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 197 IMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred EEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999544
No 108
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=365.31 Aligned_cols=223 Identities=26% Similarity=0.413 Sum_probs=185.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCCCC--
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKTVS-- 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~~i~-- 972 (1192)
++|+++.|+ ++++++++| +.+.+|+. ++|+|+||||||||+++|+|+++ |++|+|.+||+++.+.+
T Consensus 8 ~~~l~~~~~-~~~~l~~is---~~i~~Ge~---~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 8 VKNLNLWYG-SKQILFDIN---LDIYKREV---TAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred eeeEEEEEC-CeeeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 889999996 357899999 99999988 99999999999999999999986 47999999999987654
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
...+|++++|+||++.+|++|++||+.++....+ .+. +. ...++++.++++..+
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~-------------------~~~--~~-----~~~~~~~~~~l~~~~ 134 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHG-------------------LAK--NK-----KKLDEIVEKSLTSVG 134 (251)
T ss_pred hHHHhhhEEEEecCcccccCCHHHHHHHHHHhcC-------------------CCC--CH-----HHHHHHHHHHHHHcC
Confidence 3467899999999999999999999987521000 000 00 012344566677777
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecC
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHR 1132 (1192)
+.+.+ .+.+...+..||||||||++||||++++|+++||||||++||..+.+.+.+.|++..+++|+|+|||+
T Consensus 135 l~~~~-------~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 207 (251)
T PRK14244 135 LWEEL-------GDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS 207 (251)
T ss_pred CCchh-------hhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 75432 22344556789999999999999999999999999999999999999999999998778999999999
Q ss_pred hhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1133 LSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1133 LSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
++.+. .||+|++|++|++++.|+++++.+.
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 208 MKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99986 4999999999999999999999864
No 109
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.3e-40 Score=356.62 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=172.3
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS- 975 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s- 975 (1192)
++|++++|+.+ +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s---~~i~~G~~---~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVS---LSIEKGEF---VAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeE---EEEcCCCE---EEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHH
Confidence 78899999753 57899999 99999988 9999999999999999999999999999999999998876433
Q ss_pred ---hcccEEEEcCCCccccc-cHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 976 ---LRQAIGVVPQDTVLFNN-SIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 976 ---LR~~Ig~VPQDp~LFnG-TIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
.|++++|+||++.+|.+ |++||+.++... .+.+ ..++++.++++
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~ 126 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK------------------------------ERRERAEELLE 126 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHH------------------------------HHHHHHHHHHH
Confidence 46789999999999987 999999875321 0000 11234555666
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTI 1127 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvI 1127 (1192)
..++.+... ....+||||||||++||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|
T Consensus 127 ~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 195 (218)
T cd03255 127 RVGLGDRLN-----------HYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIV 195 (218)
T ss_pred HcCCchhhh-----------cChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 666654433 33457999999999999999999999999999999999999999999998865 79999
Q ss_pred EEecChhHHHhcCEEEEEeCCEE
Q psy13234 1128 IVAHRLSTIIHADEILVMHAGEI 1150 (1192)
Q Consensus 1128 vIAHRLSTI~~aDrIlVLe~G~I 1150 (1192)
+|||+++.+..||+|++|++|++
T Consensus 196 ~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 196 VVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred EEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999889999999999974
No 110
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=361.12 Aligned_cols=223 Identities=27% Similarity=0.387 Sum_probs=186.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCCChH
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~~i~~~ 974 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++| ++|+|.+||.++.+.+..
T Consensus 6 ~~~l~~~~~~-~~~l~~is---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 78 (250)
T PRK14247 6 IRDLKVSFGQ-VEVLDGVN---LEIPDNTI---TALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78 (250)
T ss_pred EEeeEEEECC-eeeeecce---eEEcCCCE---EEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHH
Confidence 8899999964 56899999 99999998 999999999999999999999984 699999999999988888
Q ss_pred hhcccEEEEcCCCccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 975 SLRQAIGVVPQDTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
.+|+.|+|+||++.+| +.|++||+.++..... .. ......++++.++++..++
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-----------------------~~---~~~~~~~~~~~~~l~~~~l 132 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR-----------------------LV---KSKKELQERVRWALEKAQL 132 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhcc-----------------------cc---CCHHHHHHHHHHHHHHcCC
Confidence 8999999999999755 6799999987531000 00 0000123456677788877
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecCh
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 1133 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRL 1133 (1192)
.+.+. +.+|+. ...||||||||++||||++++|+|++||||||+||+.+.+.+.+.|++..+++|+|+|||++
T Consensus 133 ~~~~~---~~~~~~----~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14247 133 WDEVK---DRLDAP----AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFP 205 (250)
T ss_pred Ccchh---hhhcCC----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 54332 223443 45799999999999999999999999999999999999999999999987789999999999
Q ss_pred hHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1134 STII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1134 STI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+.+. .||+|++|++|++++.|+++++.+.
T Consensus 206 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 206 QQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred HHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 9875 6999999999999999999999765
No 111
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.3e-40 Score=353.39 Aligned_cols=207 Identities=25% Similarity=0.403 Sum_probs=175.0
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL 976 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL 976 (1192)
++|++++|+.. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||+++.. ...++
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~s---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~ 76 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVS---FTVKPGEV---TGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEA 76 (218)
T ss_pred EEEEEEecCCCCccceeecceE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHH
Confidence 78999999753 16899999 99999988 99999999999999999999999999999999999976 45678
Q ss_pred cccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 977 RQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
|++++|+||++.+|++ |++||+.+... +.++++ .++++.++++..++
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l 126 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDE------------------------------LTARLEELADRLGM 126 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHcCC
Confidence 8999999999999995 99999976421 011111 12345556677776
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHR 1132 (1192)
.+... .....||||||||++||||++++|+++||||||++||+++.+.+.+.|++.. +++|+|+|||+
T Consensus 127 ~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 195 (218)
T cd03266 127 EELLD-----------RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI 195 (218)
T ss_pred HHHHh-----------hhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55433 3456899999999999999999999999999999999999999999999875 47999999999
Q ss_pred hhHHH-hcCEEEEEeCCEEEEEc
Q psy13234 1133 LSTII-HADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1133 LSTI~-~aDrIlVLe~G~IvE~G 1154 (1192)
++.+. .||+|++|++|++++.|
T Consensus 196 ~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 196 MQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHhcCEEEEEECCEEeecC
Confidence 99876 49999999999998865
No 112
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=366.34 Aligned_cols=223 Identities=28% Similarity=0.430 Sum_probs=188.5
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeec
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI 968 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI 968 (1192)
+.++ ++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++| ++|+|.+||+++
T Consensus 18 ~~l~--~~nl~~~~~~-~~il~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i 88 (267)
T PRK14235 18 IKMR--ARDVSVFYGE-KQALFDVD---LDIPEKTV---TAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88 (267)
T ss_pred ceEE--EEeEEEEECC-EEEEEEEE---EEEcCCCE---EEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEC
Confidence 4566 9999999964 56899999 99999988 999999999999999999999985 899999999999
Q ss_pred CC--CChHhhcccEEEEcCCCccccccHHHHHhcccc--CC--CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHH
Q psy13234 969 KT--VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARI--NA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042 (1192)
Q Consensus 969 ~~--i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~--~a--sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sde 1042 (1192)
.. .+...+|+.|+|+||++.+|++|++||+.++.. +. +.+ ..++
T Consensus 89 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~------------------------------~~~~ 138 (267)
T PRK14235 89 YDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKA------------------------------ELDE 138 (267)
T ss_pred cccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchH------------------------------HHHH
Confidence 75 456678999999999999999999999987521 00 000 0134
Q ss_pred HHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q psy13234 1043 EVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122 (1192)
Q Consensus 1043 eI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~ 1122 (1192)
++.++++..++.+.+. +........||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++..+
T Consensus 139 ~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~ 211 (267)
T PRK14235 139 IVETSLRKAGLWEEVK-------DRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ 211 (267)
T ss_pred HHHHHHHHcCCchhhh-------HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc
Confidence 4566677777755432 223455668999999999999999999999999999999999999999999999877
Q ss_pred CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1123 SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1123 grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 212 ~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 212 NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 899999999999985 5899999999999999999998753
No 113
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.1e-40 Score=365.80 Aligned_cols=218 Identities=26% Similarity=0.410 Sum_probs=192.1
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~ 973 (1192)
..++ ++|+++. ++++++++| +.+.+|+. +||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 38 ~~l~--i~nls~~---~~~vL~~vs---~~i~~Ge~---~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------- 98 (282)
T cd03291 38 NNLF--FSNLCLV---GAPVLKNIN---LKIEKGEM---LAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------- 98 (282)
T ss_pred CeEE--EEEEEEe---cccceeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------
Confidence 4466 8888885 356899999 99999988 999999999999999999999999999999998
Q ss_pred HhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
.|+|+||++.+|++|++||+.++.. ..++ ++.++++.+++
T Consensus 99 -----~i~yv~q~~~l~~~tv~enl~~~~~-~~~~----------------------------------~~~~~l~~~~l 138 (282)
T cd03291 99 -----RISFSSQFSWIMPGTIKENIIFGVS-YDEY----------------------------------RYKSVVKACQL 138 (282)
T ss_pred -----EEEEEeCcccccccCHHHHhhcccc-cCHH----------------------------------HHHHHHHHhCC
Confidence 3999999999999999999987532 1122 22334477788
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~a-L~~l~~grTvIvIAHR 1132 (1192)
.+.+..+|++++|++++.+..||||||||++||||++++|+++||||||++||+++.+.+.+. +++..+++|+|+|||+
T Consensus 139 ~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~ 218 (282)
T cd03291 139 EEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSK 218 (282)
T ss_pred HHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 889999999999999999999999999999999999999999999999999999999999875 4566678999999999
Q ss_pred hhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1133 LSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1133 LSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
++.+..||+|++|++|++++.|+++++.+....|.+.+
T Consensus 219 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 219 MEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred hHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 99999999999999999999999999987666777666
No 114
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.2e-40 Score=355.82 Aligned_cols=214 Identities=25% Similarity=0.421 Sum_probs=178.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh-cc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL-R~ 978 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++...+.... |+
T Consensus 3 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (232)
T cd03218 3 AENLSKRYGK-RKVVNGVS---LSVKQGEI---VGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75 (232)
T ss_pred EEEEEEEeCC-EEeeccce---eEecCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhc
Confidence 7889999964 56899999 99999998 99999999999999999999999999999999999988776554 57
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
.++|+||++.+|++ |++||+.++.+. .++++ .++++.+.++..++.
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~- 124 (232)
T cd03218 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKE------------------------------REEKLEELLEEFHIT- 124 (232)
T ss_pred cEEEecCCccccccCcHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHHHcCCh-
Confidence 89999999999997 999999875321 11111 112233444444443
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 1134 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLS 1134 (1192)
.........||||||||++||||++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++
T Consensus 125 ----------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 125 ----------HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred ----------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 333445568999999999999999999999999999999999999999999988754 789999999997
Q ss_pred HHH-hcCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1135 TII-HADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
.+. .||+|++|++|++++.|+++++..
T Consensus 195 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 195 ETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 664 599999999999999999999865
No 115
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=361.19 Aligned_cols=220 Identities=28% Similarity=0.422 Sum_probs=184.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCeecCCC--C
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD--V---ESGDIFIDNQNIKTV--S 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd--p---~sGsI~IDG~DI~~i--~ 972 (1192)
++|++++|+. +++++++| +.+.+|+. +||+||||||||||+++|.|+++ | ++|+|.+||+++... +
T Consensus 8 ~~~l~~~~~~-~~~l~~~s---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 8 VSDLSVYYNK-KKALNSVS---LDFYPNEI---TALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred EEeeEEEECC-eeeeeeee---EEEcCCcE---EEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 8899999964 56899999 99999888 99999999999999999999954 6 499999999998653 3
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
...+|+.|+||||++.+|+.|++||+.++... ..++ ...++++.++++.
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~ 131 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDK-----------------------------QVLDEAVEKSLKG 131 (252)
T ss_pred hHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcH-----------------------------HHHHHHHHHHHHH
Confidence 45778899999999999999999999875310 0100 0113445556677
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
.++++.+. +........||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+++|+|+||
T Consensus 132 ~~l~~~~~-------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 204 (252)
T PRK14239 132 ASIWDEVK-------DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204 (252)
T ss_pred cCCchhHH-------HHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 77654332 23345567899999999999999999999999999999999999999999999887789999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 205 RSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999875 5999999999999999999999764
No 116
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=364.04 Aligned_cols=225 Identities=26% Similarity=0.397 Sum_probs=190.3
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeec
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNI 968 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI 968 (1192)
..++ ++|++++|+ ++++++++| +++.+|+. +||+|+||||||||+++|.|+++ |++|+|.+||.++
T Consensus 19 ~~l~--~~nl~~~~~-~~~il~~vs---l~i~~Ge~---~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 19 IALS--TKDLHVYYG-KKEAIKGID---MQFEKNKI---TALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred eEEE--EeeEEEEEC-CeeeEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 3466 999999995 467899999 99999998 99999999999999999999997 5899999999998
Q ss_pred CC--CChHhhcccEEEEcCCCccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 969 KT--VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 969 ~~--i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
.. .+...+|+.|+||||++.+|+.|++|||.++... ..++ ...++++
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~-----------------------------~~~~~~~ 140 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDK-----------------------------KVLDEIV 140 (267)
T ss_pred ccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCH-----------------------------HHHHHHH
Confidence 64 4466789999999999999999999999875311 0000 0123456
Q ss_pred HHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc
Q psy13234 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR 1124 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~gr 1124 (1192)
.++++..++.+.+. +..+.....||||||||++||||++++|+++|||||||+||..+.+.+.+.|++..+++
T Consensus 141 ~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 213 (267)
T PRK14237 141 ETSLKQAALWDQVK-------DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNY 213 (267)
T ss_pred HHHHHHcCCCchhh-------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 66777777765442 33456677899999999999999999999999999999999999999999999987789
Q ss_pred eEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1125 TTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1125 TvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 214 tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 253 (267)
T PRK14237 214 TIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNP 253 (267)
T ss_pred EEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999875 59999999999999999999997643
No 117
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.3e-40 Score=380.80 Aligned_cols=214 Identities=28% Similarity=0.418 Sum_probs=183.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +.+++++| +.+.+|+. ++|+||||||||||+++|.|+.+|++|+|.+||+++.+.+.. ++.
T Consensus 7 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ 77 (353)
T TIGR03265 7 IDNIRKRFGA-FTALKDIS---LSVKKGEF---VCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRD 77 (353)
T ss_pred EEEEEEEeCC-eEEEEeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 8899999964 56789999 99999888 999999999999999999999999999999999999887754 678
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
||||+|++.||+ .|++|||+|+... .+.++ .++++.++++..++.++
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~------------------------------~~~~~~~~l~~l~L~~~ 127 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE------------------------------VAERVAELLDLVGLPGS 127 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHHHcCCCch
Confidence 999999999996 6999999987321 11111 13345566677776655
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+ ...+||||||||+||||||+++|++++||||||+||..+.+.+.+.|++..+ +.|+|+|||+++
T Consensus 128 ~~~-----------~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 128 ERK-----------YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred hhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 443 3457999999999999999999999999999999999999999999988754 689999999999
Q ss_pred HH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1135 TI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1135 TI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
.+ .-||+|++|++|++++.|+++|+.++.
T Consensus 197 ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 197 EALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 86 569999999999999999999998753
No 118
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=361.72 Aligned_cols=221 Identities=30% Similarity=0.441 Sum_probs=184.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--CC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT--VS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~~--i~ 972 (1192)
++|++++|+. +++++++| +.+.+|+. +||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+
T Consensus 7 ~~~l~~~~~~-~~~l~~~s---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 7 AKDVHLSYGN-YEALHGIS---LDFEEKEL---TALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred EEeeEEEECC-eeeeeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 8999999964 57899999 99999988 99999999999999999999997 479999999999864 44
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
...+|+.++|+||++.+|+.|++||+.++... ..+++ ..++++.++++.
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~ 130 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKE-----------------------------LIDQRVEESLKQ 130 (251)
T ss_pred HHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHH-----------------------------HHHHHHHHHHHH
Confidence 56788999999999999999999999875311 00000 112344556677
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
.++++.. ++.+ .....+||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+++|+|+||
T Consensus 131 ~~l~~~~---~~~~----~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiis 203 (251)
T PRK14251 131 AAIWKET---KDNL----DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVT 203 (251)
T ss_pred cCCCcch---HHHh----ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6664311 1122 34566899999999999999999999999999999999999999999999987789999999
Q ss_pred cChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1131 HRLSTIIH-ADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1131 HRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|+++.+.. ||+|++|++|++++.|+++++....
T Consensus 204 H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14251 204 HNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAP 237 (251)
T ss_pred CCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99998765 9999999999999999999987543
No 119
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.4e-40 Score=378.43 Aligned_cols=214 Identities=26% Similarity=0.415 Sum_probs=183.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +.+++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+|+.+.+. .+++
T Consensus 5 i~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 75 (353)
T PRK10851 5 IANIKKSFGR-TQVLNDIS---LDIPSGQM---VALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRK 75 (353)
T ss_pred EEEEEEEeCC-eEEEEEeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCC
Confidence 7889999964 46889999 99999988 99999999999999999999999999999999999987654 4678
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccC------CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARIN------ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~------asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
|+||||++.+|+ .|++|||.|+... .+.++ .++++.++++..+
T Consensus 76 i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~ 125 (353)
T PRK10851 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAA------------------------------IKAKVTQLLEMVQ 125 (353)
T ss_pred EEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHH------------------------------HHHHHHHHHHHcC
Confidence 999999999997 5999999986321 11111 1345566677777
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 1130 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIA 1130 (1192)
+.+...+.| ..||||||||+||||||+++|++|+||||||+||+++.+.+.+.|+++.+ ++|+|+||
T Consensus 126 L~~~~~~~~-----------~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vT 194 (353)
T PRK10851 126 LAHLADRYP-----------AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVT 194 (353)
T ss_pred CchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 765544433 47999999999999999999999999999999999999999999998765 68999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|+++.+. -||+|++|++|+|++.|+++|+..+.
T Consensus 195 Hd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 195 HDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999865 59999999999999999999998653
No 120
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.2e-40 Score=353.21 Aligned_cols=209 Identities=29% Similarity=0.459 Sum_probs=182.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh----Hh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----AS 975 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~----~s 975 (1192)
+.+..|+|+.++++++++| +++.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..
T Consensus 3 ~~~~~~~~~~~~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 3 VTNGYFSWGSGLATLSNIN---IRIPTGQL---TMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeEEecCCCCcceeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 5678899987678999999 99999988 99999999999999999999999999999999999876542 34
Q ss_pred hcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 976 LRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 976 LR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
.|+.++|+||++.+|+.|++|||.++.+ .++++ ..++++..++.+
T Consensus 77 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~----------------------------------~~~~~~~~~l~~ 121 (218)
T cd03290 77 NRYSVAYAAQKPWLLNATVEENITFGSP-FNKQR----------------------------------YKAVTDACSLQP 121 (218)
T ss_pred hcceEEEEcCCCccccccHHHHHhhcCc-CCHHH----------------------------------HHHHHHHhCcHH
Confidence 6788999999999999999999987642 12222 233447788888
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHc-CCceEEEEecC
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS--ALNRVC-ASRTTIIVAHR 1132 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~--aL~~l~-~grTvIvIAHR 1132 (1192)
.+..+|.|++|.++....+||||||||++||||++++|+++||||||++||.++.+.+.+ .++... +++|+|++||+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~ 201 (218)
T cd03290 122 DIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK 201 (218)
T ss_pred HHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 888899999999999999999999999999999999999999999999999999998877 444443 36899999999
Q ss_pred hhHHHhcCEEEEEeCCE
Q psy13234 1133 LSTIIHADEILVMHAGE 1149 (1192)
Q Consensus 1133 LSTI~~aDrIlVLe~G~ 1149 (1192)
++.+..||+|++|++|+
T Consensus 202 ~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 202 LQYLPHADWIIAMKDGS 218 (218)
T ss_pred hHHHhhCCEEEEecCCC
Confidence 99999999999999984
No 121
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-40 Score=367.80 Aligned_cols=217 Identities=25% Similarity=0.420 Sum_probs=187.6
Q ss_pred cccceeeecC-----CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-h
Q psy13234 900 MEEDQFGFRK-----GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-Q 973 (1192)
Q Consensus 900 fenVsFsY~~-----~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~-~ 973 (1192)
++|++++|+. ++++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+ .
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVN---LEVKKGEF---LVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccH
Confidence 8899999974 256999999 99999888 9999999999999999999999999999999999997654 3
Q ss_pred HhhcccEEEEcCCCc--cccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDTV--LFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~--LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
..+|++|+|+||+|. +|..|+.+|+.++... .+++ ..++++.++++
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~ 130 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPE------------------------------EIRERVDESLK 130 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHH------------------------------HHHHHHHHHHH
Confidence 567899999999984 7878999999876311 1111 11345667778
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTI 1127 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvI 1127 (1192)
..++.+...+.| ..||||||||++||||++++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|
T Consensus 131 ~~gL~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~til 199 (280)
T PRK13633 131 KVGMYEYRRHAP-----------HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITII 199 (280)
T ss_pred HCCCHhHhhCCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 888887765544 47999999999999999999999999999999999999999999998753 79999
Q ss_pred EEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1128 IVAHRLSTIIHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1128 vIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+|||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 200 lvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (280)
T PRK13633 200 LITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEV 235 (280)
T ss_pred EEecChHHHhcCCEEEEEECCEEEEecCHHHHhcCh
Confidence 999999999889999999999999999999997653
No 122
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-40 Score=356.22 Aligned_cols=209 Identities=28% Similarity=0.408 Sum_probs=176.5
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS- 975 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s- 975 (1192)
++|++++|+.+ +++++++| +++.+|+. ++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...
T Consensus 8 ~~~l~~~~~~~~~~~~il~~is---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVS---FSIGEGEM---MAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 88999999752 46899999 99999988 9999999999999999999999999999999999999887654
Q ss_pred --hc-ccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 976 --LR-QAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 976 --LR-~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
+| +.++|+||++.+|++ |++||+.++.. ..++++ .++++.++++
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~ 131 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAE------------------------------INSRALEMLA 131 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHH
Confidence 33 689999999999986 99999987421 111111 1234556667
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTI 1127 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvI 1127 (1192)
..++.+.. .....+||||||||++||||++.+|+|+|||||||+||+++.+.+.+.|++.. +++|+|
T Consensus 132 ~~gl~~~~-----------~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvi 200 (233)
T PRK11629 132 AVGLEHRA-----------NHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFL 200 (233)
T ss_pred HcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 76664433 23345799999999999999999999999999999999999999999999874 479999
Q ss_pred EEecChhHHHhcCEEEEEeCCEEEEEcC
Q psy13234 1128 IVAHRLSTIIHADEILVMHAGEIVERGR 1155 (1192)
Q Consensus 1128 vIAHRLSTI~~aDrIlVLe~G~IvE~Gt 1155 (1192)
+|||+++.+..+|++++|++|+|++.|.
T Consensus 201 i~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 201 VVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred EEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999998775
No 123
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-40 Score=364.18 Aligned_cols=229 Identities=23% Similarity=0.358 Sum_probs=191.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++|+.
T Consensus 14 i~~l~~~~~~-~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 14 LRNVSFRVPG-RTLLHPLS---LTFPAGKV---TGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred EeeEEEEECC-EEEEeeee---eEEcCCCE---EEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 8999999964 57899999 99999988 99999999999999999999999999999999999998888899999
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
|+|+||++.++.+ |++||+.++...... .. . ... +..++++.++++..++.+.+.
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-----~~----------~---~~~------~~~~~~~~~~l~~~~l~~~~~ 142 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHG-----AL----------G---RFG------AADREKVEEAISLVGLKPLAH 142 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccc-----cc----------c---CCC------HHHHHHHHHHHHHcCCHHHhc
Confidence 9999999877665 999999875311000 00 0 000 112455677788888876554
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI 1136 (1192)
+.| ..||||||||++||||++.+|++|||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++.+
T Consensus 143 ~~~-----------~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i 211 (265)
T PRK10575 143 RLV-----------DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMA 211 (265)
T ss_pred CCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 433 37999999999999999999999999999999999999999999998753 79999999999988
Q ss_pred H-hcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1137 I-HADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
. .||+|++|++|++++.|+++|+... ..+.+++.
T Consensus 212 ~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 246 (265)
T PRK10575 212 ARYCDYLVALRGGEMIAQGTPAELMRG-ETLEQIYG 246 (265)
T ss_pred HHhCCEEEEEECCeEEEecCHHHhcCH-HHHHHHhC
Confidence 5 5999999999999999999998753 34555553
No 124
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.6e-40 Score=351.04 Aligned_cols=204 Identities=28% Similarity=0.455 Sum_probs=173.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh---Hhh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~---~sL 976 (1192)
++|++++|+.++++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++...+. ...
T Consensus 3 ~~~l~~~~~~~~~~l~~~s---l~i~~G~~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 76 (214)
T cd03292 3 FINVTKTYPNGTAALDGIN---ISISAGEF---VFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76 (214)
T ss_pred EEEEEEEeCCCceeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 7889999975567899999 99999998 99999999999999999999999999999999999987764 357
Q ss_pred cccEEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 977 RQAIGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
|+.|+||||++.+|+ .|++||+.++... .+.++ .++++.++++..++
T Consensus 77 ~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l 126 (214)
T cd03292 77 RRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPRE------------------------------IRKRVPAALELVGL 126 (214)
T ss_pred HHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHcCC
Confidence 889999999999998 4999999875310 11111 13345566677777
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHR 1132 (1192)
.+...+.| .+||||||||++||||++++|+++|||||||+||+++.+.+.+.|++.. +++|+|+|||+
T Consensus 127 ~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~ 195 (214)
T cd03292 127 SHKHRALP-----------AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195 (214)
T ss_pred HHHhhCCh-----------hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 66544332 3799999999999999999999999999999999999999999999874 47999999999
Q ss_pred hhHHHh-cCEEEEEeCCEE
Q psy13234 1133 LSTIIH-ADEILVMHAGEI 1150 (1192)
Q Consensus 1133 LSTI~~-aDrIlVLe~G~I 1150 (1192)
++.+.+ ||+|++|++|++
T Consensus 196 ~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 196 KELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHhCCEEEEEeCCcC
Confidence 999875 899999999974
No 125
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-40 Score=361.66 Aligned_cols=220 Identities=27% Similarity=0.421 Sum_probs=184.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcC---CCC--CCceEEECCeecCCC--C
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRF---YDV--ESGDIFIDNQNIKTV--S 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl---ydp--~sGsI~IDG~DI~~i--~ 972 (1192)
++|+++.|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+ ++| ++|+|.+||+++... +
T Consensus 6 ~~~~~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 6 ARDVNFWYGD-FHALKGIS---MEIEEKSV---VAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred EEEEEEEECC-EeEEeeee---EEEeCCCE---EEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 8899999964 56889999 99999988 999999999999999999997 454 589999999999764 3
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
...+|++|+|+||++.+|+.|++||+.++... ..++ +..++++.++++.
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~ 129 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDN-----------------------------AFIRQRVEETLKG 129 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcH-----------------------------HHHHHHHHHHHHH
Confidence 46788999999999999999999999875311 0000 0123445566677
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
.++.+.+. +.....+..||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+++|+|+||
T Consensus 130 ~~l~~~~~-------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivt 202 (250)
T PRK14245 130 AALWDEVK-------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT 202 (250)
T ss_pred cCCCcchh-------hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 77654332 23345667899999999999999999999999999999999999999999999987789999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 203 HNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred CCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999885 5999999999999999999999854
No 126
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-40 Score=361.14 Aligned_cols=219 Identities=27% Similarity=0.413 Sum_probs=184.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCeecCC--CC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD--V---ESGDIFIDNQNIKT--VS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd--p---~sGsI~IDG~DI~~--i~ 972 (1192)
++|+++.|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++ | ++|+|.+||+++.. .+
T Consensus 15 i~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 15 INGMNLWYGQ-HHALKNIN---LSIPENEV---TAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred EeeEEEEECC-eeeEEeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 8999999964 46899999 99999888 99999999999999999999997 3 58999999999864 45
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCC---CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINA---SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~a---sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
...+|+.|+|+||++.+|++|++||+.++.... ++++ .++++.++++
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~------------------------------~~~~~~~~l~ 137 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKK------------------------------LQEIVEKSLK 137 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHH------------------------------HHHHHHHHHH
Confidence 567889999999999999999999998753110 1111 1233445566
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV 1129 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvI 1129 (1192)
..++.+.+. +........||||||||++||||++++|++++|||||++||.++.+.+.+.|++..+++|+|+|
T Consensus 138 ~~~l~~~~~-------~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 210 (259)
T PRK14274 138 DVALWDEVK-------DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIV 210 (259)
T ss_pred HcCCchhhh-------hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 767654432 2234556689999999999999999999999999999999999999999999998778999999
Q ss_pred ecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1130 AHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1130 AHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 211 tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 211 THNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred EcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 99999875 5999999999999999999998754
No 127
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.7e-40 Score=353.18 Aligned_cols=203 Identities=28% Similarity=0.458 Sum_probs=173.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH---hh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~---sL 976 (1192)
++|++++|+.++++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.|+.+++.. .+
T Consensus 4 ~~~l~~~~~~~~~il~~is---~~i~~G~~---~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVS---LHIRKGEF---LFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77 (214)
T ss_pred EEeeeEEeCCCceeeccee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 7889999964567899999 99999998 999999999999999999999999999999999999887643 57
Q ss_pred cccEEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 977 RQAIGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
|++++|+||++.+|. .|++||+.++... .++ ...++++.++++..++
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~------------------------------~~~~~~~~~~l~~~~l 127 (214)
T TIGR02673 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKE------------------------------REIQRRVGAALRQVGL 127 (214)
T ss_pred HhheEEEecChhhccCCcHHHHHHHHHHHcCCCH------------------------------HHHHHHHHHHHHHcCC
Confidence 889999999999996 6999999875210 010 0123456677788888
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHR 1132 (1192)
.+...+.| ..||||||||++||||++++|+++||||||++||+++.+.+.+.|++.. +++|+|+|||+
T Consensus 128 ~~~~~~~~-----------~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 196 (214)
T TIGR02673 128 EHKADAFP-----------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD 196 (214)
T ss_pred hhhhhCCh-----------hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 76654443 3799999999999999999999999999999999999999999999875 47999999999
Q ss_pred hhHHHh-cCEEEEEeCCE
Q psy13234 1133 LSTIIH-ADEILVMHAGE 1149 (1192)
Q Consensus 1133 LSTI~~-aDrIlVLe~G~ 1149 (1192)
++.+.. ||+|++|++|+
T Consensus 197 ~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 197 LSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHhcCEEEEecCCC
Confidence 999875 89999999985
No 128
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.5e-40 Score=360.59 Aligned_cols=215 Identities=27% Similarity=0.444 Sum_probs=183.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-------
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS------- 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~------- 972 (1192)
++|+++.|+. +++++++| +++.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++.+++
T Consensus 3 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 75 (252)
T TIGR03005 3 FSDVTKRFGI-LTVLDGLN---FSVAAGEK---VALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75 (252)
T ss_pred EEEEEEEeCC-eeEEeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccc
Confidence 7899999964 57899999 99999999 9999999999999999999999999999999999997653
Q ss_pred ------hHhhcccEEEEcCCCcccc-ccHHHHHhccccC---CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHH
Q psy13234 973 ------QASLRQAIGVVPQDTVLFN-NSIKFNIQYARIN---ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042 (1192)
Q Consensus 973 ------~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~---asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sde 1042 (1192)
...+|++++|+||++.+|. .|+.||+.++... .+.+ ..++
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~------------------------------~~~~ 125 (252)
T TIGR03005 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARA------------------------------EAEK 125 (252)
T ss_pred ccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHH------------------------------HHHH
Confidence 2467899999999999986 7999999875210 0111 1234
Q ss_pred HHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q psy13234 1043 EVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122 (1192)
Q Consensus 1043 eI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~ 1122 (1192)
++.++++..++.+...+ ....||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+
T Consensus 126 ~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 194 (252)
T TIGR03005 126 RAMELLDMVGLADKADH-----------MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLAS 194 (252)
T ss_pred HHHHHHHHcCChhHhhc-----------ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 45666677777655443 3457999999999999999999999999999999999999999999998754
Q ss_pred --CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1123 --SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1123 --grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 195 ~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 195 EHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred hcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 789999999999985 5999999999999999999999854
No 129
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=359.58 Aligned_cols=222 Identities=30% Similarity=0.450 Sum_probs=186.1
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecC
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIK 969 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~ 969 (1192)
.++ ++|+++.|+. +++++++| +++.+|+. ++|+||||||||||+++|.|+++| ++|+|.+||+++.
T Consensus 3 ~l~--~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 3 KIS--VKDLDLFYGD-FQALKKIN---LDIEENQV---TALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73 (250)
T ss_pred eEE--EEEEEEEECC-ceeeecce---EEEcCCCE---EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 355 8999999964 56899999 99999998 999999999999999999999863 6999999999987
Q ss_pred C--CChHhhcccEEEEcCCCccccccHHHHHhccccC--C-CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 970 T--VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARIN--A-SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 970 ~--i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~--a-sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
+ .+...+|++|+|+||++.+|+.|++||+.++... . +.+ ..++++
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~------------------------------~~~~~~ 123 (250)
T PRK14240 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKK------------------------------KLDEIV 123 (250)
T ss_pred ccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHH------------------------------HHHHHH
Confidence 5 4566789999999999999999999999875310 0 000 123445
Q ss_pred HHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc
Q psy13234 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR 1124 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~gr 1124 (1192)
.++++.+++.+.+. .........||||||||++||||++.+|+++||||||++||+++.+.+.+.|++..+++
T Consensus 124 ~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 196 (250)
T PRK14240 124 EKSLKGAALWDEVK-------DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196 (250)
T ss_pred HHHHHHcCCchhhH-------HHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 55667777654332 22344566899999999999999999999999999999999999999999999987789
Q ss_pred eEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1125 TTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1125 TvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 197 tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 197 TIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred eEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999875 5999999999999999999998754
No 130
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.6e-40 Score=355.70 Aligned_cols=215 Identities=28% Similarity=0.463 Sum_probs=181.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC--ChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i--~~~sLR 977 (1192)
++|++++|+. +++++++| +++.+|+. +||+|+||||||||+++|+|+++|++|+|.+||.++... +..++|
T Consensus 4 ~~~l~~~~~~-~~il~~~s---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (240)
T PRK09493 4 FKNVSKHFGP-TQVLHNID---LNIDQGEV---VVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIR 76 (240)
T ss_pred EEeEEEEECC-eEEeeeee---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHh
Confidence 7889999964 56899999 99999988 999999999999999999999999999999999999864 346778
Q ss_pred ccEEEEcCCCcccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 978 QAIGVVPQDTVLFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
++++|+||++.+|. .|++||+.++.. ..+.++ .++++.++++..++
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~gl 126 (240)
T PRK09493 77 QEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEE------------------------------AEKQARELLAKVGL 126 (240)
T ss_pred hceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHH------------------------------HHHHHHHHHHHcCC
Confidence 99999999999886 599999987521 011111 12344555666666
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHR 1132 (1192)
.+... .....||||||||++||||++++|++++|||||++||.++.+.+.+.|++.. +++|+|+|||+
T Consensus 127 ~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 195 (240)
T PRK09493 127 AERAH-----------HYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195 (240)
T ss_pred hHHHh-----------cChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 54433 3345899999999999999999999999999999999999999999998875 47999999999
Q ss_pred hhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1133 LSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1133 LSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
++.+. .||+|++|++|++++.|+++++++.
T Consensus 196 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 196 IGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99986 4999999999999999999998754
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-40 Score=364.22 Aligned_cols=216 Identities=23% Similarity=0.413 Sum_probs=185.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-hHhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~-~~sLR~ 978 (1192)
++|++++|+.++++++++| +++.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++...+ ...+++
T Consensus 4 ~~~l~~~~~~~~~~l~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (274)
T PRK13644 4 LENVSYSYPDGTPALENIN---LVIKKGEY---IGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77 (274)
T ss_pred EEEEEEEcCCCCceeeeeE---EEEeCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHh
Confidence 7899999975567999999 99999988 9999999999999999999999999999999999998775 467889
Q ss_pred cEEEEcCCCc--cccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDTV--LFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp~--LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
.|+|+||+|. +++.|++|||.++... .+.++. ++++.++++..++.
T Consensus 78 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~gl~ 127 (274)
T PRK13644 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEI------------------------------RKRVDRALAEIGLE 127 (274)
T ss_pred heEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHH------------------------------HHHHHHHHHHCCCH
Confidence 9999999985 6788999999876321 121111 23445566777776
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRL 1133 (1192)
+...+ ....||||||||++||||++++|+|+||||||++||+.+...+.+.|+++. +++|+|++||++
T Consensus 128 ~~~~~-----------~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~ 196 (274)
T PRK13644 128 KYRHR-----------SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL 196 (274)
T ss_pred HHhcC-----------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 55433 235899999999999999999999999999999999999999999998875 479999999999
Q ss_pred hHHHhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1134 STIIHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1134 STI~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+.+..||+|++|++|++++.|+++++...
T Consensus 197 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 197 EELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999998754
No 132
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.1e-40 Score=352.67 Aligned_cols=205 Identities=28% Similarity=0.428 Sum_probs=171.6
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS- 975 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s- 975 (1192)
++|++++|+.+ +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++.+++...
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~is---l~i~~G~~---~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVS---LSIGKGEI---VAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHH
Confidence 78899999642 46899999 99999998 9999999999999999999999999999999999998887654
Q ss_pred --hc-ccEEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 976 --LR-QAIGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 976 --LR-~~Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
+| +.|+||||++.+|+ .|++||+.++.. ..+.++ .++++.++++
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~ 127 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKE------------------------------AKERAYEMLE 127 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHH
Confidence 34 68999999999996 599999986421 001100 1234455566
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTI 1127 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvI 1127 (1192)
..++.+...+ ....||||||||++||||++++|+|||||||||+||.++.+.+.+.|+++.+ ++|+|
T Consensus 128 ~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 196 (221)
T TIGR02211 128 KVGLEHRINH-----------RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFL 196 (221)
T ss_pred HcCChhhhhC-----------ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 6666544332 3357999999999999999999999999999999999999999999998753 68999
Q ss_pred EEecChhHHHhcCEEEEEeCCEEE
Q psy13234 1128 IVAHRLSTIIHADEILVMHAGEIV 1151 (1192)
Q Consensus 1128 vIAHRLSTI~~aDrIlVLe~G~Iv 1151 (1192)
+|||+++.+..+|+|++|++|+++
T Consensus 197 ~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 197 VVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred EEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999986
No 133
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.8e-40 Score=350.49 Aligned_cols=203 Identities=33% Similarity=0.557 Sum_probs=172.2
Q ss_pred cccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|++++|+.+ +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||+++.+.+....|+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs---~~i~~G~~---~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPDGARPALDDIS---LTIKKGEF---VLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCCCCeeeecceE---EEEcCCcE---EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHh
Confidence 67888999642 56899999 99999988 9999999999999999999999999999999999999888888999
Q ss_pred cEEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
+|+|+||++ .+++.|++||+.++... .++++ .++++.+.++..++.
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~ 125 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEE------------------------------IEERVEEALELVGLE 125 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHcCcH
Confidence 999999998 46789999999875311 11111 123345556777766
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRL 1133 (1192)
+.+.+ ....||||||||++||||++++|+++|||||||+||+++.+.+.+.|++..+ ++|+|+|||++
T Consensus 126 ~~~~~-----------~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 126 GLRDR-----------SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred hhhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 55433 2357999999999999999999999999999999999999999999988754 79999999999
Q ss_pred hHHHh-cCEEEEEeCCE
Q psy13234 1134 STIIH-ADEILVMHAGE 1149 (1192)
Q Consensus 1134 STI~~-aDrIlVLe~G~ 1149 (1192)
+.+.. ||+|++|++|+
T Consensus 195 ~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 195 DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhCCEEEEEeCCC
Confidence 99987 99999999985
No 134
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.6e-40 Score=357.28 Aligned_cols=212 Identities=25% Similarity=0.410 Sum_probs=176.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-hcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s-LR~ 978 (1192)
++|+++.|+. +++++++| +.+.+|+. ++|+|+||||||||+++|+|+++|++|+|.+||.++...+... .++
T Consensus 3 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (230)
T TIGR03410 3 VSNLNVYYGQ-SHILRGVS---LEVPKGEV---TCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75 (230)
T ss_pred EEeEEEEeCC-eEEeccee---eEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHh
Confidence 7889999964 46899999 99999998 9999999999999999999999999999999999998887654 467
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
+++|+||++.+|++ |++||+.++......++ ++...++++..+
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-------------------------------~~~~~~~l~~~~----- 119 (230)
T TIGR03410 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRS-------------------------------RKIPDEIYELFP----- 119 (230)
T ss_pred CeEEeccCCcccCCCcHHHHHHHHHHhcCcch-------------------------------HHHHHHHHHHHH-----
Confidence 89999999999986 99999987632111000 001112222222
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST 1135 (1192)
+++.........||||||||++||||++++|+++||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.
T Consensus 120 -----~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 120 -----VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF 194 (230)
T ss_pred -----hHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 122223344557999999999999999999999999999999999999999999998764 6899999999999
Q ss_pred HHh-cCEEEEEeCCEEEEEcCHHHH
Q psy13234 1136 IIH-ADEILVMHAGEIVERGRHEEL 1159 (1192)
Q Consensus 1136 I~~-aDrIlVLe~G~IvE~GtheEL 1159 (1192)
+.. ||+|++|++|++++.|+++++
T Consensus 195 ~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 195 ARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHc
Confidence 885 999999999999999999997
No 135
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.3e-39 Score=356.00 Aligned_cols=215 Identities=29% Similarity=0.440 Sum_probs=179.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-------
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS------- 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~------- 972 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++...+
T Consensus 6 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 6 VKNLVKKFHG-QTVLHGID---LEVKPGEV---VAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred EeceEEEECC-eeeeccce---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhh
Confidence 8899999964 46899999 99999998 9999999999999999999999999999999999987542
Q ss_pred -hHhhcccEEEEcCCCcccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 973 -QASLRQAIGVVPQDTVLFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 973 -~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
...+|++++||||++.+|+ .|++||+.++.. ..+.++ .++++.++
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~ 128 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE------------------------------ATARAREL 128 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHH
Confidence 3567889999999999996 699999986421 011111 12233444
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceE
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTT 1126 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTv 1126 (1192)
++..++.+. .......||||||||++||||++.+|++||||||||+||.++.+.+.+.|+++.+ ++|+
T Consensus 129 l~~~gl~~~-----------~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tv 197 (250)
T PRK11264 129 LAKVGLAGK-----------ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTM 197 (250)
T ss_pred HHHcCCcch-----------hhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 555554332 2344568999999999999999999999999999999999999999999988754 7999
Q ss_pred EEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1127 IIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1127 IvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 198 i~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 198 VIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred EEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999865 999999999999999999998754
No 136
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-40 Score=364.72 Aligned_cols=217 Identities=24% Similarity=0.435 Sum_probs=180.9
Q ss_pred cccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC----
Q psy13234 900 MEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV---- 971 (1192)
Q Consensus 900 fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i---- 971 (1192)
++|++++|+.. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++...
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVN---LTIEDGSY---TAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 88999999742 46899999 99999888 999999999999999999999999999999999999764
Q ss_pred ChHhhcccEEEEcCCC--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 972 SQASLRQAIGVVPQDT--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
+...+|+.|+|+||++ .+|+.|++|||.++.. ..++++.. +.+.++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~------------------------------~~~~~~ 128 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE------------------------------ALAREK 128 (280)
T ss_pred CHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHH------------------------------HHHHHH
Confidence 3567889999999998 6889999999987521 11222221 223344
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceE
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTT 1126 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTv 1126 (1192)
++..++.+. ........||||||||++||||++++|++||||||||+||+++.+.+.+.|++..+ ++|+
T Consensus 129 l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 198 (280)
T PRK13649 129 LALVGISES----------LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTI 198 (280)
T ss_pred HHHcCCChh----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 555555321 12334567999999999999999999999999999999999999999999988754 7999
Q ss_pred EEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1127 IIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1127 IvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 199 iivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 199 VLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred EEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999885 5999999999999999999998764
No 137
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-40 Score=364.78 Aligned_cols=223 Identities=30% Similarity=0.438 Sum_probs=188.6
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecC
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIK 969 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~ 969 (1192)
.++ ++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++| ++|+|.+||.|+.
T Consensus 25 ~l~--~~nl~~~~~~-~~il~~vs---~~i~~Ge~---~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 25 ALE--VRNLNLFYGD-KQALFDIS---MRIPKNRV---TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred EEE--EEEEEEEECC-eeEeeeEE---EEEcCCCE---EEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 466 9999999964 56899999 99999888 999999999999999999999984 8999999999987
Q ss_pred C--CChHhhcccEEEEcCCCccccccHHHHHhccccCC--CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHH
Q psy13234 970 T--VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 970 ~--i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~a--sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
. .+..++|+.++|+||++.+|++|++|||.++.... ..+ +..++++.
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~-----------------------------~~~~~~~~ 146 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNR-----------------------------RVLDEAVE 146 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcH-----------------------------HHHHHHHH
Confidence 5 44567899999999999999999999998752110 000 01123455
Q ss_pred HHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCce
Q psy13234 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT 1125 (1192)
Q Consensus 1046 ~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grT 1125 (1192)
++++.+++.+.+. +..+..+..||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+++|
T Consensus 147 ~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~t 219 (272)
T PRK14236 147 RSLRGAALWDEVK-------DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYT 219 (272)
T ss_pred HHHHHcCCChhHH-------HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCe
Confidence 6667777755433 234566778999999999999999999999999999999999999999999999877899
Q ss_pred EEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1126 TIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1126 vIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 220 iiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 220 IVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred EEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence 999999999875 5999999999999999999998754
No 138
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-40 Score=360.48 Aligned_cols=221 Identities=30% Similarity=0.442 Sum_probs=184.5
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKT 970 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~~ 970 (1192)
++ ++|+++.|+. +++++++| +.+.+|+. +||+|+||||||||+++|.|+++| ++|+|.+||+++..
T Consensus 13 l~--~~~l~~~~~~-~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 13 IK--VENLNLWYGE-KQALKNVS---MQIPKNSV---TALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred EE--EeeeEEEeCC-eeeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 55 8999999963 56899999 99999988 999999999999999999999985 79999999999865
Q ss_pred CC--hHhhcccEEEEcCCCccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHH
Q psy13234 971 VS--QASLRQAIGVVPQDTVLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046 (1192)
Q Consensus 971 i~--~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~ 1046 (1192)
.+ ...+|+.++|+||++.+|+.|++||+.++.. +.+.++ .++++.+
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~------------------------------~~~~~~~ 133 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKD------------------------------LDGVVEN 133 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHH------------------------------HHHHHHH
Confidence 43 4567889999999999999999999987521 111111 1233555
Q ss_pred HHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceE
Q psy13234 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 1126 (1192)
Q Consensus 1047 AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTv 1126 (1192)
+++.+++.+.+ ++.++ .....||||||||++||||++.+|+|++|||||++||.++.+.+.+.|++..+++|+
T Consensus 134 ~l~~~~l~~~~---~~~~~----~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~ti 206 (258)
T PRK14268 134 ALRSAALWDET---SDRLK----SPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTI 206 (258)
T ss_pred HHHHcCCCcch---hhhhc----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEE
Confidence 66777664322 12233 345689999999999999999999999999999999999999999999988778999
Q ss_pred EEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1127 IIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1127 IvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 207 iivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 207 VIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred EEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999885 4999999999999999999999754
No 139
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-40 Score=362.35 Aligned_cols=217 Identities=32% Similarity=0.490 Sum_probs=186.3
Q ss_pred cccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|++++|+.. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++.+.+...+|+
T Consensus 10 i~~l~~~~~~~~~~~l~~is---l~i~~Ge~---~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVS---FNIPKGQW---TSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred EEEEEEEcCCCCCcceeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 89999999753 46899999 99999998 9999999999999999999999999999999999999888889999
Q ss_pred cEEEEcCCCc--cccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDTV--LFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp~--LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
+|+|+||+|. +++.|+++|+.++... .+.++ .++++.++++..++.
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~ 133 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDE------------------------------MHRRVSEALKQVDML 133 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHH------------------------------HHHHHHHHHHHcCCc
Confidence 9999999984 5567899999876321 11111 123455666777775
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecC
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 1132 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHR 1132 (1192)
+... ....+||||||||++||||++.+|+++||||||++||+++.+.+.+.|++..+ ++|+|+|||+
T Consensus 134 ~~~~-----------~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~ 202 (269)
T PRK13648 134 ERAD-----------YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202 (269)
T ss_pred hhhh-----------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5432 23457999999999999999999999999999999999999999999998753 6899999999
Q ss_pred hhHHHhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1133 LSTIIHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1133 LSTI~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
++.+..||+|++|++|++++.|+++++....
T Consensus 203 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 203 LSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred chHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 9999889999999999999999999987653
No 140
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=8.5e-40 Score=373.16 Aligned_cols=226 Identities=26% Similarity=0.376 Sum_probs=185.1
Q ss_pred cccceeeecC------------CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q psy13234 900 MEEDQFGFRK------------GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN 967 (1192)
Q Consensus 900 fenVsFsY~~------------~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~D 967 (1192)
++|++++|+. ...+++++| +.+.+|+. +||||+||||||||+++|+|+++|++|+|.+||.|
T Consensus 11 v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vs---l~i~~Ge~---~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 11 VADLKVHFDIKDGKQWFWQPPKTLKAVDGVT---LRLYEGET---LGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred EeCeEEEECCCCccccccccCCceEEEeeEE---EEEcCCCE---EEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 7888888853 135788888 99999888 99999999999999999999999999999999999
Q ss_pred cCCCChHh---hcccEEEEcCCC--ccc-cccHHHHHhccc----cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhh
Q psy13234 968 IKTVSQAS---LRQAIGVVPQDT--VLF-NNSIKFNIQYAR----INASEEEVKEAATSADIHERILSFPDGYDTQYARI 1037 (1192)
Q Consensus 968 I~~i~~~s---LR~~Ig~VPQDp--~LF-nGTIreNI~~G~----~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~ 1037 (1192)
+.+.+.++ +|++|+||+||| .|| ..||.|||.++- ++.+.++.
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~--------------------------- 137 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEV--------------------------- 137 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHH---------------------------
Confidence 99887654 678999999998 577 479999997531 11222222
Q ss_pred cccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy13234 1038 NASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL 1117 (1192)
Q Consensus 1038 ~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL 1117 (1192)
++.+.++++..++.+.. + ......||||||||++||||++.+|++||+|||||+||..+.+.|.+.|
T Consensus 138 ---~~~~~~~l~~vgl~~~~------~----~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL 204 (331)
T PRK15079 138 ---KDRVKAMMLKVGLLPNL------I----NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL 204 (331)
T ss_pred ---HHHHHHHHHHcCCChHH------h----cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 23344566777763211 1 2234579999999999999999999999999999999999999999999
Q ss_pred HHHcC--CceEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC-cHHHH-HHH
Q psy13234 1118 NRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERN-GVYAS-MWI 1171 (1192)
Q Consensus 1118 ~~l~~--grTvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~-L~~ 1171 (1192)
+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|+.++++++. ..|.+ ++.
T Consensus 205 ~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~py~~~l~~ 263 (331)
T PRK15079 205 QQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMS 263 (331)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCCHHHHHHHh
Confidence 88754 7899999999999975 9999999999999999999998653 45655 443
No 141
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.7e-40 Score=351.02 Aligned_cols=205 Identities=28% Similarity=0.461 Sum_probs=173.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++...+.. +++
T Consensus 3 ~~~l~~~~~~-~~~l~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~ 73 (213)
T cd03301 3 LENVTKRFGN-VTALDDLN---LDIADGEF---VVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRD 73 (213)
T ss_pred EEeeEEEECC-eeeeeceE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cce
Confidence 7889999965 46899999 99999998 999999999999999999999999999999999999876543 578
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+|. .|++||+.++... .++++ .++++.++++..++.+.
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~~~ 123 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE------------------------------IDERVREVAELLQIEHL 123 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHHHcCCHHH
Confidence 999999999996 6999999875210 11111 12345566677777665
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+. ...||||||||++||||++++|++++|||||++||+++.+.+.+.|++..+ ++|+|+|||+++
T Consensus 124 ~~~~-----------~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 124 LDRK-----------PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred HhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4433 347999999999999999999999999999999999999999999998753 799999999999
Q ss_pred HHHh-cCEEEEEeCCEEEEEc
Q psy13234 1135 TIIH-ADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1135 TI~~-aDrIlVLe~G~IvE~G 1154 (1192)
.+.. ||+|++|++|++++.|
T Consensus 193 ~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 193 EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHhcCeEEEEECCEEEecC
Confidence 8765 9999999999999876
No 142
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.2e-40 Score=349.78 Aligned_cols=203 Identities=23% Similarity=0.365 Sum_probs=173.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+.+|++|+|.+||.++.+. ...|++
T Consensus 3 ~~~l~~~~~~-~~~l~~~~---~~i~~G~~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~ 73 (208)
T cd03268 3 TNDLTKTYGK-KRVLDDIS---LHVKKGEI---YGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRR 73 (208)
T ss_pred EEEEEEEECC-eEeEeeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhh
Confidence 7889999954 57899999 99999988 999999999999999999999999999999999998765 567889
Q ss_pred EEEEcCCCccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|+||++.+| +.|++||+.++.... ..+++++.++++..++.+...
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~ 121 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLL--------------------------------GIRKKRIDEVLDVVGLKDSAK 121 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhc--------------------------------CCcHHHHHHHHHHcCCHHHHh
Confidence 99999999888 479999998652100 011334555567777766543
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~ 1137 (1192)
+ ....||||||||++||||++++|++++|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.
T Consensus 122 ~-----------~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 190 (208)
T cd03268 122 K-----------KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ 190 (208)
T ss_pred h-----------hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 2 245799999999999999999999999999999999999999999998875 4799999999999886
Q ss_pred -hcCEEEEEeCCEEEEEc
Q psy13234 1138 -HADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1138 -~aDrIlVLe~G~IvE~G 1154 (1192)
-||+|++|++|++++.|
T Consensus 191 ~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 191 KVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCEEEEEECCEEEecC
Confidence 49999999999999865
No 143
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-40 Score=378.81 Aligned_cols=213 Identities=31% Similarity=0.492 Sum_probs=182.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +.+++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++
T Consensus 6 i~~l~~~~~~-~~vl~~vs---l~i~~Ge~---~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~ 76 (369)
T PRK11000 6 LRNVTKAYGD-VVISKDIN---LDIHEGEF---VVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERG 76 (369)
T ss_pred EEEEEEEeCC-eEEEeeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCC
Confidence 8899999964 46889999 99999888 999999999999999999999999999999999999877653 578
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
|+||||++.+|+. |++|||.|+.. ..+.++ .++++.++++..++.+.
T Consensus 77 i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~------------------------------~~~~~~~~l~~lgL~~~ 126 (369)
T PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEE------------------------------INQRVNQVAEVLQLAHL 126 (369)
T ss_pred EEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHH------------------------------HHHHHHHHHHHcCChhh
Confidence 9999999999975 99999998632 111111 13455667788887665
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+.| ..||||||||++|||||+++|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++
T Consensus 127 ~~~~~-----------~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 127 LDRKP-----------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred hcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 54433 47999999999999999999999999999999999999999999988754 789999999999
Q ss_pred HHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1135 TII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.+. .||+|++|++|++++.|+++|+..+
T Consensus 196 ~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 196 EAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 775 5999999999999999999999864
No 144
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-40 Score=353.79 Aligned_cols=205 Identities=27% Similarity=0.408 Sum_probs=174.2
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL 976 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL 976 (1192)
++|++++|+.. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++.. .
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs---~~i~~G~~---~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~ 71 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDIS---LSVEEGEF---VALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----P 71 (220)
T ss_pred EEEEEEEcCCCCcceEEEecee---EEEeCCcE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----c
Confidence 78899999752 57899999 99999998 99999999999999999999999999999999999863 4
Q ss_pred cccEEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 977 RQAIGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
+++++||||++.+|+ .|++||+.++... .+. +..++++.++++..++
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~------------------------------~~~~~~~~~~l~~~~l 121 (220)
T cd03293 72 GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPK------------------------------AEARERAEELLELVGL 121 (220)
T ss_pred cCcEEEEecccccccCCCHHHHHHHHHHHcCCCH------------------------------HHHHHHHHHHHHHcCC
Confidence 678999999999998 6999999875210 010 0123455667788777
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEec
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAH 1131 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAH 1131 (1192)
.+...+.| .+||||||||++||||++++|+++||||||++||+++.+.+.+.|++.. .++|+|+|||
T Consensus 122 ~~~~~~~~-----------~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH 190 (220)
T cd03293 122 SGFENAYP-----------HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH 190 (220)
T ss_pred hhhhhCCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 66554443 4799999999999999999999999999999999999999999999874 3799999999
Q ss_pred ChhHHH-hcCEEEEEe--CCEEEEEcCH
Q psy13234 1132 RLSTII-HADEILVMH--AGEIVERGRH 1156 (1192)
Q Consensus 1132 RLSTI~-~aDrIlVLe--~G~IvE~Gth 1156 (1192)
+++.+. .||+|++|+ +|++++.++.
T Consensus 191 ~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 191 DIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999775 599999999 7999998864
No 145
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=364.18 Aligned_cols=216 Identities=25% Similarity=0.415 Sum_probs=188.3
Q ss_pred cccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCeecCCCChHh
Q psy13234 900 MEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVES---GDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 900 fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~s---GsI~IDG~DI~~i~~~s 975 (1192)
++|++++|+. .+++++++| +.+.+|+. +||+||||||||||+++|+|+++|++ |+|.+||.++.+.+...
T Consensus 8 i~~l~~~~~~~~~~~l~~v~---l~i~~Ge~---~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDIS---FSIPRGSW---TALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred EEEEEEEcCCCCccceeeEE---EEEcCCCE---EEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 8899999974 356899999 99999988 99999999999999999999999998 89999999998888888
Q ss_pred hcccEEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 976 LRQAIGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 976 LR~~Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
+|++|||+||++ .+++.|+.|||.++... .++++. ++++.++++..
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~ 131 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEM------------------------------IKIVRDVLADV 131 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHH------------------------------HHHHHHHHHHC
Confidence 899999999998 47789999999875321 222221 23455667888
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEE
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV 1129 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvI 1129 (1192)
++.+...+.| .+||||||||++||||++.+|++|||||||++||..+.+.+.+.|+++.+ ++|+|++
T Consensus 132 ~L~~~~~~~~-----------~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~ 200 (282)
T PRK13640 132 GMLDYIDSEP-----------ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI 200 (282)
T ss_pred CChhHhcCCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 8877655544 48999999999999999999999999999999999999999999988754 7899999
Q ss_pred ecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1130 AHRLSTIIHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1130 AHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 201 tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 201 THDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred ecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998753
No 146
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=7e-40 Score=377.73 Aligned_cols=218 Identities=24% Similarity=0.434 Sum_probs=186.3
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCC--ceEEECCeecCCC
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVES--GDIFIDNQNIKTV 971 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~s--GsI~IDG~DI~~i 971 (1192)
++++ +++++++|.. +.+++++| +.+.+|+. ++|+||||||||||+++|.|+++|++ |+|.+||.++.+.
T Consensus 4 ~~l~--~~~l~~~~~~-~~~l~~vs---l~i~~Ge~---~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 4 GGIR--IDHLRVAYGA-NTVLDDLS---LEIEAGEL---LALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA 74 (362)
T ss_pred eEEE--EEEEEEEECC-eEEEeeeE---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC
Confidence 3466 8999999964 46899999 99999888 99999999999999999999999999 9999999999876
Q ss_pred ChHhhcccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHH
Q psy13234 972 SQASLRQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL 1048 (1192)
+. .++.|+||+|++.||.. |++|||.|+.. ..+++++ ++++.+++
T Consensus 75 ~~--~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~------------------------------~~~v~~~l 122 (362)
T TIGR03258 75 PP--HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADI------------------------------AERVADAL 122 (362)
T ss_pred CH--HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHH------------------------------HHHHHHHH
Confidence 65 35789999999999975 99999998631 1121111 23455667
Q ss_pred HHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---Cce
Q psy13234 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA---SRT 1125 (1192)
Q Consensus 1049 ~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~---grT 1125 (1192)
+..++.+...+.| .+||||||||+||||||+++|++|+||||||+||+.+.+.+.+.|+++.+ +.|
T Consensus 123 ~~~gL~~~~~~~~-----------~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~t 191 (362)
T TIGR03258 123 KLVGLGDAAAHLP-----------AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191 (362)
T ss_pred HhcCCCchhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 8888876655554 37999999999999999999999999999999999999999999987754 689
Q ss_pred EEEEecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1126 TIIVAHRLSTI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1126 vIvIAHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+|+|||+++.+ .-||+|++|++|++++.|+++|+.++.
T Consensus 192 il~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 192 ILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999986 459999999999999999999998753
No 147
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-40 Score=358.33 Aligned_cols=228 Identities=29% Similarity=0.463 Sum_probs=188.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCC--C
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTV--S 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~~i--~ 972 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|+|+++| ++|+|.+||.++... +
T Consensus 6 ~~~l~~~~~~-~~~l~~i~---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~ 78 (250)
T PRK14262 6 IENFSAYYGE-KKAVKNVT---MKIFKNQI---TAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78 (250)
T ss_pred EEeeEEEeCC-ceeEeeee---EeecCCCE---EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhh
Confidence 8899999964 57899999 99999988 999999999999999999999984 899999999998753 3
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
...+|++++|+||++.+|+.|++||+.++... ...+ +..++++.++++.
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~ 129 (250)
T PRK14262 79 VTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSK-----------------------------HKLDRIVEESLKK 129 (250)
T ss_pred HHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcH-----------------------------HHHHHHHHHHHHH
Confidence 45678999999999999999999999875310 0000 0123445566677
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
.++++.+. +........||||||||++||||++++|+|++|||||++||..+.+.+.+.|++..+++|+|+||
T Consensus 130 ~~l~~~~~-------~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~s 202 (250)
T PRK14262 130 AALWDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVT 202 (250)
T ss_pred cCCCchhH-------HHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 77654332 23455677899999999999999999999999999999999999999999999987789999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHHH
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLERN-GVYASMW 1170 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L~ 1170 (1192)
|+++.+. .||+|++|++|++++.|+++++.+.. ..|.+-+
T Consensus 203 H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 244 (250)
T PRK14262 203 HNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEEY 244 (250)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCCCChHHHHH
Confidence 9999764 59999999999999999999998653 2344443
No 148
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-40 Score=356.92 Aligned_cols=215 Identities=27% Similarity=0.395 Sum_probs=179.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC------CCCh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK------TVSQ 973 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~------~i~~ 973 (1192)
++|++++|+. +++++++| +++.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++. ..+.
T Consensus 5 ~~~l~~~~~~-~~il~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 5 LNGINCFYGA-HQALFDIT---LDCPQGET---LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEeeEEEECC-eeeEeeee---eEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhH
Confidence 8899999964 57899999 99999988 9999999999999999999999999999999999873 2234
Q ss_pred HhhcccEEEEcCCCccccc-cHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDTVLFNN-SIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
...|++|+|+||++.+|++ |++|||.++.. +.++++ ..+++.+.++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~------------------------------~~~~~~~~l~ 127 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQ------------------------------ALARAEKLLE 127 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHH
Confidence 6778999999999999975 99999975311 011111 1233445556
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTII 1128 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIv 1128 (1192)
..++.+...+. ..+||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|+
T Consensus 128 ~~gl~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 196 (242)
T PRK11124 128 RLRLKPYADRF-----------PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVI 196 (242)
T ss_pred HcCChhhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 66665544333 358999999999999999999999999999999999999999999998754 799999
Q ss_pred EecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1129 VAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1129 IAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 197 ~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 231 (242)
T PRK11124 197 VTHEVEVARKTASRVVYMENGHIVEQGDASCFTQP 231 (242)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCc
Confidence 9999999864 999999999999999999987643
No 149
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.8e-40 Score=377.97 Aligned_cols=216 Identities=31% Similarity=0.469 Sum_probs=186.7
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s 975 (1192)
++ ++|++++|.. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.+
T Consensus 15 L~--l~~l~~~~~~-~~~l~~vs---l~i~~Ge~---~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~- 84 (375)
T PRK09452 15 VE--LRGISKSFDG-KEVISNLD---LTINNGEF---LTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE- 84 (375)
T ss_pred EE--EEEEEEEECC-eEEEeeeE---EEEeCCCE---EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH-
Confidence 55 8899999964 56788998 99999888 999999999999999999999999999999999999887764
Q ss_pred hcccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 976 LRQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 976 LR~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
++.|+||+|++.||+. |++|||.|+.. ..++++. ++++.++++..+
T Consensus 85 -~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~------------------------------~~~~~~~l~~~~ 133 (375)
T PRK09452 85 -NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEI------------------------------TPRVMEALRMVQ 133 (375)
T ss_pred -HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHH------------------------------HHHHHHHHHHcC
Confidence 4789999999999965 99999998631 1111111 234556678888
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 1130 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIA 1130 (1192)
+.+...+.| ..||||||||+||||||+++|++|+||||||+||.++.+.+.+.|+++.+ +.|+|+||
T Consensus 134 l~~~~~~~p-----------~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vT 202 (375)
T PRK09452 134 LEEFAQRKP-----------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVT 202 (375)
T ss_pred CchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 887776665 37999999999999999999999999999999999999999999998764 69999999
Q ss_pred cChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1131 HRLSTI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1131 HRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|+++.+ ..||+|++|++|+|++.|+++|+..+.
T Consensus 203 Hd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 203 HDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999976 569999999999999999999998753
No 150
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.1e-40 Score=356.46 Aligned_cols=224 Identities=18% Similarity=0.340 Sum_probs=182.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh-cc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL-R~ 978 (1192)
++|+++.|+. +++++++| +++.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+
T Consensus 5 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T TIGR03411 5 LEGLSVSFDG-FKALNDLS---LYVDPGEL---RVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77 (242)
T ss_pred EEeeEEEcCC-eEEeeeee---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhc
Confidence 7899999964 56899999 99999988 99999999999999999999999999999999999988776543 56
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
.++|+||++.+|++ |++||+.++... . ..+.... + +.. .+..++++.++++..++.+.
T Consensus 78 ~i~~~~q~~~~~~~~tv~~nl~~~~~~-~-~~~~~~~-----~--------~~~-----~~~~~~~~~~~l~~~~l~~~- 136 (242)
T TIGR03411 78 GIGRKFQKPTVFENLTVFENLELALPR-D-KSVFASL-----F--------FRL-----SAEEKDRIEEVLETIGLADE- 136 (242)
T ss_pred CeeEeccccccCCCCCHHHHHHHhhhc-c-ccccccc-----c--------ccc-----HHHHHHHHHHHHHHcCCchh-
Confidence 79999999999997 999999875320 0 0000000 0 000 00123345555565555332
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~ 1137 (1192)
.......||||||||++||||++++|++++||||||+||+++.+.+.+.|+++.+++|+|++||+++.+.
T Consensus 137 ----------~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 137 ----------ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVR 206 (242)
T ss_pred ----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 2344558999999999999999999999999999999999999999999999877899999999999986
Q ss_pred h-cCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1138 H-ADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1138 ~-aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
+ ||+|++|++|++++.|+++++..
T Consensus 207 ~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 207 SIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhCCEEEEEECCeEEeeCCHHHHhc
Confidence 5 99999999999999999999875
No 151
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-40 Score=351.44 Aligned_cols=211 Identities=22% Similarity=0.351 Sum_probs=178.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++... ...+|++
T Consensus 3 ~~~~~~~~~~-~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~ 74 (220)
T cd03265 3 VENLVKKYGD-FEAVRGVS---FRVRRGEI---FGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRR 74 (220)
T ss_pred EEEEEEEECC-EEeeecee---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhc
Confidence 7889999964 56899999 99999988 999999999999999999999999999999999998763 3567889
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+|++ |++||+.++.. ..+.+ ..++++.++++..++.+.
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~l~~~ 124 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGA------------------------------ERRERIDELLDFVGLLEA 124 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHH------------------------------HHHHHHHHHHHHcCCHHH
Confidence 9999999999985 99999986421 01111 123455667788888765
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+. + ..||||||||++||||++.+|+++||||||++||+++.+.+.+.|++..+ ++|+|+|||+++
T Consensus 125 ~~~~-------~----~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 125 ADRL-------V----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred hhCC-------h----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4332 2 37999999999999999999999999999999999999999999988753 689999999999
Q ss_pred HHHh-cCEEEEEeCCEEEEEcCHHHH
Q psy13234 1135 TIIH-ADEILVMHAGEIVERGRHEEL 1159 (1192)
Q Consensus 1135 TI~~-aDrIlVLe~G~IvE~GtheEL 1159 (1192)
.+.. ||+|++|++|++++.|+++++
T Consensus 194 ~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 194 EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 8864 999999999999999998874
No 152
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=356.55 Aligned_cols=219 Identities=31% Similarity=0.480 Sum_probs=185.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCeecCCC--C
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKTV--S 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~-----sGsI~IDG~DI~~i--~ 972 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|+ +|+|.+||.++.+. +
T Consensus 7 ~~~l~~~~~~-~~il~~~s---~~i~~G~~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 7 IRGVNFFYHK-HQVLKNIN---MDFPERQI---TAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred EEEEEEEECC-eeEecceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 8899999964 56899999 99999998 9999999999999999999999997 69999999998753 4
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccC--CC-HHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARIN--AS-EEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~--as-dEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
...+|+.++||||++.+|+.|++|||.++... .. ++++ ++++.++++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~------------------------------~~~~~~~l~ 129 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL------------------------------DEVVEKSLR 129 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHH------------------------------HHHHHHHHH
Confidence 56789999999999999999999999875311 00 1111 223444556
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV 1129 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvI 1129 (1192)
..++.+.+. +.....+.+||||||||++||||++.+|+++||||||++||.++.+.+.+.|++..+++|+|+|
T Consensus 130 ~~~l~~~l~-------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiliv 202 (251)
T PRK14249 130 QAALWDEVK-------DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIV 202 (251)
T ss_pred HhCCchhhh-------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 666654332 2345667799999999999999999999999999999999999999999999988778999999
Q ss_pred ecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1130 AHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1130 AHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
||+++.+.+ ||+|++|++|++++.|+++++...
T Consensus 203 sh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 203 THNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred eCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence 999999876 799999999999999999998754
No 153
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=362.02 Aligned_cols=222 Identities=26% Similarity=0.407 Sum_probs=185.2
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT 970 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~~ 970 (1192)
++ ++|+++.|+. +++++++| +++.+|+. +||+|+||||||||+++|.|+++ |++|+|.+||.++..
T Consensus 25 l~--~~~l~~~~~~-~~il~~vs---l~i~~Ge~---~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 25 FD--TQNLNLWYGE-DHALKNIN---LDIHENEV---TAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred EE--EeeeEEEECC-cceeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 55 8999999964 46899999 99999888 99999999999999999999987 699999999999853
Q ss_pred --CChHhhcccEEEEcCCCccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHH
Q psy13234 971 --VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046 (1192)
Q Consensus 971 --i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~ 1046 (1192)
.+...+|+.|+|+||++.+|+.|++|||.++.. +.++++. .++.+.+
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~-----------------------------~~~~~~~ 146 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKT-----------------------------LDEIVEK 146 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHH-----------------------------HHHHHHH
Confidence 456678999999999999999999999987531 1111110 1122344
Q ss_pred HHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceE
Q psy13234 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 1126 (1192)
Q Consensus 1047 AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTv 1126 (1192)
+++..++.+.+ +......+..||||||||++||||++++|+++||||||++||+++.+.+.+.|+++.+++|+
T Consensus 147 ~l~~~~~~~~l-------~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ti 219 (271)
T PRK14238 147 SLRGAAIWDEL-------KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSI 219 (271)
T ss_pred HHHHcCCcchH-------HHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEE
Confidence 45555443222 23345566789999999999999999999999999999999999999999999998878999
Q ss_pred EEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1127 IIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1127 IvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 220 iivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 220 IIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred EEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 99999999976 5999999999999999999999754
No 154
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.4e-39 Score=349.99 Aligned_cols=206 Identities=25% Similarity=0.448 Sum_probs=173.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh---h
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---L 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s---L 976 (1192)
++|+++.|+.++++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++.+++... +
T Consensus 4 ~~~l~~~~~~~~~~l~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 77 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVT---FHMRPGEM---AFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77 (222)
T ss_pred EEeeEEEecCCCeEEeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHH
Confidence 7899999954567899999 99999999 9999999999999999999999999999999999998876543 6
Q ss_pred cccEEEEcCCCcc-ccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 977 RQAIGVVPQDTVL-FNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 977 R~~Ig~VPQDp~L-FnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
|+.++|+||++.+ ++.|++||+.++.. +.++++. ++++.++++..++
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~l 127 (222)
T PRK10908 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDI------------------------------RRRVSAALDKVGL 127 (222)
T ss_pred HhheEEEecCccccccccHHHHHHhHHHhcCCCHHHH------------------------------HHHHHHHHHHcCC
Confidence 8899999999987 56799999987521 1122211 2234556677777
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHR 1132 (1192)
.+...+. ...||||||||++||||++++|+++||||||++||+++.+.+.+.|++.. +++|+|+|||+
T Consensus 128 ~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (222)
T PRK10908 128 LDKAKNF-----------PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHD 196 (222)
T ss_pred hhhhhCC-----------chhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6654432 35799999999999999999999999999999999999999999999874 46899999999
Q ss_pred hhHHHh-cCEEEEEeCCEEEE
Q psy13234 1133 LSTIIH-ADEILVMHAGEIVE 1152 (1192)
Q Consensus 1133 LSTI~~-aDrIlVLe~G~IvE 1152 (1192)
++.+.. ||+|++|++|+++.
T Consensus 197 ~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 197 IGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHhCCEEEEEECCEEcc
Confidence 999876 89999999999863
No 155
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=356.43 Aligned_cols=219 Identities=27% Similarity=0.430 Sum_probs=181.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCeecCC--CC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKT--VS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~-----sGsI~IDG~DI~~--i~ 972 (1192)
++|++++|+ ++++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 7 ~~~l~~~~~-~~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T PRK14272 7 AQDVNIYYG-DKQAVKNVN---LDVQRGTV---NALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79 (252)
T ss_pred EeeeEEEEC-CEEeeccce---EEEcCCCE---EEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccC
Confidence 889999996 357899999 99999998 9999999999999999999999875 8999999999975 34
Q ss_pred hHhhcccEEEEcCCCccccc-cHHHHHhccccC--C-CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNN-SIKFNIQYARIN--A-SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~~--a-sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL 1048 (1192)
...+|+.|+|+||++.+|++ |+.||+.++... . .+++..+ ...+.+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~------------------------------~~~~~l 129 (252)
T PRK14272 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLME------------------------------VAERSL 129 (252)
T ss_pred HHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHH------------------------------HHHHHH
Confidence 56788999999999999985 999999865321 1 1222222 222333
Q ss_pred HHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEE
Q psy13234 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 1128 (1192)
Q Consensus 1049 ~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIv 1128 (1192)
+..++.+.+ ++.++++ ..+||||||||++||||++++|+++||||||++||..+.+.+.+.|++..+++|+|+
T Consensus 130 ~~~~l~~~l---~~~~~~~----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 202 (252)
T PRK14272 130 RGAALWDEV---KDRLKTP----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIII 202 (252)
T ss_pred HHcCcchhh---hhhhcCC----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 444443322 2334444 457999999999999999999999999999999999999999999999877899999
Q ss_pred EecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1129 VAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1129 IAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+||+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 203 ~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 203 VTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999875 899999999999999999999865
No 156
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=360.04 Aligned_cols=216 Identities=25% Similarity=0.360 Sum_probs=181.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC--CCChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~--~i~~~sLR 977 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++. +.+...+|
T Consensus 4 ~~~l~~~~~~-~~il~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 76 (271)
T PRK13638 4 TSDLWFRYQD-EPVLKGLN---LDFSLSPV---TGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR 76 (271)
T ss_pred EEEEEEEcCC-cccccceE---EEEcCCCE---EEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHH
Confidence 7899999964 56899999 99999988 9999999999999999999999999999999999985 34456788
Q ss_pred ccEEEEcCCCc--cccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 978 QAIGVVPQDTV--LFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 978 ~~Ig~VPQDp~--LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
++|+||||++. +|..|+.+|+.++.. +.++++. .+++.++++..++
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~l 126 (271)
T PRK13638 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI------------------------------TRRVDEALTLVDA 126 (271)
T ss_pred hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHH------------------------------HHHHHHHHHHcCC
Confidence 99999999986 678899999986421 1122111 2334556677777
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHR 1132 (1192)
.+.. ++ ....||||||||++||||++.+|++||||||||+||+++.+.+.+.|++.. +++|+|+|||+
T Consensus 127 ~~~~-------~~----~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 195 (271)
T PRK13638 127 QHFR-------HQ----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD 195 (271)
T ss_pred HhHh-------cC----CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6543 22 245799999999999999999999999999999999999999999998875 47899999999
Q ss_pred hhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1133 LSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1133 LSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
++.+. .||+|++|++|++++.|+++++....
T Consensus 196 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 196 IDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 99985 59999999999999999999987653
No 157
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9.7e-40 Score=359.21 Aligned_cols=220 Identities=28% Similarity=0.447 Sum_probs=184.3
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC--
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV-- 971 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i-- 971 (1192)
+.++ ++|+++.|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 4 ~~l~--~~~l~~~~~~-~~~l~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 4 NKLN--VIDLHKRYGE-HEVLKGVS---LQANAGDV---ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRD 74 (257)
T ss_pred ccEE--EeeeEEEECC-EEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccc
Confidence 4466 8999999964 56899999 99999888 999999999999999999999999999999999998642
Q ss_pred -----------ChHhhcccEEEEcCCCccccc-cHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhh
Q psy13234 972 -----------SQASLRQAIGVVPQDTVLFNN-SIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYAR 1036 (1192)
Q Consensus 972 -----------~~~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~ 1036 (1192)
....+|+.++||||++.+|+. |++||+.++.. ..+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~---------------------------- 126 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQ---------------------------- 126 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHH----------------------------
Confidence 135678899999999999984 99999986421 01111
Q ss_pred hcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy13234 1037 INASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA 1116 (1192)
Q Consensus 1037 ~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~a 1116 (1192)
..++++.++++..++.+... ......||||||||++||||++++|+++||||||++||+++.+.+.+.
T Consensus 127 --~~~~~~~~~l~~~gl~~~~~----------~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 194 (257)
T PRK10619 127 --EARERAVKYLAKVGIDERAQ----------GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI 194 (257)
T ss_pred --HHHHHHHHHHHHcCCChhhh----------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 11234555667666654321 234568999999999999999999999999999999999999999999
Q ss_pred HHHHcC-CceEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1117 LNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1117 L~~l~~-grTvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 195 l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 242 (257)
T PRK10619 195 MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242 (257)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhC
Confidence 998754 7999999999999985 999999999999999999998754
No 158
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=368.02 Aligned_cols=216 Identities=24% Similarity=0.388 Sum_probs=181.5
Q ss_pred cccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC-----
Q psy13234 900 MEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT----- 970 (1192)
Q Consensus 900 fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~----- 970 (1192)
++|++++|+.+ .++++++| +.+.+|+. +||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs---l~i~~Ge~---v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVS---VEINQGEF---IAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEECCCCCccccceeeeE---EEEeCCCE---EEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccc
Confidence 88999999753 25899999 99999888 99999999999999999999999999999999987632
Q ss_pred -------------------CChHhhcccEEEEcCCC--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCC
Q psy13234 971 -------------------VSQASLRQAIGVVPQDT--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFP 1027 (1192)
Q Consensus 971 -------------------i~~~sLR~~Ig~VPQDp--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~p 1027 (1192)
.+...+|++||||||+| .+|+.|++|||.|+.. +.+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~----------------- 141 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEA----------------- 141 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHH-----------------
Confidence 13467889999999986 7899999999998742 1222222
Q ss_pred CCCchhhhhhcccHHHHHHHHHHcChH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q psy13234 1028 DGYDTQYARINASEEEVKEAATSADIH-ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106 (1192)
Q Consensus 1028 d~~~~~~~~~~~sdeeI~~AL~~A~Lh-d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD 1106 (1192)
++++.++++..++. +.. ......||||||||++|||||+.+|++||||||||+||
T Consensus 142 -------------~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD 197 (305)
T PRK13651 142 -------------KKRAAKYIELVGLDESYL-----------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLD 197 (305)
T ss_pred -------------HHHHHHHHHHcCCChhhh-----------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 23345566777764 332 23445899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCceEEEEecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1107 TKTERNIQSALNRVC-ASRTTIIVAHRLSTI-IHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1107 ~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+.+.+.+.+.|+++. +++|+|+|||+++.+ ..||+|++|++|++++.|+.+|+.+.
T Consensus 198 ~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 198 PQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999998874 479999999999976 56999999999999999999998765
No 159
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-40 Score=374.78 Aligned_cols=214 Identities=30% Similarity=0.481 Sum_probs=188.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++.+|. +..+++++| +.+.+|+. +++.|||||||||++|+|.||.+|++|+|.+||+|+.+++++ ++.
T Consensus 8 i~~v~k~yg-~~~av~~is---l~i~~Gef---~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 8 IRNVSKSFG-DFTAVDDIS---LDIKKGEF---VTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred EEeeeeecC-CeeEEecce---eeecCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 899999998 677899999 99999888 999999999999999999999999999999999999998876 678
Q ss_pred EEEEcCCCcccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
||+|+|+-.||+ -||+|||.||-. ...++|+ ++++.++|+.+++.+
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i------------------------------~~rv~e~L~lV~L~~ 128 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEI------------------------------KARVEEALELVGLEG 128 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHH------------------------------HHHHHHHHHHcCchh
Confidence 999999999998 699999999842 1122222 345677889999988
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 1133 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRL 1133 (1192)
+-.+.| ..|||||+||+||||||..+|++|+||||.||||.+-..+++..+++..+ |.|.|+|||+-
T Consensus 129 ~~~R~p-----------~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 129 FADRKP-----------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred hhhhCh-----------hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 665544 57999999999999999999999999999999999999999988876543 68999999997
Q ss_pred h-HHHhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1134 S-TIIHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1134 S-TI~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+ .+.-+|||.||++|+|.+.|+++|+..+.
T Consensus 198 eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 198 EEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 6 56789999999999999999999999764
No 160
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=364.00 Aligned_cols=221 Identities=27% Similarity=0.473 Sum_probs=180.7
Q ss_pred cccccccccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC
Q psy13234 894 NKIEENMEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 969 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~ 969 (1192)
+.++ ++|++++|+.. .++++++| +.+.+|+. +||+||||||||||+++|+|+++|++|+|.+||.++.
T Consensus 5 ~~l~--i~nl~~~~~~~~~~~~~il~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 76 (289)
T PRK13645 5 KDII--LDNVSYTYAKKTPFEFKALNNTS---LTFKKNKV---TCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIP 76 (289)
T ss_pred ceEE--EEEEEEEeCCCCccccceeeeeE---EEEeCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcc
Confidence 4566 89999999753 25899999 99999988 9999999999999999999999999999999999985
Q ss_pred C----C-ChHhhcccEEEEcCCC--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhccc
Q psy13234 970 T----V-SQASLRQAIGVVPQDT--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINAS 1040 (1192)
Q Consensus 970 ~----i-~~~sLR~~Ig~VPQDp--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~s 1040 (1192)
. . +...+|++|+|+||++ .+|+.|++|||.++.. +.+.++.
T Consensus 77 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~------------------------------ 126 (289)
T PRK13645 77 ANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEA------------------------------ 126 (289)
T ss_pred ccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHH------------------------------
Confidence 3 2 4567889999999998 5788999999987532 1111111
Q ss_pred HHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy13234 1041 EEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV 1120 (1192)
Q Consensus 1041 deeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l 1120 (1192)
.+++.+.++..++ |+++ .......||||||||++||||++++|++||||||||+||+++.+.+.+.|++.
T Consensus 127 ~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 196 (289)
T PRK13645 127 YKKVPELLKLVQL-------PEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196 (289)
T ss_pred HHHHHHHHHHcCC-------ChhH---hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1223334444443 2221 23445689999999999999999999999999999999999999999999887
Q ss_pred cC--CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1121 CA--SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1121 ~~--grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 197 ~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 241 (289)
T PRK13645 197 NKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241 (289)
T ss_pred HHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 53 799999999999874 6999999999999999999988653
No 161
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=6.2e-40 Score=350.41 Aligned_cols=207 Identities=26% Similarity=0.411 Sum_probs=169.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++. ..|++
T Consensus 2 ~~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~ 69 (213)
T cd03235 2 VEDLTVSYGG-HPVLEDVS---FEVKPGEF---LAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKR 69 (213)
T ss_pred cccceeEECC-EEeeecce---eEEcCCCE---EEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhh
Confidence 6788999964 56899999 99999998 9999999999999999999999999999999999874 47889
Q ss_pred EEEEcCCCcc---ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVL---FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~L---FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
|+|+||++.+ |+.|++|||.++...... . ..... +..++++.++++..++.+.
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~--~----------------~~~~~------~~~~~~~~~~l~~~~l~~~ 125 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKG--L----------------FRRLS------KADKAKVDEALERVGLSEL 125 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccc--c----------------ccCCC------HHHHHHHHHHHHHcCCHHH
Confidence 9999999987 668999999875321000 0 00000 0123456677788888765
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLST 1135 (1192)
..+. ..+||||||||++||||++++|+++||||||++||+++.+.+.+.|++.. +++|+|+|||+++.
T Consensus 126 ~~~~-----------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~ 194 (213)
T cd03235 126 ADRQ-----------IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL 194 (213)
T ss_pred HhCC-----------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4432 34799999999999999999999999999999999999999999999875 57999999999999
Q ss_pred HHh-cCEEEEEeCCEEEEEc
Q psy13234 1136 IIH-ADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1136 I~~-aDrIlVLe~G~IvE~G 1154 (1192)
+.. ||+|++|++| +++.|
T Consensus 195 ~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 195 VLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHhcCEEEEEcCc-EeecC
Confidence 865 8999999986 55554
No 162
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-40 Score=359.40 Aligned_cols=229 Identities=22% Similarity=0.393 Sum_probs=190.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||+++.+.+...+++.
T Consensus 5 ~~~l~~~~~~-~~il~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 5 TENLTVGYGT-KRILNDLS---LSLPTGKI---TALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77 (255)
T ss_pred EEeEEEEECC-EEEEeeee---eEEcCCcE---EEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhh
Confidence 7899999964 57899999 99999988 99999999999999999999999999999999999998888888999
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|+||++.+|++ |+.||+.++.....+ . ++. .. ...++++.++++..++.+...
T Consensus 78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~-----~------------~~~--~~-----~~~~~~~~~~l~~~~l~~~~~ 133 (255)
T PRK11231 78 LALLPQHHLTPEGITVRELVAYGRSPWLS-----L------------WGR--LS-----AEDNARVNQAMEQTRINHLAD 133 (255)
T ss_pred eEEecccCCCCCCccHHHHHHhccchhhh-----h------------ccC--CC-----HHHHHHHHHHHHHcCCHHHHc
Confidence 9999999999987 999999876321000 0 000 00 012345566677777765443
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~ 1137 (1192)
+ ....||||||||++||||++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.
T Consensus 134 ~-----------~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~ 202 (255)
T PRK11231 134 R-----------RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQAS 202 (255)
T ss_pred C-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 2 345799999999999999999999999999999999999999999998875 4799999999999875
Q ss_pred -hcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1138 -HADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1138 -~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
.||+|++|++|++++.|+++++... ..+.+.+.
T Consensus 203 ~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 236 (255)
T PRK11231 203 RYCDHLVVLANGHVMAQGTPEEVMTP-GLLRTVFD 236 (255)
T ss_pred HhcCEEEEEECCeEEEEcCHHHhcCH-HHHHHHhC
Confidence 5999999999999999999998753 45666664
No 163
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-40 Score=361.61 Aligned_cols=224 Identities=30% Similarity=0.456 Sum_probs=184.0
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT 970 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~~ 970 (1192)
++ ++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 22 l~--~~~l~~~~~~-~~il~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 22 LE--VKDLSIYYGE-KRAVNDIS---MDIEKHAV---TALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred EE--EEEEEEEeCC-ceeeeceE---EEEcCCCE---EEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 55 8999999964 56899999 99999998 99999999999999999999865 789999999999965
Q ss_pred --CChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHH
Q psy13234 971 --VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048 (1192)
Q Consensus 971 --i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL 1048 (1192)
.+...+|++|+|+||++.+|++|++||+.++....... .+ ...++.+.+++
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~--~~-------------------------~~~~~~~~~~l 145 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGER--RK-------------------------SVLDEIVEESL 145 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCC--cH-------------------------HHHHHHHHHHH
Confidence 34557889999999999999999999998652100000 00 01123345555
Q ss_pred HHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEE
Q psy13234 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 1128 (1192)
Q Consensus 1049 ~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIv 1128 (1192)
+..++.+.+. ........+||||||||++||||++++|+++||||||++||+++.+.+.+.|+++.+++|+|+
T Consensus 146 ~~~~l~~~~~-------~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 218 (268)
T PRK14248 146 TKAALWDEVK-------DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIII 218 (268)
T ss_pred HHcCCCcchH-------HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEE
Confidence 6666532221 123445668999999999999999999999999999999999999999999999877899999
Q ss_pred EecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1129 VAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1129 IAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+||+++.+. .||+|++|++|++++.|+++++...
T Consensus 219 ~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 219 VTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred EEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999775 5999999999999999999998764
No 164
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=356.47 Aligned_cols=220 Identities=27% Similarity=0.438 Sum_probs=185.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecC-CCCh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIK-TVSQ 973 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~-~i~~ 973 (1192)
++|+++.|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++| ++|+|.+||.++. ..+.
T Consensus 6 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 78 (249)
T PRK14253 6 IENLDLFYGE-NQALKSIN---LPIPARQV---TALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78 (249)
T ss_pred EeccEEEECC-eeeeecce---EEecCCCE---EEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccch
Confidence 8899999964 57899999 99999998 999999999999999999999996 5999999999985 4566
Q ss_pred HhhcccEEEEcCCCccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
..+|+.++|+||++.+|+.|++|||.++... .++++ ..++++.++++..
T Consensus 79 ~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~ 129 (249)
T PRK14253 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKK-----------------------------VLDEVVERSLRGA 129 (249)
T ss_pred HHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchH-----------------------------HHHHHHHHHHHHc
Confidence 7889999999999999999999999875311 11000 1123445566777
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 1131 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAH 1131 (1192)
++++.+. +........||||||||++||||++.+|+++||||||++||.++.+.+.+.|++..+++|+|+|||
T Consensus 130 ~l~~~~~-------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 202 (249)
T PRK14253 130 ALWDEVK-------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202 (249)
T ss_pred CCchhhh-------HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 7654432 233445668999999999999999999999999999999999999999999999877899999999
Q ss_pred ChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1132 RLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1132 RLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 203 ~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (249)
T PRK14253 203 SMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234 (249)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999875 999999999999999999998653
No 165
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=357.04 Aligned_cols=223 Identities=28% Similarity=0.434 Sum_probs=185.9
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCeec
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD--V---ESGDIFIDNQNI 968 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd--p---~sGsI~IDG~DI 968 (1192)
+.++ ++|++++|+. +++++++| +.+.+|+. +||+|+||||||||+++|.|+++ | ++|+|.+||+++
T Consensus 3 ~~l~--~~nl~~~~~~-~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 73 (252)
T PRK14256 3 NKVK--LEQLNVHFGK-NHAVKDVS---MDFPENSV---TAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 (252)
T ss_pred cEEE--EEEEEEEeCC-eeEEecce---EEEcCCCE---EEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEc
Confidence 4456 8999999974 56899999 99999998 99999999999999999999986 4 689999999999
Q ss_pred CCC--ChHhhcccEEEEcCCCcccc-ccHHHHHhccccC---CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHH
Q psy13234 969 KTV--SQASLRQAIGVVPQDTVLFN-NSIKFNIQYARIN---ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042 (1192)
Q Consensus 969 ~~i--~~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~---asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sde 1042 (1192)
... +...+|++|+|+||++.+|. .|++||+.++... .+.++ .++
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~------------------------------~~~ 123 (252)
T PRK14256 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSE------------------------------ADE 123 (252)
T ss_pred ccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHH------------------------------HHH
Confidence 653 45578999999999999998 5999999864210 01111 123
Q ss_pred HHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q psy13234 1043 EVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122 (1192)
Q Consensus 1043 eI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~ 1122 (1192)
++.++++..++.+.+.. ........||||||||++||||++++|+++|||||||+||.++.+.+.+.|+++.+
T Consensus 124 ~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14256 124 IVESSLKRVALWDEVKD-------RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE 196 (252)
T ss_pred HHHHHHHHcCCchhhhH-------HhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 44556677776543321 22345668999999999999999999999999999999999999999999999988
Q ss_pred CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1123 SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1123 grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
++|+|+|||+++.+. .||+|++|++|++++.|+++|+...
T Consensus 197 ~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14256 197 KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT 237 (252)
T ss_pred CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 899999999999885 5999999999999999999998754
No 166
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-39 Score=347.86 Aligned_cols=204 Identities=23% Similarity=0.403 Sum_probs=173.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.. . .++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++...+. .|+.
T Consensus 3 ~~~l~~~~~~~-~--~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~ 71 (211)
T cd03298 3 LDKIRFSYGEQ-P--MHFD---LTFAQGEI---TAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRP 71 (211)
T ss_pred EEeEEEEeCCE-e--cceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHcc
Confidence 78899999642 2 3788 99999988 99999999999999999999999999999999999987654 3578
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc-CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI-NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~-~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
++|+||++.+|.+ |++||+.++.. .... . +.+++++.++++..++.+..
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~-----------------------~------~~~~~~~~~~l~~~~l~~~~ 122 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKL-----------------------T------AEDRQAIEVALARVGLAGLE 122 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCc-----------------------c------HHHHHHHHHHHHHcCCHHHH
Confidence 9999999999986 99999987531 0000 0 01244567777888887766
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST 1135 (1192)
.+.| ..||||||||++||||++++|+++||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++.
T Consensus 123 ~~~~-----------~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 191 (211)
T cd03298 123 KRLP-----------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191 (211)
T ss_pred hCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 5554 37999999999999999999999999999999999999999999998753 7899999999999
Q ss_pred HHh-cCEEEEEeCCEEEEEc
Q psy13234 1136 IIH-ADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1136 I~~-aDrIlVLe~G~IvE~G 1154 (1192)
+.. ||+|++|++|++++.|
T Consensus 192 ~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 192 AKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHhhhCEEEEEECCEEeecC
Confidence 865 9999999999998765
No 167
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-39 Score=361.52 Aligned_cols=216 Identities=31% Similarity=0.477 Sum_probs=182.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC--CChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~--i~~~sLR 977 (1192)
++|++++|+.++++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++.. .+...+|
T Consensus 4 ~~~l~~~~~~~~~~l~~vs---l~i~~Ge~---~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (275)
T PRK13639 4 TRDLKYSYPDGTEALKGIN---FKAEKGEM---VALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77 (275)
T ss_pred EEEEEEEeCCCCeeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHH
Confidence 8899999975556899999 99999999 99999999999999999999999999999999999852 3345688
Q ss_pred ccEEEEcCCC--ccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 978 QAIGVVPQDT--VLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 978 ~~Ig~VPQDp--~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
++|+|+||++ .+|+.|+.|||.++... .+.++. ++++.++++..++
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~L 127 (275)
T PRK13639 78 KTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEV------------------------------EKRVKEALKAVGM 127 (275)
T ss_pred hheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHH------------------------------HHHHHHHHHHCCC
Confidence 9999999998 58899999999875321 111111 2334556677777
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHR 1132 (1192)
.+.. ++. ...||||||||++||||++.+|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+
T Consensus 128 ~~~~-------~~~----~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~ 196 (275)
T PRK13639 128 EGFE-------NKP----PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196 (275)
T ss_pred chhh-------cCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5432 222 347999999999999999999999999999999999999999999998754 7999999999
Q ss_pred hhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1133 LSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1133 LSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
++.+. .||+|++|++|++++.|+++++++.
T Consensus 197 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 197 VDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99987 5999999999999999999998764
No 168
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.5e-39 Score=358.78 Aligned_cols=224 Identities=21% Similarity=0.323 Sum_probs=185.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH---hh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~---sL 976 (1192)
++|++++|+ ++++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++.+.+.. .+
T Consensus 10 ~~~l~~~~~-~~~il~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 10 MRGVSFTRG-NRCIFDNIS---LTVPRGKI---TAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred EeCeEEEEC-CEEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 899999996 356899999 99999998 999999999999999999999999999999999999877653 35
Q ss_pred cccEEEEcCCCccccc-cHHHHHhccccC---CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 977 RQAIGVVPQDTVLFNN-SIKFNIQYARIN---ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnG-TIreNI~~G~~~---asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
|++|+|+||++.+|++ |++||+.++... .+.++ .++++.+.++..+
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~g 132 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL------------------------------LHSTVMMKLEAVG 132 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHH------------------------------HHHHHHHHHHHcC
Confidence 7889999999999986 999999864210 11110 1233455566666
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 1130 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIA 1130 (1192)
+.+... .. ...||||||||++||||++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+||
T Consensus 133 l~~~~~-------~~----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs 201 (269)
T PRK11831 133 LRGAAK-------LM----PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVS 201 (269)
T ss_pred Chhhhh-------CC----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 654332 22 347999999999999999999999999999999999999999999998753 68999999
Q ss_pred cChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHHHH
Q psy13234 1131 HRLSTIIH-ADEILVMHAGEIVERGRHEELLERN-GVYASMWI 1171 (1192)
Q Consensus 1131 HRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L~~ 1171 (1192)
|+++.+.. ||+|++|++|++++.|+++++.+.. ..++.++.
T Consensus 202 H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 202 HDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQFLD 244 (269)
T ss_pred cCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCcHHHHHHHH
Confidence 99998865 9999999999999999999998643 34555554
No 169
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=356.37 Aligned_cols=230 Identities=27% Similarity=0.407 Sum_probs=188.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCC--C
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTV--S 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~~i--~ 972 (1192)
++|++++|+ ++++++++| +.+.+|+. ++|+||||||||||+++|.|+.+| ++|+|.+||+++.+. +
T Consensus 9 ~~~l~~~~~-~~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 9 TKNLNLWYG-EKHALYDIT---ISIPKNRV---TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred EeeeEEEEC-CeeeeeeeE---EEECCCcE---EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 889999996 456899999 99999988 999999999999999999999763 489999999999876 4
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
....|+.|+|+||++.+|++|++|||.++...... .+. ...++++.++++..+
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~----------------------~~~-----~~~~~~~~~~l~~~~ 134 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGE----------------------KNK-----KTLDTIVEKSLKGAA 134 (253)
T ss_pred hhhhhceEEEEecCCccCcccHHHHHHhhHHhcCC----------------------CCH-----HHHHHHHHHHHHHhc
Confidence 56788999999999999999999999876310000 000 011234555566666
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecC
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHR 1132 (1192)
+.+.+ .+..+..+..||||||||++||||++.+|+++||||||++||.++.+.+.+.|+++.+++|+|++||+
T Consensus 135 l~~~l-------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~ 207 (253)
T PRK14261 135 LWDEV-------KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207 (253)
T ss_pred Cchhh-------HHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcC
Confidence 54322 23456667789999999999999999999999999999999999999999999998778999999999
Q ss_pred hhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHHH
Q psy13234 1133 LSTII-HADEILVMHAGEIVERGRHEELLERN-GVYASMW 1170 (1192)
Q Consensus 1133 LSTI~-~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L~ 1170 (1192)
++.+. .||+|++|++|++++.|+.+++.+.. ..+.+.|
T Consensus 208 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 247 (253)
T PRK14261 208 MQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTENY 247 (253)
T ss_pred HHHHHhhCCEEEEEECCEEEEcCCHHHHHhCCCcHHHHHH
Confidence 99986 59999999999999999999987543 2344444
No 170
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.5e-39 Score=359.57 Aligned_cols=226 Identities=23% Similarity=0.338 Sum_probs=183.3
Q ss_pred cccceeeecC--------CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 900 MEEDQFGFRK--------GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 900 fenVsFsY~~--------~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
++|++++|+. ++.+++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||+++...
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVS---LSIEEGET---VGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL 78 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCce---eEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc
Confidence 7899999963 356899999 99999998 999999999999999999999999999999999999887
Q ss_pred ChHh---hcccEEEEcCCCc--cc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHH
Q psy13234 972 SQAS---LRQAIGVVPQDTV--LF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 972 ~~~s---LR~~Ig~VPQDp~--LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
+.++ +|+.|+|+||++. ++ +.|++|||.++.... . .++. +..++++.
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--------~--------------~~~~-----~~~~~~~~ 131 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--------T--------------SLDE-----SEQKARIA 131 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--------c--------------CCCH-----HHHHHHHH
Confidence 7543 6789999999983 44 379999997532100 0 0000 01233455
Q ss_pred HHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--C
Q psy13234 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--S 1123 (1192)
Q Consensus 1046 ~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--g 1123 (1192)
++++..++.+. ........||||||||++||||++.+|++||||||||+||+++.+.+.+.|+++.+ +
T Consensus 132 ~~l~~~gl~~~----------~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g 201 (265)
T TIGR02769 132 ELLDMVGLRSE----------DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG 201 (265)
T ss_pred HHHHHcCCChh----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 55666665321 12345568999999999999999999999999999999999999999999998754 7
Q ss_pred ceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcCcHHHH
Q psy13234 1124 RTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERNGVYAS 1168 (1192)
Q Consensus 1124 rTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~ 1168 (1192)
+|+|+|||+++.+. .||+|++|++|++++.|+++++......|.+
T Consensus 202 ~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 247 (265)
T TIGR02769 202 TAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGR 247 (265)
T ss_pred cEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCCCCHHHH
Confidence 99999999999987 5999999999999999999999874444443
No 171
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.4e-39 Score=348.39 Aligned_cols=209 Identities=32% Similarity=0.428 Sum_probs=170.5
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh---
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ--- 973 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~--- 973 (1192)
++|++++|+.. .++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||+++.+.+.
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVS---FSIKKGET---LGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred EEeeeEeccCCCcceeeecCce---eEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhH
Confidence 78999999653 26899999 99999988 99999999999999999999999999999999999988774
Q ss_pred HhhcccEEEEcCCC--ccc-cccHHHHHhccccC----CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHH
Q psy13234 974 ASLRQAIGVVPQDT--VLF-NNSIKFNIQYARIN----ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp--~LF-nGTIreNI~~G~~~----asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~ 1046 (1192)
..+|++++|+||++ .++ +.|++|||.++... ..+++..++ ..+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~------------------------------~~~ 127 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA------------------------------VLL 127 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH------------------------------HHH
Confidence 67889999999999 344 57999999764211 001110000 112
Q ss_pred HHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--Cc
Q psy13234 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SR 1124 (1192)
Q Consensus 1047 AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--gr 1124 (1192)
.++..++. +........+||||||||++||||++.+|++|||||||++||+++.+.+.+.|++..+ ++
T Consensus 128 ~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 197 (228)
T cd03257 128 LLVGVGLP----------EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGL 197 (228)
T ss_pred HHHHCCCC----------hhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 33433331 1223445568999999999999999999999999999999999999999999998764 79
Q ss_pred eEEEEecChhHHH-hcCEEEEEeCCEEEEEc
Q psy13234 1125 TTIIVAHRLSTII-HADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1125 TvIvIAHRLSTI~-~aDrIlVLe~G~IvE~G 1154 (1192)
|+|++||+++.+. .||+|++|++|++++.|
T Consensus 198 tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 198 TLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred EEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999987 69999999999998865
No 172
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=350.74 Aligned_cols=213 Identities=28% Similarity=0.448 Sum_probs=181.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. . ..++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.
T Consensus 4 ~~~l~~~~~~-~--~~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~ 72 (232)
T PRK10771 4 LTDITWLYHH-L--PMRFD---LTVERGER---VAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRP 72 (232)
T ss_pred EEEEEEEECC-c--cceeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhcc
Confidence 7899999964 2 23787 99999888 99999999999999999999999999999999999987654 3578
Q ss_pred EEEEcCCCccccc-cHHHHHhccc-cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYAR-INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~-~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
++|+||++.+|.+ |++|||.++. +..... +.+++++.++++..++.+.+
T Consensus 73 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~l~~~~ 123 (232)
T PRK10771 73 VSMLFQENNLFSHLTVAQNIGLGLNPGLKLN-----------------------------AAQREKLHAIARQMGIEDLL 123 (232)
T ss_pred EEEEecccccccCCcHHHHHhcccccccCCC-----------------------------HHHHHHHHHHHHHcCcHHHH
Confidence 9999999999985 9999998652 100000 11245677778999988777
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST 1135 (1192)
.+.|. .||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+ ++|+|++||+++.
T Consensus 124 ~~~~~-----------~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 192 (232)
T PRK10771 124 ARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED 192 (232)
T ss_pred hCCcc-----------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 66552 7999999999999999999999999999999999999999999998753 7899999999998
Q ss_pred HHh-cCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1136 IIH-ADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1136 I~~-aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+.. ||+|++|++|++++.|+++++....
T Consensus 193 ~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 193 AARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 864 9999999999999999999998654
No 173
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=354.51 Aligned_cols=215 Identities=24% Similarity=0.386 Sum_probs=178.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-hcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s-LR~ 978 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++.+.+... .|+
T Consensus 8 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 8 FDKVSAHYGK-IQALHEVS---LHINQGEI---VTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred EEeEEEeeCC-ceeeeeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence 8899999964 56899999 99999998 9999999999999999999999999999999999998887654 678
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc-ChHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA-DIHER 1056 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A-~Lhd~ 1056 (1192)
.++|+||++.+|++ |++||+.++....+.++.. +++.++++.. ++.+.
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~l~~~ 130 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQ------------------------------ERIKWVYELFPRLHER 130 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHH------------------------------HHHHHHHHHHHHHHHH
Confidence 89999999999985 9999998764222221111 1222222322 12211
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLST 1135 (1192)
.......||||||||++||||++++|+|+||||||++||+++.+.+.+.|+++. +++|+|++||+++.
T Consensus 131 -----------~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (237)
T PRK11614 131 -----------RIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQ 199 (237)
T ss_pred -----------HhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence 122345799999999999999999999999999999999999999999998875 47999999999986
Q ss_pred H-HhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1136 I-IHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1136 I-~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+ ..||+|++|++|++++.|+++++...
T Consensus 200 ~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 200 ALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 5 56999999999999999999999753
No 174
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-39 Score=379.93 Aligned_cols=229 Identities=23% Similarity=0.395 Sum_probs=194.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| |.+.+|+. ++|+||+|||||||+|+|.|+++|++|+|.+||.++.+++..+++++
T Consensus 6 ~~nls~~y~~-~~vL~~vs---~~i~~Gei---v~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 6 VSDLSVEFGD-TTVLDGVD---LSVREGSL---VGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78 (402)
T ss_pred EeeEEEEECC-EEEEEeeE---EEECCCCE---EEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcc
Confidence 8899999964 67899999 99999988 99999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcc-ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVL-FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~L-FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
||||||++.+ |+.|++||+.+++..... .+.. + ...+++++.++++..++.+...
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~-----------------~~~~-~------~~~~~~~v~~~le~vgl~~~~~ 134 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRS-----------------RFDT-W------TETDRAAVERAMERTGVAQFAD 134 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcc-----------------cccC-C------CHHHHHHHHHHHHHcCCchhhc
Confidence 9999999997 788999999987521000 0000 0 0123456778889999877653
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHH-
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTI- 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI- 1136 (1192)
+ + ...||||||||++|||||+++|+||+|||||++||..+...+.+.|+++. +++|+|+++|+++.+
T Consensus 135 ~-------~----~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~ 203 (402)
T PRK09536 135 R-------P----VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAA 203 (402)
T ss_pred C-------C----hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 3 2 34799999999999999999999999999999999999999999999886 478999999999999
Q ss_pred HhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1137 IHADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1137 ~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
+.||+|++|++|++++.|+++|++.. ....+.+.
T Consensus 204 ~~adrii~l~~G~iv~~G~~~ev~~~-~~l~~~~~ 237 (402)
T PRK09536 204 RYCDELVLLADGRVRAAGPPADVLTA-DTLRAAFD 237 (402)
T ss_pred HhCCEEEEEECCEEEEecCHHHHhCc-HHHHHHhC
Confidence 56999999999999999999999864 34555553
No 175
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=360.79 Aligned_cols=220 Identities=28% Similarity=0.424 Sum_probs=185.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCCC-h
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTVS-Q 973 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~~i~-~ 973 (1192)
++|++++|+ ++++++++| +.+.+|+. ++|+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ .
T Consensus 24 i~nl~~~~~-~~~il~~vs---~~i~~Ge~---~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 24 AVNLTLGFA-GKTVLDQVS---MGFPARAV---TSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred EeeEEEEEC-CEEEeeeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 899999996 457899999 99999988 999999999999999999999986 6999999999998764 4
Q ss_pred HhhcccEEEEcCCCccccccHHHHHhccccC---CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARIN---ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~---asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
..+|++|+|+||++.+|+.|+++||.++... .++++..+ .+.+.++.
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~------------------------------~~~~~l~~ 146 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRG------------------------------VAQARLTE 146 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHH------------------------------HHHHHHHH
Confidence 5778999999999999999999999875311 12222211 12333455
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
.++.+ .+++.......+||||||||++||||++++|+++||||||++||..+.+.+.+.|++..+++|+|+||
T Consensus 147 ~~l~~-------~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivs 219 (276)
T PRK14271 147 VGLWD-------AVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219 (276)
T ss_pred cCCCc-------hhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 55432 22334456677899999999999999999999999999999999999999999999887779999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 220 H~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 220 HNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999876 59999999999999999999998653
No 176
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-39 Score=353.12 Aligned_cols=213 Identities=31% Similarity=0.454 Sum_probs=183.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++++++|+. ++++++++ +.+.+|+. ++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.
T Consensus 3 ~~~l~~~~~~-~~il~~i~---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~ 73 (232)
T cd03300 3 LENVSKFYGG-FVALDGVS---LDIKEGEF---FTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRP 73 (232)
T ss_pred EEeEEEEeCC-eeeeccce---EEECCCCE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcc
Confidence 7889999975 46899999 99999998 99999999999999999999999999999999999987664 3678
Q ss_pred EEEEcCCCccccc-cHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+|.+ |++||+.++... .+. ...++++.++++..++++.
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~------------------------------~~~~~~~~~~l~~~~l~~~ 123 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPK------------------------------AEIKERVAEALDLVQLEGY 123 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCH------------------------------HHHHHHHHHHHHHcCCchh
Confidence 9999999999975 999999865210 010 1123455667788888776
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
+.+.| ..||||||||++||||++++|+++||||||++||..+.+.+.+.|+++.+ ++|+|++||+++
T Consensus 124 ~~~~~-----------~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 124 ANRKP-----------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred hcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 65554 48999999999999999999999999999999999999999999998764 799999999999
Q ss_pred HHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1135 TII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.+. .||+|++|++|++++.|+++++.+.
T Consensus 193 ~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 193 EALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 985 4899999999999999999998764
No 177
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-39 Score=354.25 Aligned_cols=219 Identities=28% Similarity=0.429 Sum_probs=184.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCC--C
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTV--S 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~~i--~ 972 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++| ++|+|.+||.++... +
T Consensus 7 ~~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 7 SKNLNLWYGE-KQALNDIN---LPIYENKI---TALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred EEEeEEEECC-eeeeecee---EEEcCCCE---EEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 8899999964 56899999 99999888 999999999999999999999986 799999999999653 4
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCC---CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINA---SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~a---sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
....|+.++|+||++.+|+.|++||+.++.... +.+ ..++++.++++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~------------------------------~~~~~~~~~l~ 129 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKK------------------------------ELDKIVEWALK 129 (251)
T ss_pred HHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHH------------------------------HHHHHHHHHHH
Confidence 457789999999999999999999998753110 000 11234556677
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV 1129 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvI 1129 (1192)
.+++.+.+.. ........||||||||++||||++++|+|+|||||||+||.++.+.+.+.|++..+++|+|+|
T Consensus 130 ~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiiv 202 (251)
T PRK14270 130 KAALWDEVKD-------DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIV 202 (251)
T ss_pred HcCCchhhhh-------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 7776543322 233456689999999999999999999999999999999999999999999998778999999
Q ss_pred ecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1130 AHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1130 AHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 203 sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 203 THNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred EcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 999998765 999999999999999999998754
No 178
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=348.38 Aligned_cols=227 Identities=31% Similarity=0.466 Sum_probs=185.2
Q ss_pred cccceeeecCCC---CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC-ChHh
Q psy13234 900 MEEDQFGFRKGK---GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV-SQAS 975 (1192)
Q Consensus 900 fenVsFsY~~~~---~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i-~~~s 975 (1192)
.+|+++.|+.++ ++++++| +.+.+|++ +||||+||||||||.++|.|+-+|++|+|.+||.++..- ..+.
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS---~~i~~Ge~---lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVS---LEIERGET---LGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred EeceEEEecCCcchhhhhccee---EEecCCCE---EEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 788999998655 6899999 99999999 999999999999999999999999999999999776553 3447
Q ss_pred hcccEEEEcCCCccccccHHHHHhccccCCCH-HHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 976 LRQAIGVVPQDTVLFNNSIKFNIQYARINASE-EEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 976 LR~~Ig~VPQDp~LFnGTIreNI~~G~~~asd-EeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
.++.+-+|+|||. +|+ +|--+- +-+.|+. .+.+.+ -.+.+++++|+.+|+.
T Consensus 80 ~~~~VQmVFQDp~---~SL-------nP~~tv~~~l~Epl-----------~~~~~~-------~~~~~i~~~L~~VgL~ 131 (252)
T COG1124 80 FYRPVQMVFQDPY---SSL-------NPRRTVGRILSEPL-----------RPHGLS-------KSQQRIAELLDQVGLP 131 (252)
T ss_pred hccceeEEecCCc---ccc-------CcchhHHHHHhhhh-----------ccCCcc-------HHHHHHHHHHHHcCCC
Confidence 8899999999996 222 122221 2223333 112222 2345588999999997
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc--eEEEEecC
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 1132 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~gr--TvIvIAHR 1132 (1192)
+.... ..-..|||||||||||||||.-+|++||||||||+||....+.|.+.+.++.+++ |.|+|||+
T Consensus 132 ~~~l~----------R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd 201 (252)
T COG1124 132 PSFLD----------RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201 (252)
T ss_pred HHHHh----------cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc
Confidence 65432 2335699999999999999999999999999999999999999999999988876 99999999
Q ss_pred hhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHHH
Q psy13234 1133 LSTIIH-ADEILVMHAGEIVERGRHEELLER-NGVYASMW 1170 (1192)
Q Consensus 1133 LSTI~~-aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L~ 1170 (1192)
++.+.+ ||||+||++|+++|.++-+++... ...|.+..
T Consensus 202 l~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~L 241 (252)
T COG1124 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTREL 241 (252)
T ss_pred HHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHH
Confidence 999976 999999999999999999999976 45565543
No 179
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.5e-39 Score=352.23 Aligned_cols=215 Identities=29% Similarity=0.419 Sum_probs=181.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +++.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .++.
T Consensus 3 i~~l~~~~~~-~~il~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~ 73 (237)
T TIGR00968 3 IANISKRFGS-FQALDDVN---LEVPTGSL---VALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRK 73 (237)
T ss_pred EEEEEEEECC-eeeeeeEE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcC
Confidence 7889999974 46899999 99999999 99999999999999999999999999999999999987653 4788
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|+||++.+|++ |++||+.++..... .+. ...++++.++++..++.+...
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~-----------------------~~~-----~~~~~~~~~~l~~~~l~~~~~ 125 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRK-----------------------HPK-----AKIKARVEELLELVQLEGLGD 125 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcC-----------------------CCH-----HHHHHHHHHHHHHcCCHhHhh
Confidence 9999999999985 99999987532100 000 012344556667777765543
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI 1136 (1192)
+. ..+||||||||++||||++++|++++|||||++||.++++.+.+.|++..+ ++|+|++||+++.+
T Consensus 126 ~~-----------~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 126 RY-----------PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194 (237)
T ss_pred CC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 32 347999999999999999999999999999999999999999999998755 69999999999987
Q ss_pred Hh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1137 IH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1137 ~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.. ||+|++|++|++++.|+++++++.
T Consensus 195 ~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 195 MEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 55 999999999999999999999753
No 180
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-39 Score=346.46 Aligned_cols=222 Identities=28% Similarity=0.485 Sum_probs=192.7
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh-
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ- 973 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~- 973 (1192)
.|+ +++++++|. ++.++++++ +.+++|+. ++|+||||||||||+|++.|+..|++|+|.++|.|+.+++.
T Consensus 8 ~I~--vr~v~~~fG-~~~Ild~v~---l~V~~Gei---~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 8 LIE--VRGVTKSFG-DRVILDGVD---LDVPRGEI---LAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred eEE--EeeeeeecC-CEEEecCce---eeecCCcE---EEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHH
Confidence 456 899999995 467999999 99999999 99999999999999999999999999999999999999986
Q ss_pred --HhhcccEEEEcCCCccccc-cHHHHHhc---cccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 974 --ASLRQAIGVVPQDTVLFNN-SIKFNIQY---ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 974 --~sLR~~Ig~VPQDp~LFnG-TIreNI~~---G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
..+|+++|++.|+..||+. ||+||+.| ...+.+++++.+.+ ..-
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv------------------------------~~K 128 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV------------------------------LMK 128 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH------------------------------HHH
Confidence 4679999999999999996 99999997 23345555655544 234
Q ss_pred HHHcChHHH-HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--Cc
Q psy13234 1048 ATSADIHER-ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SR 1124 (1192)
Q Consensus 1048 L~~A~Lhd~-I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--gr 1124 (1192)
|+.+|+... -..+| ..||||.|.|+|||||+.-||+|+++|||||+||+.+...+-+.|+++.+ +.
T Consensus 129 L~~VGL~~~~~~~~P-----------sELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~ 197 (263)
T COG1127 129 LELVGLRGAAADLYP-----------SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197 (263)
T ss_pred HHhcCCChhhhhhCc-----------hhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 578888776 44455 46999999999999999999999999999999999999999988887654 68
Q ss_pred eEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcCcHH
Q psy13234 1125 TTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERNGVY 1166 (1192)
Q Consensus 1125 TvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~G~Y 1166 (1192)
|+|+|||+++++. -||||+++.||+|+-.|+++|+.+.+..|
T Consensus 198 T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~ 240 (263)
T COG1127 198 TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPW 240 (263)
T ss_pred EEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHH
Confidence 9999999999875 57999999999999999999999876544
No 181
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-39 Score=352.00 Aligned_cols=215 Identities=23% Similarity=0.423 Sum_probs=178.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-hcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s-LR~ 978 (1192)
+++++++|+. +++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++...+... .|+
T Consensus 6 ~~~l~~~~~~-~~~l~~~s---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 6 AKNLAKAYKG-RRVVEDVS---LTVNSGEI---VGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred EeCcEEEeCC-EEEEeeee---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHh
Confidence 7899999964 57899999 99999998 9999999999999999999999999999999999998877644 578
Q ss_pred cEEEEcCCCccccc-cHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
.|+|+||++.+|++ |++||+.++.. +.++++ .++++.+.++..++
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l- 127 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ------------------------------REDRANELMEEFHI- 127 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcccccCHHH------------------------------HHHHHHHHHHHcCC-
Confidence 99999999999985 99999986421 011111 11223333344443
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRL 1133 (1192)
+.........||||||||++||||++++|++|||||||++||+++.+.+.+.+++.. +++|+|++||++
T Consensus 128 ----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 128 ----------EHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred ----------HHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 333345566899999999999999999999999999999999999999999998765 479999999999
Q ss_pred hHH-HhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1134 STI-IHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1134 STI-~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+.+ ..||+|++|++|++++.|+++++++.
T Consensus 198 ~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 198 RETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 766 56999999999999999999998753
No 182
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-39 Score=374.65 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=184.6
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~ 974 (1192)
.++ ++|++++|.. ..++++++ +.+.+|+. ++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.
T Consensus 19 ~l~--l~~v~~~~~~-~~~l~~vs---l~i~~Ge~---~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~- 88 (377)
T PRK11607 19 LLE--IRNLTKSFDG-QHAVDDVS---LTIYKGEI---FALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP- 88 (377)
T ss_pred eEE--EEeEEEEECC-EEEEeeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-
Confidence 356 8999999964 46889998 99999888 99999999999999999999999999999999999987664
Q ss_pred hhcccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 975 SLRQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
.|+.||||+|++.||+. |++|||+|+.. ..+.++ .++++.++++..
T Consensus 89 -~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~------------------------------~~~~v~~~l~~l 137 (377)
T PRK11607 89 -YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE------------------------------IASRVNEMLGLV 137 (377)
T ss_pred -HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHc
Confidence 57899999999999975 99999998732 111111 123456666777
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEE
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV 1129 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvI 1129 (1192)
++.+...+.| ..||||||||+||||||+++|++|+||||||+||.++.+.+.+.|+++.+ +.|+|+|
T Consensus 138 ~L~~~~~~~~-----------~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v 206 (377)
T PRK11607 138 HMQEFAKRKP-----------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206 (377)
T ss_pred CCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 7766554444 37999999999999999999999999999999999999999988877643 6899999
Q ss_pred ecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1130 AHRLSTI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1130 AHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
||+++.+ .-||+|++|++|++++.|+++|+..+.
T Consensus 207 THd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 207 THDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred cCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999975 569999999999999999999998653
No 183
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-39 Score=353.26 Aligned_cols=220 Identities=29% Similarity=0.451 Sum_probs=185.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--CC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT--VS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~~--i~ 972 (1192)
++|+++.|+. +++++++| +.+.+|+. ++|+|++|||||||+++|+|+.+ |++|+|.+||++++. .+
T Consensus 6 ~~~v~~~~~~-~~~l~~~s---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 78 (250)
T PRK14266 6 VENLNTYFDD-AHILKNVN---LDIPKNSV---TALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78 (250)
T ss_pred EEeEEEEeCC-eEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence 8899999964 56899999 99999988 99999999999999999999875 489999999999876 34
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
...+|++++|+||++.+|++|++|||.++.. +..+++ ..++++.++++.
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~ 129 (250)
T PRK14266 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDED-----------------------------FIEERVEESLKA 129 (250)
T ss_pred HHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHH-----------------------------HHHHHHHHHHHH
Confidence 6678999999999999999999999987521 111111 113445666788
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
+++.+.+..+ +.+.+..||||||||++||||++++|+|++|||||++||.++.+.+.+.|++..+++|+|++|
T Consensus 130 ~~l~~~l~~~-------~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~s 202 (250)
T PRK14266 130 AALWDEVKDK-------LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVT 202 (250)
T ss_pred cCCchhHHHH-------HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 8876655421 244566899999999999999999999999999999999999999999999988889999999
Q ss_pred cChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1131 HRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1131 HRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+++.+.. ||+|++|++|++++.|+++++...
T Consensus 203 h~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 203 HNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred CCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 99998765 889999999999999999999754
No 184
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=358.63 Aligned_cols=222 Identities=27% Similarity=0.416 Sum_probs=184.6
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT 970 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~~ 970 (1192)
++ ++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++ |++|+|.+||.++..
T Consensus 14 l~--i~nl~~~~~~-~~il~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 14 IS--LQNVTISYGT-FEAVKNVF---CDIPRGKV---TALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred EE--EEeEEEEECC-EEEEcceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 55 8999999964 46899999 99999999 99999999999999999999998 689999999999863
Q ss_pred --CChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHH
Q psy13234 971 --VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048 (1192)
Q Consensus 971 --i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL 1048 (1192)
.+...+|++|+|+||++.+|+.|++||+.++..... ++ ...++++.+++
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~-----------------------~~------~~~~~~~~~~l 135 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARING-----------------------YT------GDMDELVERSL 135 (269)
T ss_pred ccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcC-----------------------Cc------HHHHHHHHHHH
Confidence 466778999999999999999999999987632100 00 00123445555
Q ss_pred HHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEE
Q psy13234 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 1128 (1192)
Q Consensus 1049 ~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIv 1128 (1192)
+.+++.+.+ ++........||||||||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+
T Consensus 136 ~~~~l~~~l-------~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 208 (269)
T PRK14259 136 RKAAVWDEC-------KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208 (269)
T ss_pred HHhCCcchh-------hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 666654322 2233445568999999999999999999999999999999999999999999999877899999
Q ss_pred EecChhHH-HhcCEEEEEeC-----------CEEEEEcCHHHHHhc
Q psy13234 1129 VAHRLSTI-IHADEILVMHA-----------GEIVERGRHEELLER 1162 (1192)
Q Consensus 1129 IAHRLSTI-~~aDrIlVLe~-----------G~IvE~GtheELL~~ 1162 (1192)
|||+++.+ ..||+|++|++ |+++|.|+.+++...
T Consensus 209 vtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 209 VTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNS 254 (269)
T ss_pred EeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhC
Confidence 99999987 46999999996 679999999999864
No 185
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.5e-39 Score=345.09 Aligned_cols=203 Identities=30% Similarity=0.463 Sum_probs=170.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC--CChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~--i~~~sLR 977 (1192)
++|++++|+. +++++++| +.+.+|+. +||+||||||||||+++|+|+++|++|+|.+||+++.. .+....|
T Consensus 3 ~~~l~~~~~~-~~~l~~~s---~~i~~G~~---~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (213)
T cd03262 3 IKNLHKSFGD-FHVLKGID---LTVKKGEV---VVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75 (213)
T ss_pred EEEEEEEECC-eEeecCce---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHH
Confidence 7889999965 56899999 99999988 99999999999999999999999999999999999853 4556788
Q ss_pred ccEEEEcCCCcccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 978 QAIGVVPQDTVLFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
++|+|+||++.+|+ .|++||+.++.. +.+.++ .++++.++++..++
T Consensus 76 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l 125 (213)
T cd03262 76 QKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAE------------------------------AEERALELLEKVGL 125 (213)
T ss_pred hcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHH------------------------------HHHHHHHHHHHcCC
Confidence 99999999999997 699999987531 111111 12334555566666
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHR 1132 (1192)
.+...+. ...||||||||++||||++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+
T Consensus 126 ~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~ 194 (213)
T cd03262 126 ADKADAY-----------PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194 (213)
T ss_pred HhHhhhC-----------ccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5543332 357999999999999999999999999999999999999999999998754 6899999999
Q ss_pred hhHHHh-cCEEEEEeCCEE
Q psy13234 1133 LSTIIH-ADEILVMHAGEI 1150 (1192)
Q Consensus 1133 LSTI~~-aDrIlVLe~G~I 1150 (1192)
++.+.. ||+|++|++|++
T Consensus 195 ~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 195 MGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHhCCEEEEEeCCcC
Confidence 999865 999999999975
No 186
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=357.07 Aligned_cols=222 Identities=27% Similarity=0.406 Sum_probs=186.1
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecC
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIK 969 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~ 969 (1192)
.++ ++|+++.|+. +++++++| +++.+|+. ++|+|+||||||||+++|+|+++| ++|+|.+||+++.
T Consensus 7 ~l~--~~~l~~~~~~-~~il~~is---l~i~~Ge~---~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 7 AIK--VKDLSFYYNT-SKAIEGIS---MDIYRNKV---TAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred eEE--EEEEEEEECC-eEeecceE---EEEcCCCE---EEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecc
Confidence 455 8999999964 56899999 99999998 999999999999999999999986 4899999999986
Q ss_pred C--CChHhhcccEEEEcCCCccccccHHHHHhccccCC---CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 970 T--VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINA---SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 970 ~--i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~a---sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
. .+...+|++|+|+||++.+|+.|++||+.++.... ++++ .++.+
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~------------------------------~~~~~ 127 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD------------------------------LDEIV 127 (259)
T ss_pred ccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHH------------------------------HHHHH
Confidence 4 45567889999999999999999999998753110 1110 12334
Q ss_pred HHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc
Q psy13234 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR 1124 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~gr 1124 (1192)
.++++.+++.+.+.. ........||||||||++||||++++|+++||||||++||..+.+.+.+.|++..+++
T Consensus 128 ~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 200 (259)
T PRK14260 128 ESALKGAALWQEVKD-------KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSEL 200 (259)
T ss_pred HHHHHHcCCcchhhh-------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 556677777654432 1234566899999999999999999999999999999999999999999999987789
Q ss_pred eEEEEecChhHHH-hcCEEEEEe-----CCEEEEEcCHHHHHhc
Q psy13234 1125 TTIIVAHRLSTII-HADEILVMH-----AGEIVERGRHEELLER 1162 (1192)
Q Consensus 1125 TvIvIAHRLSTI~-~aDrIlVLe-----~G~IvE~GtheELL~~ 1162 (1192)
|+|+|||+++.+. .||++++|+ +|++++.|+++|+.+.
T Consensus 201 tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 201 TIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN 244 (259)
T ss_pred EEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcC
Confidence 9999999999986 499999998 5999999999998754
No 187
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.8e-39 Score=335.62 Aligned_cols=210 Identities=25% Similarity=0.444 Sum_probs=186.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh---Hhh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~---~sL 976 (1192)
|++|+..|+.++++|+++| |.+++|+. +-++|||||||||++|+|++.-.|++|+|.++|+|+..+.. .-|
T Consensus 4 f~~V~k~Y~~g~~aL~~vs---~~i~~Gef---~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 4 FENVSKAYPGGREALRDVS---FHIPKGEF---VFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred ehhhhhhcCCCchhhhCce---EeecCceE---EEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchh
Confidence 9999999999988999999 99999998 99999999999999999999999999999999999988774 458
Q ss_pred cccEEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 977 RQAIGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
|++||+|.||--|.. -|+.||++|.-. ..+++++ .+++.++|+.+|+
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i------------------------------~~rV~~~L~~VgL 127 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREI------------------------------RRRVSEVLDLVGL 127 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHH------------------------------HHHHHHHHHHhcc
Confidence 999999999999776 699999997521 1223222 3566788999999
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHR 1132 (1192)
.+....||. .|||||+||+|||||+..+|++||-||||-|||+++...|++.+.+.- .|.||++.||+
T Consensus 128 ~~k~~~lP~-----------~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd 196 (223)
T COG2884 128 KHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD 196 (223)
T ss_pred chhhhcCcc-----------ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc
Confidence 999999983 699999999999999999999999999999999999999999998763 57899999999
Q ss_pred hhHHHhc-CEEEEEeCCEEEEEcCH
Q psy13234 1133 LSTIIHA-DEILVMHAGEIVERGRH 1156 (1192)
Q Consensus 1133 LSTI~~a-DrIlVLe~G~IvE~Gth 1156 (1192)
.+.+..+ -|++.+++|+++....+
T Consensus 197 ~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 197 LELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHHhccCcEEEEeCCEEEecccc
Confidence 9999876 58999999999976544
No 188
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-39 Score=360.60 Aligned_cols=216 Identities=26% Similarity=0.442 Sum_probs=180.9
Q ss_pred cccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC----
Q psy13234 900 MEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV---- 971 (1192)
Q Consensus 900 fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i---- 971 (1192)
++|++++|+.+ +++++++| +++.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++...
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vs---l~i~~Ge~---~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNIS---FELEEGSF---VALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeE---EEEeCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 88999999742 46899999 99999999 999999999999999999999999999999999998653
Q ss_pred ChHhhcccEEEEcCCC--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 972 SQASLRQAIGVVPQDT--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
+....|+.|+|+||+| .+|+.|++|||.++.. ..+.++. ++.+.++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~ 128 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA------------------------------KEKALKW 128 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHH------------------------------HHHHHHH
Confidence 3467788999999998 5888999999987532 1122211 2234455
Q ss_pred HHHcChH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCce
Q psy13234 1048 ATSADIH-ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRT 1125 (1192)
Q Consensus 1048 L~~A~Lh-d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grT 1125 (1192)
++..++. +.. ......||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++. +++|
T Consensus 129 l~~~gL~~~~~-----------~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~t 197 (287)
T PRK13641 129 LKKVGLSEDLI-----------SKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHT 197 (287)
T ss_pred HHHcCCChhHh-----------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 5666663 221 23355799999999999999999999999999999999999999999999875 4789
Q ss_pred EEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1126 TIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1126 vIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+|++||+++.+. -||+|++|++|++++.|+++++.+.
T Consensus 198 vlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 198 VILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999875 6999999999999999999998764
No 189
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-39 Score=354.78 Aligned_cols=232 Identities=19% Similarity=0.348 Sum_probs=182.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh-cc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL-R~ 978 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++...+.... |.
T Consensus 8 ~~~l~~~~~~-~~~l~~is---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 8 VSGLMMRFGG-LLAVNNVN---LEVREQEI---VSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred EeeEEEEECC-EEEEEeee---eEEcCCeE---EEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 8899999963 57899999 99999888 99999999999999999999999999999999999998876554 45
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
.++|+||++.+|++ |++|||.++.....+.+..... .+ .+ .++.. .....+++.+.++..++.
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~----~~-~~~~~---~~~~~~~~~~~l~~~gl~--- 144 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGL-----LK----TP-AFRRA---ESEALDRAATWLERVGLL--- 144 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhh-----cc----cc-ccccc---hhHHHHHHHHHHHhCChh---
Confidence 69999999999986 9999999864221111111000 00 00 00000 000122344445555443
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST 1135 (1192)
........+||||||||++||||++.+|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.
T Consensus 145 --------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~ 216 (255)
T PRK11300 145 --------EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL 216 (255)
T ss_pred --------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 333455668999999999999999999999999999999999999999999988754 6899999999999
Q ss_pred HHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1136 IIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1136 I~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+.+ ||+|++|++|++++.|+++++...
T Consensus 217 ~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 217 VMGISDRIYVVNQGTPLANGTPEEIRNN 244 (255)
T ss_pred HHHhCCEEEEEECCeEEecCCHHHHhhC
Confidence 865 999999999999999999998653
No 190
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.6e-39 Score=349.12 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=176.3
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS- 975 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s- 975 (1192)
++|++++|+.+ .++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVE---LVVKRGET---IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred EeeeEEEccCCCcceEEEeccE---EEEcCCCE---EEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 88999999753 35899999 99999888 9999999999999999999999999999999999998887654
Q ss_pred --h-cccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 976 --L-RQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 976 --L-R~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
. ++.++|+||++.+|++ |++||+.++.. ..+++ ..++++.++++
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~ 132 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSR------------------------------QSRNGAKALLE 132 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHH------------------------------HHHHHHHHHHH
Confidence 2 3689999999999985 99999986421 01110 12345666778
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTI 1127 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvI 1127 (1192)
..++.+...+.| ..||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+ ++|+|
T Consensus 133 ~~~l~~~~~~~~-----------~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (228)
T PRK10584 133 QLGLGKRLDHLP-----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLI 201 (228)
T ss_pred HcCCHhHhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 888876655443 37999999999999999999999999999999999999999999988743 68999
Q ss_pred EEecChhHHHhcCEEEEEeCCEEEEE
Q psy13234 1128 IVAHRLSTIIHADEILVMHAGEIVER 1153 (1192)
Q Consensus 1128 vIAHRLSTI~~aDrIlVLe~G~IvE~ 1153 (1192)
+|||+++.+..||+|++|++|+++|.
T Consensus 202 ~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 202 LVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred EEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999874
No 191
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=357.62 Aligned_cols=204 Identities=25% Similarity=0.384 Sum_probs=174.2
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~ 974 (1192)
.++ ++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++.
T Consensus 12 ~l~--i~~l~~~~~~-~~il~~is---l~i~~Ge~---~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----- 77 (257)
T PRK11247 12 PLL--LNAVSKRYGE-RTVLNQLD---LHIPAGQF---VAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----- 77 (257)
T ss_pred cEE--EEEEEEEECC-cceeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----
Confidence 355 8999999964 56899999 99999988 9999999999999999999999999999999998763
Q ss_pred hhcccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 975 SLRQAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
.+|++++|+||++.+|+ .|++||+.++..... ++++.++++..++
T Consensus 78 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~----------------------------------~~~~~~~l~~~gl 123 (257)
T PRK11247 78 EAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW----------------------------------RDAALQALAAVGL 123 (257)
T ss_pred HhhCceEEEecCccCCCCCcHHHHHHhcccchH----------------------------------HHHHHHHHHHcCC
Confidence 46789999999999998 699999987531111 2234445577777
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEec
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAH 1131 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAH 1131 (1192)
.+... ....+||||||||++||||++++|+++||||||++||+++.+.+.+.|++.. .++|+|+|||
T Consensus 124 ~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsH 192 (257)
T PRK11247 124 ADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTH 192 (257)
T ss_pred hhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 65432 3346899999999999999999999999999999999999999999998864 3799999999
Q ss_pred ChhHHH-hcCEEEEEeCCEEEEEcCHH
Q psy13234 1132 RLSTII-HADEILVMHAGEIVERGRHE 1157 (1192)
Q Consensus 1132 RLSTI~-~aDrIlVLe~G~IvE~Gthe 1157 (1192)
+++.+. .||+|++|++|++++.|+.+
T Consensus 193 d~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 193 DVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999875 59999999999999998765
No 192
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-39 Score=333.74 Aligned_cols=214 Identities=27% Similarity=0.448 Sum_probs=182.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++|.|+|....- ..+ ..+++|+. +||+||||||||||++++.||..|.+|+|.|||+|...-++. ++-
T Consensus 4 L~~V~~~y~~~~~---~fd---l~v~~ge~---vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RP 72 (231)
T COG3840 4 LDDVRFSYGHLPM---RFD---LTVPAGEI---VAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERP 72 (231)
T ss_pred ccceEEeeCcceE---EEE---EeecCCcE---EEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCC
Confidence 6778888854221 223 67788888 999999999999999999999999999999999999887764 567
Q ss_pred EEEEcCCCcccc-ccHHHHHhccc-cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYAR-INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~-~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
++.+.||.-||. -||++||.+|. |.-.- .....+++..++.++|+.++.
T Consensus 73 VSmlFQEnNLFaHLtV~qNigLGl~P~LkL-----------------------------~a~~r~~v~~aa~~vGl~~~~ 123 (231)
T COG3840 73 VSMLFQENNLFAHLTVAQNIGLGLSPGLKL-----------------------------NAEQREKVEAAAAQVGLAGFL 123 (231)
T ss_pred hhhhhhccccchhhhhhhhhcccCCccccc-----------------------------CHHHHHHHHHHHHHhChhhHh
Confidence 999999999998 59999999984 22100 012345566677999999999
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST 1135 (1192)
.++|. .||||||||+||||+++|+-||++||||.||||+.-..++.+.+.+++. +.|+++|||.++.
T Consensus 124 ~RLP~-----------~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D 192 (231)
T COG3840 124 KRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED 192 (231)
T ss_pred hhCcc-----------ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 99983 5999999999999999999999999999999999999999999888765 5899999999997
Q ss_pred HH-hcCEEEEEeCCEEEEEcCHHHHHhcCc
Q psy13234 1136 II-HADEILVMHAGEIVERGRHEELLERNG 1164 (1192)
Q Consensus 1136 I~-~aDrIlVLe~G~IvE~GtheELL~~~G 1164 (1192)
++ -+|+++++++|+|++.|.-+++++..+
T Consensus 193 a~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 193 AARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 75 599999999999999999999997654
No 193
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=8.1e-39 Score=354.36 Aligned_cols=228 Identities=24% Similarity=0.372 Sum_probs=188.5
Q ss_pred cccceeeecC--------CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 900 MEEDQFGFRK--------GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 900 fenVsFsY~~--------~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
++|++++|.. ++++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++...
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~l~~vs---l~i~~Ge~---~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 80 (267)
T PRK15112 7 VRNLSKTFRYRTGWFRRQTVEAVKPLS---FTLREGQT---LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG 80 (267)
T ss_pred EeceEEEecCCCCcccccccceeeeee---EEecCCCE---EEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC
Confidence 8899999952 246899999 99999998 999999999999999999999999999999999999866
Q ss_pred ChHhhcccEEEEcCCCc--ccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHH
Q psy13234 972 SQASLRQAIGVVPQDTV--LFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp~--LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
+.+..++.|+|+||++. +++ -|+.+|+.+... ..+. ...++++.
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~------------------------------~~~~~~~~ 130 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEP------------------------------EQREKQII 130 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCH------------------------------HHHHHHHH
Confidence 66667788999999985 444 388999875310 0010 01234566
Q ss_pred HHHHHcChH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--
Q psy13234 1046 EAATSADIH-ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-- 1122 (1192)
Q Consensus 1046 ~AL~~A~Lh-d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-- 1122 (1192)
++++..++. +.. +. ....||||||||++||||++++|+||||||||++||+++.+.+.+.|+++.+
T Consensus 131 ~~l~~~~l~~~~~-------~~----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 199 (267)
T PRK15112 131 ETLRQVGLLPDHA-------SY----YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ 199 (267)
T ss_pred HHHHHcCCChHHH-------hc----CchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 777888873 332 22 2347999999999999999999999999999999999999999999998753
Q ss_pred CceEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc--CcHHHHHHHHhh
Q psy13234 1123 SRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER--NGVYASMWIQQN 1174 (1192)
Q Consensus 1123 grTvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~--~G~Ya~L~~~Q~ 1174 (1192)
++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+. +..++++|..+.
T Consensus 200 g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (267)
T PRK15112 200 GISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHF 254 (267)
T ss_pred CcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCCCCHHHHHHHHhcc
Confidence 7899999999999986 999999999999999999999875 356778886543
No 194
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=355.71 Aligned_cols=219 Identities=25% Similarity=0.410 Sum_probs=183.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC--CC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKT--VS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~~--i~ 972 (1192)
++|++++|+. +++++++| +.+.+|+. +||+||||||||||+++|.|+++| ++|+|.+||+++.. .+
T Consensus 7 i~~v~~~~~~-~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~ 79 (258)
T PRK14241 7 VKDLNIYYGS-FHAVEDVN---LNIEPRSV---TAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVD 79 (258)
T ss_pred EeeEEEEECC-Eeeeeeee---EEEcCCcE---EEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccC
Confidence 8899999964 46899999 99999888 999999999999999999999974 69999999999853 45
Q ss_pred hHhhcccEEEEcCCCcccc-ccHHHHHhccccCC---CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFN-NSIKFNIQYARINA---SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~a---sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL 1048 (1192)
...+|+.|+|+||++.+|+ .|++||+.++.... +.+ ..++++.+++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~------------------------------~~~~~~~~~l 129 (258)
T PRK14241 80 PVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKK------------------------------DLDELVEKSL 129 (258)
T ss_pred hHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHH------------------------------HHHHHHHHHH
Confidence 6678999999999999998 59999998652100 010 1133455666
Q ss_pred HHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEE
Q psy13234 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 1128 (1192)
Q Consensus 1049 ~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIv 1128 (1192)
+..++.+.+. ........+||||||||++||||++++|+++||||||++||..+.+.+.+.|++..+++|+|+
T Consensus 130 ~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 202 (258)
T PRK14241 130 RGANLWNEVK-------DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVI 202 (258)
T ss_pred HHcCCchhhh-------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 7777644321 223344568999999999999999999999999999999999999999999999877899999
Q ss_pred EecChhHHH-hcCEEEEEe------CCEEEEEcCHHHHHhc
Q psy13234 1129 VAHRLSTII-HADEILVMH------AGEIVERGRHEELLER 1162 (1192)
Q Consensus 1129 IAHRLSTI~-~aDrIlVLe------~G~IvE~GtheELL~~ 1162 (1192)
|||+++.+. .||+|++|+ +|+|++.|++++++..
T Consensus 203 vsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~~ 243 (258)
T PRK14241 203 VTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSN 243 (258)
T ss_pred EecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHhC
Confidence 999999875 699999997 8999999999999764
No 195
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=356.27 Aligned_cols=220 Identities=28% Similarity=0.393 Sum_probs=184.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecC--CCC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIK--TVS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~--~i~ 972 (1192)
++|++++|+. +++++++| +.+.+|+. +||+|+||||||||+++|.|+++ |++|+|.+||.++. +.+
T Consensus 13 i~~v~~~~~~-~~il~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 13 TENLNVYYGS-FLAVKNVW---LDIPKNQI---TAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred EeeeEEEECC-EEEeecce---EEEcCCCE---EEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 8999999964 46899999 99999988 99999999999999999999986 47999999999985 345
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
...+|++|+|+||++.+|+.|++|||.++....... ...++++.++++.++
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~ 136 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYK-----------------------------GDMDELVERSLRQAA 136 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcc-----------------------------hHHHHHHHHHHHHhC
Confidence 667889999999999999999999998753210000 001233445567777
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecC
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHR 1132 (1192)
+.+.+.. .......+||||||||++||||++++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+
T Consensus 137 l~~~l~~-------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~ 209 (264)
T PRK14243 137 LWDEVKD-------KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209 (264)
T ss_pred chhhHHH-------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 7654432 234556789999999999999999999999999999999999999999999998878999999999
Q ss_pred hhHH-HhcCEEEEEe---------CCEEEEEcCHHHHHhc
Q psy13234 1133 LSTI-IHADEILVMH---------AGEIVERGRHEELLER 1162 (1192)
Q Consensus 1133 LSTI-~~aDrIlVLe---------~G~IvE~GtheELL~~ 1162 (1192)
++.+ ..||+|++|+ +|++++.|+++|+.+.
T Consensus 210 ~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~ 249 (264)
T PRK14243 210 MQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS 249 (264)
T ss_pred HHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence 9987 5689999999 8999999999999764
No 196
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-39 Score=375.82 Aligned_cols=225 Identities=29% Similarity=0.432 Sum_probs=185.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh---
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL--- 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL--- 976 (1192)
.+++.-.|.. ...++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+|+.+.+..++
T Consensus 31 ~~~~~~~~~~-~~~L~~is---l~i~~Gei---~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~ 103 (400)
T PRK10070 31 KEQILEKTGL-SLGVKDAS---LAIEEGEI---FVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103 (400)
T ss_pred HHHHHhhcCC-eEEEEeEE---EEEcCCCE---EEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHH
Confidence 5555555633 35788888 99999888 99999999999999999999999999999999999998887654
Q ss_pred -cccEEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 977 -RQAIGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 977 -R~~Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
|++|+||||++.+|+ .|++|||.++.. ..+.+ ..++++.++++..+
T Consensus 104 ~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~------------------------------~~~~~~~e~L~~~g 153 (400)
T PRK10070 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAE------------------------------ERREKALDALRQVG 153 (400)
T ss_pred HhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHH------------------------------HHHHHHHHHHHHcC
Confidence 468999999999997 599999987531 01111 11345566778888
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEe
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVA 1130 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIA 1130 (1192)
+.+...+.| .+||||||||++||||++.+|+|||||||||+||+.+.+.+++.|+++. .++|+|+||
T Consensus 154 L~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivT 222 (400)
T PRK10070 154 LENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222 (400)
T ss_pred CChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 876655544 3799999999999999999999999999999999999999999998874 479999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC--cHHHHHHHH
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLERN--GVYASMWIQ 1172 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~--G~Ya~L~~~ 1172 (1192)
|+++.+. .||+|++|++|++++.|++++++.+. ...++++..
T Consensus 223 Hd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~~ 267 (400)
T PRK10070 223 HDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRG 267 (400)
T ss_pred CCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHHhc
Confidence 9999875 59999999999999999999998653 234445543
No 197
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=356.09 Aligned_cols=224 Identities=30% Similarity=0.457 Sum_probs=187.9
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeec
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI 968 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI 968 (1192)
+.++ ++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+.+| ++|+|.+||.++
T Consensus 15 ~~l~--~~~l~~~~~~-~~vl~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 15 QKSE--VNKLNFYYGG-YQALKNIN---MMVHEKQV---TALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred ceEE--EEEEEEEECC-eeeeeeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence 4566 9999999974 47899999 99999998 999999999999999999999985 799999999887
Q ss_pred C----CCChHhhcccEEEEcCCCccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHH
Q psy13234 969 K----TVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042 (1192)
Q Consensus 969 ~----~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sde 1042 (1192)
. ..+...+|+.|+|+||++.+|++|++|||.++.. ..+.+ ...++
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~-----------------------------~~~~~ 136 (265)
T PRK14252 86 NILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRR-----------------------------SILEE 136 (265)
T ss_pred cccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChH-----------------------------HHHHH
Confidence 4 3345678999999999999999999999987531 00000 01234
Q ss_pred HHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q psy13234 1043 EVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122 (1192)
Q Consensus 1043 eI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~ 1122 (1192)
++.++++.+++.+.+ ++..+.....||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+
T Consensus 137 ~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 209 (265)
T PRK14252 137 RVENALRNAALWDEV-------KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN 209 (265)
T ss_pred HHHHHHHHcCCchhh-------hHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 555666776664322 2344566778999999999999999999999999999999999999999999999877
Q ss_pred CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1123 SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1123 grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 210 ~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 250 (265)
T PRK14252 210 KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIK 250 (265)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 899999999999985 5999999999999999999998753
No 198
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.9e-39 Score=354.22 Aligned_cols=228 Identities=22% Similarity=0.346 Sum_probs=188.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.
T Consensus 4 ~~~l~~~~~~-~~il~~is---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (256)
T TIGR03873 4 LSRVSWSAGG-RLIVDGVD---VTAPPGSL---TGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76 (256)
T ss_pred EEeEEEEECC-EEEEeeee---EEEcCCcE---EEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhh
Confidence 7889999964 57899999 99999988 99999999999999999999999999999999999999988888999
Q ss_pred EEEEcCCCc-cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTV-LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~-LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|+||++. .++.|++||+.++..... +... .+. ..+++++.++++..++.+...
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~~~---------------~~~-------~~~~~~~~~~l~~~~l~~~~~ 132 (256)
T TIGR03873 77 VALVEQDSDTAVPLTVRDVVALGRIPHR--SLWA---------------GDS-------PHDAAVVDRALARTELSHLAD 132 (256)
T ss_pred eEEecccCccCCCCCHHHHHHhcchhhh--hhcc---------------CCC-------HHHHHHHHHHHHHcCcHhhhc
Confidence 999999985 556899999987632100 0000 000 012345667778877765432
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHH-
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI- 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI- 1136 (1192)
+ ....||||||||++||||++.+|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+
T Consensus 133 ~-----------~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 133 R-----------DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA 201 (256)
T ss_pred C-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2 3457999999999999999999999999999999999999999999998754 68999999999999
Q ss_pred HhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1137 IHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1137 ~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
..||+|++|++|++++.|+++|+.+. ......+
T Consensus 202 ~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 234 (256)
T TIGR03873 202 SYCDHVVVLDGGRVVAAGPPREVLTP-ALIRAVY 234 (256)
T ss_pred HhCCEEEEEeCCCEEEecCHHHhhCH-HHHHHHh
Confidence 46999999999999999999998753 3344444
No 199
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.8e-39 Score=344.14 Aligned_cols=205 Identities=28% Similarity=0.479 Sum_probs=174.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. .++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||+|+.+.+ ..|+.
T Consensus 3 ~~~l~~~~~~---~~~~~s---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~ 71 (213)
T TIGR01277 3 LDKVRYEYEH---LPMEFD---LNVADGEI---VAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRP 71 (213)
T ss_pred EEeeeEEeCC---cceeeE---EEEeCCcE---EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccc
Confidence 7889999963 456888 99999998 9999999999999999999999999999999999997654 46889
Q ss_pred EEEEcCCCccccc-cHHHHHhccc-cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYAR-INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~-~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
++||||++.+|.+ |++||+.++. +..... ..+++++.++++..++.+..
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~l~~~~ 122 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLN-----------------------------AEQQEKVVDAAQQVGIADYL 122 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCcc-----------------------------HHHHHHHHHHHHHcCcHHHh
Confidence 9999999999985 9999998642 110000 01234566677888888776
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST 1135 (1192)
.+.|. .||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.
T Consensus 123 ~~~~~-----------~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~ 191 (213)
T TIGR01277 123 DRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD 191 (213)
T ss_pred hCCcc-----------cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 66553 7999999999999999999999999999999999999999999998753 6899999999998
Q ss_pred HH-hcCEEEEEeCCEEEEEcC
Q psy13234 1136 II-HADEILVMHAGEIVERGR 1155 (1192)
Q Consensus 1136 I~-~aDrIlVLe~G~IvE~Gt 1155 (1192)
+. .||+|++|++|++++.|.
T Consensus 192 ~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 192 ARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHhhcCeEEEEECCeEEEecC
Confidence 76 499999999999999874
No 200
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-39 Score=356.09 Aligned_cols=231 Identities=23% Similarity=0.362 Sum_probs=190.8
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~ 974 (1192)
.++ ++|++++|+. +.+++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++...+..
T Consensus 7 ~l~--i~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 7 RLR--GEQLTLGYGK-YTVAENLT---VEIPDGHF---TAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77 (265)
T ss_pred EEE--EEEEEEEECC-EEEeeecc---eEECCCCE---EEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHH
Confidence 345 8999999974 56899999 99999988 999999999999999999999999999999999999988888
Q ss_pred hhcccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 975 SLRQAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
.+++.|+|+||++.+|. .|++||+.++.....+ .. .+ +. +..++++.++++..++
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~--------------~~---~~-~~------~~~~~~~~~~l~~~~l 133 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQP--------------LF---TR-WR------KEDEEAVTKAMQATGI 133 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccc--------------cc---cC-CC------HHHHHHHHHHHHHcCC
Confidence 88999999999999875 6999999875310000 00 00 00 0123456677788888
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEec
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 1131 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAH 1131 (1192)
.+...+ ....||||||||++||||++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||
T Consensus 134 ~~~~~~-----------~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH 202 (265)
T PRK10253 134 THLADQ-----------SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202 (265)
T ss_pred HHHhcC-----------CcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 765432 3458999999999999999999999999999999999999999999998754 789999999
Q ss_pred ChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1132 RLSTII-HADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1132 RLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
+++.+. -||+|++|++|++++.|+++++... ....+++
T Consensus 203 ~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 241 (265)
T PRK10253 203 DLNQACRYASHLIALREGKIVAQGAPKEIVTA-ELIERIY 241 (265)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhhH-HHHHHHh
Confidence 999775 5999999999999999999998763 2344444
No 201
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-39 Score=349.75 Aligned_cols=198 Identities=29% Similarity=0.437 Sum_probs=171.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++++.+|.. ..+++|+| +.+.+|+. ++|+||||||||||+|++.|+.+|++|+|.+||.++.. -+..
T Consensus 6 i~~v~~~f~~-~~vl~~i~---L~v~~GEf---vsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~-----p~~~ 73 (248)
T COG1116 6 IEGVSKSFGG-VEVLEDIN---LSVEKGEF---VAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG-----PGPD 73 (248)
T ss_pred EEeeEEEeCc-eEEeccce---eEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC-----CCCC
Confidence 7788888876 67899999 99999988 99999999999999999999999999999999998844 3567
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccCC--CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~a--sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++||+|++.||+ -||+||+.++-... +.+ ..++.+.+.|+.+|+.++
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~------------------------------e~~~~a~~~L~~VgL~~~ 123 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKA------------------------------EARERAKELLELVGLAGF 123 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchH------------------------------hHHHHHHHHHHHcCCcch
Confidence 999999999999 79999999874321 111 123456778899999998
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
-.+.| ..||||||||+|||||+..+|+||+||||.||||+.|...+|+-+.+..+ ++|+++|||+.+
T Consensus 124 ~~~~P-----------~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 124 EDKYP-----------HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred hhcCc-----------cccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 87776 36999999999999999999999999999999999999999999987755 499999999987
Q ss_pred H-HHhcCEEEEEeC--CEE
Q psy13234 1135 T-IIHADEILVMHA--GEI 1150 (1192)
Q Consensus 1135 T-I~~aDrIlVLe~--G~I 1150 (1192)
. +.-+|||+||.+ |+|
T Consensus 193 EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 193 EAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHhhhCEEEEecCCCcce
Confidence 5 567999999999 555
No 202
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-39 Score=351.55 Aligned_cols=224 Identities=26% Similarity=0.459 Sum_probs=187.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++|+|..+ ++++||| +.+.+|+. ++|+||+|||||||+|+++|+.+|++|+|.++|.++++... +.+
T Consensus 7 v~nl~v~y~~~-~vl~~i~---l~v~~G~~---~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~ 76 (254)
T COG1121 7 VENLTVSYGNR-PVLEDIS---LSVEKGEI---TALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLR 76 (254)
T ss_pred EeeeEEEECCE-eeeeccE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCe
Confidence 89999999876 6999999 99999988 99999999999999999999999999999999998877543 678
Q ss_pred EEEEcCCC---ccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDT---VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp---~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
||||||.. +=|+-||+|=+.+|+.... ++.... ...+.+++.+||+.+++.++
T Consensus 77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~----------------------g~~~~~--~~~d~~~v~~aL~~Vgm~~~ 132 (254)
T COG1121 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKK----------------------GWFRRL--NKKDKEKVDEALERVGMEDL 132 (254)
T ss_pred EEEcCcccccCCCCCcCHHHHHHccCcccc----------------------cccccc--cHHHHHHHHHHHHHcCchhh
Confidence 99999954 5688999999998753210 000000 01235778888899999987
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLST 1135 (1192)
. |-++|| |||||+||+.|||||..+|++|+|||||+++|+.++..+.+.|+++.+ |||+++|+|+++.
T Consensus 133 ~-------~r~i~~----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~ 201 (254)
T COG1121 133 R-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL 201 (254)
T ss_pred h-------CCcccc----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH
Confidence 5 445664 999999999999999999999999999999999999999999998876 7999999999998
Q ss_pred HH-hcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1136 II-HADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1136 I~-~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
+. .+|+|+.|+ +++...|+++|.+..+ .+.+.+
T Consensus 202 v~~~~D~vi~Ln-~~~~~~G~~~~~~~~~-~l~~~~ 235 (254)
T COG1121 202 VMAYFDRVICLN-RHLIASGPPEEVLTEE-NLEKAF 235 (254)
T ss_pred hHhhCCEEEEEc-CeeEeccChhhccCHH-HHHHHh
Confidence 86 599999995 7788899999988643 344444
No 203
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=361.22 Aligned_cols=360 Identities=21% Similarity=0.218 Sum_probs=266.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 730 VVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGL 809 (1192)
Q Consensus 730 ~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~~~l~~lq~li~~~gl 809 (1192)
.+++...+..-+..+.++......+-.-++.|.|-.|+.|+.|.++.++......+...+.......++..++...-+..
T Consensus 225 ~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~ 304 (604)
T COG4178 225 LIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV 304 (604)
T ss_pred HHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH
Confidence 44444445555556667777777788889999999999999999888887766665444444444444444443333333
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc-cccccccccccccc-ccc
Q psy13234 810 LAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKE-CRTISCICHLTKAV-TRI 887 (1192)
Q Consensus 810 l~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~-~~~~~~~~~v~~~~-~~i 887 (1192)
++-.++++-. ...|+++.|+++.....+.++...+.++...+..+..-.+...|+.+... .+............ ..+
T Consensus 305 v~P~li~ap~-~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~ 383 (604)
T COG4178 305 VLPILIAAPR-YFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRI 383 (604)
T ss_pred HHHHHhccHh-hhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccc
Confidence 3333444444 67899999999999999999999998887777776554444445443310 00000000000000 111
Q ss_pred cc-cccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCe
Q psy13234 888 VL-KRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 966 (1192)
Q Consensus 888 ~l-~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~ 966 (1192)
.. .+.+..+. ++|++..-|.+...+++.+ +.+++|+. +-|.||||||||||+|+|.|+|+--+|+|..-.
T Consensus 384 ~~~~~~~~~i~--~~nl~l~~p~~~~ll~~l~---~~v~~G~~---llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~- 454 (604)
T COG4178 384 DFDDNADHGIT--LENLSLRTPDGQTLLSELN---FEVRPGER---LLITGESGAGKTSLLRALAGLWPWGSGRISMPA- 454 (604)
T ss_pred cccccccceeE--EeeeeEECCCCCeeeccce---eeeCCCCE---EEEECCCCCCHHHHHHHHhccCccCCCceecCC-
Confidence 11 11124566 9999999888888888888 99999999 999999999999999999999999999987641
Q ss_pred ecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHH
Q psy13234 967 NIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046 (1192)
Q Consensus 967 DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~ 1046 (1192)
...+-|+||.|++=.||+||=|+|-++. + +++|+++.+
T Consensus 455 ----------~~~~lflpQ~PY~p~GtLre~l~YP~~~--~------------------------------~~~d~~l~~ 492 (604)
T COG4178 455 ----------DSALLFLPQRPYLPQGTLREALCYPNAA--P------------------------------DFSDAELVA 492 (604)
T ss_pred ----------CCceEEecCCCCCCCccHHHHHhCCCCC--C------------------------------CCChHHHHH
Confidence 1348899999999999999999985421 0 256777888
Q ss_pred HHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceE
Q psy13234 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 1126 (1192)
Q Consensus 1047 AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTv 1126 (1192)
+|.++++.+.+.++.+- +. =..-||+|||||+|+||.++.+|++++|||||||||+++|..+.+.+++.+.+.|+
T Consensus 493 vL~~vgL~~L~~rl~~~-~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tv 567 (604)
T COG4178 493 VLHKVGLGDLAERLDEE-DR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATV 567 (604)
T ss_pred HHHHcCcHHHHHHHhcc-Cc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEE
Confidence 88999999999987432 22 24579999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHHhcCEEEEEe
Q psy13234 1127 IIVAHRLSTIIHADEILVMH 1146 (1192)
Q Consensus 1127 IvIAHRLSTI~~aDrIlVLe 1146 (1192)
|-|+||.....-.++.+-+.
T Consensus 568 ISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 568 ISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred EEeccchhhHHHHhhheeec
Confidence 99999999888888766654
No 204
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.5e-39 Score=349.64 Aligned_cols=211 Identities=24% Similarity=0.384 Sum_probs=177.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+++.|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++...+...+|+.
T Consensus 10 ~~~l~~~~~~-~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 10 LQNVGYLAGD-AKILNNIS---FSLRAGEF---KLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred EeccEEeeCC-ceeeeccE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 8899999964 56899999 99999998 99999999999999999999999999999999999998888888999
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
|+|+||++.+|+.|++||+.++.. . . +. ..+++++.++++..++.+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~-~--------~------------~~---------~~~~~~~~~~l~~~~l~~---- 128 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQ-I--------R------------NQ---------QPDPAIFLDDLERFALPD---- 128 (225)
T ss_pred cEEEecccccccccHHHHHHhHHh-h--------c------------CC---------ChHHHHHHHHHHHcCCCh----
Confidence 999999999999999999986410 0 0 00 001223334445555532
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHH
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~ 1137 (1192)
+........||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.
T Consensus 129 ------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 129 ------TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred ------HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 223445668999999999999999999999999999999999999999999998753 789999999999999
Q ss_pred hcCEEEEEe-CCEEEEEcCHH
Q psy13234 1138 HADEILVMH-AGEIVERGRHE 1157 (1192)
Q Consensus 1138 ~aDrIlVLe-~G~IvE~Gthe 1157 (1192)
.||+|++|+ ++..++.|+|+
T Consensus 203 ~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 203 HADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hCCEEEEEecccchHhhhhhc
Confidence 999999994 67777889996
No 205
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=6e-39 Score=361.79 Aligned_cols=214 Identities=26% Similarity=0.384 Sum_probs=179.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++... ....|++
T Consensus 7 ~~~l~~~~~~-~~~l~~vs---l~i~~Ge~---~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~ 78 (303)
T TIGR01288 7 LVGVSKSYGD-KVVVNDLS---FTIARGEC---FGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVA 78 (303)
T ss_pred EEeEEEEeCC-eEEEccee---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhc
Confidence 8899999964 56899999 99999998 999999999999999999999999999999999998764 3567899
Q ss_pred EEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
|+|+||++.+|. .|++||+.+... ..++++. .+++.++++..++.
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~ll~~~~l~-- 126 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREI------------------------------EAVIPSLLEFARLE-- 126 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHH------------------------------HHHHHHHHHHCCCh--
Confidence 999999999985 699999974211 1122111 12233444555543
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLST 1135 (1192)
+.+++.+ ..||||||||++||||++.+|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.
T Consensus 127 -----~~~~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~ 197 (303)
T TIGR01288 127 -----SKADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197 (303)
T ss_pred -----hHhcCch----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 3345554 3699999999999999999999999999999999999999999998874 47899999999998
Q ss_pred HH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1136 II-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1136 I~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+. .||+|++|++|++++.|+++++.+.
T Consensus 198 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 198 AERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 86 5999999999999999999999754
No 206
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7.5e-39 Score=353.10 Aligned_cols=238 Identities=21% Similarity=0.312 Sum_probs=190.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCeecCCC-----
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQNIKTV----- 971 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~---sGsI~IDG~DI~~i----- 971 (1192)
++|++++|+ ++++++++| +.+.+|+. ++|+||||||||||+++|.|+++|+ +|+|.+||.++...
T Consensus 7 ~~nl~~~~~-~~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~ 79 (262)
T PRK09984 7 VEKLAKTFN-QHQALHAVD---LNIHHGEM---VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79 (262)
T ss_pred EeeEEEEeC-CeEEEecce---EEEcCCcE---EEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccch
Confidence 889999996 457899999 99999988 9999999999999999999999986 49999999998654
Q ss_pred ChHhhcccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 972 SQASLRQAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
+...+|+.++|+||++.+|. .|++||+.++..+..+ ..... .+... +..++++.++++.
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~-------------~~~~~-----~~~~~~~~~~l~~ 139 (262)
T PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTP--FWRTC-------------FSWFT-----REQKQRALQALTR 139 (262)
T ss_pred hHHHHHhheEEEccccccccCCcHHHHHHhhhccccc--chhhh-------------ccccc-----HHHHHHHHHHHHH
Confidence 34567889999999999988 5999999876321100 00000 00000 1123456777788
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEE
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTII 1128 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIv 1128 (1192)
.++.+.+.+ ....||||||||++||||++.+|++|||||||++||.++.+.+.+.|++..+ ++|+|+
T Consensus 140 ~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 208 (262)
T PRK09984 140 VGMVHFAHQ-----------RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVV 208 (262)
T ss_pred cCCHHHHhC-----------CccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 887654432 3347999999999999999999999999999999999999999999998863 799999
Q ss_pred EecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhccC
Q psy13234 1129 VAHRLSTI-IHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTKQ 1177 (1192)
Q Consensus 1129 IAHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~~~ 1177 (1192)
|||+++.+ ..||+|++|++|++++.|+++++ .+....++|...+.++
T Consensus 209 ~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~--~~~~~~~~~~~~~~~~ 256 (262)
T PRK09984 209 TLHQVDYALRYCERIVALRQGHVFYDGSSQQF--DNERFDHLYRSINRVE 256 (262)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh--ccHHHHHHHhhhhccc
Confidence 99999975 56999999999999999999996 3346778887665443
No 207
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-39 Score=354.52 Aligned_cols=220 Identities=27% Similarity=0.395 Sum_probs=185.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC--CC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKT--VS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~~--i~ 972 (1192)
.++.++.|. +.++++++| +.+.+|+. ++|+|+||||||||+++|.|+++| ++|+|.+||+|+.. .+
T Consensus 11 ~~~~~~~~~-~~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 11 CKLDKIFYG-NFMAVRDSH---VPIRKNEI---TGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred EEeEEEEeC-CEEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 666777775 356889999 99999999 999999999999999999999987 79999999999864 34
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
...+|+.|+|+||++.+|+.|++|||.++..... +. +..++++.++++.++
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~-----------------------~~------~~~~~~~~~~l~~~~ 134 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNR-----------------------YK------GDLGDRVKHALQGAA 134 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcC-----------------------ch------HHHHHHHHHHHHHcC
Confidence 4577889999999999999999999987631000 00 011345666778888
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecC
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHR 1132 (1192)
+.+.+.. ..++...+||||||||++||||++++|+++|||||||+||+.+.+.+.+.|++..+++|+|+|||+
T Consensus 135 l~~~i~~-------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~ 207 (261)
T PRK14263 135 LWDEVKD-------KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207 (261)
T ss_pred Cchhhhh-------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 7655432 234567789999999999999999999999999999999999999999999998778999999999
Q ss_pred hhHHH-hcCEEEEEe--------CCEEEEEcCHHHHHhc
Q psy13234 1133 LSTII-HADEILVMH--------AGEIVERGRHEELLER 1162 (1192)
Q Consensus 1133 LSTI~-~aDrIlVLe--------~G~IvE~GtheELL~~ 1162 (1192)
++.+. .||+|++|+ +|++++.|+++++.+.
T Consensus 208 ~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~~ 246 (261)
T PRK14263 208 MQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN 246 (261)
T ss_pred HHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHhC
Confidence 99875 599999996 8999999999999864
No 208
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.4e-39 Score=362.33 Aligned_cols=214 Identities=25% Similarity=0.388 Sum_probs=181.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +.+++++| +.+.+|+. +||+||+|||||||+++|+|+++|++|+|+++|.|+...+ ...|++
T Consensus 10 i~~l~k~~~~-~~~l~~vs---l~i~~Gei---~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 10 FRNVEKRYGD-KLVVDGLS---FHVQRGEC---FGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred EEeEEEEECC-eEEEecce---EEEeCCcE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 8999999964 56899999 99999988 9999999999999999999999999999999999998755 457899
Q ss_pred EEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
||||||++.+|. .|++||+.|... ..++++. .+++.++++..++
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~l--- 128 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAA------------------------------RALVPPLLEFAKL--- 128 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHH------------------------------HHHHHHHHHHcCC---
Confidence 999999999986 699999985321 1111111 1223344455544
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLST 1135 (1192)
++..+++++ +||||||||++||||++.+|++|+|||||++||+++.+.+.+.|+++.+ ++|+|++||+++.
T Consensus 129 ----~~~~~~~~~----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e 200 (306)
T PRK13537 129 ----ENKADAKVG----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 200 (306)
T ss_pred ----chHhcCchh----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 344566664 6999999999999999999999999999999999999999999998754 6999999999999
Q ss_pred HHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1136 IIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1136 I~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+.. ||+|++|++|++++.|+++++.+.
T Consensus 201 ~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 201 AERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 865 999999999999999999999754
No 209
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-39 Score=365.48 Aligned_cols=226 Identities=26% Similarity=0.392 Sum_probs=185.0
Q ss_pred cccceeeecC---------CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC
Q psy13234 900 MEEDQFGFRK---------GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 970 (1192)
Q Consensus 900 fenVsFsY~~---------~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~ 970 (1192)
++|++++|+. ...+++++| +.+.+|+. +||||+||||||||+++|+|+++|++|+|.+||+|+.+
T Consensus 8 v~nl~~~~~~~~~~~~~~~~~~~l~~vs---l~i~~Ge~---~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~ 81 (327)
T PRK11308 8 AIDLKKHYPVKRGLFKPERLVKALDGVS---FTLERGKT---LAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81 (327)
T ss_pred EeeeEEEEcCCCCccccCCceeEEeeeE---EEECCCCE---EEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCc
Confidence 7888888863 235789998 99999988 99999999999999999999999999999999999998
Q ss_pred CCh---HhhcccEEEEcCCCc--ccc-ccHHHHHhccc---cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccH
Q psy13234 971 VSQ---ASLRQAIGVVPQDTV--LFN-NSIKFNIQYAR---INASEEEVKEAATSADIHERILSFPDGYDTQYARINASE 1041 (1192)
Q Consensus 971 i~~---~sLR~~Ig~VPQDp~--LFn-GTIreNI~~G~---~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sd 1041 (1192)
++. ..+|++|+||||||. |++ -||.+|+...- ...+.+ ...
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~------------------------------~~~ 131 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAA------------------------------ERR 131 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHH------------------------------HHH
Confidence 875 357889999999994 555 48999985320 001111 123
Q ss_pred HHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q psy13234 1042 EEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC 1121 (1192)
Q Consensus 1042 eeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~ 1121 (1192)
+++.++++..++.+ ++++.. ...||||||||++|||||+.+|++||+|||||+||..+.+.|.+.|+++.
T Consensus 132 ~~~~~~l~~~gL~~------~~~~~~----p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~ 201 (327)
T PRK11308 132 EKALAMMAKVGLRP------EHYDRY----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ 201 (327)
T ss_pred HHHHHHHHHCCCCh------HHhcCC----CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 45566778888743 233443 34799999999999999999999999999999999999999999998875
Q ss_pred C--CceEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC-cHHHH-HHH
Q psy13234 1122 A--SRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERN-GVYAS-MWI 1171 (1192)
Q Consensus 1122 ~--grTvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~-L~~ 1171 (1192)
+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|+.++++++. ..|.+ ++.
T Consensus 202 ~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 202 QELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCCHHHHHHHH
Confidence 4 7899999999999974 9999999999999999999998753 44655 444
No 210
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-39 Score=352.69 Aligned_cols=215 Identities=27% Similarity=0.394 Sum_probs=184.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|+|+++|++|+|.+||.++..++...++++
T Consensus 5 ~~~l~~~~~~-~~il~~is---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 5 ARNLSVRLGG-RTLLDDVS---LTLRPGEV---VAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77 (258)
T ss_pred EEeEEEEeCC-eeeeeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhh
Confidence 7889999964 56899999 99999998 99999999999999999999999999999999999998888888899
Q ss_pred EEEEcCCCcc-ccccHHHHHhccccCC--CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVL-FNNSIKFNIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~L-FnGTIreNI~~G~~~a--sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+ ++.|++||+.++.... +.+ ..++++.++++..++.+.
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~l~~~ 127 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRA------------------------------EDDALVAAALAQVDLAHL 127 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhcccCCCcH------------------------------HHHHHHHHHHHHcCCHhH
Confidence 9999999987 6789999998753110 000 012345566677777654
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEE
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLL------KAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTII 1128 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALL------rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIv 1128 (1192)
..+ ....||||||||++||||++ ++|+++|||||||+||+++.+.+.+.|+++. +++|+|+
T Consensus 128 ~~~-----------~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 196 (258)
T PRK13548 128 AGR-----------DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIV 196 (258)
T ss_pred hcC-----------CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 332 23589999999999999999 6999999999999999999999999999875 4799999
Q ss_pred EecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1129 VAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1129 IAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 197 ~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (258)
T PRK13548 197 VLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTP 231 (258)
T ss_pred EECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhCh
Confidence 999999886 6999999999999999999998764
No 211
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.5e-39 Score=348.53 Aligned_cols=223 Identities=22% Similarity=0.286 Sum_probs=177.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCeecCCCChHhh-
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVSQASL- 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl--ydp~sGsI~IDG~DI~~i~~~sL- 976 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+ ++|++|+|.+||+++...+....
T Consensus 3 ~~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR01978 3 IKDLHVSVED-KEILKGVN---LTVKKGEI---HAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75 (243)
T ss_pred EeeEEEEECC-EEEEeccc---eEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhh
Confidence 7899999964 56899999 99999998 999999999999999999999 47999999999999998887664
Q ss_pred cccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCC-CCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 977 RQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPD-GYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd-~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
+..++||||++.+|++ |++||+.+...... ... ++ .++. ...++++.++++..++.
T Consensus 76 ~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~-----~~~------------~~~~~~~-----~~~~~~~~~~l~~~~l~ 133 (243)
T TIGR01978 76 RAGLFLAFQYPEEIPGVSNLEFLRSALNARR-----SAR------------GEEPLDL-----LDFLKLLKAKLALLGMD 133 (243)
T ss_pred ccceEeeeccccccCCcCHHHHHHHHHHHhh-----ccc------------ccccccH-----HHHHHHHHHHHHHcCCc
Confidence 4569999999999986 89999975421000 000 00 0000 00123455666666664
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRL 1133 (1192)
+.. .+..++ ..||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|+|||++
T Consensus 134 ~~~------~~~~~~---~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 134 EEF------LNRSVN---EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred hhh------cccccc---cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 211 222222 24999999999999999999999999999999999999999999998754 69999999999
Q ss_pred hHHHh--cCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1134 STIIH--ADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1134 STI~~--aDrIlVLe~G~IvE~GtheELL 1160 (1192)
+.+.. ||+|++|++|++++.|++++..
T Consensus 205 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 205 RLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99976 7999999999999999998644
No 212
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-39 Score=352.47 Aligned_cols=227 Identities=25% Similarity=0.410 Sum_probs=186.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC------eecCCCCh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN------QNIKTVSQ 973 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG------~DI~~i~~ 973 (1192)
+++++++|+. +++++++| +.+.+|+. ++|+|++|||||||+++|.|+++|++|+|.++| +|+.+.+.
T Consensus 13 ~~~~~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 13 ISRLYLYIND-KAILKDIT---IKIPNNSI---FGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred eeeEEEecCC-ceeEeceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 8999999964 56899999 99999998 999999999999999999999999997666655 67777777
Q ss_pred HhhcccEEEEcCCCccccc-cHHHHHhccccC--C-CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDTVLFNN-SIKFNIQYARIN--A-SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~~--a-sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
..+|+.++|+||++.+|.+ |++|||.++... . ++++. .+++.++++
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~------------------------------~~~~~~~~~ 135 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI------------------------------KKIVEECLR 135 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHH------------------------------HHHHHHHHH
Confidence 8899999999999999986 999999875321 1 11111 122345556
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV 1129 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvI 1129 (1192)
..++.+.+. ....+.+..||||||||++||||++++|++++|||||++||..+++.+.+.|.++.+++|+|+|
T Consensus 136 ~~~l~~~~~-------~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilv 208 (257)
T PRK14246 136 KVGLWKEVY-------DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIV 208 (257)
T ss_pred HcCCCccch-------hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEE
Confidence 666654331 1223456689999999999999999999999999999999999999999999998778999999
Q ss_pred ecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHHH
Q psy13234 1130 AHRLSTI-IHADEILVMHAGEIVERGRHEELLERN-GVYASMW 1170 (1192)
Q Consensus 1130 AHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L~ 1170 (1192)
||+++.+ ..||++++|++|++++.|+++|+.+.. ..|.+.+
T Consensus 209 sh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 209 SHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKY 251 (257)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCcHHHHHH
Confidence 9999998 569999999999999999999998653 3355443
No 213
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-39 Score=351.71 Aligned_cols=220 Identities=29% Similarity=0.411 Sum_probs=182.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCeecCC--CC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD--V---ESGDIFIDNQNIKT--VS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd--p---~sGsI~IDG~DI~~--i~ 972 (1192)
++|+++.|+. +++++++| +++.+|+. +||+|+||||||||+++|.|+++ | ++|+|.+||+++.. .+
T Consensus 8 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 8 SSDVHLFYGK-FEALKGID---LDFNQNEI---TALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred EEeEEEEECC-eeEEecce---EEEcCCCE---EEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 8999999974 57899999 99999888 99999999999999999999975 5 58999999999864 34
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
...+|+.++|+||++.+|+.|+++|+.++.. +..+++ ..++++.++++.
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~ 131 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKA-----------------------------VLDEAVETSLKQ 131 (252)
T ss_pred HHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHH-----------------------------HHHHHHHHHHHH
Confidence 5577889999999999999999999986521 100000 112334455566
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
+++.+.+ ..........||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+++|+|+||
T Consensus 132 ~~l~~~i-------~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 204 (252)
T PRK14255 132 AAIWDEV-------KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVT 204 (252)
T ss_pred cCCccch-------hhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 6654332 222344556899999999999999999999999999999999999999999999887779999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+++.+. .||+|++|++|++++.|+.++....
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 205 HSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999986 5999999999999999999998754
No 214
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-39 Score=358.48 Aligned_cols=222 Identities=31% Similarity=0.500 Sum_probs=185.3
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT 970 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~~ 970 (1192)
++ +++++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++ |++|+|.+||.++.+
T Consensus 40 l~--i~~l~~~~~~-~~il~~is---~~i~~Ge~---~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 40 IE--ARDLNVFYGD-EQALDDVS---MDIPENQV---TAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred EE--EEEEEEEECC-EeeEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 55 8999999964 56899999 99999988 99999999999999999999997 689999999999864
Q ss_pred --CChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHH
Q psy13234 971 --VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048 (1192)
Q Consensus 971 --i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL 1048 (1192)
.+...+|++++||||++.+|+.|++|||.++.... +.. ...++++.+++
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~-----------------------~~~------~~~~~~~~~~l 161 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQ-----------------------GYD------GDIDERVEESL 161 (285)
T ss_pred cccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHc-----------------------CCc------HHHHHHHHHHH
Confidence 34567889999999999999999999998652100 000 00134566666
Q ss_pred HHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEE
Q psy13234 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 1128 (1192)
Q Consensus 1049 ~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIv 1128 (1192)
+..++.+.+.. ........||||||||++||||++++|+|||||||||+||.++.+.+.+.|+++.+++|+|+
T Consensus 162 ~~~~l~~~i~~-------~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii 234 (285)
T PRK14254 162 RRAALWDEVKD-------QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVI 234 (285)
T ss_pred HHcCCCchhHH-------HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 77776433321 23455668999999999999999999999999999999999999999999999877799999
Q ss_pred EecChhHHHh-cCEEE-EEeCCEEEEEcCHHHHHhc
Q psy13234 1129 VAHRLSTIIH-ADEIL-VMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1129 IAHRLSTI~~-aDrIl-VLe~G~IvE~GtheELL~~ 1162 (1192)
|||+++.+.. ||+++ +|++|+|++.|+++++.++
T Consensus 235 ~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 235 VTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred EeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence 9999999865 99975 5799999999999998754
No 215
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=8.1e-39 Score=365.05 Aligned_cols=228 Identities=24% Similarity=0.349 Sum_probs=184.0
Q ss_pred cccceeeecC---CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCeecCCCCh
Q psy13234 900 MEEDQFGFRK---GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 900 fenVsFsY~~---~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~---sGsI~IDG~DI~~i~~ 973 (1192)
++|++++|+. ...+++++| +.+.+|+. +||||+||||||||+++|+|+++|+ +|+|.+||.|+.+++.
T Consensus 15 i~~l~~~~~~~~~~~~~l~~vs---l~i~~Ge~---~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVNDLN---FSLRAGET---LGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred EeCeEEEEecCCCCEEEEeeeE---EEEcCCCE---EEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 8899999963 245889999 99999988 9999999999999999999999996 9999999999999987
Q ss_pred Hhhc----ccEEEEcCCC--cccc-ccHHHHHhccc---cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHH
Q psy13234 974 ASLR----QAIGVVPQDT--VLFN-NSIKFNIQYAR---INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE 1043 (1192)
Q Consensus 974 ~sLR----~~Ig~VPQDp--~LFn-GTIreNI~~G~---~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdee 1043 (1192)
+++| ++|+|||||| .|++ -|+.+|+...- .+.+.++. .++
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~------------------------------~~~ 138 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEA------------------------------FEE 138 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHH------------------------------HHH
Confidence 7653 5899999998 4554 57888875310 01111111 123
Q ss_pred HHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-
Q psy13234 1044 VKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA- 1122 (1192)
Q Consensus 1044 I~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~- 1122 (1192)
+.+.|+..++ |++++ .++.....||||||||++||||++.+|++||+|||||+||..+.+.|.+.|+++.+
T Consensus 139 ~~~~L~~vgL-------~~~~~-~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (330)
T PRK09473 139 SVRMLDAVKM-------PEARK-RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210 (330)
T ss_pred HHHHHHHcCC-------CChHH-HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 3444555544 44332 24666778999999999999999999999999999999999999999999988755
Q ss_pred -CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc-CcHHHH-HHH
Q psy13234 1123 -SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER-NGVYAS-MWI 1171 (1192)
Q Consensus 1123 -grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~-L~~ 1171 (1192)
+.|+|+|||+++.+. -||+|+||++|+|+|.|+++++.+. ...|.+ ++.
T Consensus 211 ~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 211 FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 789999999999986 5999999999999999999999874 345655 443
No 216
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-39 Score=343.32 Aligned_cols=203 Identities=23% Similarity=0.424 Sum_probs=169.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+++.|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++.. ..|++
T Consensus 3 ~~~l~~~~~~-~~~l~~v~---~~i~~G~~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~ 71 (210)
T cd03269 3 VENVTKRFGR-VTALDDIS---FSVEKGEI---FGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNR 71 (210)
T ss_pred EEEEEEEECC-EEEEeeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHcc
Confidence 7888899863 56899999 99999998 99999999999999999999999999999999998753 56789
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+|++ |++||+.++.. +.+.+ ..++++.++++..++.+.
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~l~~~ 121 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE------------------------------EARRRIDEWLERLELSEY 121 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChH------------------------------HHHHHHHHHHHHcCChHH
Confidence 9999999999985 99999986421 00100 112344555566666543
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLST 1135 (1192)
. .....+||||||||++||||++++|+++||||||++||+++.+.+.+.|++.. +++|+|+|||+++.
T Consensus 122 ~-----------~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 122 A-----------NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred H-----------hCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 3 23345799999999999999999999999999999999999999999998875 46899999999998
Q ss_pred HHh-cCEEEEEeCCEEEEEc
Q psy13234 1136 IIH-ADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1136 I~~-aDrIlVLe~G~IvE~G 1154 (1192)
+.. ||+|++|++|++++.|
T Consensus 191 ~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 191 VEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHhhhEEEEEeCCEEEecC
Confidence 864 9999999999998865
No 217
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-39 Score=368.93 Aligned_cols=208 Identities=26% Similarity=0.415 Sum_probs=175.4
Q ss_pred cceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC----ChHhhc
Q psy13234 902 EDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----SQASLR 977 (1192)
Q Consensus 902 nVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i----~~~sLR 977 (1192)
|++++|.. + . .++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||+++.+. +....|
T Consensus 5 ~l~k~~~~-~-~-~~vs---l~i~~Ge~---~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 5 NFKQQLGD-L-C-LTVN---LTLPAQGI---TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred EEEEEeCC-E-E-EEEE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 66777753 2 2 2777 99998888 999999999999999999999999999999999998753 244568
Q ss_pred ccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 978 QAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||||++.+|+ .|++|||.|+....++ +++.++++..++.+.
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~----------------------------------~~~~~~l~~~gl~~~ 121 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMV----------------------------------AQFDKIVALLGIEPL 121 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhH----------------------------------HHHHHHHHHcCCchh
Confidence 89999999999997 5999999987432222 334445577777655
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+.| .+||||||||++||||++++|+++|||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++
T Consensus 122 ~~~~~-----------~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~ 190 (352)
T PRK11144 122 LDRYP-----------GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD 190 (352)
T ss_pred hhCCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 44433 57999999999999999999999999999999999999999999988754 689999999999
Q ss_pred HHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1135 TII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
.+. .||+|++|++|++++.|+++++..+.
T Consensus 191 ~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 191 EILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred HHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 775 59999999999999999999998653
No 218
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-38 Score=346.96 Aligned_cols=212 Identities=29% Similarity=0.485 Sum_probs=181.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++++++.|+. .++++++ +.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. ++.
T Consensus 3 ~~~l~~~~~~--~~l~~is---~~i~~Ge~---~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~--~~~ 72 (235)
T cd03299 3 VENLSKDWKE--FKLKNVS---LEVERGDY---FVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72 (235)
T ss_pred eEeEEEEeCC--ceeeeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChh--HcC
Confidence 7788898864 3789999 99999988 999999999999999999999999999999999999876653 689
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccCC--CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~a--sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+|+ .|++||+.++.... +.. ..++++.++++..++.+.
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~l~~~ 122 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKK------------------------------EIERKVLEIAEMLGIDHL 122 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHH------------------------------HHHHHHHHHHHHcCChhH
Confidence 999999999995 79999998753210 111 123445566788888766
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
+.+.| ..||||||||++||||++++|++++|||||++||.++.+.+.+.|++..+ ++|+|++||++.
T Consensus 123 ~~~~~-----------~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 123 LNRKP-----------ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred HhcCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 54443 47999999999999999999999999999999999999999999998754 799999999999
Q ss_pred HHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1135 TIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1135 TI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.+.. ||+|++|++|++++.|+++++.+.
T Consensus 192 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 192 EAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 8875 999999999999999999998865
No 219
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-39 Score=357.82 Aligned_cols=220 Identities=30% Similarity=0.427 Sum_probs=182.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCCC--C
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKTV--S 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~~i--~ 972 (1192)
+++++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+.+ |++|+|.+||+++... +
T Consensus 42 ~~~l~~~~~~-~~il~~vs---l~i~~Ge~---~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 42 AKNFSIYYGE-FEAVKKVN---ADILSKYV---TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred EeeeEEEECC-EEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 8999999964 46889999 99999988 99999999999999999999865 4999999999998653 3
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
...+|++|+||||++.+|+.|++|||.++.. ..++++ ..++++.++++.
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~ 165 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKK-----------------------------QLEEIVEKSLRK 165 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHH-----------------------------HHHHHHHHHHHH
Confidence 3467899999999999999999999987631 011000 012334455566
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
.++.+.+. +.+ ......||||||||++||||++++|++|||||||++||.++.+.+.+.|+++.+++|+|++|
T Consensus 166 ~~l~~~l~---~~~----~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivs 238 (286)
T PRK14275 166 AALWDEVS---DRL----DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVT 238 (286)
T ss_pred hCCccchh---hHh----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 66543221 122 34566899999999999999999999999999999999999999999999987779999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+++.+. .||+|++|++|++++.|+++++.++
T Consensus 239 H~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 239 HNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999986 5999999999999999999999865
No 220
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.1e-38 Score=359.34 Aligned_cols=204 Identities=26% Similarity=0.407 Sum_probs=173.3
Q ss_pred CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccc
Q psy13234 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990 (1192)
Q Consensus 911 ~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LF 990 (1192)
+++++++| +.+.+|+. +||+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++|||+||++.+|
T Consensus 6 ~~~l~~vs---~~i~~Ge~---~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 6 FKAVDGVN---FKVREGEV---FGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeEEeeee---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 46889998 99999988 99999999999999999999999999999999999976 4467789999999999999
Q ss_pred cc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCccc
Q psy13234 991 NN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQ 1067 (1192)
Q Consensus 991 nG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~ 1067 (1192)
.+ |++||+.+... ..+.+ ..++++.++++..++.+.. ++.
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~l~~~~-------~~~ 121 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKD------------------------------EAEERAEELLELFELGEAA-------DRP 121 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHH------------------------------HHHHHHHHHHHHcCChhHh-------CCc
Confidence 86 99999986421 01111 1123455666777765432 333
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH-hcCEEEEE
Q psy13234 1068 VGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII-HADEILVM 1145 (1192)
Q Consensus 1068 VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~-~aDrIlVL 1145 (1192)
...||||||||++||||++++|++|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+. .||+|++|
T Consensus 122 ----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l 197 (302)
T TIGR01188 122 ----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAII 197 (302)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 34799999999999999999999999999999999999999999999875 4699999999999986 59999999
Q ss_pred eCCEEEEEcCHHHHHhc
Q psy13234 1146 HAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1146 e~G~IvE~GtheELL~~ 1162 (1192)
++|++++.|+++++.++
T Consensus 198 ~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 198 DHGRIIAEGTPEELKRR 214 (302)
T ss_pred ECCEEEEECCHHHHHHh
Confidence 99999999999999764
No 221
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-39 Score=343.00 Aligned_cols=233 Identities=26% Similarity=0.421 Sum_probs=195.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC---hHhh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~---~~sL 976 (1192)
++|++..||.++..+++|| +.+++||. |||+||||||||||+|.|.|+.+|++|+|.++|.++...+ ..++
T Consensus 6 ~~nl~k~yp~~~~aL~~Vn---l~I~~GE~---VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVN---LEINQGEM---VAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred EeeeeeecCCCceeeeeEe---EEeCCCcE---EEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 8999999999999999999 99999999 9999999999999999999999999999999999999888 7788
Q ss_pred cccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 977 RQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
|++||+++|++-|-+. |+.+|+..|+.+... .++- ++.++. ..+..+..++|+..|+.|
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s--~~~s---------lfglfs---------k~dk~~Al~aLervgi~~ 139 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTS--TWRS---------LFGLFS---------KEDKAQALDALERVGILD 139 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccch--HHHH---------HhCCCC---------HHHHHHHHHHHHHcCcHH
Confidence 9999999999999984 999999888643210 1111 111111 123445667888898887
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRL 1133 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRL 1133 (1192)
.-. .+-.+|||||+||+||||||.++|+|++-|||+|+||+++.++|++.|++.. .|.|+|+.-|.+
T Consensus 140 ~A~-----------qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v 208 (258)
T COG3638 140 KAY-----------QRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV 208 (258)
T ss_pred HHH-----------HHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 653 3456899999999999999999999999999999999999999999998764 469999999999
Q ss_pred hHHH-hcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1134 STII-HADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1134 STI~-~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
.+.+ .||||+-|++|+|+-.|+.+||-+. ...+.|.
T Consensus 209 dlA~~Y~~Riigl~~G~ivfDg~~~el~~~--~~~~iYg 245 (258)
T COG3638 209 DLAKKYADRIIGLKAGRIVFDGPASELTDE--ALDEIYG 245 (258)
T ss_pred HHHHHHHhhheEecCCcEEEeCChhhhhHH--HHHHHhc
Confidence 9875 5999999999999999999996543 3444443
No 222
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.5e-39 Score=334.32 Aligned_cols=175 Identities=33% Similarity=0.556 Sum_probs=162.9
Q ss_pred cccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|++++|+.. +++++++| +.+.+|+. ++|+||+|||||||+++|+|+++|++|+|.+||.++... ...+|+
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~---~~i~~Ge~---~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~ 75 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLS---LELKQGEK---IALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSS 75 (178)
T ss_pred EEEEEEEeCCCCccceEEEE---EEEcCCCE---EEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHh
Confidence 78899999754 46899999 99999999 999999999999999999999999999999999998776 677899
Q ss_pred cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
.++|+||++.+|+.|++|||
T Consensus 76 ~i~~~~q~~~~~~~tv~~~i------------------------------------------------------------ 95 (178)
T cd03247 76 LISVLNQRPYLFDTTLRNNL------------------------------------------------------------ 95 (178)
T ss_pred hEEEEccCCeeecccHHHhh------------------------------------------------------------
Confidence 99999999999999998885
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~ 1138 (1192)
...||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+++|+|++||+++.+..
T Consensus 96 -------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 96 -------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred -------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 2369999999999999999999999999999999999999999999988778999999999999999
Q ss_pred cCEEEEEeCCEEEEEc
Q psy13234 1139 ADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1139 aDrIlVLe~G~IvE~G 1154 (1192)
||++++|++|++++.|
T Consensus 163 ~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 163 MDKILFLENGKIIMQG 178 (178)
T ss_pred CCEEEEEECCEEEecC
Confidence 9999999999999865
No 223
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.2e-38 Score=348.66 Aligned_cols=224 Identities=24% Similarity=0.349 Sum_probs=179.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCee-----cCCCChH
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN-----IKTVSQA 974 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~D-----I~~i~~~ 974 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||++ +.+.+..
T Consensus 9 ~~~l~~~~~~-~~il~~is---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 9 VRGLTKLYGP-RKGCRDVS---FDLYPGEV---LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred EeeeEEEcCC-ceeeeeee---EEEeCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 8999999964 57899999 99999998 99999999999999999999999999999999999 8777665
Q ss_pred h----hcccEEEEcCCCc--ccc-ccHHHHHhcccc--C-CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 975 S----LRQAIGVVPQDTV--LFN-NSIKFNIQYARI--N-ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 975 s----LR~~Ig~VPQDp~--LFn-GTIreNI~~G~~--~-asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
. .|+.++||||++. ++. -|+.+||.+... . .+.++ .++++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------------~~~~~ 131 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGD------------------------------IRATA 131 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHH------------------------------HHHHH
Confidence 4 3668999999984 333 488899864210 0 00001 01222
Q ss_pred HHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--
Q psy13234 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-- 1122 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-- 1122 (1192)
.++++..++. ++.....+..||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+
T Consensus 132 ~~~l~~~~l~----------~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 201 (258)
T PRK11701 132 GDWLERVEID----------AARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201 (258)
T ss_pred HHHHHHcCCC----------hhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 3333443332 1234566778999999999999999999999999999999999999999999988754
Q ss_pred CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHHH
Q psy13234 1123 SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERN-GVYASMW 1170 (1192)
Q Consensus 1123 grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L~ 1170 (1192)
++|+|+|||+++.+. .||+|++|++|++++.|+++++..+. ..|.+.+
T Consensus 202 ~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 202 GLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPYTQLL 251 (258)
T ss_pred CcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCCHHHHHH
Confidence 789999999999997 59999999999999999999998543 3465444
No 224
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=351.69 Aligned_cols=222 Identities=28% Similarity=0.438 Sum_probs=185.9
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCeecC
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIK 969 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~-----sGsI~IDG~DI~ 969 (1192)
.++ ++|++++|+. +.+++++| +.+.+|+. +||+|+||||||||+++|.|+++|+ +|+|.+||+|+.
T Consensus 7 ~l~--~~nl~~~~~~-~~il~~is---~~i~~Ge~---~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIK--VNNLSFYYDT-QKILEGVS---MEIYQSKV---TAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEE--EeeEEEEeCC-eeEeeceE---EEEcCCcE---EEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhh
Confidence 456 8999999964 46899999 99999999 9999999999999999999999985 899999999985
Q ss_pred C--CChHhhcccEEEEcCCCccccccHHHHHhccccCC---CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 970 T--VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINA---SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 970 ~--i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~a---sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
. .+...+|+.++|+||++.+|+.|++||+.++.... ++++ .++++
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~------------------------------~~~~~ 127 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE------------------------------IDDIV 127 (261)
T ss_pred ccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHH------------------------------HHHHH
Confidence 3 45567899999999999999999999998652110 1101 12344
Q ss_pred HHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--C
Q psy13234 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--A 1122 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~ 1122 (1192)
.++++..++.+++.. ..+.....||||||||++||||++++|+++||||||++||.++.+.+.+.|++.. +
T Consensus 128 ~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~ 200 (261)
T PRK14258 128 ESALKDADLWDEIKH-------KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS 200 (261)
T ss_pred HHHHHHcCCcchhhh-------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 556677776544432 2345567899999999999999999999999999999999999999999998854 4
Q ss_pred CceEEEEecChhHHH-hcCEEEEEeC-----CEEEEEcCHHHHHhc
Q psy13234 1123 SRTTIIVAHRLSTII-HADEILVMHA-----GEIVERGRHEELLER 1162 (1192)
Q Consensus 1123 grTvIvIAHRLSTI~-~aDrIlVLe~-----G~IvE~GtheELL~~ 1162 (1192)
++|+|+|||+++.+. .||+|++|++ |++++.|+++++...
T Consensus 201 ~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 201 ELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS 246 (261)
T ss_pred CCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhC
Confidence 799999999999886 5899999999 999999999999764
No 225
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.4e-38 Score=358.49 Aligned_cols=214 Identities=20% Similarity=0.378 Sum_probs=182.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+ ++.+++++| +.+.+|+. +||+||+|||||||+++|.|+++|++|+|.+||.++.+ +...+|++
T Consensus 5 ~~~l~~~~~-~~~~l~~is---~~i~~Gei---~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ 76 (301)
T TIGR03522 5 VSSLTKLYG-TQNALDEVS---FEAQKGRI---VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRN 76 (301)
T ss_pred EEEEEEEEC-CEEEEEEeE---EEEeCCeE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhc
Confidence 889999996 356899999 99999998 99999999999999999999999999999999999977 44678999
Q ss_pred EEEEcCCCccccc-cHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
+||+||++.+|.+ |++||+.+.... .+.++ .++++.++++..++.+.
T Consensus 77 ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~gl~~~ 126 (301)
T TIGR03522 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQL------------------------------LKQRVEEMIELVGLRPE 126 (301)
T ss_pred eEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHCCCchH
Confidence 9999999999986 999999864210 11111 12234445555555433
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI 1136 (1192)
......+||||||||++||||++.+|++++|||||++||+++.+.+.+.|+++.+++|+|++||+++.+
T Consensus 127 -----------~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~ 195 (301)
T TIGR03522 127 -----------QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEV 195 (301)
T ss_pred -----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 234456899999999999999999999999999999999999999999999988889999999999988
Q ss_pred Hh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1137 IH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1137 ~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.. ||+|++|++|++++.|+.+++.++
T Consensus 196 ~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 196 EAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 65 999999999999999999999764
No 226
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-39 Score=364.59 Aligned_cols=226 Identities=23% Similarity=0.359 Sum_probs=181.8
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCeecCCCC
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD----VESGDIFIDNQNIKTVS 972 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd----p~sGsI~IDG~DI~~i~ 972 (1192)
++|+++.|+.+ ..+++|+| |++.+|+. +||||+||||||||+++|+|+++ |++|+|.+||+|+.+++
T Consensus 6 v~~l~~~~~~~~~~~~~l~~vs---l~i~~Ge~---~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~ 79 (326)
T PRK11022 6 VDKLSVHFGDESAPFRAVDRIS---YSVKQGEV---VGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS 79 (326)
T ss_pred EeCeEEEECCCCccEEEEeeeE---EEECCCCE---EEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC
Confidence 88999999653 35899999 99999999 99999999999999999999998 48999999999999998
Q ss_pred hHhhcc----cEEEEcCCCc--ccc-ccHHHHHhccc---cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHH
Q psy13234 973 QASLRQ----AIGVVPQDTV--LFN-NSIKFNIQYAR---INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042 (1192)
Q Consensus 973 ~~sLR~----~Ig~VPQDp~--LFn-GTIreNI~~G~---~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sde 1042 (1192)
.+.+++ .|+||||||. |++ -|+.+|+...- ...+.+ ..++
T Consensus 80 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~------------------------------~~~~ 129 (326)
T PRK11022 80 EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKK------------------------------TRRQ 129 (326)
T ss_pred HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHH------------------------------HHHH
Confidence 776543 7999999995 333 35666553210 000111 1234
Q ss_pred HHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q psy13234 1043 EVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122 (1192)
Q Consensus 1043 eI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~ 1122 (1192)
++.++|+..++.+... ........||||||||++||||++.+|++||+|||||+||..+.+.|.+.|+++.+
T Consensus 130 ~~~~~L~~~gL~~~~~--------~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 130 RAIDLLNQVGIPDPAS--------RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201 (326)
T ss_pred HHHHHHHHCCCCChHH--------HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5566778887754211 12345668999999999999999999999999999999999999999999998754
Q ss_pred --CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHH
Q psy13234 1123 --SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERN-GVYASM 1169 (1192)
Q Consensus 1123 --grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L 1169 (1192)
+.|+|+|||+++.+. .||+|+||++|+|+|.|+++++.++. ..|.+.
T Consensus 202 ~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 202 KENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCChHHHH
Confidence 789999999999984 69999999999999999999998653 456543
No 227
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=359.95 Aligned_cols=237 Identities=28% Similarity=0.468 Sum_probs=189.3
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecC
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIK 969 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-----p~sGsI~IDG~DI~ 969 (1192)
.+. ++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|+|+++ |++|+|.+||.++.
T Consensus 45 ~l~--i~nl~~~~~~-~~iL~~is---~~i~~Ge~---~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 45 KLS--VEDLDVYYGD-DHALKGVS---MDIPEKSV---TALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred eEE--EEEEEEEeCC-eeeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 355 8999999965 56899999 99999888 99999999999999999999986 68999999999987
Q ss_pred C--CChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 970 T--VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 970 ~--i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
. .+...+|+.|+|+||++.+|++|++||+.++...... . ... + .....+.+ .....++++.++
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~--~-~~~----~----~~~~~~~~----~~~~~~~~~~~~ 180 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGD--I-NTG----L----LARLLGRD----DKDAEDELVERS 180 (305)
T ss_pred cccccHHHHhhceEEEccCCccccccHHHHHHhHHhhccc--c-ccc----c----cccccccC----chHHHHHHHHHH
Confidence 5 3456788999999999999999999999876321000 0 000 0 00000000 001224556777
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEE
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 1127 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvI 1127 (1192)
++..++.+ ++++.......+||||||||++|||||+++|+||||||||++||..+.+.+.+.|+++.+++|+|
T Consensus 181 l~~~~l~~-------~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tii 253 (305)
T PRK14264 181 LRQAALWD-------EVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVV 253 (305)
T ss_pred HHHcCCch-------hhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEE
Confidence 77776643 34455667778999999999999999999999999999999999999999999999988889999
Q ss_pred EEecChhHHHh-cCEE-EEEeCCEEEEEcCHHHHHhc
Q psy13234 1128 IVAHRLSTIIH-ADEI-LVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1128 vIAHRLSTI~~-aDrI-lVLe~G~IvE~GtheELL~~ 1162 (1192)
+|||+++.+.. ||+| ++|++|++++.|+++++.+.
T Consensus 254 ivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 254 VVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred EEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHhC
Confidence 99999999764 9997 57899999999999998754
No 228
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.7e-38 Score=367.76 Aligned_cols=219 Identities=25% Similarity=0.350 Sum_probs=179.9
Q ss_pred ceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCe----ecCCCChHhhc-
Q psy13234 903 DQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ----NIKTVSQASLR- 977 (1192)
Q Consensus 903 VsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~----DI~~i~~~sLR- 977 (1192)
+...|. ....++++| |.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||. |+.+.+.+++|
T Consensus 30 ~~~~~g-~~~~l~~vs---f~i~~Gei---~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~ 102 (382)
T TIGR03415 30 ILDETG-LVVGVANAS---LDIEEGEI---CVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRR 102 (382)
T ss_pred HHHhhC-CEEEEEeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHH
Confidence 334443 345678888 99999888 9999999999999999999999999999999996 67777665553
Q ss_pred ---ccEEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 978 ---QAIGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 978 ---~~Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
++|+||||++.+|+ .|++||+.|+.. ..++++ .++++.++++..
T Consensus 103 ~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~------------------------------~~~~a~e~le~v 152 (382)
T TIGR03415 103 LRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAE------------------------------RRKRVDEQLELV 152 (382)
T ss_pred HhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHHHc
Confidence 68999999999998 799999998732 111111 123455667888
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEE
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV 1129 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvI 1129 (1192)
++.+...+.| .+||||||||++|||||+.+|+|||||||||+||+.+.+.+++.|.++.+ ++|+|+|
T Consensus 153 gL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~i 221 (382)
T TIGR03415 153 GLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFV 221 (382)
T ss_pred CCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 8766543332 36999999999999999999999999999999999999999999988754 7999999
Q ss_pred ecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHH
Q psy13234 1130 AHRLSTI-IHADEILVMHAGEIVERGRHEELLER-NGVYASM 1169 (1192)
Q Consensus 1130 AHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L 1169 (1192)
||+++.+ +.||+|++|++|++++.|+++|++.+ .+.|.+.
T Consensus 222 THdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~ 263 (382)
T TIGR03415 222 SHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVAD 263 (382)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHH
Confidence 9999986 56999999999999999999999865 3445433
No 229
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.8e-38 Score=351.91 Aligned_cols=225 Identities=21% Similarity=0.338 Sum_probs=184.9
Q ss_pred cccceeeecC--------CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 900 MEEDQFGFRK--------GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 900 fenVsFsY~~--------~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
++|+++.|+. ++++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~ 79 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVS---LSLKSGET---VALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL 79 (268)
T ss_pred EeceEEEecCCccccccCceeeEecee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc
Confidence 8899999974 467899999 99999998 999999999999999999999999999999999999887
Q ss_pred Ch---HhhcccEEEEcCCCc--cc-cccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHH
Q psy13234 972 SQ---ASLRQAIGVVPQDTV--LF-NNSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042 (1192)
Q Consensus 972 ~~---~sLR~~Ig~VPQDp~--LF-nGTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sde 1042 (1192)
+. ..+|+.|+|+||++. ++ +.|+++|+.+... +.+.+ ..++
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~------------------------------~~~~ 129 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA------------------------------ERLA 129 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH------------------------------HHHH
Confidence 65 357889999999983 43 4799999865310 00000 0112
Q ss_pred HHHHHHHHcChHHHHhcCCCCCcc-cccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q psy13234 1043 EVKEAATSADIHERILSFPDGYDT-QVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC 1121 (1192)
Q Consensus 1043 eI~~AL~~A~Lhd~I~~LP~GyDT-~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~ 1121 (1192)
++.++++.. |+++ ........||||||||++||||++.+|++|||||||++||.++.+.+.+.|++..
T Consensus 130 ~~~~~l~~~-----------gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~ 198 (268)
T PRK10419 130 RASEMLRAV-----------DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQ 198 (268)
T ss_pred HHHHHHHHc-----------CCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 333344443 3432 3345567899999999999999999999999999999999999999999999875
Q ss_pred C--CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1122 A--SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1122 ~--grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
+ ++|+|+|||+++.+. .||+|++|++|++++.|+++|+.+.++.|..-+.
T Consensus 199 ~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 251 (268)
T PRK10419 199 QQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVLQ 251 (268)
T ss_pred HHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccCCCCHHHHHHH
Confidence 4 789999999999997 5999999999999999999999877776765554
No 230
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.5e-38 Score=341.87 Aligned_cols=204 Identities=30% Similarity=0.453 Sum_probs=174.6
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH--
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA-- 974 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~-- 974 (1192)
++|+++.|+.+ +.+++++| +++.+|+. +||+|+||||||||+++|.|+++|++|+|.+||+++.+.+..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs---~~i~~G~~---~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDIN---LEINPGEI---VILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHH
Confidence 78899998642 56899999 99999988 999999999999999999999999999999999999877643
Q ss_pred -hhcccEEEEcCCCcccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 975 -SLRQAIGVVPQDTVLFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 975 -sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
..|+.|+|+||++.+|. .|+.||+.++.. ..+.++. ++++.++++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~------------------------------~~~~~~~l~ 127 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA------------------------------RERARAMLE 127 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHH------------------------------HHHHHHHHH
Confidence 57899999999999998 699999987531 1111111 234455667
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTI 1127 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvI 1127 (1192)
..++.+.+.+.| .+||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+ ++|+|
T Consensus 128 ~~~l~~~~~~~~-----------~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 196 (220)
T TIGR02982 128 AVGLGDHLDYYP-----------HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTIL 196 (220)
T ss_pred HcCChhhhhcCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 777776665544 47999999999999999999999999999999999999999999988764 79999
Q ss_pred EEecChhHHHhcCEEEEEeCCEE
Q psy13234 1128 IVAHRLSTIIHADEILVMHAGEI 1150 (1192)
Q Consensus 1128 vIAHRLSTI~~aDrIlVLe~G~I 1150 (1192)
+|||+++....||+|++|++|++
T Consensus 197 ~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 197 IVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred EEeCCHHHHhhCCEEEEEECCEE
Confidence 99999998888999999999986
No 231
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.6e-38 Score=347.53 Aligned_cols=227 Identities=22% Similarity=0.325 Sum_probs=182.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC----CCceEEECCeecCCCChHh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV----ESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp----~sGsI~IDG~DI~~i~~~s 975 (1192)
++|++++| ++++++++| +.+.+|+. ++|+|+||||||||+++|+|+++| ++|+|.+||++++.. +.
T Consensus 7 ~~~l~~~~--~~~il~~vs---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~ 76 (254)
T PRK10418 7 LRNIALQA--AQPLVHGVS---LTLQRGRV---LALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--AL 76 (254)
T ss_pred EeCeEEEe--ccceecceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cc
Confidence 89999999 457899999 99999999 999999999999999999999999 999999999998632 22
Q ss_pred hcccEEEEcCCCc-ccc--ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 976 LRQAIGVVPQDTV-LFN--NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 976 LR~~Ig~VPQDp~-LFn--GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
.++.|+||||++. .|+ .|+.+|+.+..... +. ..+++++.++++..+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~-------~~~~~~~~~~l~~~~ 126 (254)
T PRK10418 77 RGRKIATIMQNPRSAFNPLHTMHTHARETCLAL-----------------------GK-------PADDATLTAALEAVG 126 (254)
T ss_pred ccceEEEEecCCccccCccccHHHHHHHHHHHc-----------------------CC-------ChHHHHHHHHHHHcC
Confidence 3468999999985 454 58888875321000 00 012344556667777
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 1130 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIA 1130 (1192)
+.+. ++.++.....||||||||++||||++++|++||||||||+||.++.+.+.+.|++..+ ++|+|+||
T Consensus 127 l~~~--------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~s 198 (254)
T PRK10418 127 LENA--------ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT 198 (254)
T ss_pred CCCh--------hhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 6432 2234555678999999999999999999999999999999999999999999998754 68999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC-c-HHHHHHHHhh
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLERN-G-VYASMWIQQN 1174 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~-G-~Ya~L~~~Q~ 1174 (1192)
|+++.+. .||+|++|++|++++.|+.+++.+.. . ..+.+|..+.
T Consensus 199 H~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 199 HDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSAHL 245 (254)
T ss_pred cCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCCCCHHHHHHHHhhh
Confidence 9999986 59999999999999999999998653 2 3455665554
No 232
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-38 Score=351.12 Aligned_cols=223 Identities=28% Similarity=0.416 Sum_probs=185.2
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecC
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIK 969 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~ 969 (1192)
.++ ++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++| ++|+|.+||+++.
T Consensus 20 ~l~--~~nl~~~~~~-~~~l~~vs---~~i~~Ge~---~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 20 VFE--VEGVKVFYGG-FLALVDVH---LKIPAKKI---IAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred eEE--EeeEEEEeCC-eEEEeeee---eEEcCCCE---EEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 455 8999999964 46899999 99999888 999999999999999999999864 6899999999986
Q ss_pred C--CChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 970 T--VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 970 ~--i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
+ .+...+|+.|+|+||++.+|+.|++|||.++..... +. ...++++.++
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~-----------------------~~------~~~~~~~~~~ 141 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANG-----------------------YK------GNLDELVEDS 141 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcC-----------------------ch------HHHHHHHHHH
Confidence 4 345577899999999999999999999987531100 00 0012334555
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEE
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 1127 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvI 1127 (1192)
++.+++.+.+.. ........||||||||++||||++++|++|||||||++||.++.+.+.+.|++..+++|+|
T Consensus 142 l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tii 214 (274)
T PRK14265 142 LRRAAIWEEVKD-------KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTII 214 (274)
T ss_pred HHHcccchhhHH-------HhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEE
Confidence 677777554431 2234556899999999999999999999999999999999999999999999988789999
Q ss_pred EEecChhHHH-hcCEEEEEe---------CCEEEEEcCHHHHHhc
Q psy13234 1128 IVAHRLSTII-HADEILVMH---------AGEIVERGRHEELLER 1162 (1192)
Q Consensus 1128 vIAHRLSTI~-~aDrIlVLe---------~G~IvE~GtheELL~~ 1162 (1192)
+|||+++.+. .||+|++|+ +|++++.|+.+|+.+.
T Consensus 215 i~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~ 259 (274)
T PRK14265 215 MVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence 9999999885 699999998 8999999999999754
No 233
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.2e-38 Score=364.63 Aligned_cols=212 Identities=27% Similarity=0.392 Sum_probs=175.7
Q ss_pred cceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC----hHhhc
Q psy13234 902 EDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS----QASLR 977 (1192)
Q Consensus 902 nVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~----~~sLR 977 (1192)
|++++|.. +. + ++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ....|
T Consensus 4 ~l~~~~~~-~~-~-~is---l~i~~Gei---~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DAD---FTLPGQGV---TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECC-EE-E-EEE---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhh
Confidence 56677753 22 3 777 99998888 9999999999999999999999999999999999987543 34578
Q ss_pred ccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 978 QAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
+.|+||||++.+|+. |++||+.++....+.++ .++++.++++..++.+.
T Consensus 75 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~------------------------------~~~~~~~~l~~~gL~~~ 124 (354)
T TIGR02142 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSE------------------------------RRISFERVIELLGIGHL 124 (354)
T ss_pred CCeEEEecCCccCCCCcHHHHHHHHhhccChhH------------------------------HHHHHHHHHHHcCChhH
Confidence 899999999999975 99999998642211111 12334555666666554
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+ ....||||||||++||||++++|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++
T Consensus 125 ~~~-----------~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 125 LGR-----------LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred hcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 433 3357999999999999999999999999999999999999999999998754 689999999999
Q ss_pred HHHh-cCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1135 TIIH-ADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1135 TI~~-aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
.+.. ||+|++|++|++++.|+++++..+.
T Consensus 194 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 194 EVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred HHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 8864 9999999999999999999998653
No 234
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.4e-38 Score=343.40 Aligned_cols=210 Identities=26% Similarity=0.395 Sum_probs=168.4
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCeecCCCCh
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD---VESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd---p~sGsI~IDG~DI~~i~~ 973 (1192)
++|+++.|+.. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++ |++|+|.+||+++. .
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vs---l~i~~Ge~---~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~ 76 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVS---LHVESGQV---MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---P 76 (226)
T ss_pred eecceeeeecCccccccccCce---EEEcCCeE---EEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---h
Confidence 89999999764 68899999 99999998 99999999999999999999999 99999999999875 3
Q ss_pred HhhcccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHH-HHHHc
Q psy13234 974 ASLRQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE-AATSA 1051 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~-AL~~A 1051 (1192)
...|++|+|+||++.+|++ |++||+.++......+...++. .++++.+ .++..
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~l~~~ 131 (226)
T cd03234 77 DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAI-------------------------RKKRVEDVLLRDL 131 (226)
T ss_pred HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHH-------------------------HHHHHHHHHHHhh
Confidence 5788999999999999997 9999998753110000000000 0011111 22333
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEe
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVA 1130 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIA 1130 (1192)
++. .........||||||||++||||++++|+++|||||||+||+.+.+.+.+.|++.. +++|+|++|
T Consensus 132 ~l~-----------~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~s 200 (226)
T cd03234 132 ALT-----------RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTI 200 (226)
T ss_pred cch-----------hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 322 22233456899999999999999999999999999999999999999999998875 468999999
Q ss_pred cCh--hHHHhcCEEEEEeCCEEEEEc
Q psy13234 1131 HRL--STIIHADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1131 HRL--STI~~aDrIlVLe~G~IvE~G 1154 (1192)
|++ .....||+|++|++|++++.|
T Consensus 201 h~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 201 HQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred cCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 998 355679999999999999876
No 235
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=358.60 Aligned_cols=235 Identities=22% Similarity=0.296 Sum_probs=183.9
Q ss_pred cccceeeecC---CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCeecCCCC
Q psy13234 900 MEEDQFGFRK---GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD----VESGDIFIDNQNIKTVS 972 (1192)
Q Consensus 900 fenVsFsY~~---~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd----p~sGsI~IDG~DI~~i~ 972 (1192)
++|++++|+. ...+++++| +.+.+|+. +||+|+||||||||+++|.|+.+ |++|+|.+||+|+.+++
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vs---l~i~~Ge~---~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~ 79 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVS---MTLTEGEI---RGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeE---EEECCCCE---EEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC
Confidence 8899999953 245889999 99999888 99999999999999999999986 68999999999999888
Q ss_pred hHhhc----ccEEEEcCCCcc--cc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHH
Q psy13234 973 QASLR----QAIGVVPQDTVL--FN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 973 ~~sLR----~~Ig~VPQDp~L--Fn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
.++++ +.|+||||+|.. +. .||.+|+........ ..+.. ....+..++++.
T Consensus 80 ~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~--------------------~~~~~--~~~~~~~~~~~~ 137 (330)
T PRK15093 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWT--------------------YKGRW--WQRFGWRKRRAI 137 (330)
T ss_pred HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhh--------------------ccccc--cccHHHHHHHHH
Confidence 76653 579999999973 32 589999863210000 00000 000001134566
Q ss_pred HHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--C
Q psy13234 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--S 1123 (1192)
Q Consensus 1046 ~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--g 1123 (1192)
++|+..++.+.-. ........||||||||++|||||+.+|+|||||||||+||..+.+.|.+.|+++.+ +
T Consensus 138 ~~L~~~gL~~~~~--------~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g 209 (330)
T PRK15093 138 ELLHRVGIKDHKD--------AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNN 209 (330)
T ss_pred HHHHHCCCCChHH--------HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 7778888864211 01223358999999999999999999999999999999999999999999998764 6
Q ss_pred ceEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHHH
Q psy13234 1124 RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER-NGVYASMW 1170 (1192)
Q Consensus 1124 rTvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L~ 1170 (1192)
.|+|+|||+++.+.. ||+|+||++|+|+|.|+.+++.+. ...|.+.+
T Consensus 210 ~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 210 TTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred CEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHH
Confidence 899999999999964 999999999999999999999865 35676533
No 236
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-38 Score=349.75 Aligned_cols=221 Identities=24% Similarity=0.357 Sum_probs=183.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC--------CceEEECCeecCCC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE--------SGDIFIDNQNIKTV 971 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~--------sGsI~IDG~DI~~i 971 (1192)
++|++++|.. +++++++| +.+.+|+. +||+||||||||||+++|.|+++|+ +|+|.+||.++...
T Consensus 4 ~~nl~~~~~~-~~il~~vs---l~i~~Ge~---~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 4 ADHLHVARRH-RAILRDLS---LRIEPGRV---TALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred EEEEEEEECC-EeEEecce---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 7889999854 56899999 99999988 9999999999999999999999998 99999999999988
Q ss_pred ChHhhcccEEEEcCCCc-cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 972 SQASLRQAIGVVPQDTV-LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp~-LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
+...+++.++|+||++. +|+.|++||+.++...... . . ..+. ..++++++++++.
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~----~-~-------------~~~~------~~~~~~~~~~l~~ 132 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHAR----R-A-------------GALT------HRDGEIAWQALAL 132 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhccccccc----c-c-------------ccCC------HHHHHHHHHHHHH
Confidence 88888999999999986 6789999999875310000 0 0 0000 0123345566666
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLL---------KAPQIVLLDEATSALDTKTERNIQSALNRVC 1121 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALL---------rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~ 1121 (1192)
.++.+ .++.....||||||||++||||++ .+|++|||||||++||+++.+.+.+.|++..
T Consensus 133 ~~l~~-----------~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 201 (272)
T PRK13547 133 AGATA-----------LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLA 201 (272)
T ss_pred cCcHh-----------hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 66643 334455689999999999999999 5999999999999999999999999999875
Q ss_pred C--CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1122 A--SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1122 ~--grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++..
T Consensus 202 ~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 202 RDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTP 245 (272)
T ss_pred HhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcCH
Confidence 4 689999999999986 6999999999999999999998763
No 237
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-38 Score=335.71 Aligned_cols=202 Identities=28% Similarity=0.363 Sum_probs=166.4
Q ss_pred cceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC----ChHhhc
Q psy13234 902 EDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----SQASLR 977 (1192)
Q Consensus 902 nVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i----~~~sLR 977 (1192)
+++++|+.. .+ ++| +.+.+ +. ++|+||||||||||+++|+|+++|++|+|.+||.++... +....|
T Consensus 5 ~l~~~~~~~-~~--~vs---l~i~~-e~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 5 DIEKRLPDF-TL--KID---FDLNE-EV---TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeEecCCe-ee--Cce---EEEcc-ee---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 677888653 23 888 99999 88 999999999999999999999999999999999998643 234578
Q ss_pred ccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 978 QAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
+.++|+||++.+|. .|++||+.++....+++ ..++++.+.++..++.+.
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~------------------------------~~~~~~~~~l~~~~l~~~ 124 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNR------------------------------EDRISVDELLDLLGLDHL 124 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHH------------------------------HHHHHHHHHHHHcCCHhH
Confidence 89999999999996 59999998753211110 112344555566655433
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
.......||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|+|||+++
T Consensus 125 -----------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 125 -----------LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred -----------hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 3344568999999999999999999999999999999999999999999988754 789999999999
Q ss_pred HHH-hcCEEEEEeCCEEEEEc
Q psy13234 1135 TII-HADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~IvE~G 1154 (1192)
.+. .||+|++|++|++++.|
T Consensus 194 ~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 194 EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHhcCEEEEEECCEEEecC
Confidence 885 59999999999999876
No 238
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.8e-38 Score=327.34 Aligned_cols=169 Identities=36% Similarity=0.567 Sum_probs=157.9
Q ss_pred cccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|++++|+. +++++++++ +.+.+|+. ++|+||+|||||||+++|.|+++|++|+|.+||.++.+.+.+.+|+
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~---~~i~~Ge~---~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVS---FSIEPGES---LAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred EEEEEEEcCCCCCcceeeeE---EEECCCCE---EEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 7889999975 346899998 99999998 9999999999999999999999999999999999999999889999
Q ss_pred cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
+++|++|++.+|++|++||+
T Consensus 77 ~i~~~~q~~~~~~~tv~~~l------------------------------------------------------------ 96 (173)
T cd03246 77 HVGYLPQDDELFSGSIAENI------------------------------------------------------------ 96 (173)
T ss_pred heEEECCCCccccCcHHHHC------------------------------------------------------------
Confidence 99999999999999988761
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~ 1137 (1192)
||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.
T Consensus 97 ----------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 97 ----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred ----------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999988754 789999999999999
Q ss_pred hcCEEEEEeCCEE
Q psy13234 1138 HADEILVMHAGEI 1150 (1192)
Q Consensus 1138 ~aDrIlVLe~G~I 1150 (1192)
.||+|++|++|++
T Consensus 161 ~~d~v~~l~~G~i 173 (173)
T cd03246 161 SADRILVLEDGRV 173 (173)
T ss_pred hCCEEEEEECCCC
Confidence 9999999999974
No 239
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=9.7e-38 Score=357.42 Aligned_cols=216 Identities=26% Similarity=0.403 Sum_probs=181.6
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s 975 (1192)
++ ++|++++|+. +.+++++| |.+.+|+. +||+||+|||||||+++|+|+++|++|+|.+||+|+.+.+ ..
T Consensus 42 i~--i~nl~k~y~~-~~~l~~is---~~i~~Gei---~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~ 111 (340)
T PRK13536 42 ID--LAGVSKSYGD-KAVVNGLS---FTVASGEC---FGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RL 111 (340)
T ss_pred EE--EEEEEEEECC-EEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HH
Confidence 55 8999999964 46899999 99999998 9999999999999999999999999999999999998754 56
Q ss_pred hcccEEEEcCCCccc-cccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 976 LRQAIGVVPQDTVLF-NNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 976 LR~~Ig~VPQDp~LF-nGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
.|+.|||+||++.+| +.|++||+.+... ..+.++. .+++.++++..+
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~ll~~~~ 161 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREI------------------------------EAVIPSLLEFAR 161 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHH------------------------------HHHHHHHHHHcC
Confidence 889999999999987 5699999985321 1111111 122233344444
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEec
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAH 1131 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAH 1131 (1192)
+++..++.++ +||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||
T Consensus 162 -------L~~~~~~~~~----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH 230 (340)
T PRK13536 162 -------LESKADARVS----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230 (340)
T ss_pred -------CchhhCCChh----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4455666664 699999999999999999999999999999999999999999998875 4799999999
Q ss_pred ChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1132 RLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1132 RLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+++.+. -||+|++|++|++++.|+.+++.+.
T Consensus 231 ~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 231 FMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999986 4999999999999999999999754
No 240
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.1e-37 Score=335.57 Aligned_cols=205 Identities=22% Similarity=0.339 Sum_probs=172.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++.... ++.
T Consensus 3 l~~v~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~ 71 (223)
T TIGR03740 3 TKNLSKRFGK-QTAVNNIS---LTVPKNSV---YGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHK 71 (223)
T ss_pred EEeEEEEECC-EEEEeeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----ccc
Confidence 7889999864 56899999 99999888 9999999999999999999999999999999999876422 357
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|+||++.+|. .|++||+.++.... ..+++++.++++..++.+...
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~ 119 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLL--------------------------------GLPDSRIDEVLNIVDLTNTGK 119 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHc--------------------------------CCCHHHHHHHHHHcCCcHHHh
Confidence 999999999887 69999998642100 011234445557777765432
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~ 1137 (1192)
+ ....||||||||++||||++++|++++|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.
T Consensus 120 ~-----------~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 120 K-----------KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred h-----------hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 2 235799999999999999999999999999999999999999999998875 4689999999999885
Q ss_pred -hcCEEEEEeCCEEEEEcCHHH
Q psy13234 1138 -HADEILVMHAGEIVERGRHEE 1158 (1192)
Q Consensus 1138 -~aDrIlVLe~G~IvE~GtheE 1158 (1192)
.||+|++|++|++++.|+.++
T Consensus 189 ~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 189 QLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HhcCEEEEEeCCEEEEecChhh
Confidence 699999999999999998765
No 241
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-38 Score=344.02 Aligned_cols=204 Identities=25% Similarity=0.401 Sum_probs=170.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+++.|+. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||+++... ++.
T Consensus 4 ~~~l~~~~~~-~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~ 71 (255)
T PRK11248 4 ISHLYADYGG-KPALEDIN---LTLESGEL---LVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAE 71 (255)
T ss_pred EEEEEEEeCC-eeeEeeee---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCc
Confidence 7889999964 56899999 99999998 999999999999999999999999999999999998653 346
Q ss_pred EEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+|+ .|++||+.++.. ..+.+ ..++++.++++..++.+.
T Consensus 72 ~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~gl~~~ 121 (255)
T PRK11248 72 RGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM------------------------------QRLEIAHQMLKKVGLEGA 121 (255)
T ss_pred EEEEeCCCccCCCCcHHHHHHhHHHHcCCCHH------------------------------HHHHHHHHHHHHcCChhH
Confidence 999999999997 699999986521 01111 012345566677776554
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLS 1134 (1192)
.. ....+||||||||++||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++
T Consensus 122 ~~-----------~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 122 EK-----------RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred hh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 33 2345799999999999999999999999999999999999999999999873 3799999999999
Q ss_pred HHH-hcCEEEEEe--CCEEEEEcCH
Q psy13234 1135 TII-HADEILVMH--AGEIVERGRH 1156 (1192)
Q Consensus 1135 TI~-~aDrIlVLe--~G~IvE~Gth 1156 (1192)
.+. .||+|++|+ +|++++.++.
T Consensus 191 ~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 191 EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 875 599999999 5999998764
No 242
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.7e-37 Score=334.99 Aligned_cols=194 Identities=29% Similarity=0.412 Sum_probs=160.1
Q ss_pred ccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcccc-cc
Q psy13234 915 DAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN-NS 993 (1192)
Q Consensus 915 ~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFn-GT 993 (1192)
+++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++.+.+. ..+|+||++.+|. .|
T Consensus 2 ~~is---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~t 70 (230)
T TIGR01184 2 KGVN---LTIQQGEF---ISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLT 70 (230)
T ss_pred Ccee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCC
Confidence 4666 88888888 99999999999999999999999999999999999877543 2489999999998 59
Q ss_pred HHHHHhccc----cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCccccc
Q psy13234 994 IKFNIQYAR----INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVG 1069 (1192)
Q Consensus 994 IreNI~~G~----~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VG 1069 (1192)
++||+.++. +..++++ .++++.++++..++.+... +
T Consensus 71 v~e~l~~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~~~~~-------~--- 110 (230)
T TIGR01184 71 VRENIALAVDRVLPDLSKSE------------------------------RRAIVEEHIALVGLTEAAD-------K--- 110 (230)
T ss_pred HHHHHHHHHHhcccCCCHHH------------------------------HHHHHHHHHHHcCCHHHHc-------C---
Confidence 999998642 1111111 1233455567666654332 2
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHH-hcCEEEEEe
Q psy13234 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTII-HADEILVMH 1146 (1192)
Q Consensus 1070 ErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~-~aDrIlVLe 1146 (1192)
....||||||||++||||++++|+++||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|+
T Consensus 111 -~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~ 189 (230)
T TIGR01184 111 -RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLT 189 (230)
T ss_pred -ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 2357999999999999999999999999999999999999999999988753 689999999999875 599999999
Q ss_pred CCEEEEEcCHHHHH
Q psy13234 1147 AGEIVERGRHEELL 1160 (1192)
Q Consensus 1147 ~G~IvE~GtheELL 1160 (1192)
+|++++.|+..+++
T Consensus 190 ~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 190 NGPAANIGQILEVP 203 (230)
T ss_pred CCcEecccCceecc
Confidence 99999999876653
No 243
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=344.32 Aligned_cols=225 Identities=24% Similarity=0.360 Sum_probs=177.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.++++++++| +.+.+|+. +||+||||||||||+++|+|+++|++|+|.+||.++.. ...++.
T Consensus 9 ~~~l~~~~~~~~~il~~vs---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~ 79 (272)
T PRK15056 9 VNDVTVTWRNGHTALRDAS---FTVPGGSI---AALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNL 79 (272)
T ss_pred EEeEEEEecCCcEEEEeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccce
Confidence 8899999975567899999 99999988 99999999999999999999999999999999998752 222346
Q ss_pred EEEEcCCCcc---ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVL---FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~L---FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+ +..++++|+.++....- .. +..+ ....++++.++++..++.+.
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~---------------~~~~-------~~~~~~~~~~~l~~~gl~~~ 135 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHM--GW---------------LRRA-------KKRDRQIVTAALARVDMVEF 135 (272)
T ss_pred EEEeccccccccCCCcchhhheeccccccc--cc---------------ccCC-------CHHHHHHHHHHHHHcCChhH
Confidence 9999999875 55689999875421000 00 0000 00123445566788887655
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLST 1135 (1192)
. |+.+ ..||||||||++||||++++|+|+||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.
T Consensus 136 ~-------~~~~----~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~ 204 (272)
T PRK15056 136 R-------HRQI----GELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204 (272)
T ss_pred h-------cCCc----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 3 3333 36999999999999999999999999999999999999999999998754 7899999999988
Q ss_pred H-HhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1136 I-IHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1136 I-~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
+ ..||+++++ +|++++.|+++++... ....+.+
T Consensus 205 ~~~~~d~v~~~-~G~i~~~g~~~~~~~~-~~~~~~~ 238 (272)
T PRK15056 205 VTEFCDYTVMV-KGTVLASGPTETTFTA-ENLELAF 238 (272)
T ss_pred HHHhCCEEEEE-CCEEEeecCHHhccCH-HHHHHHh
Confidence 7 569999777 8999999999998643 2344444
No 244
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.7e-37 Score=329.39 Aligned_cols=198 Identities=26% Similarity=0.428 Sum_probs=164.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh----Hh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----AS 975 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~----~s 975 (1192)
++|+++.|+. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+||.++..++. +.
T Consensus 1 i~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLN---LTIEKGKM---YAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECC-EEEEeceE---EEEeCCcE---EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHH
Confidence 3678888864 56899999 99999988 99999999999999999999999999999999999775542 34
Q ss_pred hcccEEEEcCCCcccc-ccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 976 LRQAIGVVPQDTVLFN-NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 976 LR~~Ig~VPQDp~LFn-GTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
.|+.++|++|++.+|+ .|++||+.++... .+.+ ..++++.++++..+
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~ 123 (206)
T TIGR03608 74 RREKLGYLFQNFALIENETVEENLDLGLKYKKLSKK------------------------------EKREKKKEALEKVG 123 (206)
T ss_pred HHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHH------------------------------HHHHHHHHHHHHcC
Confidence 6789999999999997 6999999875311 0110 12344556667777
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEec
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH 1131 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAH 1131 (1192)
+.+... . ...+||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||
T Consensus 124 l~~~~~-------~----~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 192 (206)
T TIGR03608 124 LNLKLK-------Q----KIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTH 192 (206)
T ss_pred chhhhc-------C----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 754432 2 2357999999999999999999999999999999999999999999998754 699999999
Q ss_pred ChhHHHhcCEEEEE
Q psy13234 1132 RLSTIIHADEILVM 1145 (1192)
Q Consensus 1132 RLSTI~~aDrIlVL 1145 (1192)
++..+..||+|++|
T Consensus 193 ~~~~~~~~d~i~~l 206 (206)
T TIGR03608 193 DPEVAKQADRVIEL 206 (206)
T ss_pred CHHHHhhcCEEEeC
Confidence 99988899999875
No 245
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.3e-37 Score=337.66 Aligned_cols=223 Identities=22% Similarity=0.295 Sum_probs=170.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCeecCCCChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl--ydp~sGsI~IDG~DI~~i~~~sLR 977 (1192)
++|+++.|+. +++++++| +.+.+|+. +||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+....+
T Consensus 4 ~~nl~~~~~~-~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (248)
T PRK09580 4 IKDLHVSVED-KAILRGLN---LEVRPGEV---HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRA 76 (248)
T ss_pred EEEEEEEeCC-eeeeecce---eEEcCCCE---EEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHh
Confidence 7899999974 56899999 99999888 999999999999999999999 479999999999999888876654
Q ss_pred -ccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 978 -QAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 978 -~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
+.++|+||++.+++. |..+|+.+.... +.... ..+..+. ..-++.+.+.++..+
T Consensus 77 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~~-----~~~~~~~~~~l~~~~--- 132 (248)
T PRK09580 77 GEGIFMAFQYPVEIPGVSNQFFLQTALNA-----VRSYR-----------GQEPLDR-----FDFQDLMEEKIALLK--- 132 (248)
T ss_pred hcceEEEecCchhccchhHHHHHHHhhhh-----hhccc-----------ccccchH-----HHHHHHHHHHHHHcC---
Confidence 579999999988765 444444321000 00000 0000000 000122233333333
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 1134 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLS 1134 (1192)
+|+++.+... ...||||||||++||||++++|+|||||||||+||.++.+.+.+.|+++.+ ++|+|+|||+++
T Consensus 133 ----l~~~~~~~~~--~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 133 ----MPEDLLTRSV--NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred ----CChhhcccCC--CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4444444322 136999999999999999999999999999999999999999999988754 689999999999
Q ss_pred HHHh--cCEEEEEeCCEEEEEcCHHHH
Q psy13234 1135 TIIH--ADEILVMHAGEIVERGRHEEL 1159 (1192)
Q Consensus 1135 TI~~--aDrIlVLe~G~IvE~GtheEL 1159 (1192)
.+.. +|+|++|++|++++.|++++.
T Consensus 207 ~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 207 ILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9987 899999999999999999854
No 246
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.3e-37 Score=335.90 Aligned_cols=223 Identities=21% Similarity=0.294 Sum_probs=176.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCeecCCCChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl--ydp~sGsI~IDG~DI~~i~~~sLR 977 (1192)
+++++++|+. +++++++| +.+.+|+. +||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.+..+
T Consensus 10 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 10 IKNLHASVNE-NEILKGLN---LSINKGEI---HAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred EEeEEEEeCC-EEeeecce---eEEcCCcE---EEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 8899999964 46899999 99999888 999999999999999999998 689999999999999988876655
Q ss_pred c-cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 978 Q-AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 978 ~-~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
+ .++++||++.+|++ |+.+|+.++... +.. .. ..++ .+ .....+++.++++..++.+
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~---~~~--~~----------~~~~-~~-----~~~~~~~~~~~l~~~~l~~ 141 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNS---KRK--FQ----------GLPE-LD-----PLEFLEIINEKLKLVGMDP 141 (252)
T ss_pred eeeEEEEeccccccccccHHHHHHHhhhh---hhc--cc----------cccc-cc-----HHHHHHHHHHHHHHcCCch
Confidence 4 58999999999985 789998754210 000 00 0000 00 0001234556667766642
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 1134 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLS 1134 (1192)
. -.+..+++ .||||||||++||||++++|+|+||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++
T Consensus 142 ~------~~~~~~~~---~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 142 S------FLSRNVNE---GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred h------hhcccccc---CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 1 12333322 4999999999999999999999999999999999999999999988754 799999999999
Q ss_pred HHHh--cCEEEEEeCCEEEEEcCHHHH
Q psy13234 1135 TIIH--ADEILVMHAGEIVERGRHEEL 1159 (1192)
Q Consensus 1135 TI~~--aDrIlVLe~G~IvE~GtheEL 1159 (1192)
.+.. ||+|++|++|++++.|+++++
T Consensus 213 ~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 213 LLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 9875 899999999999999999843
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-37 Score=329.42 Aligned_cols=186 Identities=23% Similarity=0.315 Sum_probs=159.8
Q ss_pred cccceeeecC---CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCeecCCCCh
Q psy13234 900 MEEDQFGFRK---GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD---VESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 900 fenVsFsY~~---~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd---p~sGsI~IDG~DI~~i~~ 973 (1192)
++|++|.|+. +++++++++ +.+.+|+. +||+||||||||||+++|.|+++ |++|+|.+||+++...+
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~- 78 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFS---GVVKPGEM---VLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA- 78 (202)
T ss_pred EEccEEEeccCCCCceeeeeEE---EEECCCcE---EEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-
Confidence 8999999974 456888998 99999988 99999999999999999999999 89999999999998765
Q ss_pred HhhcccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 974 ASLRQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
...|+.++|+||++.+|.+ |++|||.++. +. .
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~----------------------------------------------~~-~ 111 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFAL----------------------------------------------RC-K 111 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhh----------------------------------------------hh-c
Confidence 4678899999999998875 9999997641 00 0
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 1130 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIA 1130 (1192)
. .+....||||||||++||||++++|++++|||||++||+++.+.+.+.|++..+ ++|+|+++
T Consensus 112 -----------~----~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~ 176 (202)
T cd03233 112 -----------G----NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSL 176 (202)
T ss_pred -----------c----ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 1 223457999999999999999999999999999999999999999999998764 46777765
Q ss_pred cC-hhHH-HhcCEEEEEeCCEEEEEc
Q psy13234 1131 HR-LSTI-IHADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1131 HR-LSTI-~~aDrIlVLe~G~IvE~G 1154 (1192)
|+ ++.+ ..||+|++|++|++++.|
T Consensus 177 ~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 177 YQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred cCCHHHHHHhCCeEEEEECCEEEecC
Confidence 54 5555 679999999999999865
No 248
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4e-37 Score=337.29 Aligned_cols=226 Identities=25% Similarity=0.349 Sum_probs=177.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCee-----cCCCChH
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN-----IKTVSQA 974 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~D-----I~~i~~~ 974 (1192)
++|++++|+. +.+++++| +++.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.+ +...+..
T Consensus 6 ~~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 6 VSGLSKSYGG-GKGCRDVS---FDLYPGEV---LGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78 (253)
T ss_pred EeeeEEEeCC-ceEeecce---EEEeCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHH
Confidence 8899999964 45789999 99999988 99999999999999999999999999999999988 7766654
Q ss_pred h----hcccEEEEcCCCcc---ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 975 S----LRQAIGVVPQDTVL---FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 975 s----LR~~Ig~VPQDp~L---FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
. .++.|+|+||++.+ +..|+.+|+.+...... . ..+ ...++++.+.
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~-------~-------------~~~-------~~~~~~~~~~ 131 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG-------A-------------RHY-------GNIRAAAHDW 131 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc-------c-------------cch-------HHHHHHHHHH
Confidence 3 35689999999852 34588899864210000 0 000 0012233333
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--Cce
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRT 1125 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grT 1125 (1192)
++..++. ++........||||||||++||||++++|++||||||||+||+.+.+.+.+.|++..+ +.|
T Consensus 132 l~~l~l~----------~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 201 (253)
T TIGR02323 132 LEEVEID----------PTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLA 201 (253)
T ss_pred HHHcCCC----------hhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 4444332 1334555678999999999999999999999999999999999999999999988643 799
Q ss_pred EEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHH
Q psy13234 1126 TIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER-NGVYASM 1169 (1192)
Q Consensus 1126 vIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L 1169 (1192)
+|+|||+++.+. .||++++|++|++++.|+++++..+ ...|.++
T Consensus 202 ii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 202 VIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQL 247 (253)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcCCCCHHHHH
Confidence 999999999997 5999999999999999999998754 2345443
No 249
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.3e-37 Score=333.02 Aligned_cols=210 Identities=24% Similarity=0.345 Sum_probs=168.0
Q ss_pred cccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC----CCceEEECCeecCCCChHhhcccEEEEcCCCc-
Q psy13234 914 RDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV----ESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV- 988 (1192)
Q Consensus 914 L~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp----~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~- 988 (1192)
++++| +++.+|+. ++|+||+|||||||+++|+|+++| ++|+|.+||+++... +..+++|+|+||++.
T Consensus 2 l~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~ 73 (230)
T TIGR02770 2 VQDLN---LSLKRGEV---LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRT 73 (230)
T ss_pred cccee---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchh
Confidence 56777 88888888 999999999999999999999999 899999999998764 233468999999995
Q ss_pred ccc--ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcc
Q psy13234 989 LFN--NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDT 1066 (1192)
Q Consensus 989 LFn--GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT 1066 (1192)
.|+ -|+.+|+.+...... .. ....++++.++++..++.+ + ++
T Consensus 74 ~~~~~~t~~~~~~~~~~~~~---------------------~~-------~~~~~~~~~~~l~~~~l~~-------~-~~ 117 (230)
T TIGR02770 74 AFNPLFTMGNHAIETLRSLG---------------------KL-------SKQARALILEALEAVGLPD-------P-EE 117 (230)
T ss_pred hcCcccCHHHHHHHHHHHcC---------------------cc-------HHHHHHHHHHHHHHcCCCc-------h-HH
Confidence 444 589999864311000 00 0012345666677777642 1 12
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHH-hcCEEE
Q psy13234 1067 QVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTII-HADEIL 1143 (1192)
Q Consensus 1067 ~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~-~aDrIl 1143 (1192)
........||||||||++||||++++|+|+|||||||+||.++.+.+.+.|++..+ ++|+|++||+++.+. .||+|+
T Consensus 118 ~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 197 (230)
T TIGR02770 118 VLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVA 197 (230)
T ss_pred HHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 33445668999999999999999999999999999999999999999999998764 689999999999986 599999
Q ss_pred EEeCCEEEEEcCHHHHHhc-CcHHH
Q psy13234 1144 VMHAGEIVERGRHEELLER-NGVYA 1167 (1192)
Q Consensus 1144 VLe~G~IvE~GtheELL~~-~G~Ya 1167 (1192)
+|++|++++.|+++++... .+.|.
T Consensus 198 ~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred EEECCEEEEeCCHHHHHhCcCCHHH
Confidence 9999999999999999864 34444
No 250
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-37 Score=327.07 Aligned_cols=177 Identities=24% Similarity=0.383 Sum_probs=158.4
Q ss_pred cccceeeecC---CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEECCeecCCCChH
Q psy13234 900 MEEDQFGFRK---GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY--DVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 900 fenVsFsY~~---~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRly--dp~sGsI~IDG~DI~~i~~~ 974 (1192)
++|+++.|+. ++++++++| +.+.+|+. ++|+||||||||||+++|.|++ +|++|+|.+||+++. .
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~ 75 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNIS---GYVKPGTL---TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----K 75 (192)
T ss_pred EeeeEEEecCCCCceEeEEccE---EEEeCCcE---EEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----H
Confidence 8899999975 256899999 99999988 9999999999999999999986 489999999999986 5
Q ss_pred hhcccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 975 SLRQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
.+|++++|++|++.+|.+ |++||+.++. .+ +
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~----------~~----------------------------------~---- 107 (192)
T cd03232 76 NFQRSTGYVEQQDVHSPNLTVREALRFSA----------LL----------------------------------R---- 107 (192)
T ss_pred HhhhceEEecccCccccCCcHHHHHHHHH----------HH----------------------------------h----
Confidence 678899999999998885 9999997531 00 1
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHR 1132 (1192)
.||||||||++||||++++|++++|||||++||.++.+.+.+.|++..+ ++|+|+|||+
T Consensus 108 --------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~ 167 (192)
T cd03232 108 --------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQ 167 (192)
T ss_pred --------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999998754 7999999999
Q ss_pred hhH--HHhcCEEEEEeC-CEEEEEc
Q psy13234 1133 LST--IIHADEILVMHA-GEIVERG 1154 (1192)
Q Consensus 1133 LST--I~~aDrIlVLe~-G~IvE~G 1154 (1192)
++. ...||+|++|++ |++++.|
T Consensus 168 ~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 168 PSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred ChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 983 567999999999 9999876
No 251
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.2e-37 Score=326.47 Aligned_cols=178 Identities=32% Similarity=0.483 Sum_probs=159.6
Q ss_pred cccceeeecC-----CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEECCeecCCCC
Q psy13234 900 MEEDQFGFRK-----GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY--DVESGDIFIDNQNIKTVS 972 (1192)
Q Consensus 900 fenVsFsY~~-----~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRly--dp~sGsI~IDG~DI~~i~ 972 (1192)
+++++++|+. ++++++++| +.+.+|+. ++|+||+|||||||+++|.|++ +|++|+|.+||+++..
T Consensus 6 ~~~ls~~~~~~~~~~~~~~l~~~~---~~i~~Ge~---~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~-- 77 (194)
T cd03213 6 FRNLTVTVKSSPSKSGKQLLKNVS---GKAKPGEL---TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK-- 77 (194)
T ss_pred EEeeEEEEecCCCcccccceecce---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--
Confidence 8999999975 367999999 99999998 9999999999999999999999 9999999999999875
Q ss_pred hHhhcccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 973 QASLRQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
...|+.|+|+||++.+|.+ |++||+.++. + .
T Consensus 78 -~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~----------------------------------------------~-~ 109 (194)
T cd03213 78 -RSFRKIIGYVPQDDILHPTLTVRETLMFAA----------------------------------------------K-L 109 (194)
T ss_pred -HhhhheEEEccCcccCCCCCcHHHHHHHHH----------------------------------------------H-h
Confidence 3678899999999999875 9999996531 1 0
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEe
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVA 1130 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIA 1130 (1192)
. .||||||||++||||++++|++++|||||++||.++.+.+.+.|++..+ ++|+|+||
T Consensus 110 ~---------------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 168 (194)
T cd03213 110 R---------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSI 168 (194)
T ss_pred c---------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 0 7999999999999999999999999999999999999999999998754 79999999
Q ss_pred cChh-HH-HhcCEEEEEeCCEEEEEc
Q psy13234 1131 HRLS-TI-IHADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1131 HRLS-TI-~~aDrIlVLe~G~IvE~G 1154 (1192)
|+++ .+ ..||+|++|++|++++.|
T Consensus 169 h~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred cCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9997 44 459999999999998765
No 252
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=339.33 Aligned_cols=218 Identities=27% Similarity=0.435 Sum_probs=178.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCe---ecCCCChHhh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ---NIKTVSQASL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~---DI~~i~~~sL 976 (1192)
.++++..|+. .+.+++|+ +.++.|+. +|+.||||||||||+|+|.|+..|++|.|.+||. |.++.. .-
T Consensus 5 i~~~~~~~~~-~~a~~di~---l~i~~Ge~---vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~ 75 (345)
T COG1118 5 INNVKKRFGA-FGALDDIS---LDIKSGEL---VALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VR 75 (345)
T ss_pred ehhhhhhccc-ccccccce---eeecCCcE---EEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hh
Confidence 5566666643 45677888 99998888 9999999999999999999999999999999999 777643 44
Q ss_pred cccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 977 RQAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
.++||+|.|+..||. -||++||+||-.- . ...|++ ...+.++.+.|+.+++..
T Consensus 76 ~R~VGfvFQ~YALF~HmtVa~NIAFGl~~-~-----------------~~~p~~--------~~~r~rv~elL~lvqL~~ 129 (345)
T COG1118 76 DRKVGFVFQHYALFPHMTVADNIAFGLKV-R-----------------KERPSE--------AEIRARVEELLRLVQLEG 129 (345)
T ss_pred hcceeEEEechhhcccchHHhhhhhcccc-c-----------------ccCCCh--------hhHHHHHHHHHHHhcccc
Confidence 567999999999887 7999999999420 0 000100 123455666677777766
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecCh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 1133 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRL 1133 (1192)
.-.+-| .+||||||||+|||||+..+|++|+||||.+|||++-.+.+++-|++..+ +.|+++|||+.
T Consensus 130 la~ryP-----------~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 130 LADRYP-----------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred hhhcCc-----------hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence 544443 57999999999999999999999999999999999999999998887654 58999999998
Q ss_pred hH-HHhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1134 ST-IIHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1134 ST-I~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+. .+.||||+||++|+|.+.|+++|.....
T Consensus 199 eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P 229 (345)
T COG1118 199 EEALELADRVVVLNQGRIEQVGPPDEVYDHP 229 (345)
T ss_pred HHHHhhcceEEEecCCeeeeeCCHHHHhcCC
Confidence 75 5789999999999999999999998653
No 253
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.7e-37 Score=344.60 Aligned_cols=217 Identities=26% Similarity=0.455 Sum_probs=184.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
.+|++..|..++.+++++| +.+.+|+. +|++||+|||||||+|+|+|+..|++|+|.++|.|...- ..+.|++
T Consensus 7 ~~~l~k~~~~~~~~l~~vs---~~i~~Gei---~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ 79 (293)
T COG1131 7 VRNLTKKYGGDKTALDGVS---FEVEPGEI---FGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRR 79 (293)
T ss_pred ecceEEEeCCCCEEEecee---EEEcCCeE---EEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhh
Confidence 6888999975578999999 99999999 999999999999999999999999999999999998776 7789999
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
|||+||+|.+++. |++||+.|... + + +.+. +..++++.++++..++.+.-
T Consensus 80 igy~~~~~~~~~~lT~~e~l~~~~~----------l-----~------~~~~-------~~~~~~~~~~l~~~~L~~~~- 130 (293)
T COG1131 80 IGYVPQEPSLYPELTVRENLEFFAR----------L-----Y------GLSK-------EEAEERIEELLELFGLEDKA- 130 (293)
T ss_pred eEEEccCCCCCccccHHHHHHHHHH----------H-----h------CCCh-------hHHHHHHHHHHHHcCCchhh-
Confidence 9999999998875 99999986321 0 0 0000 11245566677877775411
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC--ceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g--rTvIvIAHRLSTI 1136 (1192)
+ ..-..||+|||||++||+||+.+|++|+||||||+||+.+.+.+.+.|+++.+. +|+++.||.++.+
T Consensus 131 ------~----~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~ 200 (293)
T COG1131 131 ------N----KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEA 200 (293)
T ss_pred ------C----cchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHH
Confidence 2 334479999999999999999999999999999999999999999999988764 6999999999999
Q ss_pred Hh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1137 IH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1137 ~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.. ||+|++|++|+++..|+.+++...
T Consensus 201 ~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 201 EELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 87 999999999999999999998754
No 254
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-37 Score=320.44 Aligned_cols=168 Identities=29% Similarity=0.545 Sum_probs=154.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++++++|+. ++++++++ +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..+|+.
T Consensus 3 ~~~l~~~~~~-~~~l~~~~---~~i~~Ge~---~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~ 74 (173)
T cd03230 3 VRNLSKRYGK-KTALDDIS---LTVEKGEI---YGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRR 74 (173)
T ss_pred EEEEEEEECC-eeeeeeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-Hhhhcc
Confidence 7888898864 46899999 99999998 9999999999999999999999999999999999998766 678899
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|+||++.+|.+ |++||+ .
T Consensus 75 i~~~~q~~~~~~~~tv~~~~--------------------------------------------------~--------- 95 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENL--------------------------------------------------K--------- 95 (173)
T ss_pred EEEEecCCccccCCcHHHHh--------------------------------------------------h---------
Confidence 9999999999986 999886 2
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~ 1137 (1192)
||||||||++||||++++|++++|||||++||..+.+.+.+.|++..+ +.|+|++||+.+.+.
T Consensus 96 ----------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 96 ----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred ----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 999999999999999999999999999999999999999999998754 589999999999887
Q ss_pred -hcCEEEEEeCCEE
Q psy13234 1138 -HADEILVMHAGEI 1150 (1192)
Q Consensus 1138 -~aDrIlVLe~G~I 1150 (1192)
.||+|++|++|++
T Consensus 160 ~~~d~i~~l~~g~i 173 (173)
T cd03230 160 RLCDRVAILNNGRI 173 (173)
T ss_pred HhCCEEEEEeCCCC
Confidence 6999999999974
No 255
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.4e-37 Score=322.77 Aligned_cols=169 Identities=25% Similarity=0.456 Sum_probs=153.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-hHhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~-~~sLR~ 978 (1192)
++|++++| +++++| +.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+ .+..|+
T Consensus 7 ~~~l~~~~-----~l~~vs---~~i~~G~~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 7 VRGLSVKG-----AVRDVS---FEVRAGEI---VGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred EeccEEEe-----eecceE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhC
Confidence 78888887 788998 99999998 9999999999999999999999999999999999999887 456788
Q ss_pred cEEEEcCCC----ccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDT----VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp----~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
+++|+||++ .+++.|++||+.++. .
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~~----------------------------------------------~----- 104 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALSS----------------------------------------------L----- 104 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHHh----------------------------------------------h-----
Confidence 999999995 345579999996531 1
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRL 1133 (1192)
||||||||++||||++++|++++|||||++||+++.+.+.+.|++.. +++|+|++||++
T Consensus 105 --------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 105 --------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred --------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 99999999999999999999999999999999999999999999875 479999999999
Q ss_pred hHHHh-cCEEEEEeCCEE
Q psy13234 1134 STIIH-ADEILVMHAGEI 1150 (1192)
Q Consensus 1134 STI~~-aDrIlVLe~G~I 1150 (1192)
+.+.. ||+|++|++|++
T Consensus 165 ~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 165 DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHhCCEEEEecCCcC
Confidence 98876 999999999974
No 256
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-35 Score=328.72 Aligned_cols=457 Identities=18% Similarity=0.215 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 630 RSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTF 709 (1192)
Q Consensus 630 rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~ 709 (1192)
.+.....++|.+..++|.++.++++..|+..+++-++++++..++.|++.|+--.+ .+......+.-.+.+..|+ .+.
T Consensus 68 s~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s-~lp~~~qa~il~l~s~aYL-ayL 145 (546)
T COG4615 68 SQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFS-RLPELVQAIILTLGSAAYL-AYL 145 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHh-hhHHHHHHHHHHHHHHHHH-HHh
Confidence 34445668899999999999999999999999999999999999999988873322 2222333333333344444 345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHH--HHHHHHHHHHHHHHHH
Q psy13234 710 STWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEY--EIKEYGKAIQTYQVAE 787 (1192)
Q Consensus 710 ~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~--~~~rf~~~~~~~~~~~ 787 (1192)
+|.+-++.++.+.+.++...+...+..+..+...+.+.++.+..+..+.|.+..+......+ ..++|...-+.+++..
T Consensus 146 Sp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~ 225 (546)
T COG4615 146 SPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHI 225 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhh
Confidence 66655555555555555555555666666777788888999999999999999988754332 2233332222333211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q psy13234 788 YQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTN 867 (1192)
Q Consensus 788 ~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~ 867 (1192)
.........-....++++. +++...++.+ ..-+--+......+...+..+-.|+.++......+-++-++.+++.+
T Consensus 226 ~~~n~f~~la~~~~ni~l~-~lIGlvf~la---l~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiak 301 (546)
T COG4615 226 IRANTFHLLAVNWSNIMLL-GLIGLVFWLA---LSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAK 301 (546)
T ss_pred hhhhHHHHHHHHHHHHHHH-HHHHHHHHHH---HhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1111111011111122211 1111111111 11121222233445666777889999887777777666555555554
Q ss_pred cccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHH
Q psy13234 868 AKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTII 947 (1192)
Q Consensus 868 ~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLl 947 (1192)
++..+. ..+.+.+...+.. ..++ ++||.|+|++..-.+..|| ++++.|+- |-|+|.+||||||++
T Consensus 302 le~~~~------~a~~~~~q~~p~~-~~le--lrnvrfay~~~~FhvgPiN---l~ikrGel---vFliG~NGsGKST~~ 366 (546)
T COG4615 302 LELAPY------KADFPRPQAFPDW-KTLE--LRNVRFAYQDNAFHVGPIN---LTIKRGEL---VFLIGGNGSGKSTLA 366 (546)
T ss_pred hhcCCc------cccCCCCCcCCcc-ccee--eeeeeeccCcccceeccee---eEEecCcE---EEEECCCCCcHHHHH
Confidence 432110 1111111122222 3567 9999999987544444555 77777777 999999999999999
Q ss_pred HHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccC-CCHHHHHHHhhhhhhhhhhccC
Q psy13234 948 RLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARIN-ASEEEVKEAATSADIHERILSF 1026 (1192)
Q Consensus 948 rLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~-asdEeV~eAa~~a~lh~~i~~~ 1026 (1192)
++|.|+|.|++|+|++||.+++.-++++.|+-++-|.-|-+||+.++ |.+. ++++.+.+-.
T Consensus 367 ~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~L------------ 428 (546)
T COG4615 367 MLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWL------------ 428 (546)
T ss_pred HHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHH------------
Confidence 99999999999999999999999999999999999999999999865 3222 4555444333
Q ss_pred CCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q psy13234 1027 PDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106 (1192)
Q Consensus 1027 pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD 1106 (1192)
+.-.+.... ++-+|==+ -.+||-|||.|+|+-=|++-+.||++|||=-+--|
T Consensus 429 ----------------------qrLel~~kt-sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 429 ----------------------QRLELAHKT-SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480 (546)
T ss_pred ----------------------HHHHHhhhh-cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence 222222211 12222111 25899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--cCCceEEEEecChhHHHhcCEEEEEeCCEEEEE
Q psy13234 1107 TKTERNIQSALNRV--CASRTTIIVAHRLSTIIHADEILVMHAGEIVER 1153 (1192)
Q Consensus 1107 ~eTE~~Iq~aL~~l--~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~ 1153 (1192)
|.=.+...+.+--. .+|||++.|||+-..-.+|||++.|++|+++|.
T Consensus 481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 481 PAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 99999986655322 258999999999999999999999999999986
No 257
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.3e-36 Score=333.49 Aligned_cols=218 Identities=24% Similarity=0.393 Sum_probs=177.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+++. .+++++| +.+.+|+. ++|+|++|||||||+++|.|++++ +|+|.+||+++.+.+...+++.
T Consensus 3 ~~~l~~~-----~~l~~vs---l~i~~Gei---~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~ 70 (248)
T PRK03695 3 LNDVAVS-----TRLGPLS---AEVRAGEI---LHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARH 70 (248)
T ss_pred ccccchh-----ceecceE---EEEcCCCE---EEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhh
Confidence 4556554 2678888 99999888 999999999999999999999965 8999999999998888888899
Q ss_pred EEEEcCCCc-cccccHHHHHhccccCC-CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDTV-LFNNSIKFNIQYARINA-SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp~-LFnGTIreNI~~G~~~a-sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
++|+||++. +++.|+++|+.++.+.. +.++ .++++.++++..++.+..
T Consensus 71 i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~~~~ 120 (248)
T PRK03695 71 RAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEA------------------------------VASALNEVAEALGLDDKL 120 (248)
T ss_pred eEEecccCccCCCccHHHHHHhcCccCCCcHH------------------------------HHHHHHHHHHHcCCHhHh
Confidence 999999985 55789999998763211 1111 123344555666664432
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcC-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEE
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIV 1129 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLr-------dP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvI 1129 (1192)
......||||||||++||||++. +|+++||||||++||+++.+.+.+.|++.. +++|+|++
T Consensus 121 -----------~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~ 189 (248)
T PRK03695 121 -----------GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMS 189 (248)
T ss_pred -----------cCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 23445799999999999999997 679999999999999999999999998875 46999999
Q ss_pred ecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1130 AHRLSTI-IHADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1130 AHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
||+++.+ ..||+|++|++|++++.|+++++... ...++.+.
T Consensus 190 sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 231 (248)
T PRK03695 190 SHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP-ENLAQVFG 231 (248)
T ss_pred ecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc-hHHHHHhC
Confidence 9999966 56999999999999999999998753 34455553
No 258
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-37 Score=320.53 Aligned_cols=170 Identities=34% Similarity=0.547 Sum_probs=156.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC--hHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--QASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~--~~sLR 977 (1192)
++|++++|+. ++++++++ +++.+|+. ++|+||||||||||+++|+|+++|++|+|.+||+++.+++ ....+
T Consensus 3 ~~~l~~~~~~-~~~l~~i~---~~i~~G~~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (178)
T cd03229 3 LKNVSKRYGQ-KTVLNDVS---LNIEAGEI---VALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75 (178)
T ss_pred EEEEEEEECC-eEEEeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHh
Confidence 7888999964 56899999 99999999 9999999999999999999999999999999999998886 67788
Q ss_pred ccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 978 QAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++++|+||++.+|. .|++||+.+ .
T Consensus 76 ~~i~~~~q~~~~~~~~t~~~~l~~------------------------------------------------~------- 100 (178)
T cd03229 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------------------G------- 100 (178)
T ss_pred hcEEEEecCCccCCCCCHHHheee------------------------------------------------c-------
Confidence 99999999999986 499999742 1
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
||||||||++||||++++|++++|||||++||+++.+.+.+.|++..+ ++|+|++||+++
T Consensus 101 ------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 101 ------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred ------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999999999999999999999999999999999998765 589999999999
Q ss_pred HHH-hcCEEEEEeCCE
Q psy13234 1135 TII-HADEILVMHAGE 1149 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~ 1149 (1192)
.+. .||+|++|++|+
T Consensus 163 ~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 163 EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHhcCEEEEEeCCC
Confidence 998 599999999985
No 259
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.6e-36 Score=333.73 Aligned_cols=205 Identities=26% Similarity=0.410 Sum_probs=173.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.++| +..
T Consensus 7 ~~~l~~~~~~-~~vl~~vs---~~i~~Ge~---~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~ 68 (251)
T PRK09544 7 LENVSVSFGQ-RRVLSDVS---LELKPGKI---LTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLR 68 (251)
T ss_pred EeceEEEECC-ceEEEeEE---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccC
Confidence 8899999964 56899999 99999998 999999999999999999999999999999987 347
Q ss_pred EEEEcCCCcccc---ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN---NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn---GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
|+|+||++.++. .|+++|+.+. ++.++++ +.++++..++.+.
T Consensus 69 i~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~----------------------------------~~~~l~~~gl~~~ 113 (251)
T PRK09544 69 IGYVPQKLYLDTTLPLTVNRFLRLR-PGTKKED----------------------------------ILPALKRVQAGHL 113 (251)
T ss_pred EEEeccccccccccChhHHHHHhcc-ccccHHH----------------------------------HHHHHHHcCChHH
Confidence 999999998876 3888888653 2223333 3445577887765
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
+.+ ....||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|+|||+++
T Consensus 114 ~~~-----------~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~ 182 (251)
T PRK09544 114 IDA-----------PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182 (251)
T ss_pred HhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 533 2357999999999999999999999999999999999999999999988754 789999999999
Q ss_pred HHH-hcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1135 TII-HADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
.+. .||+|++|++ ++++.|+++|+.+ +..|.+++
T Consensus 183 ~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 183 LVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred HHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 985 5999999965 7999999999874 45677777
No 260
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.7e-36 Score=322.23 Aligned_cols=184 Identities=23% Similarity=0.388 Sum_probs=160.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCeecCCCChHhh-
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVSQASL- 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl--ydp~sGsI~IDG~DI~~i~~~sL- 976 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+ ++|++|+|.+||+++.+.+....
T Consensus 3 ~~~l~~~~~~-~~~l~~is---~~i~~Ge~---~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (200)
T cd03217 3 IKDLHVSVGG-KEILKGVN---LTIKKGEV---HALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERA 75 (200)
T ss_pred EEEEEEEeCC-EEeeeccc---eEECCCcE---EEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHh
Confidence 7889999974 57899999 99999999 999999999999999999999 58999999999999999887654
Q ss_pred cccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 977 RQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
|++++|+||++.+|+++..+|+. +
T Consensus 76 ~~~i~~v~q~~~~~~~~~~~~~l-------------------------------------------------~------- 99 (200)
T cd03217 76 RLGIFLAFQYPPEIPGVKNADFL-------------------------------------------------R------- 99 (200)
T ss_pred hCcEEEeecChhhccCccHHHHH-------------------------------------------------h-------
Confidence 56699999999998865443321 0
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLST 1135 (1192)
.. ...||||||||++||||++++|+|++|||||++||+++.+.+.+.|++..+ ++|+|++||+++.
T Consensus 100 --~~-----------~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~ 166 (200)
T cd03217 100 --YV-----------NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166 (200)
T ss_pred --hc-----------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 00 136999999999999999999999999999999999999999999998754 6899999999999
Q ss_pred HH--hcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1136 II--HADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1136 I~--~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
+. .||+|++|++|++++.| +.|+.
T Consensus 167 ~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 167 LDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred HHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 88 59999999999999999 44454
No 261
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.4e-36 Score=374.04 Aligned_cols=214 Identities=22% Similarity=0.372 Sum_probs=176.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC--CceEEECCeecCCCChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE--SGDIFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~--sGsI~IDG~DI~~i~~~sLR 977 (1192)
.++++.+|+ ++.+++++| +.+.+|+. +||+||||||||||+++|.|+.+|+ +|+|.+||+++. ++.+
T Consensus 71 ~~~l~~~~~-~~~iL~~vs---~~i~~Ge~---~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~ 139 (659)
T PLN03211 71 ISDETRQIQ-ERTILNGVT---GMASPGEI---LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQIL 139 (659)
T ss_pred cccccccCC-CCeeeeCCE---EEEECCEE---EEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhc
Confidence 344455554 356899999 99999998 9999999999999999999999985 899999999874 2456
Q ss_pred ccEEEEcCCCcccc-ccHHHHHhccc----c-CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 978 QAIGVVPQDTVLFN-NSIKFNIQYAR----I-NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFn-GTIreNI~~G~----~-~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
+++|||||++.+|+ .|++|||.++. + +.+++|. ++++.++++..
T Consensus 140 ~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~------------------------------~~~v~~~l~~l 189 (659)
T PLN03211 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEK------------------------------ILVAESVISEL 189 (659)
T ss_pred cceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHH------------------------------HHHHHHHHHHc
Confidence 78999999999996 59999998752 1 1122211 12233444544
Q ss_pred ChHHHHhcCCCCCcccccCC-CCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEE
Q psy13234 1052 DIHERILSFPDGYDTQVGER-GLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIV 1129 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGEr-G~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvI 1129 (1192)
++ ++..||.||++ ...||||||||++||||++++|+||+||||||+||+.+++.+.+.|+++. +++|+|++
T Consensus 190 gL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~ 262 (659)
T PLN03211 190 GL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262 (659)
T ss_pred CC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 44 44569999865 67899999999999999999999999999999999999999999999876 57999999
Q ss_pred ecChhH--HHhcCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1130 AHRLST--IIHADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1130 AHRLST--I~~aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
+|+++. ...+|+|++|++|++++.|+++++.+
T Consensus 263 sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 263 MHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred ecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999984 46799999999999999999999864
No 262
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-36 Score=315.12 Aligned_cols=168 Identities=45% Similarity=0.714 Sum_probs=156.9
Q ss_pred cccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|+++.|+.. .+++++++ +.+.+|+. ++|+||+|||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~---~~i~~G~~---~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVS---LTIKPGEK---VAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred EEEEEEEcCCCCcccccceE---EEEcCCCE---EEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 77888988653 36889999 99999999 9999999999999999999999999999999999999888888899
Q ss_pred cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
+++|+||++.+|+.|++||+
T Consensus 77 ~i~~~~~~~~~~~~t~~e~l------------------------------------------------------------ 96 (171)
T cd03228 77 NIAYVPQDPFLFSGTIRENI------------------------------------------------------------ 96 (171)
T ss_pred hEEEEcCCchhccchHHHHh------------------------------------------------------------
Confidence 99999999999998887661
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~ 1138 (1192)
||||||||++||||++.+|++++|||||++||+++.+.+.+.|++..+++|+|++||+++.+..
T Consensus 97 ----------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 97 ----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred ----------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 9999999999999999999999999999999999999999999998778999999999999989
Q ss_pred cCEEEEEeCCE
Q psy13234 1139 ADEILVMHAGE 1149 (1192)
Q Consensus 1139 aDrIlVLe~G~ 1149 (1192)
||++++|++|+
T Consensus 161 ~d~~~~l~~g~ 171 (171)
T cd03228 161 ADRIIVLDDGR 171 (171)
T ss_pred CCEEEEEcCCC
Confidence 99999999985
No 263
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.4e-36 Score=314.28 Aligned_cols=162 Identities=32% Similarity=0.423 Sum_probs=149.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++++++|+.++++++++| +.+.+|+. ++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 3 ~~~~~~~~~~~~~~l~~i~---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~ 65 (166)
T cd03223 3 LENLSLATPDGRVLLKDLS---FEIKPGDR---LLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------ED 65 (166)
T ss_pred EEEEEEEcCCCCeeeecCe---EEECCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ce
Confidence 7889999975567899999 99999999 9999999999999999999999999999999883 68
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
++|+||++.++++|++|||.++
T Consensus 66 i~~~~q~~~~~~~tv~~nl~~~---------------------------------------------------------- 87 (166)
T cd03223 66 LLFLPQRPYLPLGTLREQLIYP---------------------------------------------------------- 87 (166)
T ss_pred EEEECCCCccccccHHHHhhcc----------------------------------------------------------
Confidence 9999999999999999998531
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhc
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHA 1139 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~a 1139 (1192)
....||||||||++||||++++|+++||||||++||.++.+.+.+.|++. ++|+|+|||+++....|
T Consensus 88 -----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~ 154 (166)
T cd03223 88 -----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFH 154 (166)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhC
Confidence 23589999999999999999999999999999999999999999999986 69999999999998999
Q ss_pred CEEEEEeCCE
Q psy13234 1140 DEILVMHAGE 1149 (1192)
Q Consensus 1140 DrIlVLe~G~ 1149 (1192)
|+|++|++|-
T Consensus 155 d~i~~l~~~~ 164 (166)
T cd03223 155 DRVLDLDGEG 164 (166)
T ss_pred CEEEEEcCCC
Confidence 9999998763
No 264
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.4e-36 Score=327.91 Aligned_cols=202 Identities=25% Similarity=0.409 Sum_probs=160.7
Q ss_pred ecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcc---ccccHHHHHhc
Q psy13234 924 ALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL---FNNSIKFNIQY 1000 (1192)
Q Consensus 924 i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~L---FnGTIreNI~~ 1000 (1192)
+.+|+. +||+|+||||||||+++|.|+++|++|+|.+||+++. ..|++++|+||++.+ |+.|+++|+.+
T Consensus 3 i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 74 (223)
T TIGR03771 3 ADKGEL---LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMS 74 (223)
T ss_pred cCCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHh
Confidence 445555 9999999999999999999999999999999999864 357889999999987 45899999987
Q ss_pred cccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHH
Q psy13234 1001 ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEK 1080 (1192)
Q Consensus 1001 G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQK 1080 (1192)
+...... .+..+ ....++++.++++..++.+.. ++.+ ..||||||
T Consensus 75 ~~~~~~~-----------------~~~~~-------~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~ 119 (223)
T TIGR03771 75 GRTGHIG-----------------WLRRP-------CVADFAAVRDALRRVGLTELA-------DRPV----GELSGGQR 119 (223)
T ss_pred ccccccc-----------------cccCC-------cHHHHHHHHHHHHHhCCchhh-------cCCh----hhCCHHHH
Confidence 5210000 00000 001234566677888776543 3333 35999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHH
Q psy13234 1081 QRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEE 1158 (1192)
Q Consensus 1081 QRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheE 1158 (1192)
||++||||++++|+++||||||++||..+.+.+.+.|++.. +++|+|++||+++.+. .||+|+++ +|++++.|++++
T Consensus 120 qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~ 198 (223)
T TIGR03771 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHH
Confidence 99999999999999999999999999999999999999875 4789999999999875 59999999 899999999999
Q ss_pred HHhcCcHHHHHH
Q psy13234 1159 LLERNGVYASMW 1170 (1192)
Q Consensus 1159 LL~~~G~Ya~L~ 1170 (1192)
+.+. ..+.+++
T Consensus 199 ~~~~-~~~~~~~ 209 (223)
T TIGR03771 199 LQDP-APWMTTF 209 (223)
T ss_pred hcCh-HHHHHHh
Confidence 8764 3455554
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=369.70 Aligned_cols=225 Identities=26% Similarity=0.357 Sum_probs=183.2
Q ss_pred cccceeeecC----------CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC
Q psy13234 900 MEEDQFGFRK----------GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 969 (1192)
Q Consensus 900 fenVsFsY~~----------~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~ 969 (1192)
++|+++.|+. +..+++++| |.+.+|+. +||+|+||||||||+++|.|+.+|++|+|.+||.++.
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs---~~i~~Ge~---~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVS---FDLWPGET---LSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeE---eEEcCCCE---EEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 8899999962 135788998 99999988 9999999999999999999999999999999999998
Q ss_pred CCChH---hhcccEEEEcCCCc--ccc-ccHHHHHhcccc--CC-CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhccc
Q psy13234 970 TVSQA---SLRQAIGVVPQDTV--LFN-NSIKFNIQYARI--NA-SEEEVKEAATSADIHERILSFPDGYDTQYARINAS 1040 (1192)
Q Consensus 970 ~i~~~---sLR~~Ig~VPQDp~--LFn-GTIreNI~~G~~--~a-sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~s 1040 (1192)
..+.. .+|++|+||||++. +++ -|+.+|+.++.. +. +.+ ..
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~------------------------------~~ 439 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGK------------------------------AA 439 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHH------------------------------HH
Confidence 77643 46789999999983 665 599999975310 00 010 11
Q ss_pred HHHHHHHHHHcChH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy13234 1041 EEEVKEAATSADIH-ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR 1119 (1192)
Q Consensus 1041 deeI~~AL~~A~Lh-d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~ 1119 (1192)
++++.++|+..++. +... .. -..||||||||++|||||+.+|++||||||||+||..+.+.|.+.|++
T Consensus 440 ~~~~~~~L~~~gL~~~~~~-------~~----~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 440 AARVAWLLERVGLLPEHAW-------RY----PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHHHHHHHHHcCCCHHHhh-------CC----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 24455666777773 3322 22 236999999999999999999999999999999999999999999988
Q ss_pred HcC--CceEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc-CcHHHH-HHH
Q psy13234 1120 VCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER-NGVYAS-MWI 1171 (1192)
Q Consensus 1120 l~~--grTvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~-L~~ 1171 (1192)
+.+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|+.+++... ...|.+ ++.
T Consensus 509 l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 509 LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 753 6899999999998865 999999999999999999999864 345654 443
No 266
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.3e-36 Score=317.73 Aligned_cols=176 Identities=31% Similarity=0.497 Sum_probs=157.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++.+.+...+++.
T Consensus 2 ~~~l~~~~~~-~~~l~~~~---~~i~~G~~---~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~ 74 (180)
T cd03214 2 VENLSVGYGG-RTVLDDLS---LSIEAGEI---VGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74 (180)
T ss_pred eeEEEEEECC-eeeEeeeE---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHH
Confidence 6788999965 56899999 99999988 99999999999999999999999999999999999999888888899
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
|+|+|| ++ +..++.+.+.+
T Consensus 75 i~~~~q---------------------------~l----------------------------------~~~gl~~~~~~ 93 (180)
T cd03214 75 IAYVPQ---------------------------AL----------------------------------ELLGLAHLADR 93 (180)
T ss_pred HhHHHH---------------------------HH----------------------------------HHcCCHhHhcC
Confidence 999999 22 45556554332
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH-
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI- 1136 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI- 1136 (1192)
....||||||||++||||++++|+++||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+
T Consensus 94 -----------~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 94 -----------PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred -----------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3457999999999999999999999999999999999999999999998765 78999999999997
Q ss_pred HhcCEEEEEeCCEEEEEc
Q psy13234 1137 IHADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1137 ~~aDrIlVLe~G~IvE~G 1154 (1192)
..||++++|++|++++.|
T Consensus 163 ~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 163 RYADRVILLKDGRIVAQG 180 (180)
T ss_pred HhCCEEEEEECCEEEecC
Confidence 569999999999998754
No 267
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-36 Score=360.67 Aligned_cols=214 Identities=21% Similarity=0.309 Sum_probs=177.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCeecCCCChHh-h
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV--ESGDIFIDNQNIKTVSQAS-L 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp--~sGsI~IDG~DI~~i~~~s-L 976 (1192)
++|++++|+ ++++++++| +.+.+|+. ++|+||||||||||+|+|.|+++| ++|+|.+||.++...+... .
T Consensus 8 ~~nl~~~~~-~~~il~~is---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 8 MKNITKTFG-GVKALDNVS---LKVRAGEI---VSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred EeeeEEEeC-CeEeeccee---EEEeCCeE---EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 889999996 356899999 99999988 999999999999999999999996 8999999999998877654 4
Q ss_pred cccEEEEcCCCccccc-cHHHHHhccccC-----CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 977 RQAIGVVPQDTVLFNN-SIKFNIQYARIN-----ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnG-TIreNI~~G~~~-----asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
|+.|+||||++.+|+. |++|||.++... .+.++ ..+++.++++.
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~ 130 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDA------------------------------MYLRAQKLLAQ 130 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHH------------------------------HHHHHHHHHHH
Confidence 6789999999998875 999999876311 01111 12234445555
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEE
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIV 1129 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvI 1129 (1192)
.++.+ -.+..+ ..||||||||++||||++.+|+|||||||||+||+++.+.+.+.|+++. +++|+|+|
T Consensus 131 ~~l~~-------~~~~~~----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~ 199 (506)
T PRK13549 131 LKLDI-------NPATPV----GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYI 199 (506)
T ss_pred cCCCC-------Ccccch----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 55422 223333 4799999999999999999999999999999999999999999998874 46899999
Q ss_pred ecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1130 AHRLSTII-HADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1130 AHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 200 tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 200 SHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred eCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 99999886 499999999999999999888653
No 268
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.2e-36 Score=360.79 Aligned_cols=214 Identities=24% Similarity=0.350 Sum_probs=180.3
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s 975 (1192)
++ ++|++++|+. +++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++...+...
T Consensus 12 l~--~~~l~~~~~~-~~il~~vs---l~i~~Ge~---~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 12 LC--ARSISKQYSG-VEVLKGID---FTLHAGEV---HALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82 (510)
T ss_pred EE--EEeEEEEeCC-ceeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 55 8899999964 56899999 99999888 9999999999999999999999999999999999998887666
Q ss_pred hc-ccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 976 LR-QAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 976 LR-~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
.+ +.++||||++.+|.. |++||+.++.... ++ .++++.++++..++
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~------------------------------~~~~~~~~l~~~~l 130 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKR--QA------------------------------SMQKMKQLLAALGC 130 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhcccccc--hH------------------------------HHHHHHHHHHHcCC
Confidence 54 579999999998885 9999998763210 00 12334445566655
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHR 1132 (1192)
.+ -++..+ ..||||||||++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+
T Consensus 131 ~~-------~~~~~~----~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 199 (510)
T PRK15439 131 QL-------DLDSSA----GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHK 199 (510)
T ss_pred Cc-------cccCCh----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 32 233333 4799999999999999999999999999999999999999999998874 46899999999
Q ss_pred hhHHH-hcCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1133 LSTII-HADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1133 LSTI~-~aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
++.+. .||+|++|++|++++.|+++++.+
T Consensus 200 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 200 LPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99875 599999999999999999998764
No 269
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4e-36 Score=342.29 Aligned_cols=185 Identities=34% Similarity=0.494 Sum_probs=156.7
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHH
Q psy13234 935 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVK 1011 (1192)
Q Consensus 935 IVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~ 1011 (1192)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|+|+||++.+|+. |++||+.|+.. ..++++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-- 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAE-- 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHH--
Confidence 589999999999999999999999999999999987664 46789999999999975 99999998631 111111
Q ss_pred HHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcC
Q psy13234 1012 EAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK 1091 (1192)
Q Consensus 1012 eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLr 1091 (1192)
.++++.++++..++.+...+. ..+||||||||+|||||+++
T Consensus 77 ----------------------------~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRvalaraL~~ 117 (325)
T TIGR01187 77 ----------------------------IKPRVLEALRLVQLEEFADRK-----------PHQLSGGQQQRVALARALVF 117 (325)
T ss_pred ----------------------------HHHHHHHHHHHcCCcchhcCC-----------hhhCCHHHHHHHHHHHHHHh
Confidence 123455566777775544333 34799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+|+++|||||||+||+++.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|+++|+.++
T Consensus 118 ~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999988754 799999999999875 5999999999999999999999865
No 270
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.4e-36 Score=325.47 Aligned_cols=196 Identities=26% Similarity=0.373 Sum_probs=160.2
Q ss_pred CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEc-CCCcc
Q psy13234 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVP-QDTVL 989 (1192)
Q Consensus 911 ~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VP-QDp~L 989 (1192)
+++++++| +.+.+|+. ++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ....|++++|+| |++.+
T Consensus 34 ~~il~~vs---~~i~~Ge~---~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 34 VEALKGIS---FTIEKGEI---VGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred eeeeecee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCcccc
Confidence 46899999 99999988 999999999999999999999999999999999987653 356788999997 66777
Q ss_pred c-cccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcc
Q psy13234 990 F-NNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDT 1066 (1192)
Q Consensus 990 F-nGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT 1066 (1192)
| +.|++||+.+... ..++++. .+++.++++..++.+ ..|+
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~gl~~-------~~~~ 149 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARF------------------------------KKRLDELSELLDLEE-------LLDT 149 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHH------------------------------HHHHHHHHHHcCChh-------HhcC
Confidence 6 5799999976421 1122221 122334445555543 2344
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHHh-cCEEE
Q psy13234 1067 QVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEIL 1143 (1192)
Q Consensus 1067 ~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~~-aDrIl 1143 (1192)
.+ ..||||||||++||||++.+|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|+
T Consensus 150 ~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 225 (236)
T cd03267 150 PV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL 225 (236)
T ss_pred Ch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEE
Confidence 44 36999999999999999999999999999999999999999999998753 6899999999998754 99999
Q ss_pred EEeCCEEEEEc
Q psy13234 1144 VMHAGEIVERG 1154 (1192)
Q Consensus 1144 VLe~G~IvE~G 1154 (1192)
+|++|++++.|
T Consensus 226 ~l~~G~i~~~g 236 (236)
T cd03267 226 VIDKGRLLYDG 236 (236)
T ss_pred EEeCCEEEecC
Confidence 99999998765
No 271
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=359.92 Aligned_cols=213 Identities=23% Similarity=0.353 Sum_probs=174.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh-Hhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~-~sLR~ 978 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++...+. +.+|+
T Consensus 1 ~~nl~~~~~~-~~il~~vs---~~i~~Ge~---~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPG-VKALDNVN---LKVRPHSI---HALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCC-EEeeeeee---EEEcCCcE---EEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 3678888864 56899999 99999998 99999999999999999999999999999999999977654 45678
Q ss_pred cEEEEcCCCcccc-ccHHHHHhccccCC-----CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 979 AIGVVPQDTVLFN-NSIKFNIQYARINA-----SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 979 ~Ig~VPQDp~LFn-GTIreNI~~G~~~a-----sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
.++||||++.+|. .|++||+.++.... ++++. .+++.++++..+
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~ 123 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKM------------------------------YRDTKAIFDELD 123 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHH------------------------------HHHHHHHHHHcC
Confidence 8999999998776 59999998763110 11111 122334444444
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEec
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAH 1131 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAH 1131 (1192)
+. ........+||||||||++||||++++|++||||||||+||+++.+.+.+.|+++. +++|+|+|||
T Consensus 124 l~-----------~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH 192 (491)
T PRK10982 124 ID-----------IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISH 192 (491)
T ss_pred CC-----------CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 32 22233455799999999999999999999999999999999999999999998864 4689999999
Q ss_pred ChhHHH-hcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1132 RLSTII-HADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1132 RLSTI~-~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
+++.+. .||+|++|++|++++.|+++++.
T Consensus 193 ~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 193 KMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999875 59999999999999999988864
No 272
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.6e-36 Score=371.91 Aligned_cols=211 Identities=25% Similarity=0.362 Sum_probs=175.5
Q ss_pred CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCeecCCCChHhhcccEEEEcCC
Q psy13234 910 GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQNIKTVSQASLRQAIGVVPQD 986 (1192)
Q Consensus 910 ~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~---sGsI~IDG~DI~~i~~~sLR~~Ig~VPQD 986 (1192)
++++++++| +.+++|+. +||+||||||||||+++|.|..+|. +|+|.+||.+++ ...+|+.+||||||
T Consensus 37 ~~~iL~~vs---~~i~~Ge~---~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~ 107 (617)
T TIGR00955 37 RKHLLKNVS---GVAKPGEL---LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQD 107 (617)
T ss_pred ccccccCCE---EEEeCCeE---EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccc
Confidence 467899999 99999999 9999999999999999999999885 799999999875 46789999999999
Q ss_pred Ccccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCc
Q psy13234 987 TVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYD 1065 (1192)
Q Consensus 987 p~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyD 1065 (1192)
+.+|+ .||+|||.|+..- +.|....+ +..++++.++++..+ +++..|
T Consensus 108 ~~~~~~lTV~e~l~f~~~~--------------------~~~~~~~~-----~~~~~~v~~~l~~lg-------L~~~~~ 155 (617)
T TIGR00955 108 DLFIPTLTVREHLMFQAHL--------------------RMPRRVTK-----KEKRERVDEVLQALG-------LRKCAN 155 (617)
T ss_pred cccCccCcHHHHHHHHHhc--------------------CCCCCCCH-----HHHHHHHHHHHHHcC-------chhcCc
Confidence 99996 5999999876321 01111000 001223444444444 455789
Q ss_pred ccccCC--CCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChh--HHHhcC
Q psy13234 1066 TQVGER--GLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS--TIIHAD 1140 (1192)
Q Consensus 1066 T~VGEr--G~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLS--TI~~aD 1140 (1192)
|+||+. +..||||||||++||||++++|++++||||||+||+.+...+.+.|++..+ ++|+|+++|+++ ....+|
T Consensus 156 t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D 235 (617)
T TIGR00955 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFD 235 (617)
T ss_pred CccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhc
Confidence 999985 478999999999999999999999999999999999999999999998764 799999999996 357899
Q ss_pred EEEEEeCCEEEEEcCHHHHHh
Q psy13234 1141 EILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1141 rIlVLe~G~IvE~GtheELL~ 1161 (1192)
+|++|++|+++++|+++|+.+
T Consensus 236 ~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 236 KIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred eEEEeeCCeEEEECCHHHHHH
Confidence 999999999999999998853
No 273
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=362.92 Aligned_cols=223 Identities=22% Similarity=0.304 Sum_probs=178.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-hcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s-LR~ 978 (1192)
++|++++|+. +++++++| |.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++...+... .|+
T Consensus 8 ~~~l~~~~~~-~~il~~vs---~~i~~Ge~---~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 8 MAGIGKSFGP-VHALKSVN---LTVYPGEI---HALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred EeeeEEEcCC-eEEeeeee---EEEcCCcE---EEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 8899999964 56899999 99999998 9999999999999999999999999999999999998887654 356
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
+|+||||++.+|.+ |++||+.++...... . . ..+ ..+. ...++++.++++..++.+
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--~---~----------~~~-~~~~-----~~~~~~~~~~l~~~gl~~-- 137 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKK--V---C----------GVN-IIDW-----REMRVRAAMMLLRVGLKV-- 137 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccc--c---c----------ccc-ccCH-----HHHHHHHHHHHHHcCCCC--
Confidence 79999999998875 999999875310000 0 0 000 0000 001234455556655532
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI 1136 (1192)
-.+.++ ..||||||||++||||++.+|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+
T Consensus 138 -----~~~~~~----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~ 208 (510)
T PRK09700 138 -----DLDEKV----ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEI 208 (510)
T ss_pred -----Ccccch----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 234444 47999999999999999999999999999999999999999999988743 69999999999988
Q ss_pred H-hcCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1137 I-HADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
. .||+|++|++|++++.|+++++..
T Consensus 209 ~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 209 RRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHhCCEEEEEECCEEeeecchhhCCH
Confidence 6 599999999999999999988754
No 274
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=6e-36 Score=314.65 Aligned_cols=180 Identities=31% Similarity=0.436 Sum_probs=148.7
Q ss_pred CCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC--CChHhhcccEEEEcCC
Q psy13234 909 KGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLRQAIGVVPQD 986 (1192)
Q Consensus 909 ~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~--i~~~sLR~~Ig~VPQD 986 (1192)
.++.+++++| +++.+|+. +||+||||||||||+++|.|+++|++|+|.+||+++.. .+...+|+.++|+||+
T Consensus 3 ~~~~il~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 76 (190)
T TIGR01166 3 GGPEVLKGLN---FAAERGEV---LALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQD 76 (190)
T ss_pred Cccceeccee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecC
Confidence 3456888998 99999988 99999999999999999999999999999999999852 2345678899999999
Q ss_pred C--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCC
Q psy13234 987 T--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062 (1192)
Q Consensus 987 p--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~ 1062 (1192)
+ .+|+.|++|||.++.. ..++++ .++++.++++..++.+...+.
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~~~~~~~-- 124 (190)
T TIGR01166 77 PDDQLFAADVDQDVAFGPLNLGLSEAE------------------------------VERRVREALTAVGASGLRERP-- 124 (190)
T ss_pred hhhccccccHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHcCchhhhhCC--
Confidence 8 5888999999987521 111111 123455666777776554332
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhH
Q psy13234 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 1135 (1192)
Q Consensus 1063 GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLST 1135 (1192)
...||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.
T Consensus 125 ---------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 125 ---------THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred ---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 247999999999999999999999999999999999999999999988754 6899999999864
No 275
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=9.6e-36 Score=316.46 Aligned_cols=193 Identities=21% Similarity=0.289 Sum_probs=161.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+++.|+. +++++++| +.+.+|+. +||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++
T Consensus 3 i~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~ 74 (201)
T cd03231 3 ADELTCERDG-RALFSGLS---FTLAAGEA---LQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARG 74 (201)
T ss_pred EEEEEEEeCC-ceeeccce---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhh
Confidence 7888898864 46889999 99999998 9999999999999999999999999999999999987654 578899
Q ss_pred EEEEcCCCccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|+||++.++ +.|++||+.+..+..++ +++.++++..++.+..
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------------------------------~~~~~~l~~~~l~~~~- 119 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHADHSD----------------------------------EQVEEALARVGLNGFE- 119 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhcccccH----------------------------------HHHHHHHHHcCChhhh-
Confidence 99999999886 58999999875432222 3344445777775432
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhH-H
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLST-I 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLST-I 1136 (1192)
++. ...||||||||++||||++++|+++||||||++||+++.+.+.+.|++.. +++|+|+|||+... .
T Consensus 120 ------~~~----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~ 189 (201)
T cd03231 120 ------DRP----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189 (201)
T ss_pred ------cCc----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhh
Confidence 222 34799999999999999999999999999999999999999999998765 47999999998665 4
Q ss_pred HhcCEEEEE
Q psy13234 1137 IHADEILVM 1145 (1192)
Q Consensus 1137 ~~aDrIlVL 1145 (1192)
..+|+++++
T Consensus 190 ~~~~~~~~~ 198 (201)
T cd03231 190 EAGARELDL 198 (201)
T ss_pred hccceeEec
Confidence 668888877
No 276
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.3e-36 Score=317.41 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=164.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. +||+||+|||||||+++|+|+++|++|+|.+||.++.... ...+++
T Consensus 4 ~~~l~~~~~~-~~~l~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~ 75 (204)
T PRK13538 4 ARNLACERDE-RILFSGLS---FTLNAGEL---VQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQD 75 (204)
T ss_pred EEEEEEEECC-EEEEecce---EEECCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhh
Confidence 7788888864 46899999 99999998 9999999999999999999999999999999999998654 467889
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|++|++.+++ .|++||+.++.+... ..+++++.++++..++.+...
T Consensus 76 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~-------------------------------~~~~~~~~~~l~~~gl~~~~~ 124 (204)
T PRK13538 76 LLYLGHQPGIKTELTALENLRFYQRLHG-------------------------------PGDDEALWEALAQVGLAGFED 124 (204)
T ss_pred eEEeCCccccCcCCcHHHHHHHHHHhcC-------------------------------ccHHHHHHHHHHHcCCHHHhh
Confidence 999999999887 699999987532100 012345556668888865432
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~ 1137 (1192)
+. ...||||||||++||||++++|++++|||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.
T Consensus 125 -------~~----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 125 -------VP----VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred -------CC----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhc
Confidence 22 34799999999999999999999999999999999999999999998864 4689999999999995
Q ss_pred h-cCEEEEE
Q psy13234 1138 H-ADEILVM 1145 (1192)
Q Consensus 1138 ~-aDrIlVL 1145 (1192)
. .+|++++
T Consensus 194 ~~~~~~~~~ 202 (204)
T PRK13538 194 SDKVRKLRL 202 (204)
T ss_pred cCCceEEec
Confidence 4 5677776
No 277
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8e-36 Score=359.74 Aligned_cols=217 Identities=28% Similarity=0.419 Sum_probs=177.9
Q ss_pred cccccccceeeecC----------CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q psy13234 896 IEENMEEDQFGFRK----------GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 965 (1192)
Q Consensus 896 I~~~fenVsFsY~~----------~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG 965 (1192)
++ ++|++++|+. ++++++++| +.+.+|+. +||+||||||||||+++|.|+++ ++|+|.+||
T Consensus 276 l~--~~~l~~~~~~~~~~~~~~~~~~~il~~is---l~i~~Ge~---~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g 346 (529)
T PRK15134 276 LD--VEQLQVAFPIRKGILKRTVDHNVVVKNIS---FTLRPGET---LGLVGESGSGKSTTGLALLRLIN-SQGEIWFDG 346 (529)
T ss_pred cc--ccCcEEEeecCccccccccccceeeecce---eEEcCCCE---EEEECCCCCCHHHHHHHHhCcCC-CCcEEEECC
Confidence 55 8999999952 356899999 99999998 99999999999999999999984 899999999
Q ss_pred eecCCCChHh---hcccEEEEcCCC--cccc-ccHHHHHhcccc----CCCHHHHHHHhhhhhhhhhhccCCCCCchhhh
Q psy13234 966 QNIKTVSQAS---LRQAIGVVPQDT--VLFN-NSIKFNIQYARI----NASEEEVKEAATSADIHERILSFPDGYDTQYA 1035 (1192)
Q Consensus 966 ~DI~~i~~~s---LR~~Ig~VPQDp--~LFn-GTIreNI~~G~~----~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~ 1035 (1192)
.++...+... +|++|+||||++ .+|+ .|++||+.++.. ..+.+
T Consensus 347 ~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~--------------------------- 399 (529)
T PRK15134 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA--------------------------- 399 (529)
T ss_pred EEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChH---------------------------
Confidence 9998776543 478899999998 3666 599999986421 00100
Q ss_pred hhcccHHHHHHHHHHcChH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q psy13234 1036 RINASEEEVKEAATSADIH-ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114 (1192)
Q Consensus 1036 ~~~~sdeeI~~AL~~A~Lh-d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq 1114 (1192)
..++++.++++..++. +.. + .....||||||||++||||++.+|++||||||||+||+++.+.+.
T Consensus 400 ---~~~~~~~~~l~~~~l~~~~~-------~----~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 465 (529)
T PRK15134 400 ---QREQQVIAVMEEVGLDPETR-------H----RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465 (529)
T ss_pred ---HHHHHHHHHHHHcCCCHHHH-------h----cCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH
Confidence 0123445555666653 222 2 223479999999999999999999999999999999999999999
Q ss_pred HHHHHHcC--CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1115 SALNRVCA--SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1115 ~aL~~l~~--grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 466 ~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 466 ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516 (529)
T ss_pred HHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence 99998753 689999999999886 5999999999999999999999854
No 278
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=355.69 Aligned_cols=220 Identities=23% Similarity=0.351 Sum_probs=176.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-hcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s-LR~ 978 (1192)
++|++++|.. +++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||.++...+... .|+
T Consensus 7 ~~~l~~~~~~-~~~l~~is---~~i~~Ge~---~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 7 LKGIDKAFPG-VKALSGAA---LNVYPGRV---MALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred EeeeEEEeCC-eEEeeeee---EEEcCCeE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 8899999964 56899999 99999888 9999999999999999999999999999999999997765544 467
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
+|+||||++.+|.. |++||+.++...... + ..++. ...++++.++++..++.+
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~------------------~-~~~~~-----~~~~~~~~~~l~~~~l~~-- 133 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNR------------------F-GRIDW-----KKMYAEADKLLARLNLRF-- 133 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccc------------------c-CccCH-----HHHHHHHHHHHHHcCCCC--
Confidence 89999999998875 999999876310000 0 00000 001223444555555432
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI 1136 (1192)
-.+.++ .+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+
T Consensus 134 -----~~~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~ 204 (501)
T PRK10762 134 -----SSDKLV----GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEI 204 (501)
T ss_pred -----CccCch----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 234443 3699999999999999999999999999999999999999999998864 368999999999988
Q ss_pred H-hcCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1137 I-HADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
. .||+|++|++|++++.|+.+++..
T Consensus 205 ~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 205 FEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 5 599999999999999999887643
No 279
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.1e-36 Score=316.19 Aligned_cols=193 Identities=22% Similarity=0.291 Sum_probs=160.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +++.+|+. +||+||||||||||+++|.|+++|++|+|.+||+++.. ....+|++
T Consensus 4 ~~~l~~~~~~-~~il~~~s---~~i~~Ge~---~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~ 75 (200)
T PRK13540 4 VIELDFDYHD-QPLLQQIS---FHLPAGGL---LHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQ 75 (200)
T ss_pred EEEEEEEeCC-eeEEeeee---EEECCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhh
Confidence 7889999964 56899999 99999999 99999999999999999999999999999999999875 45678899
Q ss_pred EEEEcCCCccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
|+|+||++.++ +.|++||+.++..... .++++.++++..++.+
T Consensus 76 i~~~~q~~~~~~~~tv~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~l~~--- 119 (200)
T PRK13540 76 LCFVGHRSGINPYLTLRENCLYDIHFSP---------------------------------GAVGITELCRLFSLEH--- 119 (200)
T ss_pred eEEeccccccCcCCCHHHHHHHHHhcCc---------------------------------chHHHHHHHHHcCCch---
Confidence 99999999987 5799999987521000 0122334445555433
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~ 1137 (1192)
..+.+++ .||||||||++||||++++|+++||||||++||.++.+.+.+.|++.. +++|+|++||+.+.+.
T Consensus 120 ----~~~~~~~----~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 120 ----LIDYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred ----hhhCChh----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 2333333 699999999999999999999999999999999999999999999863 5799999999999999
Q ss_pred hcCEEEE
Q psy13234 1138 HADEILV 1144 (1192)
Q Consensus 1138 ~aDrIlV 1144 (1192)
+||.-.+
T Consensus 192 ~~d~~~~ 198 (200)
T PRK13540 192 KADYEEY 198 (200)
T ss_pred ccchhhc
Confidence 9996543
No 280
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-36 Score=357.18 Aligned_cols=209 Identities=24% Similarity=0.357 Sum_probs=173.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh-Hhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~-~sLR~ 978 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+|+
T Consensus 7 ~~~l~~~~~~-~~il~~is---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 7 FDGIGKTFPG-VKALDDIS---FDCRAGQV---HALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred EeeeEEEECC-EEEEeeee---EEEeCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 8899999964 56899999 99999998 99999999999999999999999999999999999976543 45688
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccC-----CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARIN-----ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~-----asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
+|+||||++.+|++ |++||+.++... .+.++ .++++.++++..+
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~ 129 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRL------------------------------LNYEAREQLEHLG 129 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHH------------------------------HHHHHHHHHHHcC
Confidence 99999999999885 999999876310 00111 1234455566655
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEec
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAH 1131 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAH 1131 (1192)
+.+ -.+.. ...||||||||++||||++++|++||||||||+||+++.+.+.+.|++.. +++|+|+|||
T Consensus 130 l~~-------~~~~~----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitH 198 (501)
T PRK11288 130 VDI-------DPDTP----LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198 (501)
T ss_pred CCC-------CcCCc----hhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 431 22333 34799999999999999999999999999999999999999999998874 4689999999
Q ss_pred ChhHHHh-cCEEEEEeCCEEEEEcCH
Q psy13234 1132 RLSTIIH-ADEILVMHAGEIVERGRH 1156 (1192)
Q Consensus 1132 RLSTI~~-aDrIlVLe~G~IvE~Gth 1156 (1192)
+++.+.. ||+|++|++|++++.++.
T Consensus 199 d~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 199 RMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9998854 999999999999987653
No 281
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=362.69 Aligned_cols=221 Identities=28% Similarity=0.361 Sum_probs=177.4
Q ss_pred cccccccceeeecC---CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC---
Q psy13234 896 IEENMEEDQFGFRK---GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--- 969 (1192)
Q Consensus 896 I~~~fenVsFsY~~---~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~--- 969 (1192)
++ ++|++++|.. +.++++++| |.+.+|+. +||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 13 l~--v~~l~~~y~~~~~~~~~l~~is---~~v~~Ge~---~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~ 84 (623)
T PRK10261 13 LA--VENLNIAFMQEQQKIAAVRNLS---FSLQRGET---LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84 (623)
T ss_pred EE--EeceEEEecCCCCceeEEEeeE---EEECCCCE---EEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccc
Confidence 55 8999999963 246899999 99999888 9999999999999999999999999999999998552
Q ss_pred -------CCChH---hhc-ccEEEEcCCC--cccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCch
Q psy13234 970 -------TVSQA---SLR-QAIGVVPQDT--VLFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDT 1032 (1192)
Q Consensus 970 -------~i~~~---sLR-~~Ig~VPQDp--~LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~ 1032 (1192)
+.+.. .+| ++||||+|+| .+++ -||+|||.++.. ..+.++
T Consensus 85 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~----------------------- 141 (623)
T PRK10261 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREE----------------------- 141 (623)
T ss_pred ccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHH-----------------------
Confidence 22322 333 5899999998 5776 599999986521 111111
Q ss_pred hhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH
Q psy13234 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112 (1192)
Q Consensus 1033 ~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~ 1112 (1192)
.++++.++|+..++.+. +........+||||||||++|||||+.+|++|||||||++||+.+.+.
T Consensus 142 -------~~~~~~~~l~~~gL~~~--------~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~ 206 (623)
T PRK10261 142 -------AMVEAKRMLDQVRIPEA--------QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQ 206 (623)
T ss_pred -------HHHHHHHHHHHCCCCCh--------hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHH
Confidence 12445566677666320 111223345799999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC--CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1113 IQSALNRVCA--SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1113 Iq~aL~~l~~--grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+.+.|+++.+ ++|+|+|||+++.+. -||+|++|++|+|++.|++++++..
T Consensus 207 l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 207 ILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhcC
Confidence 9999998753 799999999999885 5999999999999999999998754
No 282
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.7e-35 Score=355.14 Aligned_cols=219 Identities=26% Similarity=0.392 Sum_probs=177.2
Q ss_pred cccceeeecC---CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCC
Q psy13234 900 MEEDQFGFRK---GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTV 971 (1192)
Q Consensus 900 fenVsFsY~~---~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~~i 971 (1192)
++|++++|+. ++++++++| +.+.+|+. +||+||||||||||+++|.|+++| ++|+|.+||+++...
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~is---l~i~~Ge~---~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVS---LQIEAGET---LALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred EeceEEEecCCCCceeeeeceE---EEEeCCCE---EEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 8899999964 257899999 99999888 999999999999999999999997 799999999999887
Q ss_pred ChHh---hc-ccEEEEcCCCc--ccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccH
Q psy13234 972 SQAS---LR-QAIGVVPQDTV--LFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASE 1041 (1192)
Q Consensus 972 ~~~s---LR-~~Ig~VPQDp~--LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sd 1041 (1192)
+..+ .| ++||||||++. +++ .|+++|+.+... ..+.++ .+
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~ 131 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREA------------------------------AR 131 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHH------------------------------HH
Confidence 6543 33 58999999985 443 589999864210 011111 13
Q ss_pred HHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q psy13234 1042 EEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC 1121 (1192)
Q Consensus 1042 eeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~ 1121 (1192)
+++.++++..++.+.... .|. ...+||||||||++||||++.+|++||||||||+||+++.+.+.+.|+++.
T Consensus 132 ~~~~~~l~~~gl~~~~~~----~~~----~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~ 203 (529)
T PRK15134 132 GEILNCLDRVGIRQAAKR----LTD----YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQ 203 (529)
T ss_pred HHHHHHHHHCCCCChHHH----Hhh----CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHH
Confidence 445566677766431100 122 344799999999999999999999999999999999999999999998874
Q ss_pred --CCceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1122 --ASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1122 --~grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
.++|+|+|||+++.+. .||+|++|++|++++.|++++++..
T Consensus 204 ~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 247 (529)
T PRK15134 204 QELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSA 247 (529)
T ss_pred HhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhC
Confidence 3799999999999876 5999999999999999999998754
No 283
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2e-35 Score=353.04 Aligned_cols=209 Identities=21% Similarity=0.255 Sum_probs=176.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +++.+|+. +||+||||||||||+|+|.|+.+|++|+|.++|.++...+...+|+.
T Consensus 6 ~~~l~~~~~~-~~il~~vs---l~i~~Ge~---~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 6 ISQGTFRLSD-TKTLQLPS---LTLNAGDS---WAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred EEeEEEEcCC-eeecccce---EEEcCCCE---EEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHH
Confidence 8899999964 45899999 99999998 99999999999999999999999999999999999887777778888
Q ss_pred EEEEcCCCcc---------ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 980 IGVVPQDTVL---------FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 980 Ig~VPQDp~L---------FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
++|+||++.+ +.-|+++|+.++. . .++++.++++.
T Consensus 79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 122 (490)
T PRK10938 79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--K----------------------------------DPARCEQLAQQ 122 (490)
T ss_pred hceeccCcchhhcccchhhccccHHHhcccch--h----------------------------------HHHHHHHHHHH
Confidence 9999998753 2457888875431 0 12234445566
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEE
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIV 1129 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvI 1129 (1192)
.++.+.. +.+ ...||||||||++||||++.+|++|+||||||+||+++.+.+.+.|+++.+ ++|+|+|
T Consensus 123 ~~l~~~~-------~~~----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~ 191 (490)
T PRK10938 123 FGITALL-------DRR----FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191 (490)
T ss_pred cCCHhhh-------hCC----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 6665432 223 347999999999999999999999999999999999999999999988754 6899999
Q ss_pred ecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1130 AHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1130 AHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
||+++.+.+ ||+|++|++|++++.|+.+++.+.
T Consensus 192 tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 192 LNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred eCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 999998865 899999999999999999998754
No 284
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=360.80 Aligned_cols=214 Identities=26% Similarity=0.401 Sum_probs=182.6
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL 976 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL 976 (1192)
++|++++|+.+ +++++++| +++.+|+. ++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.+++
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGIS---LDIYAGEM---VAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHH
Confidence 89999999642 46899999 99999999 99999999999999999999999999999999999999987764
Q ss_pred ----cccEEEEcCCCcccc-ccHHHHHhccccCC--CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 977 ----RQAIGVVPQDTVLFN-NSIKFNIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 977 ----R~~Ig~VPQDp~LFn-GTIreNI~~G~~~a--sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
|+.++|+||++.+|+ .|+.||+.++.... +.+ ..++++.+.++
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~------------------------------~~~~~~~~~l~ 130 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERK------------------------------QRLLRAQELLQ 130 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHH------------------------------HHHHHHHHHHH
Confidence 678999999999997 59999998642110 000 11233445556
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTII 1128 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIv 1128 (1192)
..++.+.+. ....+||||||||++||||++++|+++||||||++||.++.+.+.+.|+++. +++|+|+
T Consensus 131 ~lgl~~~~~-----------~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tili 199 (648)
T PRK10535 131 RLGLEDRVE-----------YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVII 199 (648)
T ss_pred HCCChhhhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 666655433 3345899999999999999999999999999999999999999999999875 4799999
Q ss_pred EecChhHHHhcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1129 VAHRLSTIIHADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1129 IAHRLSTI~~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
|||+++.+..||++++|++|++++.|+.+|..
T Consensus 200 vsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 200 VTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred ECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999876
No 285
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.1e-35 Score=312.70 Aligned_cols=193 Identities=18% Similarity=0.219 Sum_probs=159.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+++.|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++...+ .+.+++
T Consensus 3 ~~~l~~~~~~-~~~l~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~ 74 (198)
T TIGR01189 3 ARNLACSRGE-RMLFEGLS---FTLNAGEA---LQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRN 74 (198)
T ss_pred EEEEEEEECC-EEEEeeee---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhh
Confidence 6788888864 46889999 99999998 9999999999999999999999999999999999998765 467889
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|+||++.+|+ .|++||+.+......+ .++++.++++..++.+..
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~--------------------------------~~~~~~~~l~~~~l~~~~- 121 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAIHGG--------------------------------AQRTIEDALAAVGLTGFE- 121 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHHcCC--------------------------------cHHHHHHHHHHcCCHHHh-
Confidence 999999999987 6999999764311110 022345556777877654
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l-~~grTvIvIAHRLSTI~ 1137 (1192)
++.+ ..||||||||++||||++++|++++||||||+||.++.+.+.+.|++. .+++|+|++||+...+.
T Consensus 122 ------~~~~----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 122 ------DLPA----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred ------cCCh----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 2332 479999999999999999999999999999999999999999999886 45799999999986543
Q ss_pred hcCEEEE
Q psy13234 1138 HADEILV 1144 (1192)
Q Consensus 1138 ~aDrIlV 1144 (1192)
+|+.+.
T Consensus 192 -~~~~~~ 197 (198)
T TIGR01189 192 -EARELR 197 (198)
T ss_pred -ceEEee
Confidence 355543
No 286
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.7e-35 Score=351.54 Aligned_cols=219 Identities=22% Similarity=0.284 Sum_probs=175.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCeecCCCChHh-h
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV--ESGDIFIDNQNIKTVSQAS-L 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp--~sGsI~IDG~DI~~i~~~s-L 976 (1192)
++|++++|+. +++++++| +.+.+|+. +||+||||||||||+++|.|+++| ++|+|.+||+++...+... .
T Consensus 4 i~~l~~~~~~-~~il~~is---l~i~~Ge~---~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (500)
T TIGR02633 4 MKGIVKTFGG-VKALDGID---LEVRPGEC---VGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76 (500)
T ss_pred EEeEEEEeCC-eEeecceE---EEEeCCcE---EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 7889999964 56899999 99999998 999999999999999999999997 7999999999998877544 4
Q ss_pred cccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 977 RQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
|++|+||||++.+|+. |++||+.++...... ...++. +..++++.++++..++.+
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-------------------~~~~~~-----~~~~~~~~~~l~~~~l~~ 132 (500)
T TIGR02633 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLP-------------------GGRMAY-----NAMYLRAKNLLRELQLDA 132 (500)
T ss_pred hCCEEEEeeccccCCCCcHHHHHHhhcccccc-------------------ccccCH-----HHHHHHHHHHHHHcCCCC
Confidence 6789999999988875 999999875310000 000000 001233445555555422
Q ss_pred HHhcCCCCC-cccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCh
Q psy13234 1056 RILSFPDGY-DTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1056 ~I~~LP~Gy-DT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRL 1133 (1192)
.+ +.++ ..||||||||++||||++++|++||||||||+||+++.+.+.+.|+++. +++|+|+|||++
T Consensus 133 -------~~~~~~~----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~ 201 (500)
T TIGR02633 133 -------DNVTRPV----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL 201 (500)
T ss_pred -------CcccCch----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 11 2333 3699999999999999999999999999999999999999999998864 468999999999
Q ss_pred hHHHh-cCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1134 STIIH-ADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1134 STI~~-aDrIlVLe~G~IvE~GtheELL 1160 (1192)
+.+.. ||+|++|++|++++.|+.++..
T Consensus 202 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 202 NEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 98865 9999999999999999877653
No 287
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=323.35 Aligned_cols=202 Identities=34% Similarity=0.519 Sum_probs=176.8
Q ss_pred cccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhc----ccEEEEcCCCcc
Q psy13234 914 RDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR----QAIGVVPQDTVL 989 (1192)
Q Consensus 914 L~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR----~~Ig~VPQDp~L 989 (1192)
.+++| +.+..|+- ..|.|-||||||||+|++-|+++|++|+|++||.|+..++.++|| ++++.|.|.--|
T Consensus 44 v~~~s---l~v~~GeI---fViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 44 VNDAS---LDVEEGEI---FVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred eccce---eeecCCeE---EEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 35566 78888877 999999999999999999999999999999999999999987764 679999999999
Q ss_pred cc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcc
Q psy13234 990 FN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDT 1066 (1192)
Q Consensus 990 Fn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT 1066 (1192)
|+ .||.||..||-. ..+.+|= ++...++|+.+|++++-.+.|+
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~er------------------------------~~~a~~~l~~VgL~~~~~~yp~---- 163 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKAER------------------------------EERALEALELVGLEGYADKYPN---- 163 (386)
T ss_pred ccchhHhhhhhcceeecCCCHHHH------------------------------HHHHHHHHHHcCchhhhhcCcc----
Confidence 98 799999999853 2333332 3444677899999988777663
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhH-HHhcCEEE
Q psy13234 1067 QVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST-IIHADEIL 1143 (1192)
Q Consensus 1067 ~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST-I~~aDrIl 1143 (1192)
.||||.|||++|||||..||+||++|||.|||||--...+|+-|.++.+ +||+|+|||+|.. ++-.|||.
T Consensus 164 -------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 164 -------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred -------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE
Confidence 6999999999999999999999999999999999999999999876644 5999999999985 67799999
Q ss_pred EEeCCEEEEEcCHHHHHhc
Q psy13234 1144 VMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1144 VLe~G~IvE~GtheELL~~ 1162 (1192)
.|+||+|++.||++|++.+
T Consensus 237 imkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 237 IMKDGEIVQVGTPEEILLN 255 (386)
T ss_pred EecCCeEEEeCCHHHHHcC
Confidence 9999999999999999965
No 288
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.7e-35 Score=344.64 Aligned_cols=230 Identities=28% Similarity=0.367 Sum_probs=182.7
Q ss_pred cccceeeecCC----------CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCee--
Q psy13234 900 MEEDQFGFRKG----------KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN-- 967 (1192)
Q Consensus 900 fenVsFsY~~~----------~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~D-- 967 (1192)
.+|++..|... ..+.+++| |.+.+|++ +||||+||||||||.|+|+|+.+|++|+|.++|.|
T Consensus 283 V~~l~k~y~~~~~~~~~~~~~~~Av~~VS---f~l~~GE~---lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVS---FDLREGET---LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred eeeeeeeeccccccccccccceeeeeeee---eEecCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 78888888731 24577888 99999999 99999999999999999999999999999999987
Q ss_pred cCCCChHhhcccEEEEcCCCccc--c-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 968 IKTVSQASLRQAIGVVPQDTVLF--N-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 968 I~~i~~~sLR~~Ig~VPQDp~LF--n-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
++.-+..++|+++-+|.|||+-. + .||+++|.-. + .+|. +.. ....++.+
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ep------------L---~~~~-----~~~-------~~~~~~rv 409 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP------------L---RIHG-----GGS-------GAERRARV 409 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhH------------H---hhhc-----ccc-------hHHHHHHH
Confidence 33333556889999999999833 2 6898888511 0 0000 000 01123456
Q ss_pred HHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--
Q psy13234 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-- 1122 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-- 1122 (1192)
.+.++..++.+.+ ....-..||||||||+||||||..+|+++|+|||||+||.-+.+.|.+.|+++.+
T Consensus 410 ~~ll~~VgL~~~~----------l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~ 479 (539)
T COG1123 410 AELLELVGLPPEF----------LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL 479 (539)
T ss_pred HHHHHHcCCCHHH----------HhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh
Confidence 6667777776421 2223457999999999999999999999999999999999999999999987765
Q ss_pred CceEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHHHHH
Q psy13234 1123 SRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER-NGVYASMWIQ 1172 (1192)
Q Consensus 1123 grTvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L~~~ 1172 (1192)
|-|.|+|||+++.++. ||||.||++|+|||.|+.+++.+. ...|.+....
T Consensus 480 g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 480 GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred CCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 4899999999999975 999999999999999999999876 5778776643
No 289
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.5e-35 Score=314.64 Aligned_cols=200 Identities=25% Similarity=0.321 Sum_probs=160.2
Q ss_pred cccceeeecC------CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC--Ce--ecC
Q psy13234 900 MEEDQFGFRK------GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFID--NQ--NIK 969 (1192)
Q Consensus 900 fenVsFsY~~------~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~ID--G~--DI~ 969 (1192)
++|++++|+. ++++++++| +.+.+|+. ++|+|+||||||||+++|+|+++|++|+|.+| |. ++.
T Consensus 4 ~~~l~~~~~~~~~~~~~~~il~~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 4 VEDLSKTFTLHQQGGVRLPVLKNVS---LTVNAGEC---VALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA 77 (224)
T ss_pred EEeeEEEeecccCCCcceEEEecce---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchh
Confidence 7889999963 146899999 99999998 99999999999999999999999999999998 43 666
Q ss_pred CCChHh---h-cccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHH
Q psy13234 970 TVSQAS---L-RQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042 (1192)
Q Consensus 970 ~i~~~s---L-R~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sde 1042 (1192)
.++... + +++++|+||++.+|+. |++|||.+... ..+.++ .++
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~------------------------------~~~ 127 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREA------------------------------ARA 127 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHH------------------------------HHH
Confidence 666543 3 4679999999998874 99999975310 111111 123
Q ss_pred HHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-
Q psy13234 1043 EVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC- 1121 (1192)
Q Consensus 1043 eI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~- 1121 (1192)
++.++++..++.+... + ..+..||||||||++||||++++|+++||||||++||+++.+.+.+.|++..
T Consensus 128 ~~~~~l~~~~l~~~~~------~----~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 197 (224)
T TIGR02324 128 RARELLARLNIPERLW------H----LPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA 197 (224)
T ss_pred HHHHHHHHcCCchhhh------h----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 4445556666543221 2 2355799999999999999999999999999999999999999999999875
Q ss_pred CCceEEEEecChhHHH-hcCEEEEE
Q psy13234 1122 ASRTTIIVAHRLSTII-HADEILVM 1145 (1192)
Q Consensus 1122 ~grTvIvIAHRLSTI~-~aDrIlVL 1145 (1192)
+++|+|+|||+++.+. .||+|+.+
T Consensus 198 ~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 198 RGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred cCCEEEEEeCCHHHHHHhcceeEec
Confidence 3789999999999885 69999876
No 290
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.1e-35 Score=353.87 Aligned_cols=220 Identities=25% Similarity=0.380 Sum_probs=174.1
Q ss_pred cccceeeecC----CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC-Cee---cCCC
Q psy13234 900 MEEDQFGFRK----GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFID-NQN---IKTV 971 (1192)
Q Consensus 900 fenVsFsY~~----~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~ID-G~D---I~~i 971 (1192)
++|++++|+. ++++++++| |.+.+|+. +||+||||||||||+++|.|+.+|++|+|.++ |.+ +...
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is---~~i~~Ge~---~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVS---LEVKEGEI---FGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 8899999953 246899999 99999998 99999999999999999999999999999996 643 3433
Q ss_pred C---hHhhcccEEEEcCCCcccc-ccHHHHHhcccc-CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHH
Q psy13234 972 S---QASLRQAIGVVPQDTVLFN-NSIKFNIQYARI-NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046 (1192)
Q Consensus 972 ~---~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~-~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~ 1046 (1192)
+ ...+|++|+||||++.+|+ -|++||+.++.. ..+.+ ..++++.+
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~------------------------------~~~~~~~~ 405 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE------------------------------LARMKAVI 405 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHH------------------------------HHHHHHHH
Confidence 2 2346788999999998887 499999975310 00000 01233445
Q ss_pred HHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--Cc
Q psy13234 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SR 1124 (1192)
Q Consensus 1047 AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--gr 1124 (1192)
+++..++.+.- .++-.+.+ ...||||||||++||||++.+|+||||||||++||+++.+.+.+.|+++.+ ++
T Consensus 406 ~l~~~~l~~~~--~~~~~~~~----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 479 (520)
T TIGR03269 406 TLKMVGFDEEK--AEEILDKY----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ 479 (520)
T ss_pred HHHhCCCCCcc--chhhhhCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 55666653200 00012333 346999999999999999999999999999999999999999999988753 68
Q ss_pred eEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1125 TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1125 TvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 480 tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 480 TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999998864 99999999999999999998764
No 291
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-35 Score=312.68 Aligned_cols=194 Identities=20% Similarity=0.230 Sum_probs=161.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+++.|+. +.+++++| +.+.+|+. +||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|++
T Consensus 5 ~~~l~~~~~~-~~~l~~is---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~ 74 (207)
T PRK13539 5 GEDLACVRGG-RVLFSGLS---FTLAAGEA---LVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEA 74 (207)
T ss_pred EEeEEEEECC-eEEEeceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhh
Confidence 7899999964 46899999 99999998 99999999999999999999999999999999998753 2 28889
Q ss_pred EEEEcCCCccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|++|++.++ +.|++||+.+..... ...++++.++++..++.+...
T Consensus 75 ~~~~~~~~~~~~~~tv~~~l~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~ 122 (207)
T PRK13539 75 CHYLGHRNAMKPALTVAENLEFWAAFL--------------------------------GGEELDIAAALEAVGLAPLAH 122 (207)
T ss_pred cEEecCCCcCCCCCcHHHHHHHHHHhc--------------------------------CCcHHHHHHHHHHcCCHHHHc
Confidence 99999988775 589999997642100 011233555668888865432
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l-~~grTvIvIAHRLSTI~ 1137 (1192)
. ++ ..||||||||++||||++++|+++||||||++||+++.+.+.+.|++. .+++|+|++||+++.+.
T Consensus 123 -~------~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 191 (207)
T PRK13539 123 -L------PF----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLP 191 (207)
T ss_pred -C------Ch----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhc
Confidence 2 22 369999999999999999999999999999999999999999999875 35799999999999998
Q ss_pred hcCEEEEEeC
Q psy13234 1138 HADEILVMHA 1147 (1192)
Q Consensus 1138 ~aDrIlVLe~ 1147 (1192)
. |+++.++.
T Consensus 192 ~-~~~~~~~~ 200 (207)
T PRK13539 192 G-ARELDLGP 200 (207)
T ss_pred c-CcEEeecC
Confidence 8 99988854
No 292
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=301.95 Aligned_cols=198 Identities=27% Similarity=0.465 Sum_probs=169.0
Q ss_pred CCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCc
Q psy13234 909 KGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV 988 (1192)
Q Consensus 909 ~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~ 988 (1192)
.+.++++++| +.+.+|+. +||+||||||||||+|.++-+..|++|+++..|+|+++++++.+|++|+|+-|.|.
T Consensus 14 ~~a~il~~is---l~v~~Ge~---iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa 87 (223)
T COG4619 14 GDAKILNNIS---LSVRAGEF---IAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87 (223)
T ss_pred CCCeeeccee---eeecCCce---EEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence 3678999999 99999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccc
Q psy13234 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQV 1068 (1192)
Q Consensus 989 LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~V 1068 (1192)
||.+||.||+-|-- + +| .+.| +.+...+-|+++++.+.+ +
T Consensus 88 Lfg~tVeDNlifP~---------~------~r---~rr~------------dr~aa~~llar~~l~~~~----------L 127 (223)
T COG4619 88 LFGDTVEDNLIFPW---------Q------IR---NRRP------------DRAAALDLLARFALPDSI----------L 127 (223)
T ss_pred ccccchhhccccch---------H------Hh---ccCC------------ChHHHHHHHHHcCCchhh----------h
Confidence 99999999997631 0 00 0111 122333444555554443 4
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChhH-HHhcCEEEEE
Q psy13234 1069 GERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLST-IIHADEILVM 1145 (1192)
Q Consensus 1069 GErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLST-I~~aDrIlVL 1145 (1192)
..+-.+||||||||+||+|-|---|+||+|||+|||||..+.+.|.+.|.++. +++.++.|||+... +++||+++-+
T Consensus 128 ~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl 207 (223)
T COG4619 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITL 207 (223)
T ss_pred cchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEe
Confidence 45567899999999999999999999999999999999999999999999887 45899999999987 9999999999
Q ss_pred eCCEEEE
Q psy13234 1146 HAGEIVE 1152 (1192)
Q Consensus 1146 e~G~IvE 1152 (1192)
..|++-|
T Consensus 208 ~~G~~~~ 214 (223)
T COG4619 208 QPGHAGE 214 (223)
T ss_pred ccCcccc
Confidence 9987644
No 293
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.7e-35 Score=351.59 Aligned_cols=215 Identities=27% Similarity=0.402 Sum_probs=173.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEEC-------------
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY--DVESGDIFID------------- 964 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRly--dp~sGsI~ID------------- 964 (1192)
++|++++|. ++++++++| +.+.+|+. +||+||||||||||+++|.|+. +|++|+|.++
T Consensus 3 ~~~l~~~~~-~~~~l~~is---~~i~~Ge~---~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~ 75 (520)
T TIGR03269 3 VKNLTKKFD-GKEVLKNIS---FTIEEGEV---LGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75 (520)
T ss_pred EEEEEEEEC-CeEeeecee---EEEcCCCE---EEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccc
Confidence 788999995 357899999 99999988 9999999999999999999996 7999999997
Q ss_pred ----------CeecC-------CCC---hHhhcccEEEEcCC-Ccccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhh
Q psy13234 965 ----------NQNIK-------TVS---QASLRQAIGVVPQD-TVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIH 1020 (1192)
Q Consensus 965 ----------G~DI~-------~i~---~~sLR~~Ig~VPQD-p~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh 1020 (1192)
|.++. ..+ ...+|+.++||||+ +.+|+ .|++||+.++.. ..+.++
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~----------- 144 (520)
T TIGR03269 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKE----------- 144 (520)
T ss_pred cccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHH-----------
Confidence 33331 111 23467889999998 67776 599999986421 011111
Q ss_pred hhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q psy13234 1021 ERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE 1100 (1192)
Q Consensus 1021 ~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDE 1100 (1192)
.++++.++++..++.+... .....||||||||++||||++.+|++|||||
T Consensus 145 -------------------~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDE 194 (520)
T TIGR03269 145 -------------------AVGRAVDLIEMVQLSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADE 194 (520)
T ss_pred -------------------HHHHHHHHHHHcCChhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeC
Confidence 1234556667777654432 2235799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1101 ATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1101 ATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|||+||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 195 Pt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 195 PTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999999999999999988743 689999999999986 5999999999999999999998753
No 294
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=321.62 Aligned_cols=208 Identities=19% Similarity=0.258 Sum_probs=169.1
Q ss_pred eeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEc
Q psy13234 905 FGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVP 984 (1192)
Q Consensus 905 FsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VP 984 (1192)
+.++..+++++++| +.+.+|+. +||+||+|||||||+++|+|+++|++|+|.+||. +++++
T Consensus 31 ~~~~~~~~il~~is---~~i~~Ge~---~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~ 91 (264)
T PRK13546 31 KHKNKTFFALDDIS---LKAYEGDV---IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIA 91 (264)
T ss_pred hccCCceEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEe
Confidence 34445567888998 99999999 9999999999999999999999999999999995 56788
Q ss_pred CCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCC
Q psy13234 985 QDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFP 1061 (1192)
Q Consensus 985 QDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP 1061 (1192)
|++.+++ .|+++|++++.. ..++++..+ .+.++++..++.+.+.
T Consensus 92 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~------------------------------~~~~~l~~~~l~~~~~--- 138 (264)
T PRK13546 92 ISAGLSGQLTGIENIEFKMLCMGFKRKEIKA------------------------------MTPKIIEFSELGEFIY--- 138 (264)
T ss_pred cccCCCCCCcHHHHHHHHHHHcCCCHHHHHH------------------------------HHHHHHHHcCCchhhc---
Confidence 8887664 699999986421 122332222 2234445555554432
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHh-c
Q psy13234 1062 DGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIH-A 1139 (1192)
Q Consensus 1062 ~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~-a 1139 (1192)
.....||||||||++||||++++|+||||||||++||+++.+.+.+.|.+.. +++|+|+|||+++.+.. |
T Consensus 139 --------~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~ 210 (264)
T PRK13546 139 --------QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFC 210 (264)
T ss_pred --------CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHc
Confidence 2355799999999999999999999999999999999999999999998764 47999999999998864 9
Q ss_pred CEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHH
Q psy13234 1140 DEILVMHAGEIVERGRHEELLERNGVYASMWIQ 1172 (1192)
Q Consensus 1140 DrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~ 1172 (1192)
|+|++|++|++++.|+++++.++.+.|-+....
T Consensus 211 d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 211 TKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred CEEEEEECCEEEEeCCHHHHHHHhHHHHHHHHh
Confidence 999999999999999999999876666655544
No 295
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.8e-35 Score=300.40 Aligned_cols=157 Identities=29% Similarity=0.492 Sum_probs=143.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh-Hhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~-~sLR~ 978 (1192)
++|++++|+. ++++++++ +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++...+. +..|+
T Consensus 3 ~~~l~~~~~~-~~vl~~i~---~~i~~Ge~---~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~ 75 (163)
T cd03216 3 LRGITKRFGG-VKALDGVS---LSVRRGEV---HALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRA 75 (163)
T ss_pred EEEEEEEECC-eEEEeeeE---EEEeCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhc
Confidence 7899999964 46899999 99999999 99999999999999999999999999999999999988765 34566
Q ss_pred cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
+++|+||
T Consensus 76 ~i~~~~q------------------------------------------------------------------------- 82 (163)
T cd03216 76 GIAMVYQ------------------------------------------------------------------------- 82 (163)
T ss_pred CeEEEEe-------------------------------------------------------------------------
Confidence 7777766
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~ 1137 (1192)
||||||||++||||++++|++++|||||++||.++.+.+.+.|++.. +++|+|++||++..+.
T Consensus 83 ----------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 83 ----------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred ----------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999998874 4799999999999775
Q ss_pred -hcCEEEEEeCCEEEE
Q psy13234 1138 -HADEILVMHAGEIVE 1152 (1192)
Q Consensus 1138 -~aDrIlVLe~G~IvE 1152 (1192)
.||++++|++|++++
T Consensus 147 ~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 147 EIADRVTVLRDGRVVG 162 (163)
T ss_pred HhCCEEEEEECCEEEe
Confidence 599999999999975
No 296
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-35 Score=304.62 Aligned_cols=216 Identities=28% Similarity=0.457 Sum_probs=181.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
..+++.+|++....++++| |....|+. +||-||+||||||++|.|..+..|++|+|.|||.|....+ ...|++
T Consensus 4 v~~l~K~y~~~v~AvrdVS---F~ae~Gei---~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~ 76 (245)
T COG4555 4 VTDLTKSYGSKVQAVRDVS---FEAEEGEI---TGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRK 76 (245)
T ss_pred eeehhhhccCHHhhhhhee---EEeccceE---EEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhh
Confidence 5667778877555788898 99999888 9999999999999999999999999999999999998854 678999
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
||+++-+.-|+.. |.+|||.|... +.+++|+ +.++.+..+.-++.|.
T Consensus 77 IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~------------------------------kari~~l~k~l~l~~~ 126 (245)
T COG4555 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEI------------------------------KARIAELSKRLQLLEY 126 (245)
T ss_pred cceecCCcChhhhhhHHHHHHHHHHHhhhhhhHH------------------------------HHHHHHHHHHhChHHH
Confidence 9999988888874 99999986421 1222222 1222333344455444
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLST 1135 (1192)
.|+.+| +||-|+|||++||||+.+||+|+|||||||+||--+.+.+++-+.+... ||++|+-||-++.
T Consensus 127 -------~~rRv~----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~E 195 (245)
T COG4555 127 -------LDRRVG----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQE 195 (245)
T ss_pred -------HHHHHh----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHH
Confidence 355666 5999999999999999999999999999999999999999999998876 7999999999999
Q ss_pred HH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1136 II-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1136 I~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
++ -||+|+++++|+++..|+.+++.++.
T Consensus 196 vealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 196 VEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred HHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 98 79999999999999999999998763
No 297
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-34 Score=310.81 Aligned_cols=194 Identities=22% Similarity=0.260 Sum_probs=160.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+|+||||||||+++|.|+++|++|+|.+||+++... ..++.
T Consensus 14 ~~~l~~~~~~-~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~ 83 (214)
T PRK13543 14 AHALAFSRNE-EPVFGPLD---FHVDAGEA---LLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRF 83 (214)
T ss_pred EeeEEEecCC-ceeeecce---EEECCCCE---EEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhc
Confidence 8899999864 46899999 99999888 999999999999999999999999999999999998753 34678
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
++|+||++.+|++ |++||+.++.. +.+ .++.+.++++..++.
T Consensus 84 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---------------------------------~~~~~~~~l~~~~l~-- 128 (214)
T PRK13543 84 MAYLGHLPGLKADLSTLENLHFLCGLHGRR---------------------------------AKQMPGSALAIVGLA-- 128 (214)
T ss_pred eEEeecCcccccCCcHHHHHHHHHHhcCCc---------------------------------HHHHHHHHHHHcCCh--
Confidence 9999999999987 99999976421 000 112233444555443
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLST 1135 (1192)
+.+++.+ ..||||||||++||||++++|++++|||||++||.++.+.+.+.|++.. +++|+|++||+++.
T Consensus 129 -----~~~~~~~----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (214)
T PRK13543 129 -----GYEDTLV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA 199 (214)
T ss_pred -----hhccCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 3344444 4799999999999999999999999999999999999999999998754 46999999999998
Q ss_pred HH-hcCEEEEEeC
Q psy13234 1136 II-HADEILVMHA 1147 (1192)
Q Consensus 1136 I~-~aDrIlVLe~ 1147 (1192)
+. -||+|++++.
T Consensus 200 ~~~~~~~i~~l~~ 212 (214)
T PRK13543 200 APPVRTRMLTLEA 212 (214)
T ss_pred hhhhcceEEEEee
Confidence 85 6899999874
No 298
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.9e-34 Score=315.20 Aligned_cols=199 Identities=24% Similarity=0.286 Sum_probs=157.4
Q ss_pred eeecCCCCccccccccceeecCC--cccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEE
Q psy13234 905 FGFRKGKGTRDAIGCLRMIALES--QLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGV 982 (1192)
Q Consensus 905 FsY~~~~~vL~~ISvL~~~i~~G--e~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~ 982 (1192)
|.|++..+.+.+++ +.+.+| +.||.++|+||||||||||+++|.|+++|++|+|.+||. .|+|
T Consensus 1 ~~y~~~~~~~~~~~---l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~ 65 (246)
T cd03237 1 YTYPTMKKTLGEFT---LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSY 65 (246)
T ss_pred CCCcccccccCcEE---EEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEE
Confidence 56766556777777 777654 467779999999999999999999999999999999994 5999
Q ss_pred EcCCCc-cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCC
Q psy13234 983 VPQDTV-LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFP 1061 (1192)
Q Consensus 983 VPQDp~-LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP 1061 (1192)
+||++. .++.|++||+.+......+ .++...++++..++.+..
T Consensus 66 ~~q~~~~~~~~tv~e~l~~~~~~~~~--------------------------------~~~~~~~~l~~l~l~~~~---- 109 (246)
T cd03237 66 KPQYIKADYEGTVRDLLSSITKDFYT--------------------------------HPYFKTEIAKPLQIEQIL---- 109 (246)
T ss_pred ecccccCCCCCCHHHHHHHHhhhccc--------------------------------cHHHHHHHHHHcCCHHHh----
Confidence 999987 5789999999753211000 011122344555554332
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHH-h
Q psy13234 1062 DGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTII-H 1138 (1192)
Q Consensus 1062 ~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~-~ 1138 (1192)
......||||||||++|||||+++|+++||||||++||+++...+.+.|++..+ ++|+|+|||+++.+. .
T Consensus 110 -------~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 110 -------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred -------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 233457999999999999999999999999999999999999999999998753 799999999999987 4
Q ss_pred cCEEEEEeCCEEE--EEcCHHHHHh
Q psy13234 1139 ADEILVMHAGEIV--ERGRHEELLE 1161 (1192)
Q Consensus 1139 aDrIlVLe~G~Iv--E~GtheELL~ 1161 (1192)
||+|++|+++..+ ..++++++..
T Consensus 183 ~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 183 ADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred CCEEEEEcCCCeeEEEeCCchHHHH
Confidence 9999999876544 5677888764
No 299
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-34 Score=380.80 Aligned_cols=216 Identities=22% Similarity=0.364 Sum_probs=179.7
Q ss_pred cccceeeecC---CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCeecCCCCh
Q psy13234 900 MEEDQFGFRK---GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD---VESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 900 fenVsFsY~~---~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd---p~sGsI~IDG~DI~~i~~ 973 (1192)
++|++++|+. ++.+++++| +.+++|+. +||+||||||||||+++|+|..+ |++|+|.+||+++.
T Consensus 762 ~~nl~~~~~~~~~~~~iL~~vs---~~i~~Ge~---~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~---- 831 (1394)
T TIGR00956 762 WRNLTYEVKIKKEKRVILNNVD---GWVKPGTL---TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD---- 831 (1394)
T ss_pred EEeeEEEecCCCCCcEeeeCCE---EEEECCEE---EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----
Confidence 8999998852 457899999 99999998 99999999999999999999998 78899999999985
Q ss_pred HhhcccEEEEcCCCc-cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 974 ASLRQAIGVVPQDTV-LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~-LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
.++|+++|||||++. +++.|++||+.++.. ++.|....+ +..++++.++++..+
T Consensus 832 ~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~--------------------l~~~~~~~~-----~~~~~~v~~~l~~l~ 886 (1394)
T TIGR00956 832 SSFQRSIGYVQQQDLHLPTSTVRESLRFSAY--------------------LRQPKSVSK-----SEKMEYVEEVIKLLE 886 (1394)
T ss_pred hhhhcceeeecccccCCCCCCHHHHHHHHHH--------------------hCCCCCCCH-----HHHHHHHHHHHHHcC
Confidence 357899999999865 566799999987521 001111000 011234566667766
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH-cCCceEEEEe
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQ-IVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVA 1130 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~-ILLLDEATSALD~eTE~~Iq~aL~~l-~~grTvIvIA 1130 (1192)
+.+ -.|+.||+.|.+||||||||++|||||+++|+ ||+||||||+||+.+...|++.|+++ .+|+|+|+++
T Consensus 887 L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~ 959 (1394)
T TIGR00956 887 MES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTI 959 (1394)
T ss_pred Chh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 643 47999999999999999999999999999997 99999999999999999999999987 4579999999
Q ss_pred cChhHH--HhcCEEEEEeCC-EEEEEcCHH
Q psy13234 1131 HRLSTI--IHADEILVMHAG-EIVERGRHE 1157 (1192)
Q Consensus 1131 HRLSTI--~~aDrIlVLe~G-~IvE~Gthe 1157 (1192)
|+++.. ..+|+|++|++| ++++.|+.+
T Consensus 960 H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 960 HQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred cCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999973 679999999997 999999863
No 300
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=346.96 Aligned_cols=222 Identities=23% Similarity=0.367 Sum_probs=173.0
Q ss_pred cccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEECCeecCCCCh-Hh
Q psy13234 900 MEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-VESGDIFIDNQNIKTVSQ-AS 975 (1192)
Q Consensus 900 fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-p~sGsI~IDG~DI~~i~~-~s 975 (1192)
++|+++.|+. ++++++++| +.+.+|+. +||+||||||||||+|+|.|+++ |++|+|.+||+|+...+. +.
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vs---l~i~~Ge~---~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~ 335 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVS---FSLRRGEI---LGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQA 335 (506)
T ss_pred EecCcccccccccccccccee---eEEcCCcE---EEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHH
Confidence 8899998852 456899999 99999999 99999999999999999999999 599999999999875543 45
Q ss_pred hcccEEEEcCCC---cccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 976 LRQAIGVVPQDT---VLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 976 LR~~Ig~VPQDp---~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
.|+.|+||||++ .+|+ -|+.||+.++.... . . ..+ ..+. ....+++.++++..
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~----~---~----------~~~-~~~~-----~~~~~~~~~~l~~~ 392 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR----F---T----------GGS-RIDD-----AAELKTILESIQRL 392 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh----h---c----------cCc-ccCh-----HHHHHHHHHHHHhc
Confidence 678899999996 3554 69999998652100 0 0 000 0000 00122344445555
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEe
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVA 1130 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIA 1130 (1192)
++.+ +-.+.+ ...||||||||++||||++.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+||
T Consensus 393 ~l~~------~~~~~~----~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~s 462 (506)
T PRK13549 393 KVKT------ASPELA----IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462 (506)
T ss_pred CccC------CCcccc----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEEC
Confidence 4420 112333 34799999999999999999999999999999999999999999998764 479999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
|+++.+. .||++++|++|+++..|+.+++.
T Consensus 463 Hd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 463 SELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 9999885 59999999999999999888763
No 301
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.4e-34 Score=311.05 Aligned_cols=196 Identities=24% Similarity=0.285 Sum_probs=155.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
.++.+..|.. +++++++| +.+.+|+. ++|+||+|||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 25 ~~~~~~~~~~-~~il~~vs---~~i~~Ge~---~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~ 92 (224)
T cd03220 25 ILGRKGEVGE-FWALKDVS---FEVPRGER---IGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLG 92 (224)
T ss_pred hhhhhhhcCC-eEEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccc
Confidence 6677777754 56899999 99999999 999999999999999999999999999999999986421 111
Q ss_pred EEEEcCCCccccccHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
.+ +..+.|++||+.++... .+.++ .++++.++++..++.+.
T Consensus 93 ~~------~~~~~tv~enl~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~~~- 135 (224)
T cd03220 93 GG------FNPELTGRENIYLNGRLLGLSRKE------------------------------IDEKIDEIIEFSELGDF- 135 (224)
T ss_pred cc------CCCCCcHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHcCChhh-
Confidence 11 22357999999865321 11111 12234455555555433
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI 1136 (1192)
.++++ ..||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+
T Consensus 136 ------~~~~~----~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~ 205 (224)
T cd03220 136 ------IDLPV----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI 205 (224)
T ss_pred ------hhCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 34444 36999999999999999999999999999999999999999999988754 58999999999988
Q ss_pred H-hcCEEEEEeCCEEEEEc
Q psy13234 1137 I-HADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~IvE~G 1154 (1192)
. .||+|++|++|++++.|
T Consensus 206 ~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 206 KRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHhCCEEEEEECCEEEecC
Confidence 6 59999999999998865
No 302
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-34 Score=307.03 Aligned_cols=188 Identities=21% Similarity=0.296 Sum_probs=155.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +..+ ++| +.+.+|+. ++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ++.
T Consensus 4 ~~~l~~~~~~-~~l~-~vs---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~ 71 (195)
T PRK13541 4 LHQLQFNIEQ-KNLF-DLS---ITFLPSAI---TYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPY 71 (195)
T ss_pred EEEeeEEECC-cEEE-EEE---EEEcCCcE---EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhh
Confidence 7889999954 3444 488 99999888 9999999999999999999999999999999999987643 456
Q ss_pred EEEEcCCCc-cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTV-LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~-LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|+||++. +|+.|++|||.++..... .++++.++++..++.+...
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~---------------------------------~~~~~~~~l~~~~l~~~~~ 118 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIYN---------------------------------SAETLYAAIHYFKLHDLLD 118 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhcc---------------------------------cHHHHHHHHHHcCCHhhhc
Confidence 999999875 577899999987532111 1233444557777655432
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l-~~grTvIvIAHRLSTI~ 1137 (1192)
..+.+||||||||++||||++++|++++|||||++||+++.+.+.+.|++. .+++|+|+|||+++.++
T Consensus 119 -----------~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 119 -----------EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIK 187 (195)
T ss_pred -----------cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccc
Confidence 345689999999999999999999999999999999999999999999753 45799999999999999
Q ss_pred hcCEEE
Q psy13234 1138 HADEIL 1143 (1192)
Q Consensus 1138 ~aDrIl 1143 (1192)
.||-|.
T Consensus 188 ~~~~~~ 193 (195)
T PRK13541 188 SAQILQ 193 (195)
T ss_pred hhheec
Confidence 999763
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-34 Score=338.38 Aligned_cols=212 Identities=22% Similarity=0.300 Sum_probs=172.9
Q ss_pred cccceeeecCC--CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhc
Q psy13234 900 MEEDQFGFRKG--KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~--~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR 977 (1192)
++|++|.|+.+ +++++++| +.+.+|+. +||+||+|||||||+++|+|+++|++|+|.+||.+.
T Consensus 24 lknL~~~~~~~~~~~IL~nVS---fsI~~GEi---vgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--------- 88 (549)
T PRK13545 24 LKDLFFRSKDGEYHYALNNIS---FEVPEGEI---VGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--------- 88 (549)
T ss_pred EEEEEEecCCCccceEEeeeE---EEEeCCCE---EEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---------
Confidence 88899998764 46899999 99999998 999999999999999999999999999999999752
Q ss_pred ccEEEEcCCCcccc-ccHHHHHhccc--cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 978 QAIGVVPQDTVLFN-NSIKFNIQYAR--INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFn-GTIreNI~~G~--~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
++++++.+++ .|++|||.+.. ...++++.. +++.++++..++.
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~------------------------------e~i~elLe~lgL~ 134 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMMGLTKEKIK------------------------------EIIPEIIEFADIG 134 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHH------------------------------HHHHHHHHHcCCh
Confidence 1223334443 59999998642 112222221 2334566777776
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRL 1133 (1192)
+.+.+ ....||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++
T Consensus 135 ~~ld~-----------~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl 203 (549)
T PRK13545 135 KFIYQ-----------PVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203 (549)
T ss_pred hHhhC-----------CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 65433 245799999999999999999999999999999999999999999998874 468999999999
Q ss_pred hHHHh-cCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1134 STIIH-ADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1134 STI~~-aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
+.+.. ||+|++|++|++++.|+++++...-..|.++|.
T Consensus 204 ~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~~~~~ 242 (549)
T PRK13545 204 SQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYN 242 (549)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHHHHHh
Confidence 98865 999999999999999999999987666666664
No 304
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-34 Score=316.83 Aligned_cols=231 Identities=27% Similarity=0.438 Sum_probs=182.4
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-C----CCceEEECCeecCCC
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-V----ESGDIFIDNQNIKTV 971 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-p----~sGsI~IDG~DI~~i 971 (1192)
++|++.+|..+ ..+++|+| |.+.+||. +||||+|||||||+.+.|+|+.+ | .+|+|.+||+|+-++
T Consensus 4 v~nL~v~f~~~~g~v~av~~vs---~~i~~GE~---lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 4 VKNLSVSFPTDAGVVKAVDGVS---FELKKGEI---LGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred EeeeEEEEecCCccEEEEecee---EEEcCCcE---EEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 67888888653 35778888 99999999 99999999999999999999998 3 679999999999999
Q ss_pred ChHhh----cccEEEEcCCCcc-cc--ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 972 SQASL----RQAIGVVPQDTVL-FN--NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 972 ~~~sL----R~~Ig~VPQDp~L-Fn--GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
+.+.+ ++.|++|+|||.- || -||. +++.|+++. |.... . ...-.++.
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig------------~Qi~E~l~~---h~~~~------~-----~~ea~~~a 131 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIG------------DQIAEVLRL---HGKGL------S-----KKEAKERA 131 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHH------------HHHHHHHHH---hhcch------h-----hHHHHHHH
Confidence 98764 4589999999862 22 1222 344454411 11100 0 01124567
Q ss_pred HHHHHHcChHHH---HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q psy13234 1045 KEAATSADIHER---ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC 1121 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~---I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~ 1121 (1192)
.+.|+.+++.+- +.+.| -.||||||||+.||=|+..+|++||-||||+|||..+.++|.+.|+++.
T Consensus 132 ~~~L~~Vgi~~~~~~~~~YP-----------helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~ 200 (316)
T COG0444 132 IELLELVGIPDPERRLKSYP-----------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ 200 (316)
T ss_pred HHHHHHcCCCCHHHHHhhCC-----------cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHH
Confidence 778888888753 33444 4699999999999999999999999999999999999999999998887
Q ss_pred C--CceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHH-HHHHHh
Q psy13234 1122 A--SRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERN-GVYA-SMWIQQ 1173 (1192)
Q Consensus 1122 ~--grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya-~L~~~Q 1173 (1192)
+ +.|+|+|||++..+. -||||.||.+|+|||.|+.+|+.++. ..|. .|++..
T Consensus 201 ~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~ 257 (316)
T COG0444 201 REKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNSL 257 (316)
T ss_pred HhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHHHHhC
Confidence 5 799999999999875 69999999999999999999999753 4454 455443
No 305
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=346.55 Aligned_cols=221 Identities=19% Similarity=0.324 Sum_probs=170.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh-Hhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~-~sLR~ 978 (1192)
++|+++.|. .+++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||.++...+. +.+|+
T Consensus 268 ~~~l~~~~~---~~l~~is---l~i~~Ge~---~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 268 VRNVTSRDR---KKVRDIS---FSVCRGEI---LGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred EeCccccCC---Cccccee---EEEcCCcE---EEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 788887652 3789999 99999998 99999999999999999999999999999999999876543 45778
Q ss_pred cEEEEcCCC---cccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDT---VLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp---~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
+|+||||++ .+|+ -|++||+.++.... ...... .+ +... ....++++.++++..++.
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-~~~~~~------------~~--~~~~----~~~~~~~~~~~l~~~~l~ 399 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLK-DGGYKG------------AM--GLFH----EVDEQRTAENQRELLALK 399 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccc-cccccc------------cc--cccC----hHHHHHHHHHHHHhcCCC
Confidence 999999984 5776 49999998753100 000000 00 0000 000122344555555442
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRL 1133 (1192)
++-.+++++ .||||||||++||||++.+|+|||||||||+||..+.+.+.+.|+++. +++|+|+|||++
T Consensus 400 ------~~~~~~~~~----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 400 ------CHSVNQNIT----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred ------CCCccCccc----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 123455544 599999999999999999999999999999999999999999998764 478999999999
Q ss_pred hHHH-hcCEEEEEeCCEEEEEcCHHH
Q psy13234 1134 STII-HADEILVMHAGEIVERGRHEE 1158 (1192)
Q Consensus 1134 STI~-~aDrIlVLe~G~IvE~GtheE 1158 (1192)
+.+. .||+|++|++|++++.++.++
T Consensus 470 ~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 470 PEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHHhhCCEEEEEECCEEEEEecCcc
Confidence 8774 699999999999999887633
No 306
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.1e-34 Score=376.91 Aligned_cols=218 Identities=25% Similarity=0.411 Sum_probs=186.5
Q ss_pred ccccccccceeeec-CCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh
Q psy13234 895 KIEENMEEDQFGFR-KGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 895 ~I~~~fenVsFsY~-~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~ 973 (1192)
.++ ++|+++.|+ .++++++++| +.+.+|+. ++|+||+|||||||+++|.|+.+|++|+|.++|.|++. +.
T Consensus 928 ~L~--I~nLsK~y~~~~k~aL~~ls---l~I~~Gei---~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~ 998 (2272)
T TIGR01257 928 GVC--VKNLVKIFEPSGRPAVDRLN---ITFYENQI---TAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NL 998 (2272)
T ss_pred eEE--EEeEEEEecCCCceEEEeeE---EEEcCCcE---EEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hH
Confidence 355 899999996 3567899999 99999998 99999999999999999999999999999999999975 56
Q ss_pred HhhcccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
+..|++|||+||++.+|+. |++|||.++.. ..+.++ .++++.+.++.
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~------------------------------~~~~v~~lL~~ 1048 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEE------------------------------AQLEMEAMLED 1048 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHHH
Confidence 7789999999999999975 99999986421 111111 12345556677
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
.++.+.. .....+||||||||++||||++.+|+|++||||||+||+.+.+.+.+.|++..+++|+|++|
T Consensus 1049 vgL~~~~-----------~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltT 1117 (2272)
T TIGR01257 1049 TGLHHKR-----------NEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMST 1117 (2272)
T ss_pred cCCchhh-----------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 6664432 23345799999999999999999999999999999999999999999999988899999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+++.+. .||||++|++|++++.|+.++|.++
T Consensus 1118 Hdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1118 HHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999886 5999999999999999999999875
No 307
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8e-34 Score=334.97 Aligned_cols=228 Identities=27% Similarity=0.396 Sum_probs=183.0
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC----CceEEECCeecCCCC
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE----SGDIFIDNQNIKTVS 972 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~----sGsI~IDG~DI~~i~ 972 (1192)
++|++..|... ..+++|+| |.+.+||. +||||+|||||||+++.|.|+.++. +|+|.+||.|+..++
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vs---f~v~~GE~---lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVS---FEVEPGEI---LGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred EeceEEEEecCCcceeeeecce---EEecCCcE---EEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 77777777542 25789999 99999999 9999999999999999999999988 899999999999999
Q ss_pred hHhh----cccEEEEcCCCc-cccc--cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHH
Q psy13234 973 QASL----RQAIGVVPQDTV-LFNN--SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 973 ~~sL----R~~Ig~VPQDp~-LFnG--TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
.+.. ++.|++|||||. .+|- ||.+-| .|+. -+|. +... +...++..
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi------------~E~~---~~h~-----~~~~-------~ea~~~a~ 134 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI------------REAL---RLHG-----KGSR-------AEARKRAV 134 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHH------------HHHH---HHhc-----cccH-------HHHHHHHH
Confidence 7655 367999999986 5553 554444 3332 0110 0000 12345667
Q ss_pred HHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CC
Q psy13234 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--AS 1123 (1192)
Q Consensus 1046 ~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~g 1123 (1192)
+.|+.+++.+-... ..=...||||||||+.||+||..||++||+||||.|||..|.++|.+.|+++. .|
T Consensus 135 elL~~Vgl~~~~~~---------~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 135 ELLEQVGLPDPERR---------DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHcCCCChhhh---------ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 77888888665443 12235799999999999999999999999999999999999999999999886 56
Q ss_pred ceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHH
Q psy13234 1124 RTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERN-GVYASM 1169 (1192)
Q Consensus 1124 rTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L 1169 (1192)
.++|+|||++..+. -||||+||++|+++|.|+.++++++. ..|.+.
T Consensus 206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~ 253 (539)
T COG1123 206 MAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRG 253 (539)
T ss_pred cEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHH
Confidence 89999999999986 59999999999999999999999763 445443
No 308
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=8e-34 Score=305.05 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=153.9
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-ECCeecCCCChHhhcccEEEEcCCCcccc
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIF-IDNQNIKTVSQASLRQAIGVVPQDTVLFN 991 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~-IDG~DI~~i~~~sLR~~Ig~VPQDp~LFn 991 (1192)
+++++| +.+.+|+. +||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|+
T Consensus 2 vl~~vs---~~i~~Ge~---~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~ 62 (213)
T PRK15177 2 VLDKTD---FVMGYHEH---IGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILP 62 (213)
T ss_pred eeeeee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCC
Confidence 467788 88898888 999999999999999999999999999997 787543 1346788888
Q ss_pred c-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccc
Q psy13234 992 N-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQV 1068 (1192)
Q Consensus 992 G-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~V 1068 (1192)
+ |++|||.+... +.+.+++.+.+ .+ ...+++.+++++
T Consensus 63 ~ltv~enl~~~~~~~~~~~~~~~~~~---------------------------------~~-------~~~l~~~~~~~~ 102 (213)
T PRK15177 63 GLTGEENARMMASLYGLDGDEFSHFC---------------------------------YQ-------LTQLEQCYTDRV 102 (213)
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHH---------------------------------HH-------HhChhHHhhchH
Confidence 6 99999986421 11222211111 11 223455567766
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHH-hcCEEEEEeC
Q psy13234 1069 GERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII-HADEILVMHA 1147 (1192)
Q Consensus 1069 GErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~-~aDrIlVLe~ 1147 (1192)
+ .||||||||++||||++++|++++|||||+++|+.+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++
T Consensus 103 ~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~ 178 (213)
T PRK15177 103 S----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLH 178 (213)
T ss_pred h----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEEC
Confidence 5 4999999999999999999999999999999999999999998876667789999999999985 6999999999
Q ss_pred CEEEEEcCHHHHHhcCcHH
Q psy13234 1148 GEIVERGRHEELLERNGVY 1166 (1192)
Q Consensus 1148 G~IvE~GtheELL~~~G~Y 1166 (1192)
|++++.|+-++.....+.|
T Consensus 179 G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 179 GKITMCEDLAQATALFEQY 197 (213)
T ss_pred CeEEEeCCHHHHHHHHHHH
Confidence 9999999999887544333
No 309
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=316.99 Aligned_cols=228 Identities=30% Similarity=0.459 Sum_probs=179.9
Q ss_pred cccceeeecCCC----------CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC
Q psy13234 900 MEEDQFGFRKGK----------GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 969 (1192)
Q Consensus 900 fenVsFsY~~~~----------~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~ 969 (1192)
.+++..+|+.+. .+.+++| ++..+|++ ++|||+|||||||+.+.|+|+.+++ |+|+.+|+||.
T Consensus 279 ~~~v~v~f~i~~g~~~r~~~~~~AVd~is---l~L~~gqT---lGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 279 VEDLRVWFPIKGGFLRRTVDHLRAVDGIS---LTLRRGQT---LGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred ecceEEEEecCCccccccchheEEeccce---eEecCCCe---EEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 778888886432 2345666 89999998 9999999999999999999999988 99999999999
Q ss_pred CCChHh---hcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHH
Q psy13234 970 TVSQAS---LRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046 (1192)
Q Consensus 970 ~i~~~s---LR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~ 1046 (1192)
..+.+. +|+++-+|.|||+ ||+ +|..+=++|++-- ..+|+-.+ . ....++++.+
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPy---gSL-------sPRmtV~qII~EG--L~vh~~~l-----s------~~eR~~rv~~ 408 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPY---GSL-------SPRMTVGQIIEEG--LRVHEPKL-----S------AAERDQRVIE 408 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCC---CCC-------CcccCHHHHhhhh--hhhcCCCC-----C------HHHHHHHHHH
Confidence 998655 6899999999997 332 1223333433321 11221111 0 1234677888
Q ss_pred HHHHcChHHHHh-cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CC
Q psy13234 1047 AATSADIHERIL-SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--AS 1123 (1192)
Q Consensus 1047 AL~~A~Lhd~I~-~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~g 1123 (1192)
||+.+|++.... +.| ..+|||||||||||||+.-+|++++|||||||||-.-.++|.+.|+++. .+
T Consensus 409 aL~EVGLDp~~r~RYP-----------hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~ 477 (534)
T COG4172 409 ALEEVGLDPATRNRYP-----------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG 477 (534)
T ss_pred HHHHcCCChhHhhcCC-----------cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhC
Confidence 999999876543 233 3599999999999999999999999999999999999999999998764 45
Q ss_pred ceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHH
Q psy13234 1124 RTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERN-GVYAS 1168 (1192)
Q Consensus 1124 rTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~ 1168 (1192)
-+=++|+|+|..++ -||+|+||++|+|||+|+-+++.++. ..|.+
T Consensus 478 LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 478 LSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred CeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 78999999999997 49999999999999999999999764 55654
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2e-33 Score=340.95 Aligned_cols=213 Identities=26% Similarity=0.347 Sum_probs=168.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.++++++++| |.+.+|+. +||+||||||||||+++|.|+++|++|+|.+++ +.+
T Consensus 9 i~~l~~~y~~~~~il~~vs---~~i~~Ge~---~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~ 71 (556)
T PRK11819 9 MNRVSKVVPPKKQILKDIS---LSFFPGAK---IGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIK 71 (556)
T ss_pred EeeEEEEeCCCCeeeeCce---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCE
Confidence 8899999973467999999 99999999 999999999999999999999999999999975 246
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCC----------------CHH----------HHHHHhhhhhhhhhhccCCCCCch
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINA----------------SEE----------EVKEAATSADIHERILSFPDGYDT 1032 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~a----------------sdE----------eV~eAa~~a~lh~~i~~~pd~~~~ 1032 (1192)
||||||+|.+++. |++||+.++.... .++ ++.+++... +.+
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-- 139 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAA----------DAW-- 139 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhc----------Ccc--
Confidence 9999999999975 9999998752100 000 000110000 000
Q ss_pred hhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH
Q psy13234 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112 (1192)
Q Consensus 1033 ~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~ 1112 (1192)
.-++++.++++..++. . .+.++ ..||||||||++||||++.+|++||||||||+||+++.+.
T Consensus 140 ------~~~~~~~~~l~~~gl~-------~-~~~~~----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~ 201 (556)
T PRK11819 140 ------DLDSQLEIAMDALRCP-------P-WDAKV----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAW 201 (556)
T ss_pred ------chHHHHHHHHHhCCCC-------c-ccCch----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHH
Confidence 0134455566655552 1 24444 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEecChhHHHh-cCEEEEEeCCEEE-EEcCHHHHHh
Q psy13234 1113 IQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIV-ERGRHEELLE 1161 (1192)
Q Consensus 1113 Iq~aL~~l~~grTvIvIAHRLSTI~~-aDrIlVLe~G~Iv-E~GtheELL~ 1161 (1192)
+.+.|++.. .|+|+|||+++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 202 l~~~L~~~~--~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 202 LEQFLHDYP--GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred HHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence 999998863 699999999998865 8999999999986 7799887654
No 311
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=300.85 Aligned_cols=219 Identities=26% Similarity=0.421 Sum_probs=181.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH-hhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA-SLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~-sLR~ 978 (1192)
++|++-.|.. ..+++++| +.+.+|+. ++++||+|+||||+++.|+|+.+|.+|+|.++|+||...+.+ -.|.
T Consensus 6 v~~l~~~YG~-~~~L~gvs---l~v~~Gei---v~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 6 VENLSAGYGK-IQALRGVS---LEVERGEI---VALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred EEeEeecccc-eeEEeeee---eEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 7888888865 67899999 99999999 999999999999999999999999999999999999999865 4677
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
-|+||||.-.+|+. ||.||+.+|.-...+++- +...+++.-
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~--------------------------------------~~~~~e~v~ 120 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEA--------------------------------------QERDLEEVY 120 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhccccccc--------------------------------------ccccHHHHH
Confidence 89999999999995 999999976321111000 000011112
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST 1135 (1192)
.-||. +...-..+|.+|||||+|-+||||||..+|++|+|||||.+|-|.--++|.++|+++.+ +-|++.|=++...
T Consensus 121 ~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~ 199 (237)
T COG0410 121 ELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF 199 (237)
T ss_pred HHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH
Confidence 22332 23334567889999999999999999999999999999999999999999999999875 4599999999886
Q ss_pred H-HhcCEEEEEeCCEEEEEcCHHHHHhcCc
Q psy13234 1136 I-IHADEILVMHAGEIVERGRHEELLERNG 1164 (1192)
Q Consensus 1136 I-~~aDrIlVLe~G~IvE~GtheELL~~~G 1164 (1192)
. +-|||-+||++|+|+..|+.+||.+...
T Consensus 200 Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 200 ALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred HHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 4 6799999999999999999999997643
No 312
>KOG0060|consensus
Probab=100.00 E-value=2.4e-32 Score=317.95 Aligned_cols=365 Identities=19% Similarity=0.212 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 735 RTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSL 814 (1192)
Q Consensus 735 ~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~l 814 (1192)
..+..-+.++.+.+.+-.-+....|.|.|--|+.++.|..+-+...+...+..........++.++++++-..+.+++.+
T Consensus 250 I~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~ 329 (659)
T KOG0060|consen 250 IVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYV 329 (659)
T ss_pred hhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 34444445556666666667888899999999999999888888877777766666677778888888776655444333
Q ss_pred HHHHHHH---hcCcccHHHHHHH-------HHHHHHHHHHHHH-------HHHHHHHHHH---hc-----CCCccccccc
Q psy13234 815 LCVHEVV---NNQTLTVGDYTLF-------VSYILQLYVPLNW-------FDALTRYLEA---SL-----VPLPKKTNAK 869 (1192)
Q Consensus 815 l~a~~vv---~~g~iTvG~lvl~-------lsyi~ql~~PL~~-------l~~~~~~l~~---a~-----~~~erl~~~~ 869 (1192)
+++.-+. ..+.+++.++.-. ..|+.+.+.-+.. ++.+..-+.+ .. .+.++-.+.+
T Consensus 330 vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~ 409 (659)
T KOG0060|consen 330 VIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEE 409 (659)
T ss_pred EEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhh
Confidence 3222111 1234666665422 2223332222211 1111111110 00 0111100000
Q ss_pred cccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHH
Q psy13234 870 ECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIR 948 (1192)
Q Consensus 870 ~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlr 948 (1192)
+.. .........++.......+..++ +++|+++-|. +.-..+++| +.++.|+. +.|+||||||||+|+|
T Consensus 410 ~~~--E~~~~l~~~~G~~~~~~~Dn~i~--~e~v~l~tPt~g~~lie~Ls---~~V~~g~~---LLItG~sG~GKtSLlR 479 (659)
T KOG0060|consen 410 ELG--EAEWGLSLPPGSGKAEPADNAIE--FEEVSLSTPTNGDLLIENLS---LEVPSGQN---LLITGPSGCGKTSLLR 479 (659)
T ss_pred hhh--hhhhccCCCCCCcccccccceEE--eeeeeecCCCCCceeeeeee---eEecCCCe---EEEECCCCCchhHHHH
Confidence 000 00000111111111111124566 9999999887 444556788 99999999 9999999999999999
Q ss_pred HHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCC
Q psy13234 949 LLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPD 1028 (1192)
Q Consensus 949 LLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd 1028 (1192)
.|.|+|+..+|++.--...- -+.+=||||.|+.=.||+||-+-|- +- .++..
T Consensus 480 vlggLWp~~~G~l~k~~~~~--------~~~lfflPQrPYmt~GTLRdQvIYP--~~-~~~~~----------------- 531 (659)
T KOG0060|consen 480 VLGGLWPSTGGKLTKPTDGG--------PKDLFFLPQRPYMTLGTLRDQVIYP--LK-AEDMD----------------- 531 (659)
T ss_pred HHhcccccCCCeEEecccCC--------CCceEEecCCCCccccchhheeecc--Cc-ccccc-----------------
Confidence 99999999999997432110 0448899999999999999999873 11 11111
Q ss_pred CCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCC-CCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q psy13234 1029 GYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGER-GLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107 (1192)
Q Consensus 1029 ~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGEr-G~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~ 1107 (1192)
+.-++|+++.+-|+.+++.+.+.. -+|+|+++.-+ ..-||+||+||+|.||-+|.+|++-+|||+|||+|.
T Consensus 532 -------~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~ 603 (659)
T KOG0060|consen 532 -------SKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTE 603 (659)
T ss_pred -------ccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccH
Confidence 113678899999999999887665 48999888644 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeC
Q psy13234 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 1147 (1192)
Q Consensus 1108 eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~ 1147 (1192)
+.|..+-+.+++. |-|.|.|.||-|.-+.-|.++-|+.
T Consensus 604 dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 604 DVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999875 8999999999999999999999985
No 313
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.8e-34 Score=313.94 Aligned_cols=201 Identities=23% Similarity=0.271 Sum_probs=157.3
Q ss_pred ccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCeecC
Q psy13234 901 EEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIF-----------IDNQNIK 969 (1192)
Q Consensus 901 enVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~-----------IDG~DI~ 969 (1192)
.+++++|+.+++++++++ + +.+|+. +||+||||||||||+++|.|+++|++|+|. +||+++.
T Consensus 4 ~~~~~~y~~~~~~l~~i~---~-i~~Ge~---~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP---V-PREGQV---LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecCcchhhhcCC---C-CCCCCE---EEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhh
Confidence 467889975556888886 4 667777 999999999999999999999999999996 8899987
Q ss_pred CCChHhhcc--cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 970 TVSQASLRQ--AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 970 ~i~~~sLR~--~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
+...+..|. .++++||++.+++.++.+|+...-.... .++++.++
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~---------------------------------~~~~~~~~ 123 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKD---------------------------------ERGKLDEL 123 (255)
T ss_pred hhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhH---------------------------------HHHHHHHH
Confidence 765443433 4788988888777666666643100000 12233444
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceE
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTT 1126 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTv 1126 (1192)
++..++.+ .......+||||||||++||||++++|++++||||||+||+++.+.+.+.|++..+ ++|+
T Consensus 124 l~~~gl~~-----------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tI 192 (255)
T cd03236 124 VDQLELRH-----------VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192 (255)
T ss_pred HHHcCCch-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 56655533 33445668999999999999999999999999999999999999999999988764 6999
Q ss_pred EEEecChhHHHh-cCEEEEEeCCEEEEE
Q psy13234 1127 IIVAHRLSTIIH-ADEILVMHAGEIVER 1153 (1192)
Q Consensus 1127 IvIAHRLSTI~~-aDrIlVLe~G~IvE~ 1153 (1192)
|+|||+++.+.. ||+|++|+ |++++.
T Consensus 193 IiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 193 LVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred EEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 999999999885 99999995 666653
No 314
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-33 Score=342.62 Aligned_cols=230 Identities=24% Similarity=0.304 Sum_probs=168.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|++++++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 7 ~~nls~~~~~~~~il~~is---~~i~~Ge~---~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~ 69 (552)
T TIGR03719 7 MNRVSKVVPPKKEILKDIS---LSFFPGAK---IGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIK 69 (552)
T ss_pred EeeEEEecCCCCeeecCce---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCE
Confidence 8899999974467999999 99999999 999999999999999999999999999999986 247
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCCC--HHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH-
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINAS--EEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE- 1055 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~as--dEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd- 1055 (1192)
||||||+|.+|+. |++|||.++..... +.++.... . .+.++.++ ........+++.++++.++.++
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~------~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEIS------A---KFAEPDAD-MDALLAEQAELQEIIDAADAWDL 139 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHH------H---HhccCchh-hHHHHHHHHHHHHHHHhcCcchh
Confidence 9999999999864 99999987521100 00000000 0 00000000 0000001223444444444332
Q ss_pred ------HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEE
Q psy13234 1056 ------RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV 1129 (1192)
Q Consensus 1056 ------~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvI 1129 (1192)
.+..+ |++ .......+||||||||++||||++.+|++|||||||++||+++.+.+.+.|++. ++|+|+|
T Consensus 140 ~~~~~~~l~~~--~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIii 214 (552)
T TIGR03719 140 DRKLEIAMDAL--RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAV 214 (552)
T ss_pred HHHHHHHHhhC--CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEE
Confidence 12221 221 112334579999999999999999999999999999999999999999999876 3699999
Q ss_pred ecChhHHHh-cCEEEEEeCCEEE-EEcCHHHHHh
Q psy13234 1130 AHRLSTIIH-ADEILVMHAGEIV-ERGRHEELLE 1161 (1192)
Q Consensus 1130 AHRLSTI~~-aDrIlVLe~G~Iv-E~GtheELL~ 1161 (1192)
||+++.+.. ||+|++|++|+++ ..|++++.++
T Consensus 215 sHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 215 THDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred eCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 999999875 8999999999976 6799987654
No 315
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=337.69 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=168.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh-Hhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~-~sLR~ 978 (1192)
++|++. ++++++| +.+.+|+. +||+||||||||||+++|.|+.+|++|+|.+||+++...+. +.+|+
T Consensus 260 ~~~l~~------~~l~~vs---l~i~~Ge~---~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 260 VDNLSG------PGVNDVS---FTLRKGEI---LGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred EeCccc------CCcccce---EEEcCCcE---EEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence 666653 3588888 99999988 99999999999999999999999999999999999987664 34678
Q ss_pred cEEEEcCCC---ccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDT---VLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp---~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
+||||||++ .+| +.|++||+.++..... . +.....+. ...++++.++++..++.
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~-------~----------~~~~~~~~-----~~~~~~~~~~l~~~~l~ 385 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYF-------S----------RAGGSLKH-----ADEQQAVSDFIRLFNIK 385 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhh-------c----------ccccccCH-----HHHHHHHHHHHHhcCCC
Confidence 899999997 344 4799999986421000 0 00000000 00123344455554441
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRL 1133 (1192)
++-.+++ ...||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++
T Consensus 386 ------~~~~~~~----~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~ 455 (501)
T PRK10762 386 ------TPSMEQA----IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM 455 (501)
T ss_pred ------CCCccCc----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 0123333 44699999999999999999999999999999999999999999999875 478999999999
Q ss_pred hHHH-hcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1134 STII-HADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1134 STI~-~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
+.+. .||+|++|++|++++.|+.+++.
T Consensus 456 ~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 456 PEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred HHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 9875 59999999999999999887753
No 316
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.1e-33 Score=338.75 Aligned_cols=220 Identities=20% Similarity=0.330 Sum_probs=171.8
Q ss_pred cccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCeecCCCCh-Hh
Q psy13234 900 MEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-ESGDIFIDNQNIKTVSQ-AS 975 (1192)
Q Consensus 900 fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-~sGsI~IDG~DI~~i~~-~s 975 (1192)
++|++++|+. ++.+++++| +.+.+|+. +||+||||||||||+++|+|+++| ++|+|.++|+++...+. ..
T Consensus 260 ~~~l~~~~~~~~~~~~l~~is---~~i~~Ge~---~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~ 333 (500)
T TIGR02633 260 ARNLTCWDVINPHRKRVDDVS---FSLRRGEI---LGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQA 333 (500)
T ss_pred EeCCcccccccccccccccce---eEEeCCcE---EEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 8888888842 356899999 99999999 999999999999999999999995 89999999999875543 56
Q ss_pred hcccEEEEcCCC---cccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 976 LRQAIGVVPQDT---VLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 976 LR~~Ig~VPQDp---~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
+|++|+||||++ .+|+ .|+++|+.++... .. . ... +.+. ...++++.++++..
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~----~~---~----------~~~-~~~~-----~~~~~~~~~~l~~~ 390 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK----SF---C----------FKM-RIDA-----AAELQIIGSAIQRL 390 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh----hh---c----------cCC-cCCH-----HHHHHHHHHHHHhc
Confidence 788999999996 3665 5999999875210 00 0 000 0000 01123455556665
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEe
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVA 1130 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIA 1130 (1192)
++.+ +-.+.++ ..||||||||++||||++.+|++|||||||++||..+.+.+.+.|+++. +++|+|+||
T Consensus 391 ~l~~------~~~~~~~----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivs 460 (500)
T TIGR02633 391 KVKT------ASPFLPI----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460 (500)
T ss_pred CccC------CCccCcc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5421 1124444 3699999999999999999999999999999999999999999998764 468999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHH
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEE 1158 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheE 1158 (1192)
|+++.+. .||+|++|++|+++..++.++
T Consensus 461 Hd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 461 SELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 9999886 599999999999998776544
No 317
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-34 Score=339.59 Aligned_cols=218 Identities=23% Similarity=0.369 Sum_probs=169.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-hHhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~-~~sLR~ 978 (1192)
++++++ +.+++++| +.+.+|+. +||+||+|||||||+++|+|+++|++|+|.+||+++...+ .+..|+
T Consensus 260 ~~~~~~-----~~~l~~is---l~i~~Ge~---~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 260 LDGLKG-----PGLREPIS---FSVRAGEI---VGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred Eecccc-----CCccccee---EEEeCCcE---EEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhC
Confidence 566653 24788998 99999998 9999999999999999999999999999999999987654 345678
Q ss_pred cEEEEcCCCc---ccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDTV---LFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp~---LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
+|+|+||++. +|. .|+.||+.++..... . +.++. ......++++.+.++..++.
T Consensus 329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~-------~------------~~~~~---~~~~~~~~~~~~~l~~~~l~ 386 (501)
T PRK11288 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHH-------L------------RAGCL---INNRWEAENADRFIRSLNIK 386 (501)
T ss_pred CCEEcCcCHhhCCCcCCCCHHHHhccccchhh-------c------------ccccc---cChHHHHHHHHHHHHhcCcc
Confidence 9999999972 554 899999986521000 0 00000 00000123344455555441
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRL 1133 (1192)
++-.+++++ .||||||||++||||++.+|++|||||||++||..+.+.+.+.|+++.+ +.|+|+|||++
T Consensus 387 ------~~~~~~~~~----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 456 (501)
T PRK11288 387 ------TPSREQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456 (501)
T ss_pred ------cCCccCccc----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 122355544 7999999999999999999999999999999999999999999988754 68999999999
Q ss_pred hHHH-hcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1134 STII-HADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1134 STI~-~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
+.+. .||+|++|++|++++.|+++|..
T Consensus 457 ~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 457 PEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9885 59999999999999999988755
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=336.31 Aligned_cols=223 Identities=25% Similarity=0.326 Sum_probs=167.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||. ++
T Consensus 4 i~~ls~~~~~-~~il~~vs---l~i~~Ge~---~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 65 (530)
T PRK15064 4 TANITMQFGA-KPLFENIS---VKFGGGNR---YGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ER 65 (530)
T ss_pred EEEEEEEeCC-cEeEeCCE---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CE
Confidence 7899999963 57899999 99999999 9999999999999999999999999999999983 46
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCCCH--HHHHHHhhh-----------hhhhhhhccCCCCCchhhhhhcccHHHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINASE--EEVKEAATS-----------ADIHERILSFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~asd--EeV~eAa~~-----------a~lh~~i~~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
|+|+||++.+|.+ |++||+.++...... .+...+... ....++..+ .+++ ..++++.
T Consensus 66 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~ 136 (530)
T PRK15064 66 LGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAE-MDGY--------TAEARAG 136 (530)
T ss_pred EEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHh-cCch--------hHHHHHH
Confidence 9999999988875 999999875210000 000000000 000000000 0000 1123455
Q ss_pred HHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCce
Q psy13234 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT 1125 (1192)
Q Consensus 1046 ~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grT 1125 (1192)
++++..++.+... + ....+||||||||++||||++.+|++|||||||++||+++.+.+.+.|.+ .++|
T Consensus 137 ~~l~~~gl~~~~~------~----~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~t 204 (530)
T PRK15064 137 ELLLGVGIPEEQH------Y----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNST 204 (530)
T ss_pred HHHHhCCCChhHh------c----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCe
Confidence 5666655532211 1 22457999999999999999999999999999999999999999999975 4799
Q ss_pred EEEEecChhHHH-hcCEEEEEeCCEE-EEEcCHHHHHh
Q psy13234 1126 TIIVAHRLSTII-HADEILVMHAGEI-VERGRHEELLE 1161 (1192)
Q Consensus 1126 vIvIAHRLSTI~-~aDrIlVLe~G~I-vE~GtheELL~ 1161 (1192)
+|+|||+++.+. .||+|++|++|++ ++.|++++.++
T Consensus 205 iiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 205 MIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 999999999885 5899999999999 47899998864
No 319
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=307.37 Aligned_cols=178 Identities=33% Similarity=0.499 Sum_probs=151.5
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcccc
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 991 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFn 991 (1192)
.++++|| |.+.+|++ ++|||+|||||||+.|+|+|+++|++|+|.++|+|+..++
T Consensus 27 ~avd~Vs---f~i~~ge~---~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~------------------- 81 (268)
T COG4608 27 KAVDGVS---FSIKEGET---LGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------------- 81 (268)
T ss_pred EEeccee---EEEcCCCE---EEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------------------
Confidence 4677888 99999999 9999999999999999999999999999999999987776
Q ss_pred ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH-HHhcCCCCCcccccC
Q psy13234 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE-RILSFPDGYDTQVGE 1070 (1192)
Q Consensus 992 GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd-~I~~LP~GyDT~VGE 1070 (1192)
++. .++++.+.|+.+++.+ +..+.|
T Consensus 82 ---~~~------------------------------------------~~~~v~elL~~Vgl~~~~~~ryP--------- 107 (268)
T COG4608 82 ---KEE------------------------------------------RRERVLELLEKVGLPEEFLYRYP--------- 107 (268)
T ss_pred ---hhH------------------------------------------HHHHHHHHHHHhCCCHHHhhcCC---------
Confidence 111 1234555568887765 333443
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHHh-cCEEEEEeC
Q psy13234 1071 RGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHA 1147 (1192)
Q Consensus 1071 rG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~~-aDrIlVLe~ 1147 (1192)
..|||||||||+|||||.-+|++++.||||||||.-..++|.+.+.++.+ +-|.++|||+++.+++ ||||.||..
T Consensus 108 --helSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~ 185 (268)
T COG4608 108 --HELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL 185 (268)
T ss_pred --cccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEec
Confidence 46999999999999999999999999999999999999999999876643 6899999999999986 899999999
Q ss_pred CEEEEEcCHHHHHhc-CcHHHHHH
Q psy13234 1148 GEIVERGRHEELLER-NGVYASMW 1170 (1192)
Q Consensus 1148 G~IvE~GtheELL~~-~G~Ya~L~ 1170 (1192)
|+|+|.|+-+|+.++ ...|-+..
T Consensus 186 G~iVE~g~~~~~~~~p~HpYTk~L 209 (268)
T COG4608 186 GKIVEIGPTEEVFSNPLHPYTKAL 209 (268)
T ss_pred CceeEecCHHHHhhCCCCHHHHHH
Confidence 999999999999975 35565544
No 320
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.5e-33 Score=367.19 Aligned_cols=216 Identities=20% Similarity=0.279 Sum_probs=183.5
Q ss_pred cccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|++++|.. ++.+++++| +.+.+|+. +||+||+|||||||+|+|.|+.+|++|+|.++|.++.+ +....|+
T Consensus 1940 v~nLsK~Y~~~~~~aL~~IS---f~I~~GEi---~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~ 2012 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDRLC---VGVRPGEC---FGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQ 2012 (2272)
T ss_pred EEEEEEEECCCCceEEEeeE---EEEcCCcE---EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhh
Confidence 8899999975 367999999 99999998 99999999999999999999999999999999999975 4567889
Q ss_pred cEEEEcCCCcccc-ccHHHHHhccc-c-CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 979 AIGVVPQDTVLFN-NSIKFNIQYAR-I-NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 979 ~Ig~VPQDp~LFn-GTIreNI~~G~-~-~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
+|||+||++.+++ -|++||+.+.. . ..+++++ ++.+.++++..++.+
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~------------------------------~~~v~~lLe~lgL~~ 2062 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEI------------------------------EKVANWSIQSLGLSL 2062 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHH------------------------------HHHHHHHHHHcCCHH
Confidence 9999999999987 59999997531 1 1122221 223455667777766
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLS 1134 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLS 1134 (1192)
...+ . ...||||||||++||||++.+|+|++||||||+||+++.+.+.+.|++.. +|+|+|++||+++
T Consensus 2063 ~~dk-------~----~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me 2131 (2272)
T TIGR01257 2063 YADR-------L----AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131 (2272)
T ss_pred HhcC-------C----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 5332 2 34699999999999999999999999999999999999999999998864 5799999999999
Q ss_pred HHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1135 TII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
.+. -||||++|++|++++.|+.++|..+-
T Consensus 2132 e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2132 ECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 886 59999999999999999999997653
No 321
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.3e-33 Score=285.76 Aligned_cols=195 Identities=27% Similarity=0.409 Sum_probs=161.9
Q ss_pred CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH---hhc-ccEEEEcCC
Q psy13234 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLR-QAIGVVPQD 986 (1192)
Q Consensus 911 ~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~---sLR-~~Ig~VPQD 986 (1192)
-.++++++ +.+.+|++ +|||||||||||||+-+|.|+-+|++|+|++.|+++.+++.+ .+| +++|+|.|.
T Consensus 23 l~IL~~V~---L~v~~Ge~---vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 23 LSILKGVE---LVVKRGET---VAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred eeEeecce---EEecCCce---EEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 35788998 99999999 999999999999999999999999999999999999999854 344 689999999
Q ss_pred Ccccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCC
Q psy13234 987 TVLFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062 (1192)
Q Consensus 987 p~LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~ 1062 (1192)
-+|.+ -|-.||...-.. +.+++. .+.-.+-|+++|+.+.+...|
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~~~~~-------------------------------~~~A~~lL~~vGLg~Rl~HyP- 144 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGESSADS-------------------------------RAGAKALLEAVGLGKRLTHYP- 144 (228)
T ss_pred eeccccchhhhhccchhhhcCCccccH-------------------------------HHHHHHHHHHhCcccccccCc-
Confidence 99886 588899864210 001111 111233456666666555444
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChhHHHhcC
Q psy13234 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLSTIIHAD 1140 (1192)
Q Consensus 1063 GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLSTI~~aD 1140 (1192)
.+|||||+||+|||||+...|+||+-||||-|||.+|.++|.+.+.++- .+.|.|+|||+++...+||
T Consensus 145 ----------~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 145 ----------AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred ----------cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhh
Confidence 5799999999999999999999999999999999999999999987654 4589999999999999999
Q ss_pred EEEEEeCCEEEEE
Q psy13234 1141 EILVMHAGEIVER 1153 (1192)
Q Consensus 1141 rIlVLe~G~IvE~ 1153 (1192)
|++-|++|+++|.
T Consensus 215 R~~r~~~G~l~~~ 227 (228)
T COG4181 215 RQLRLRSGRLVED 227 (228)
T ss_pred heeeeecceeccC
Confidence 9999999999863
No 322
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-33 Score=334.68 Aligned_cols=202 Identities=24% Similarity=0.355 Sum_probs=167.2
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s 975 (1192)
++ ++|++++|+. +++++++| +.+.+|+. ++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 320 l~--~~~l~~~~~~-~~~l~~is---~~i~~Ge~---~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--------- 381 (530)
T PRK15064 320 LE--VENLTKGFDN-GPLFKNLN---LLLEAGER---LAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--------- 381 (530)
T ss_pred EE--EEeeEEeeCC-ceeecCcE---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---------
Confidence 55 9999999964 46899999 99999998 9999999999999999999999999999999983
Q ss_pred hcccEEEEcCCCc--ccc-ccHHHHHhccc-cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 976 LRQAIGVVPQDTV--LFN-NSIKFNIQYAR-INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 976 LR~~Ig~VPQDp~--LFn-GTIreNI~~G~-~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
++|||+||++. +++ .|+++|+.+.. +..+ ++++.++|+..
T Consensus 382 --~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~----------------------------------~~~~~~~l~~~ 425 (530)
T PRK15064 382 --ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDD----------------------------------EQAVRGTLGRL 425 (530)
T ss_pred --eEEEEEcccccccCCCCCcHHHHHHHhccCCcc----------------------------------HHHHHHHHHHc
Confidence 57999999974 443 69999986421 1111 22334444666
Q ss_pred ChH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1052 DIH-ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1052 ~Lh-d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
++. +. .+ .....||||||||++||||++++|+||||||||++||+.+.+.+.+.|++. +.|+|+||
T Consensus 426 ~l~~~~-------~~----~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vs 492 (530)
T PRK15064 426 LFSQDD-------IK----KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVS 492 (530)
T ss_pred CCChhH-------hc----CcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEe
Confidence 552 22 12 334579999999999999999999999999999999999999999999886 46999999
Q ss_pred cChhHHHh-cCEEEEEeCCEEE-EEcCHHHHHhcCc
Q psy13234 1131 HRLSTIIH-ADEILVMHAGEIV-ERGRHEELLERNG 1164 (1192)
Q Consensus 1131 HRLSTI~~-aDrIlVLe~G~Iv-E~GtheELL~~~G 1164 (1192)
|+++.+.. ||+|++|++|+++ +.|++++++...|
T Consensus 493 Hd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 493 HDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred CCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 99998865 9999999999998 7899998876544
No 323
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-33 Score=303.77 Aligned_cols=186 Identities=29% Similarity=0.467 Sum_probs=162.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC----CCChHhhcccEEEEcCCCcccc-ccHHHHHhccccCCCH
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK----TVSQASLRQAIGVVPQDTVLFN-NSIKFNIQYARINASE 1007 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~----~i~~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~asd 1007 (1192)
+||-|+||||||||+|++.|+..|++|.|.+||.-+. .+...--+++||||.||.-||+ -|+|-|++||....+.
T Consensus 27 TAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~ 106 (352)
T COG4148 27 TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMR 106 (352)
T ss_pred EEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcccch
Confidence 9999999999999999999999999999999998664 3555666889999999999998 6999999999865544
Q ss_pred HHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q psy13234 1008 EEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIAR 1087 (1192)
Q Consensus 1008 EeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALAR 1087 (1192)
++..+++ ..-|+.....+.| .+||||||||+||+|
T Consensus 107 ~~fd~iv----------------------------------~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGR 141 (352)
T COG4148 107 AQFDQLV----------------------------------ALLGIEHLLDRYP-----------GTLSGGEKQRVAIGR 141 (352)
T ss_pred HhHHHHH----------------------------------HHhCcHHHHhhCC-----------CccCcchhhHHHHHH
Confidence 4444444 6777777776665 579999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC--ceEEEEecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1088 TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1088 ALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g--rTvIvIAHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
||+.+|++|+||||.|+||-...++|.--|+++.++ --++.|||.+..+ +-||+|++|++|+|...|.-+|.+++.
T Consensus 142 ALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 142 ALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred HHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999999999999999999999999999888765 5688999999876 569999999999999999999998753
No 324
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-33 Score=290.32 Aligned_cols=218 Identities=26% Similarity=0.407 Sum_probs=181.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
.+|++++-. ++..++++| +...+||. +||+||+|||||||+|+|.|...|++|++.++|+++.+++..++-++
T Consensus 4 a~nls~~~~-Gr~ll~~vs---l~~~pGev---~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ 76 (259)
T COG4559 4 AENLSYSLA-GRRLLDGVS---LDLRPGEV---LAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76 (259)
T ss_pred eeeeEEEee-cceeccCcc---eeccCCcE---EEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHH
Confidence 566666653 567889999 99999999 99999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcc-ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHH--HHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVL-FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE--VKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~L-FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdee--I~~AL~~A~Lhd~ 1056 (1192)
-++.||++.| |+=|+.|-+.+|+-.- + +. .+..+++ ..+++.++++..+
T Consensus 77 raVlpQ~s~laFpFtv~eVV~mGr~p~-----------------------~--~g---~~~~e~~~i~~~ala~~d~~~l 128 (259)
T COG4559 77 RAVLPQNSSLAFPFTVQEVVQMGRIPH-----------------------R--SG---REPEEDERIAAQALAATDLSGL 128 (259)
T ss_pred hhhcccCcccccceEHHHHHHhccccc-----------------------c--cC---CCchhhHHHHHHHHHHcChhhh
Confidence 9999999886 9999999999996311 0 00 0111222 3456678877655
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEE
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK------APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIV 1129 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLr------dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvI 1129 (1192)
-.+ .=..|||||+||+.+||.|.. ++++|+|||||||||..-...+.+..+++++ +..|++|
T Consensus 129 a~R-----------~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~V 197 (259)
T COG4559 129 AGR-----------DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAV 197 (259)
T ss_pred hcc-----------chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 332 234799999999999999974 4568999999999999999999999988765 5899999
Q ss_pred ecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1130 AHRLSTI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1130 AHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
-|+|+.. .-||||++|++|+++..|+++|.+..+
T Consensus 198 LHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~E 232 (259)
T COG4559 198 LHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232 (259)
T ss_pred EccchHHHHhhheeeeeeCCeEeecCCHHHhcCHH
Confidence 9999965 569999999999999999999998653
No 325
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=323.61 Aligned_cols=208 Identities=28% Similarity=0.407 Sum_probs=178.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh-Hhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~-~sLR~ 978 (1192)
++|++.+|+. .++|++++ |.+.+|+. .|++|++|+|||||+|.|.|.|+|++|+|.+||+...-.++ +....
T Consensus 11 ~~~i~K~Fgg-V~AL~~v~---l~v~~GEV---~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 11 LRGISKSFGG-VKALDGVS---LTVRPGEV---HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred eecceEEcCC-ceeeccce---eEEeCceE---EEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 8899999975 47899999 99999999 99999999999999999999999999999999999986665 66677
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCC------CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINA------SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~a------sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
-|+.|.||..|++. ||.|||-+|+.-. +..++.+.| .++|+..
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A------------------------------~~~l~~l 133 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA------------------------------RELLARL 133 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH------------------------------HHHHHHc
Confidence 79999999999985 9999999987421 223333333 3344444
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEe
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVA 1130 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIA 1130 (1192)
++. ...|++|+ +||+||||.|+||||+..+++|+|||||||+|+.+..+.+.+.++++. +|.++|+||
T Consensus 134 g~~-------~~~~~~v~----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~IS 202 (500)
T COG1129 134 GLD-------IDPDTLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYIS 202 (500)
T ss_pred CCC-------CChhhhhh----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 443 22688887 599999999999999999999999999999999999999999999886 569999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcC
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGR 1155 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~Gt 1155 (1192)
|||+.+. -||||.||.||+.+..++
T Consensus 203 Hrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 203 HRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred CcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999875 699999999999987665
No 326
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.4e-33 Score=334.02 Aligned_cols=216 Identities=22% Similarity=0.337 Sum_probs=168.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-hcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s-LR~ 978 (1192)
++|++. ..++++| +.+.+|+. +||+||+|||||||+++|.|+.+|++|+|.+||.++...+... .|+
T Consensus 271 ~~~l~~------~~l~~is---l~i~~Ge~---~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 271 VEDLTG------EGFRNIS---LEVRAGEI---LGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred EeCCCC------CCcccee---EEEcCCcE---EEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 666662 2578888 99999888 9999999999999999999999999999999999998876654 467
Q ss_pred cEEEEcCCC---cccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDT---VLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp---~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
+|+||||++ .+|. -|+.+|+....-. .. +..... ...++++.++++..++.
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~--------~~------------~~~~~~-----~~~~~~~~~~l~~~~l~ 393 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHN--------RR------------GFWIKP-----ARENAVLERYRRALNIK 393 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhh--------hh------------ccccCh-----HHHHHHHHHHHHHcCCC
Confidence 899999986 3665 4999998532000 00 000000 00112334444544432
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRL 1133 (1192)
++..+.++ ..||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++
T Consensus 394 ------~~~~~~~~----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~ 463 (510)
T PRK15439 394 ------FNHAEQAA----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL 463 (510)
T ss_pred ------CCCccCcc----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 12334444 4699999999999999999999999999999999999999999998875 379999999999
Q ss_pred hHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1134 STIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1134 STI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+.+.. ||+|++|++|+++..|+.+++...
T Consensus 464 ~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 464 EEIEQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred HHHHHhCCEEEEEECCEEEEEEccccCCHH
Confidence 99864 999999999999999998887643
No 327
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-32 Score=281.52 Aligned_cols=216 Identities=27% Similarity=0.443 Sum_probs=181.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC--------
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV-------- 971 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i-------- 971 (1192)
.+|++.+|.. ..+|+++| +....|+. +.|+|.|||||||+++++-=+-.|+.|+|.++|..|+--
T Consensus 9 v~dlHK~~G~-~eVLKGvS---L~A~~GdV---isIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 9 VEDLHKRYGE-HEVLKGVS---LQANAGDV---ISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred hhHHHhhccc-chhhccee---eecCCCCE---EEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 7788888864 46899999 88888888 999999999999999999999999999999999988532
Q ss_pred -----ChHhhcccEEEEcCCCcccc-ccHHHHHhcccc---CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHH
Q psy13234 972 -----SQASLRQAIGVVPQDTVLFN-NSIKFNIQYARI---NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042 (1192)
Q Consensus 972 -----~~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~---~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sde 1042 (1192)
..+.+|.+.|.|.|.--|.+ -|+.||.-=+.- ..+..|.++-|
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A---------------------------- 133 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA---------------------------- 133 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH----------------------------
Confidence 24678999999999998887 699999842110 12333333333
Q ss_pred HHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q psy13234 1043 EVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122 (1192)
Q Consensus 1043 eI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~ 1122 (1192)
..-|.++|+.|.-..-| ..|||||.||+||||||.-+|+++++||||||||++--.++.+.++++.+
T Consensus 134 --e~~L~kVGi~ek~~~YP-----------~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe 200 (256)
T COG4598 134 --EKYLAKVGIAEKADAYP-----------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE 200 (256)
T ss_pred --HHHHHHhCchhhhhcCc-----------cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 34457888887665444 47999999999999999999999999999999999999999999988764
Q ss_pred -CceEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1123 -SRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1123 -grTvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|||.++|||-+...++ +.+++.|++|.|.|+|+|+++..+.
T Consensus 201 EgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP 243 (256)
T COG4598 201 EGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNP 243 (256)
T ss_pred hCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCC
Confidence 6999999999999987 6899999999999999999999653
No 328
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-32 Score=295.05 Aligned_cols=230 Identities=22% Similarity=0.353 Sum_probs=182.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh-cc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL-R~ 978 (1192)
.++++.+|.. -.+++++| +++.+|+. +||+||+||||||++++|.|+|+|++|+|.++|+||..++.+.. |.
T Consensus 7 v~~l~k~FGG-l~Al~~Vs---l~v~~Gei---~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~ 79 (250)
T COG0411 7 VRGLSKRFGG-LTAVNDVS---LEVRPGEI---VGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79 (250)
T ss_pred eccceeecCC-EEEEecee---EEEcCCeE---EEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhc
Confidence 5666677643 34678888 99999888 99999999999999999999999999999999999999997664 56
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
-|+--.|.+-+|++ |+.||+..|.-.... .... +..|....+ .....|+-.+.|+.+++.+.-
T Consensus 80 Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~---~~~~---------l~~~~~~~~----e~~~~e~A~~~Le~vgL~~~a 143 (250)
T COG0411 80 GIARTFQITRLFPGLTVLENVAVGAHARLG---LSGL---------LGRPRARKE----EREARERARELLEFVGLGELA 143 (250)
T ss_pred cceeecccccccCCCcHHHHHHHHhhhhhh---hhhh---------hccccchhh----HHHHHHHHHHHHHHcCCchhh
Confidence 68889999999986 999999876321100 0000 011110000 011234445566666665442
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST 1135 (1192)
.+...+||+||+.|+-|||||..+|++|+||||.++|.++-...+.+.|++..+ +.|+++|-|+++.
T Consensus 144 -----------~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~ 212 (250)
T COG0411 144 -----------DRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL 212 (250)
T ss_pred -----------cchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH
Confidence 344557999999999999999999999999999999999999999999999885 3899999999998
Q ss_pred HHh-cCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1136 IIH-ADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1136 I~~-aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+.+ ||||+||+.|+++..|+|+|..+..
T Consensus 213 Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp 241 (250)
T COG0411 213 VMGLADRIVVLNYGEVIAEGTPEEVRNNP 241 (250)
T ss_pred HhhhccEEEeccCCcCcccCCHHHHhcCH
Confidence 864 9999999999999999999988654
No 329
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.1e-32 Score=323.94 Aligned_cols=218 Identities=21% Similarity=0.336 Sum_probs=165.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH-hhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA-SLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~-sLR~ 978 (1192)
++|+++.+ +++++++| +.+.+|+. +||+||+|||||||+++|.|+.+|++|+|.+||.++...+.. .+|+
T Consensus 253 ~~~l~~~~---~~~l~~vs---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 253 VRNLTSLR---QPSIRDVS---FDLHKGEI---LGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred EeCccccc---Ccccceee---EEEeCCcE---EEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 77887764 35889999 99999998 999999999999999999999999999999999999877653 4578
Q ss_pred cEEEEcCCCc---ccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 979 AIGVVPQDTV---LFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 979 ~Ig~VPQDp~---LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
.++|+||++. +|+ .|+.+|+.+.. +...++. ++ -.++ ...++++.+.++..++.
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~---------~~-~~~~-----~~~~~~~~~~l~~~~l~ 381 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISN-------IRNYKNK---------VG-LLDN-----SRMKSDTQWVIDSMRVK 381 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhh-------hhhhccc---------cc-ccCc-----HHHHHHHHHHHHhcCcc
Confidence 8999999963 566 57777743211 1000000 00 0000 00112233344443331
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRL 1133 (1192)
++-.++++ ..||||||||++||||++++|+||||||||++||..+.+.+.+.|+++. +++|+|+|||++
T Consensus 382 ------~~~~~~~~----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~ 451 (491)
T PRK10982 382 ------TPGHRTQI----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451 (491)
T ss_pred ------CCCccccc----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh
Confidence 11234444 4799999999999999999999999999999999999999999998764 479999999999
Q ss_pred hHHH-hcCEEEEEeCCEEEEEcCHHH
Q psy13234 1134 STII-HADEILVMHAGEIVERGRHEE 1158 (1192)
Q Consensus 1134 STI~-~aDrIlVLe~G~IvE~GtheE 1158 (1192)
+.+. .||++++|++|+++..++.++
T Consensus 452 ~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 452 PELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9885 599999999999998886643
No 330
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.98 E-value=2.6e-32 Score=326.25 Aligned_cols=216 Identities=18% Similarity=0.224 Sum_probs=165.3
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCeecCC-CCh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-ESGDIFIDNQNIKT-VSQ 973 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-~sGsI~IDG~DI~~-i~~ 973 (1192)
++ ++|+++.|+. +.+++++| +.+.+|+. ++|+||||||||||+++|.|+.+| ++|+|.+||.++.. .+.
T Consensus 261 l~--~~~l~~~~~~-~~il~~vs---l~i~~Ge~---~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 261 IV--LNNGVVSYND-RPILHNLS---WQVNPGEH---WQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred EE--EeceEEEECC-eeEEeece---EEEcCCCE---EEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH
Confidence 55 8999999964 45899999 99999999 999999999999999999998876 69999999987642 233
Q ss_pred HhhcccEEEEcCCCcccc---ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDTVLFN---NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFn---GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
...|++|+|+||++.++. .|+.+|+.++..+. . +. ..... ...++++.++++.
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~--------~---~~-------~~~~~------~~~~~~~~~~l~~ 387 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS--------I---GI-------YQAVS------DRQQKLAQQWLDI 387 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccc--------c---cc-------ccCCC------HHHHHHHHHHHHH
Confidence 457889999999987643 46777765331000 0 00 00000 0012345556666
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-ceEEE
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-S-RTTII 1128 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-g-rTvIv 1128 (1192)
.++.+. -.+.+ ...||||||||++||||++++|++||||||||+||+++.+.+.+.|+++.+ + .|+|+
T Consensus 388 ~~l~~~------~~~~~----~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tvii 457 (490)
T PRK10938 388 LGIDKR------TADAP----FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLF 457 (490)
T ss_pred cCCchh------hccCc----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 665431 12333 346999999999999999999999999999999999999999999998754 3 46999
Q ss_pred EecChhHHHh--cCEEEEEeCCEEEEEc
Q psy13234 1129 VAHRLSTIIH--ADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1129 IAHRLSTI~~--aDrIlVLe~G~IvE~G 1154 (1192)
|||+++.+.. ||+|++|++|+|++.-
T Consensus 458 vsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 458 VSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred EecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999964 7999999999998753
No 331
>PLN03140 ABC transporter G family member; Provisional
Probab=99.98 E-value=1.1e-31 Score=352.70 Aligned_cols=219 Identities=23% Similarity=0.312 Sum_probs=175.9
Q ss_pred ccccccccceeeecC------------CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC--CCce
Q psy13234 895 KIEENMEEDQFGFRK------------GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV--ESGD 960 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~------------~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp--~sGs 960 (1192)
.+. ++|+++..+. ++.+++++| +.+.+|+. +||+||||||||||+++|.|..++ .+|+
T Consensus 867 ~~~--~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs---~~i~~Gel---~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~ 938 (1470)
T PLN03140 867 AMS--FDDVNYFVDMPAEMKEQGVTEDRLQLLREVT---GAFRPGVL---TALMGVSGAGKTTLMDVLAGRKTGGYIEGD 938 (1470)
T ss_pred eEE--EEEEEEEEccCccccccccCcCCceEeeCcE---EEEECCeE---EEEECCCCCCHHHHHHHHcCCCCCCcccce
Confidence 345 8888888742 235788998 99999988 999999999999999999999874 7899
Q ss_pred EEECCeecCCCChHhhcccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcc
Q psy13234 961 IFIDNQNIKTVSQASLRQAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINA 1039 (1192)
Q Consensus 961 I~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~ 1039 (1192)
|.+||.+++ ....|+.+|||+|++.+++ -|++|||.|+.. ++.|...++ +.
T Consensus 939 I~inG~~~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~--------------------lr~~~~~~~-----~~ 990 (1470)
T PLN03140 939 IRISGFPKK---QETFARISGYCEQNDIHSPQVTVRESLIYSAF--------------------LRLPKEVSK-----EE 990 (1470)
T ss_pred EEECCccCC---hHHhhhheEEEccccccCCCCcHHHHHHHHHH--------------------hCCCCCCCH-----HH
Confidence 999998864 3567888999999988777 599999987520 001111000 00
Q ss_pred cHHHHHHHHHHcChHHHHhcCCCCCcccccCCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy13234 1040 SEEEVKEAATSADIHERILSFPDGYDTQVGERG-LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN 1118 (1192)
Q Consensus 1040 sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG-~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~ 1118 (1192)
.++.+.++++..++.+. .|+.||..| ..||||||||++|||||+.+|+||+||||||+||+++...+.+.|+
T Consensus 991 ~~~~v~~vl~~lgL~~~-------~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~ 1063 (1470)
T PLN03140 991 KMMFVDEVMELVELDNL-------KDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1063 (1470)
T ss_pred HHHHHHHHHHHCCChhH-------hCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 12345667777776543 478888655 5799999999999999999999999999999999999999999999
Q ss_pred HHcC-CceEEEEecChhH--HHhcCEEEEEeC-CEEEEEcCH
Q psy13234 1119 RVCA-SRTTIIVAHRLST--IIHADEILVMHA-GEIVERGRH 1156 (1192)
Q Consensus 1119 ~l~~-grTvIvIAHRLST--I~~aDrIlVLe~-G~IvE~Gth 1156 (1192)
++.+ |+|+|+++|+++. ...+|++++|++ |+++..|+.
T Consensus 1064 ~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1064 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 8754 6999999999984 478999999996 899999985
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=1.3e-31 Score=271.41 Aligned_cols=141 Identities=31% Similarity=0.447 Sum_probs=129.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. .+++++++ +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+ +.
T Consensus 3 ~~~l~~~~~~-~~~l~~~~---~~~~~Ge~---~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~ 64 (144)
T cd03221 3 LENLSKTYGG-KLLLKDIS---LTINPGDR---IGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VK 64 (144)
T ss_pred EEEEEEEECC-ceEEEeeE---EEECCCCE---EEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EE
Confidence 7788899865 36889998 99999999 9999999999999999999999999999999994 35
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
++|+||
T Consensus 65 i~~~~~-------------------------------------------------------------------------- 70 (144)
T cd03221 65 IGYFEQ-------------------------------------------------------------------------- 70 (144)
T ss_pred EEEEcc--------------------------------------------------------------------------
Confidence 666655
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh-
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH- 1138 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~- 1138 (1192)
||+|||||++||||++++|++++|||||++||.++.+.+.+.|+++ ++|+|++||+++.+..
T Consensus 71 ---------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~ 133 (144)
T cd03221 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV 133 (144)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh
Confidence 9999999999999999999999999999999999999999999887 5899999999999865
Q ss_pred cCEEEEEeCCE
Q psy13234 1139 ADEILVMHAGE 1149 (1192)
Q Consensus 1139 aDrIlVLe~G~ 1149 (1192)
||+|++|++|+
T Consensus 134 ~d~v~~l~~g~ 144 (144)
T cd03221 134 ATKIIELEDGK 144 (144)
T ss_pred CCEEEEEeCCC
Confidence 89999999985
No 333
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=1.2e-31 Score=352.63 Aligned_cols=216 Identities=19% Similarity=0.225 Sum_probs=170.2
Q ss_pred CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCC----CCCCceEEECCeecCCCChHhhcccEEEEcC
Q psy13234 910 GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY----DVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 985 (1192)
Q Consensus 910 ~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRly----dp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQ 985 (1192)
++.+++++| +.+.+|+. +||+||||||||||+|+|.|.. .|.+|+|.+||+++.+.+ ...|+.++||+|
T Consensus 73 ~~~iL~~vs---~~i~~Ge~---~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q 145 (1394)
T TIGR00956 73 TFDILKPMD---GLIKPGEL---TVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAE 145 (1394)
T ss_pred cceeeeCCE---EEEECCEE---EEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEecc
Confidence 356899999 99999998 9999999999999999999986 578999999999987654 456788999999
Q ss_pred CCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHH-HHHHHHHcChHHHHhcCCCC
Q psy13234 986 DTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE-VKEAATSADIHERILSFPDG 1063 (1192)
Q Consensus 986 Dp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdee-I~~AL~~A~Lhd~I~~LP~G 1063 (1192)
++.+|+ -|++||+.|+.. + +.|........+.+. +++ ...+++..++ .+-
T Consensus 146 ~d~~~~~lTV~E~l~f~~~----------~----------~~~~~~~~~~~~~~~-~~~~~~~~l~~lgL-------~~~ 197 (1394)
T TIGR00956 146 TDVHFPHLTVGETLDFAAR----------C----------KTPQNRPDGVSREEY-AKHIADVYMATYGL-------SHT 197 (1394)
T ss_pred ccccCCCCCHHHHHHHHHH----------h----------CCCCCCCCCCCHHHH-HHHHHHHHHHHcCc-------ccc
Confidence 998887 499999987521 0 001000000000000 111 1234454444 344
Q ss_pred CcccccC-CCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh-HH-Hh
Q psy13234 1064 YDTQVGE-RGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS-TI-IH 1138 (1192)
Q Consensus 1064 yDT~VGE-rG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS-TI-~~ 1138 (1192)
.||.||+ ....||||||||++||||++.+|+|++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ .+ ..
T Consensus 198 ~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l 277 (1394)
T TIGR00956 198 RNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYEL 277 (1394)
T ss_pred cCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh
Confidence 6899986 3557999999999999999999999999999999999999999999999864 799999999974 44 56
Q ss_pred cCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1139 ADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1139 aDrIlVLe~G~IvE~GtheELL 1160 (1192)
+|+|++|++|+++..|+.+++.
T Consensus 278 ~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 278 FDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999874
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=5.9e-31 Score=326.36 Aligned_cols=202 Identities=25% Similarity=0.362 Sum_probs=161.0
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s 975 (1192)
++ ++|++++|+.++++++++| +.+.+|+. ++|+||||||||||+++|.|+.+|++|+|.+++
T Consensus 509 L~--~~~ls~~y~~~~~il~~vs---l~i~~Ge~---i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~---------- 570 (718)
T PLN03073 509 IS--FSDASFGYPGGPLLFKNLN---FGIDLDSR---IAMVGPNGIGKSTILKLISGELQPSSGTVFRSA---------- 570 (718)
T ss_pred EE--EEeeEEEeCCCCeeEeccE---EEEcCCCE---EEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------
Confidence 55 8999999976567899999 99999999 999999999999999999999999999999876
Q ss_pred hcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 976 LRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 976 LR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
+.+|||+||++. ..-++.+|.... .. ..++ ..+++++.++|+..++.+
T Consensus 571 -~~~igyv~Q~~~-~~l~~~~~~~~~-----------~~---------~~~~----------~~~~~~i~~~L~~~gl~~ 618 (718)
T PLN03073 571 -KVRMAVFSQHHV-DGLDLSSNPLLY-----------MM---------RCFP----------GVPEQKLRAHLGSFGVTG 618 (718)
T ss_pred -ceeEEEEecccc-ccCCcchhHHHH-----------HH---------HhcC----------CCCHHHHHHHHHHCCCCh
Confidence 247999999973 233455554211 00 0000 112455666667777753
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhH
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 1135 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLST 1135 (1192)
... + .....||||||||++||||++.+|++|||||||++||.++...+.+.|.+. + .|+|+|||++..
T Consensus 619 ~~~------~----~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~ 686 (718)
T PLN03073 619 NLA------L----QPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHL 686 (718)
T ss_pred HHh------c----CCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHH
Confidence 211 2 224579999999999999999999999999999999999999999999875 3 599999999998
Q ss_pred HHh-cCEEEEEeCCEEE-EEcCHHHH
Q psy13234 1136 IIH-ADEILVMHAGEIV-ERGRHEEL 1159 (1192)
Q Consensus 1136 I~~-aDrIlVLe~G~Iv-E~GtheEL 1159 (1192)
+.. ||+|++|++|+++ ..|++++.
T Consensus 687 i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 687 ISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 874 9999999999998 56887764
No 335
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=4.4e-32 Score=282.68 Aligned_cols=220 Identities=24% Similarity=0.413 Sum_probs=177.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh-hcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s-LR~ 978 (1192)
.+|+..+|.. +++.+++| +.+.+||. |++.||+|+||||.+..+.|+.+|++|+|.+||.||..++... -|-
T Consensus 7 a~~l~K~y~k-r~Vv~~Vs---l~v~~GEi---VGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 7 AENLAKSYKK-RKVVNDVS---LEVNSGEI---VGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred ehhhhHhhCC-eeeeeeee---EEEcCCcE---EEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 5677777854 56889999 99999998 9999999999999999999999999999999999999999754 466
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
-|||+||||.+|.+ |+.|||..--. ..+ .|... ....+++.+.|+.-++...
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE-~~~-------------------~d~~~------~~~~~~l~~LL~ef~i~hl- 132 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLE-IRE-------------------KDLKK------AERKEELDALLEEFHITHL- 132 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHh-hhh-------------------cchhH------HHHHHHHHHHHHHhchHHH-
Confidence 79999999999996 99999963210 000 00000 0122334445555554432
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC-ceEEEEecCh-hH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL-ST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g-rTvIvIAHRL-ST 1135 (1192)
-...|..||||||.|+-|||||..+|+.++||||.|++||.+-..||+.++.+... --+++.-|+- +|
T Consensus 133 ----------r~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt 202 (243)
T COG1137 133 ----------RDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET 202 (243)
T ss_pred ----------hcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH
Confidence 23457899999999999999999999999999999999999999999999988765 4555556774 68
Q ss_pred HHhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1136 IIHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1136 I~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+.-|||.+++.+|+|...|+++|+.++.
T Consensus 203 L~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 203 LDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999998764
No 336
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.9e-31 Score=267.89 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=176.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCe--ecCCCC----h
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ--NIKTVS----Q 973 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~--DI~~i~----~ 973 (1192)
.+++++.|... .++-+|+ +.+++|++ +.+.||||+|||||+|.|-=+--|.+|+..|-|. |.++.+ .
T Consensus 5 v~~in~~yg~~-q~lfdi~---l~~~~get---lvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 5 LNGINCFYGAH-QALFDIT---LDCPEGET---LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred Ecccccccccc-hheeeee---ecCCCCCE---EEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHH
Confidence 78888988653 5788888 99999999 9999999999999999999999999999999875 444443 5
Q ss_pred HhhcccEEEEcCCCcccc-ccHHHHHhccc---cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDTVLFN-NSIKFNIQYAR---INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~---~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
..||+.+|.|.|.-.|.+ -|+-||+-=+. ...+++|-. .+-.+.|+
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~------------------------------~~a~ellk 127 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL------------------------------ARAEKLLK 127 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHH------------------------------HHHHHHHH
Confidence 689999999999999987 59999984110 011222211 12234556
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTII 1128 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIv 1128 (1192)
+-.+.++-.++| ..|||||.||+||||||..+|++|++||||+|||++-..+|.+.|+++.. |-|-++
T Consensus 128 rlrl~~~adr~p-----------lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvi 196 (242)
T COG4161 128 RLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVI 196 (242)
T ss_pred HhccccccccCc-----------eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEE
Confidence 666777666665 57999999999999999999999999999999999999999999998864 589999
Q ss_pred EecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1129 VAHRLSTII-HADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1129 IAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
|||.....+ -|.+++.|++|+|+|.|+++-.-.
T Consensus 197 vthev~va~k~as~vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 197 VTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred EEeehhHHHhhhhheEeeecCeeEeecchhhccC
Confidence 999999875 589999999999999999876543
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=6.6e-31 Score=319.05 Aligned_cols=205 Identities=24% Similarity=0.297 Sum_probs=162.1
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s 975 (1192)
++ ++|++++|+. +++++++| +.+.+|+. ++|+||+|||||||+++|.|+.+|++|+|.+++ ++
T Consensus 325 l~--~~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~------- 387 (556)
T PRK11819 325 IE--AENLSKSFGD-RLLIDDLS---FSLPPGGI---VGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV------- 387 (556)
T ss_pred EE--EEeEEEEECC-eeeeccee---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce-------
Confidence 55 8999999964 46899999 99999998 999999999999999999999999999999954 21
Q ss_pred hcccEEEEcCCC-cccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 976 LRQAIGVVPQDT-VLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 976 LR~~Ig~VPQDp-~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
+||||||++ .++. -|++||+.++..... . ...+++..++++..++
T Consensus 388 ---~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-----------------------~-------~~~~~~~~~~l~~~~l 434 (556)
T PRK11819 388 ---KLAYVDQSRDALDPNKTVWEEISGGLDIIK-----------------------V-------GNREIPSRAYVGRFNF 434 (556)
T ss_pred ---EEEEEeCchhhcCCCCCHHHHHHhhccccc-----------------------c-------cccHHHHHHHHHhCCC
Confidence 599999997 5655 599999987531000 0 0001122234455544
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecCh
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 1133 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRL 1133 (1192)
.+. ..+..+ ..||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++. + .|+|+|||++
T Consensus 435 ~~~------~~~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~ 502 (556)
T PRK11819 435 KGG------DQQKKV----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDR 502 (556)
T ss_pred Chh------HhcCch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCH
Confidence 211 123333 469999999999999999999999999999999999999999999986 3 4999999999
Q ss_pred hHHHh-cCEEEEEeC-CEEEE-EcCHHHHHhc
Q psy13234 1134 STIIH-ADEILVMHA-GEIVE-RGRHEELLER 1162 (1192)
Q Consensus 1134 STI~~-aDrIlVLe~-G~IvE-~GtheELL~~ 1162 (1192)
+.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 503 ~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 503 WFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 98765 999999996 88874 6888877654
No 338
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.6e-31 Score=268.41 Aligned_cols=154 Identities=36% Similarity=0.613 Sum_probs=140.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++++++.|+. ++++++++ +.+.+|+. ++|+|++|||||||+++|.|+++|++|+|.+||.++.+......+++
T Consensus 2 ~~~~~~~~~~-~~~l~~~~---~~i~~g~~---~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~ 74 (157)
T cd00267 2 IENLSFRYGG-RTALDNVS---LTLKAGEI---VALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRR 74 (157)
T ss_pred eEEEEEEeCC-eeeEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhc
Confidence 6788888864 36888888 99999988 99999999999999999999999999999999999988777777778
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
++|+||
T Consensus 75 i~~~~q-------------------------------------------------------------------------- 80 (157)
T cd00267 75 IGYVPQ-------------------------------------------------------------------------- 80 (157)
T ss_pred eEEEee--------------------------------------------------------------------------
Confidence 888877
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHh
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~ 1138 (1192)
||||||||++||||+..+|++++|||||++||.++...+.+.+.+..+ ++|++++||+++.+..
T Consensus 81 ---------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 81 ---------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999999999988755 4899999999999988
Q ss_pred -cCEEEEEeCCE
Q psy13234 1139 -ADEILVMHAGE 1149 (1192)
Q Consensus 1139 -aDrIlVLe~G~ 1149 (1192)
||+|+++++|+
T Consensus 146 ~~d~i~~l~~g~ 157 (157)
T cd00267 146 AADRVIVLKDGK 157 (157)
T ss_pred hCCEEEEEeCcC
Confidence 59999999975
No 339
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.8e-31 Score=272.54 Aligned_cols=204 Identities=24% Similarity=0.403 Sum_probs=165.9
Q ss_pred cccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
.++++.+|+. ..++++++| +.+.+|+. ++++||||||||||++++.||.+|+.|+|.+||..|..-.-
T Consensus 6 ~~~~sl~y~g~~~~~le~vs---L~ia~ge~---vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga----- 74 (259)
T COG4525 6 VSHLSLSYEGKPRSALEDVS---LTIASGEL---VVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA----- 74 (259)
T ss_pred hhheEEecCCcchhhhhccc---eeecCCCE---EEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----
Confidence 5677788875 345889999 89998888 99999999999999999999999999999999998876543
Q ss_pred cEEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 979 AIGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 979 ~Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
.=|+|.|++-|++ -|+.||+.||-. ..+.++=. +...+.|..+++.+
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~------------------------------~~a~q~l~~VgL~~ 124 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRR------------------------------EIAHQMLALVGLEG 124 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHH------------------------------HHHHHHHHHhCccc
Confidence 3589999999999 699999999832 12222211 12233445666654
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecCh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRL 1133 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRL 1133 (1192)
+=. ..--.||||||||+.|||||.-+|+.|+||||.+|||+-|.+++|+.|-++. .++-+++|||..
T Consensus 125 ~~~-----------~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i 193 (259)
T COG4525 125 AEH-----------KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI 193 (259)
T ss_pred ccc-----------cceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 321 2235799999999999999999999999999999999999999999987764 369999999998
Q ss_pred hH-HHhcCEEEEEe--CCEEEEEcC
Q psy13234 1134 ST-IIHADEILVMH--AGEIVERGR 1155 (1192)
Q Consensus 1134 ST-I~~aDrIlVLe--~G~IvE~Gt 1155 (1192)
+. +--|++++||+ .|+|++.=+
T Consensus 194 eEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 194 EEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred HHHHhhhheeEEecCCCceeeEecC
Confidence 75 56899999998 579998643
No 340
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.1e-30 Score=316.74 Aligned_cols=204 Identities=25% Similarity=0.299 Sum_probs=160.4
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s 975 (1192)
++ ++|++++|+. +++++++| +.+.+|+. +||+||||||||||+++|.|+.+|++|+|.+++ ++
T Consensus 323 l~--~~~l~~~~~~-~~~l~~is---l~i~~Ge~---~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~------- 385 (552)
T TIGR03719 323 IE--AENLSKGFGD-KLLIDDLS---FKLPPGGI---VGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV------- 385 (552)
T ss_pred EE--EeeEEEEECC-eeeeccce---EEEcCCCE---EEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce-------
Confidence 55 8999999964 46899999 99999998 999999999999999999999999999999954 21
Q ss_pred hcccEEEEcCCCc-ccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 976 LRQAIGVVPQDTV-LFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 976 LR~~Ig~VPQDp~-LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
+|||+||++. +++ -|++||+.++..... .. ..+.+..++++..++
T Consensus 386 ---~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-----------------------~~-------~~~~~~~~~l~~~~l 432 (552)
T TIGR03719 386 ---KLAYVDQSRDALDPNKTVWEEISGGLDIIQ-----------------------LG-------KREVPSRAYVGRFNF 432 (552)
T ss_pred ---EEEEEeCCccccCCCCcHHHHHHhhccccc-----------------------cC-------cchHHHHHHHHhCCC
Confidence 6999999973 565 599999987532100 00 001122234455444
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecCh
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 1133 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRL 1133 (1192)
.+. -.+.+ ...||||||||++||||++.+|++|||||||++||..+.+.+.+.|++.. .|+|+|||++
T Consensus 433 ~~~------~~~~~----~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~ 500 (552)
T TIGR03719 433 KGS------DQQKK----VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDR 500 (552)
T ss_pred Chh------HhcCc----hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence 211 12333 34699999999999999999999999999999999999999999999873 4999999999
Q ss_pred hHHHh-cCEEEEEeC-CEEEE-EcCHHHHHh
Q psy13234 1134 STIIH-ADEILVMHA-GEIVE-RGRHEELLE 1161 (1192)
Q Consensus 1134 STI~~-aDrIlVLe~-G~IvE-~GtheELL~ 1161 (1192)
+.+.. ||+|++|++ |++.+ .|+.++..+
T Consensus 501 ~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 501 WFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 98865 999999997 58764 477766543
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=321.53 Aligned_cols=197 Identities=24% Similarity=0.349 Sum_probs=159.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. +||+||+|||||||+++|+|+++|++|+|.+++. .+
T Consensus 315 ~~~l~~~y~~-~~il~~is---l~i~~Ge~---~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 376 (638)
T PRK10636 315 MEKVSAGYGD-RIILDSIK---LNLVPGSR---IGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IK 376 (638)
T ss_pred EEeeEEEeCC-eeeeccce---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EE
Confidence 8999999964 56899999 99999998 9999999999999999999999999999999741 26
Q ss_pred EEEEcCCC--cccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDT--VLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp--~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
|||+||++ .+.. .|+.+|+.-..+.. .++++.++|+..++.+.
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~L~~~~l~~~ 422 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARLAPQE----------------------------------LEQKLRDYLGGFGFQGD 422 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHhCchh----------------------------------hHHHHHHHHHHcCCChh
Confidence 99999985 3433 37777764111111 12334444565555211
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI 1136 (1192)
-.+.++ ..||||||||++||||++++|++|||||||++||.++...+.+.|++. + .|+|+|||++..+
T Consensus 423 ------~~~~~~----~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~ 490 (638)
T PRK10636 423 ------KVTEET----RRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLL 490 (638)
T ss_pred ------HhcCch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHH
Confidence 123333 469999999999999999999999999999999999999999999987 3 5999999999988
Q ss_pred H-hcCEEEEEeCCEEE-EEcCHHHHH
Q psy13234 1137 I-HADEILVMHAGEIV-ERGRHEELL 1160 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~Iv-E~GtheELL 1160 (1192)
. .||+|++|++|+++ ..|++++..
T Consensus 491 ~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 491 RSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 6 49999999999998 679998874
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.5e-30 Score=320.38 Aligned_cols=202 Identities=22% Similarity=0.316 Sum_probs=161.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| +.+.+|+. +||+||+|||||||+++|.|+++|++|+|.+ |.++ .
T Consensus 322 ~~~l~~~~~~-~~il~~vs---l~i~~Ge~---~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~ 383 (635)
T PRK11147 322 MENVNYQIDG-KQLVKDFS---AQVQRGDK---IALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------E 383 (635)
T ss_pred EeeeEEEECC-eEEEcCcE---EEEcCCCE---EEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------E
Confidence 8999999964 56899999 99999999 9999999999999999999999999999999 5432 5
Q ss_pred EEEEcCCC-ccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDT-VLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp-~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
|||++|++ .+++. |+.||+.++.+.....+ .+.++.+.++..++.+
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~------------------------------~~~~~~~~l~~~~l~~-- 431 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNG------------------------------RPRHVLGYLQDFLFHP-- 431 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccccccc------------------------------hHHHHHHHHHhcCCCH--
Confidence 99999986 46654 99999986532110000 0122333444444321
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~ 1137 (1192)
+..+++++ .||||||||++||||++.+|++|||||||++||..+...+.+.|++. +.|+|+|||+++.+.
T Consensus 432 ----~~~~~~~~----~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 432 ----KRAMTPVK----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVD 501 (635)
T ss_pred ----HHHhChhh----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHH
Confidence 12344444 69999999999999999999999999999999999999999999876 469999999999885
Q ss_pred -hcCEEEEEe-CCEEEEE-cCHHHHHh
Q psy13234 1138 -HADEILVMH-AGEIVER-GRHEELLE 1161 (1192)
Q Consensus 1138 -~aDrIlVLe-~G~IvE~-GtheELL~ 1161 (1192)
-||+|++|+ +|++.++ |++++-++
T Consensus 502 ~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 502 NTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 599999998 8999874 78887643
No 343
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=8.3e-31 Score=302.55 Aligned_cols=207 Identities=28% Similarity=0.490 Sum_probs=172.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-hHhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~-~~sLR~ 978 (1192)
+++++..|+ +....+++| +.+.+|+. -|+.|++|+|||||++.|+|+|+|++|+|++||+.++--+ .+..|.
T Consensus 7 ~~~itK~f~-~~~And~V~---l~v~~GeI---HaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 7 MRGITKRFP-GVVANDDVS---LSVKKGEI---HALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred EeccEEEcC-CEEecCcee---eeecCCcE---EEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 788889998 566788998 99999998 9999999999999999999999999999999999987655 577888
Q ss_pred cEEEEcCCCccccc-cHHHHHhccccCC-----CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYARINA-----SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~~~a-----sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
-||.|.|...|++. |+.|||.+|.+.. +..+. .+++.+..++-|
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~------------------------------~~~i~~l~~~yG 129 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA------------------------------RARIKELSERYG 129 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHH------------------------------HHHHHHHHHHhC
Confidence 99999999999996 9999999987531 11111 122222222222
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEec
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAH 1131 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAH 1131 (1192)
||-..|..|+ .||-|||||+-|-+|||++|+|||||||||-|-++-.+.+.+.++++. +|+|+|+|||
T Consensus 130 -------l~vdp~~~V~----dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITH 198 (501)
T COG3845 130 -------LPVDPDAKVA----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198 (501)
T ss_pred -------CCCCccceee----cCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 2334455555 599999999999999999999999999999999999999999998875 4699999999
Q ss_pred ChhHHHh-cCEEEEEeCCEEEEEc
Q psy13234 1132 RLSTIIH-ADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1132 RLSTI~~-aDrIlVLe~G~IvE~G 1154 (1192)
+|..++. |||+-||.+|+++..-
T Consensus 199 KL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 199 KLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred cHHHHHHhhCeeEEEeCCeEEeee
Confidence 9998876 9999999999987543
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.2e-30 Score=273.77 Aligned_cols=161 Identities=25% Similarity=0.263 Sum_probs=133.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
.+|++++|.. +.++++ + +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||++
T Consensus 3 ~~~l~~~~~~-~~~l~~-~---~~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------ 62 (177)
T cd03222 3 YPDCVKRYGV-FFLLVE-L---GVVKEGEV---IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------ 62 (177)
T ss_pred CCCeEEEECC-EEEEcc-C---cEECCCCE---EEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------
Confidence 3567788854 445555 3 67777777 99999999999999999999999999999999963
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
++|+||++ .
T Consensus 63 i~~~~q~~-------------------------------------------------------------~---------- 71 (177)
T cd03222 63 PVYKPQYI-------------------------------------------------------------D---------- 71 (177)
T ss_pred EEEEcccC-------------------------------------------------------------C----------
Confidence 77777621 1
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHH
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~ 1137 (1192)
||||||||++||||++.+|++++||||||+||.++.+.+.+.+++..+ ++|+|+|||+++.+.
T Consensus 72 ---------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 72 ---------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 999999999999999999999999999999999999999999988743 389999999999987
Q ss_pred -hcCEEEEEeCCEEEEE--cCHHHHHhcCcHH
Q psy13234 1138 -HADEILVMHAGEIVER--GRHEELLERNGVY 1166 (1192)
Q Consensus 1138 -~aDrIlVLe~G~IvE~--GtheELL~~~G~Y 1166 (1192)
.||+|++|+++-.+.. |.+.--.+....|
T Consensus 137 ~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 168 (177)
T cd03222 137 YLSDRIHVFEGEPGVYGIASQPKGTREGINRF 168 (177)
T ss_pred HhCCEEEEEcCCCccceeccCCcchhHHHHHH
Confidence 5999999998866532 5555444443334
No 345
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=7e-31 Score=345.02 Aligned_cols=230 Identities=21% Similarity=0.319 Sum_probs=171.5
Q ss_pred CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCeecCCCChHhhcccEEEEcCC
Q psy13234 910 GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQNIKTVSQASLRQAIGVVPQD 986 (1192)
Q Consensus 910 ~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~---sGsI~IDG~DI~~i~~~sLR~~Ig~VPQD 986 (1192)
++.+++++| +.+++|+. ++|+||||||||||+++|.|..+|+ +|+|.+||+++.+.. .|+.++||+|+
T Consensus 177 ~~~IL~~vs---~~i~~Ge~---~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~ 247 (1470)
T PLN03140 177 KLTILKDAS---GIIKPSRM---TLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQN 247 (1470)
T ss_pred cceeccCCe---EEEeCCeE---EEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEeccc
Confidence 456899999 99999999 9999999999999999999999998 999999999987654 37889999999
Q ss_pred Ccccc-ccHHHHHhcccc--CCC-H----HHHHHHhhhhhhhhhhccCCCCCchhhhhh----cc-cHHHHHHHHHHcCh
Q psy13234 987 TVLFN-NSIKFNIQYARI--NAS-E----EEVKEAATSADIHERILSFPDGYDTQYARI----NA-SEEEVKEAATSADI 1053 (1192)
Q Consensus 987 p~LFn-GTIreNI~~G~~--~as-d----EeV~eAa~~a~lh~~i~~~pd~~~~~~~~~----~~-sdeeI~~AL~~A~L 1053 (1192)
+.+|. -|++||+.|+.. ... . +++.+..+.+++ .|+.-.+..+.. .. .+..+..+++..
T Consensus 248 d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~l-- 319 (1470)
T PLN03140 248 DVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGI------FPEAEVDLFMKATAMEGVKSSLITDYTLKIL-- 319 (1470)
T ss_pred ccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccC------CCchhhHHHHHHhhhhcchhhHHHHHHHHHc--
Confidence 88876 599999987521 000 0 000000000000 000000000000 00 001122233333
Q ss_pred HHHHhcCCCCCcccccCCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q psy13234 1054 HERILSFPDGYDTQVGERG-LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 1130 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG-~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIA 1130 (1192)
.+++-.||.||+.. ..||||||||++||||++.+|++++|||||++||+.+...+.+.|++..+ ++|+|+++
T Consensus 320 -----GL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~ 394 (1470)
T PLN03140 320 -----GLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSL 394 (1470)
T ss_pred -----CCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34556799998753 57999999999999999999999999999999999999999999998853 78999999
Q ss_pred cCh--hHHHhcCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1131 HRL--STIIHADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1131 HRL--STI~~aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
|++ ++...+|+|++|++|+++.+|+.+|+++
T Consensus 395 Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 395 LQPAPETFDLFDDIILLSEGQIVYQGPRDHILE 427 (1470)
T ss_pred cCCCHHHHHHhheEEEeeCceEEEeCCHHHHHH
Confidence 997 3567899999999999999999998863
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=2.3e-30 Score=315.56 Aligned_cols=192 Identities=23% Similarity=0.321 Sum_probs=156.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+++.|.. ..+++++ +.+.+|+. +||+||+|||||||+++|.|+.+|++|+|.++ .+
T Consensus 343 ~~~ls~~~~~--~~l~~~s---~~i~~Gei---v~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~ 401 (590)
T PRK13409 343 YPDLTKKLGD--FSLEVEG---GEIYEGEV---IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LK 401 (590)
T ss_pred EcceEEEECC--EEEEecc---eEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------ee
Confidence 8889998854 2477777 88888888 99999999999999999999999999999986 15
Q ss_pred EEEEcCCCcc-ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVL-FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~L-FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
|+|+||++.+ ++.|++||+.++....+. +..+.++++..++.+..
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~---------------------------------~~~~~~~L~~l~l~~~~- 447 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDLGS---------------------------------SYYKSEIIKPLQLERLL- 447 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhcCh---------------------------------HHHHHHHHHHCCCHHHH-
Confidence 9999999875 567999999865311110 11234455776765432
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI 1136 (1192)
|.++ ..||||||||++||||++++|+||||||||++||.++...+.+.|+++.+ ++|+|+|||++..+
T Consensus 448 ------~~~~----~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~ 517 (590)
T PRK13409 448 ------DKNV----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMI 517 (590)
T ss_pred ------hCCc----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 3333 36999999999999999999999999999999999999999999998754 68999999999987
Q ss_pred H-hcCEEEEEeCCEEEEEcCHH
Q psy13234 1137 I-HADEILVMHAGEIVERGRHE 1157 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~IvE~Gthe 1157 (1192)
. -||+|++|++ ++...|+..
T Consensus 518 ~~~aDrvivl~~-~~~~~g~~~ 538 (590)
T PRK13409 518 DYISDRLMVFEG-EPGKHGHAS 538 (590)
T ss_pred HHhCCEEEEEcC-cceeeeecC
Confidence 6 5999999964 888777633
No 347
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.9e-30 Score=271.86 Aligned_cols=160 Identities=23% Similarity=0.313 Sum_probs=130.5
Q ss_pred CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccc
Q psy13234 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990 (1192)
Q Consensus 911 ~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LF 990 (1192)
+++++++| +++.+|+. ++|+||||||||||+++++ +++|+|.++|.. ... -|+.++|++|
T Consensus 8 ~~~l~~is---l~i~~G~~---~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----- 67 (176)
T cd03238 8 VHNLQNLD---VSIPLNVL---VVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----- 67 (176)
T ss_pred eeeecceE---EEEcCCCE---EEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----
Confidence 46788888 99999999 9999999999999999996 369999999862 222 2456889888
Q ss_pred cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccC
Q psy13234 991 NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGE 1070 (1192)
Q Consensus 991 nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGE 1070 (1192)
. +++ +..++.+ . ...+
T Consensus 68 ----~----------------~~l----------------------------------~~~~L~~---------~-~~~~ 83 (176)
T cd03238 68 ----L----------------QFL----------------------------------IDVGLGY---------L-TLGQ 83 (176)
T ss_pred ----H----------------HHH----------------------------------HHcCCCc---------c-ccCC
Confidence 1 112 3333211 0 1345
Q ss_pred CCCCCChHHHHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEEEEeC
Q psy13234 1071 RGLKLSGGEKQRVAIARTLLKA--PQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVMHA 1147 (1192)
Q Consensus 1071 rG~~LSGGQKQRIALARALLrd--P~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIlVLe~ 1147 (1192)
....||||||||++||||++++ |++++|||||++||.++.+.+.+.|++.. .++|+|+|||+++.+..||+|++|++
T Consensus 84 ~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~ 163 (176)
T cd03238 84 KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGP 163 (176)
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECC
Confidence 5678999999999999999999 99999999999999999999999998876 47999999999999999999999965
Q ss_pred ------CEEEEEc
Q psy13234 1148 ------GEIVERG 1154 (1192)
Q Consensus 1148 ------G~IvE~G 1154 (1192)
|++||.|
T Consensus 164 g~~~~~~~~~~~~ 176 (176)
T cd03238 164 GSGKSGGKVVFSG 176 (176)
T ss_pred CCCCCCcEEEecC
Confidence 5667654
No 348
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.4e-30 Score=269.03 Aligned_cols=226 Identities=23% Similarity=0.407 Sum_probs=187.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++.+|.. +.+++++| ..+++|+- ++|+||+|+|||||+..+.|+.++++|+|.|||.|+.+++-+.|-+.
T Consensus 4 i~nv~K~y~~-~~vl~~is---l~i~~g~i---Ts~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~ 76 (252)
T COG4604 4 IENVSKSYGT-KVVLDDVS---LDIPKGGI---TSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK 76 (252)
T ss_pred ehhhhHhhCC-EEeeccce---eeecCCce---eEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHH
Confidence 7788888864 57889999 99999999 99999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++++-|+..+-. -||||=..|||- ||.+.... ..+...|.+|++--++.+.-.
T Consensus 77 lSILkQ~N~i~~rlTV~dLv~FGRf-------------------------PYSqGRlt-~eD~~~I~~aieyl~L~~l~d 130 (252)
T COG4604 77 LSILKQENHINSRLTVRDLVGFGRF-------------------------PYSQGRLT-KEDRRIINEAIEYLHLEDLSD 130 (252)
T ss_pred HHHHHhhchhhheeEHHHHhhcCCC-------------------------cccCCCCc-hHHHHHHHHHHHHhcccchHH
Confidence 999999998765 599999999862 22221110 112233555666665554322
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI 1136 (1192)
+ |= ..||||||||-=||-.+..|.+-++||||..|||-+-...+++.|+++.+ +||+++|-|+.+..
T Consensus 131 r----yL-------d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfA 199 (252)
T COG4604 131 R----YL-------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA 199 (252)
T ss_pred H----hH-------HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHH
Confidence 2 21 25999999999999999999999999999999999999999999987765 59999999999988
Q ss_pred Hh-cCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1137 IH-ADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1137 ~~-aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
.. +|+|+-|+||+++.+|+++|+++.+ ...++|
T Consensus 200 S~YsD~IVAlK~G~vv~~G~~~eii~~~-~L~eiy 233 (252)
T COG4604 200 SCYSDHIVALKNGKVVKQGSPDEIIQPE-ILSEIY 233 (252)
T ss_pred HhhhhheeeecCCEEEecCCHHHhcCHH-HHHHHh
Confidence 64 8999999999999999999999753 344444
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.4e-29 Score=308.39 Aligned_cols=223 Identities=19% Similarity=0.237 Sum_probs=164.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|.. +.+++++| |.+.+|+. +|||||+|||||||+|+|.|+++|++|+|.++|.+ .
T Consensus 4 i~nls~~~g~-~~~l~~vs---~~i~~Ge~---v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~ 65 (638)
T PRK10636 4 FSSLQIRRGV-RVLLDNAT---ATINPGQK---VGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------Q 65 (638)
T ss_pred EEEEEEEeCC-ceeecCcE---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------E
Confidence 7899999954 56899999 99999999 99999999999999999999999999999999852 4
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCH--HHHHHHh------hhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASE--EEVKEAA------TSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asd--EeV~eAa------~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
|+|++|++..+..|+.+++.-+...... .++..+. ....++... +..+++ ..++++.++|+..
T Consensus 66 i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~L~~l 136 (638)
T PRK10636 66 LAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKL-DAIDAW--------TIRSRAASLLHGL 136 (638)
T ss_pred EEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH-HhcCCc--------chHHHHHHHHHhC
Confidence 9999998766667777766421100000 0000000 000000000 000011 1234566666666
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 1131 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAH 1131 (1192)
++.+ +-.+.+++ .||||||||++|||||+.+|++|||||||++||.++...+.+.|++. +.|+|+|||
T Consensus 137 gl~~------~~~~~~~~----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsH 204 (638)
T PRK10636 137 GFSN------EQLERPVS----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISH 204 (638)
T ss_pred CCCc------hhhcCchh----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeC
Confidence 5531 11244443 69999999999999999999999999999999999999999999875 579999999
Q ss_pred ChhHHH-hcCEEEEEeCCEEEE-EcCHHHHHh
Q psy13234 1132 RLSTII-HADEILVMHAGEIVE-RGRHEELLE 1161 (1192)
Q Consensus 1132 RLSTI~-~aDrIlVLe~G~IvE-~GtheELL~ 1161 (1192)
++..+. .||+|++|++|++.+ .|++++...
T Consensus 205 d~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 205 DRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred CHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 999886 589999999999975 688876653
No 350
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=5.9e-30 Score=312.01 Aligned_cols=192 Identities=21% Similarity=0.281 Sum_probs=152.5
Q ss_pred cceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCeecCC
Q psy13234 902 EDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIF-----------IDNQNIKT 970 (1192)
Q Consensus 902 nVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~-----------IDG~DI~~ 970 (1192)
+++.+|..+..+|++++ .+.+|+. +||+||+|||||||+|+|.|+++|++|+|. ++|.|+.+
T Consensus 78 ~~~~~yg~~~~~L~~l~----~i~~Gev---~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP----IPKEGKV---TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred CceEEecCCceeEecCC----cCCCCCE---EEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHH
Confidence 47888976555788885 4666666 999999999999999999999999999998 99999876
Q ss_pred CChH--hhccc----EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 971 VSQA--SLRQA----IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 971 i~~~--sLR~~----Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
+..+ ..+.+ +.+++|.|.+|.+|++||+...+ . .+++
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~----------------------------------~~~~ 193 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---E----------------------------------RGKL 193 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhh---H----------------------------------HHHH
Confidence 5321 11223 44556677788899999996421 1 1223
Q ss_pred HHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc
Q psy13234 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR 1124 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~gr 1124 (1192)
.++++..++.+. .|+.++ +||||||||++||||++++|++|+||||||+||.++...+.+.|+++.+++
T Consensus 194 ~~~l~~l~l~~~-------~~~~~~----~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~ 262 (590)
T PRK13409 194 DEVVERLGLENI-------LDRDIS----ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGK 262 (590)
T ss_pred HHHHHHcCCchh-------hcCChh----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
Confidence 344466555432 344444 699999999999999999999999999999999999999999999886689
Q ss_pred eEEEEecChhHHHh-cCEEEEEeCC
Q psy13234 1125 TTIIVAHRLSTIIH-ADEILVMHAG 1148 (1192)
Q Consensus 1125 TvIvIAHRLSTI~~-aDrIlVLe~G 1148 (1192)
|+|+|+|+++.+.. ||+|++|++|
T Consensus 263 tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 263 YVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999998864 8999999873
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=1.1e-28 Score=304.05 Aligned_cols=218 Identities=22% Similarity=0.331 Sum_probs=162.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+. +++++++| |.+.+|+. +|||||||||||||+++|.|+++|++|+|.++|.. .
T Consensus 6 i~~ls~~~~~-~~il~~is---~~i~~Ge~---v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~ 67 (635)
T PRK11147 6 IHGAWLSFSD-APLLDNAE---LHIEDNER---VCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------I 67 (635)
T ss_pred EeeEEEEeCC-ceeEeCcE---EEECCCCE---EEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------E
Confidence 8899999964 57899999 99999999 99999999999999999999999999999998731 3
Q ss_pred EEEEcCCCcc-ccccHHHHHhccccCC-----------------CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccH
Q psy13234 980 IGVVPQDTVL-FNNSIKFNIQYARINA-----------------SEEEVKEAATSADIHERILSFPDGYDTQYARINASE 1041 (1192)
Q Consensus 980 Ig~VPQDp~L-FnGTIreNI~~G~~~a-----------------sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sd 1041 (1192)
++++||++.. ..+|+.+++..+.... +.++..... ..++..+ ...+++ ..+
T Consensus 68 ~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~-~~~~~~--------~~~ 136 (635)
T PRK11147 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNEL--AKLQEQL-DHHNLW--------QLE 136 (635)
T ss_pred EEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHH--HHHHHHH-HhcCcc--------cHH
Confidence 7889997643 2368888764321000 000000000 0000000 000111 123
Q ss_pred HHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q psy13234 1042 EEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC 1121 (1192)
Q Consensus 1042 eeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~ 1121 (1192)
+++.++++..++. .+.++ ..||||||||++|||||+.+|+||||||||++||.++.+.+.+.|++.
T Consensus 137 ~~~~~~l~~lgl~---------~~~~~----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~- 202 (635)
T PRK11147 137 NRINEVLAQLGLD---------PDAAL----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF- 202 (635)
T ss_pred HHHHHHHHhCCCC---------CCCch----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-
Confidence 4566666665542 14444 469999999999999999999999999999999999999999999887
Q ss_pred CCceEEEEecChhHHHh-cCEEEEEeCCEEEE-EcCHHHHHh
Q psy13234 1122 ASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE-RGRHEELLE 1161 (1192)
Q Consensus 1122 ~grTvIvIAHRLSTI~~-aDrIlVLe~G~IvE-~GtheELL~ 1161 (1192)
+.|+|+|||++..+.. ||+|++|++|+++. .|++++.++
T Consensus 203 -~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 203 -QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred -CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence 3699999999998865 89999999999986 588887654
No 352
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=266.38 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=172.7
Q ss_pred CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcc
Q psy13234 910 GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 989 (1192)
Q Consensus 910 ~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~L 989 (1192)
.+++++++| +.+++|+. +-|+|.+|||||||++.+.|-.+|++|.|+|||+|+..++.+.--..++-|.|||..
T Consensus 18 ek~~l~~~s---L~I~~g~F---vtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~ 91 (263)
T COG1101 18 EKRALNGLS---LEIAEGDF---VTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLA 91 (263)
T ss_pred HHHHHhcCc---eeecCCce---EEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhh
Confidence 467888888 99998888 999999999999999999999999999999999999999999999999999999973
Q ss_pred --cc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcc
Q psy13234 990 --FN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDT 1066 (1192)
Q Consensus 990 --Fn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT 1066 (1192)
+. -||.||+.++... -...++..... ++ ++..-.+.+..+|.|++-
T Consensus 92 gt~~~lTieENl~la~~R--------------------g~~rgl~~~ln------~~-----~~~~f~~~l~~l~lgLen 140 (263)
T COG1101 92 GTAPELTIEENLALAESR--------------------GKKRGLSSALN------ER-----RRSSFRERLARLGLGLEN 140 (263)
T ss_pred CCcccccHHHHHHHHHhc--------------------Ccccccchhhh------HH-----HHHHHHHHHhhcccchhh
Confidence 33 5999999865311 00111111100 00 455566778889999998
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChhHH-HhcCEEE
Q psy13234 1067 QVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLSTI-IHADEIL 1143 (1192)
Q Consensus 1067 ~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLSTI-~~aDrIl 1143 (1192)
.++.+-..|||||||=++|+-|.++.|+||+|||-|+||||.+...|.+.=++.- .+-|+++|||.+... .--+|.+
T Consensus 141 rL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlI 220 (263)
T COG1101 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLI 220 (263)
T ss_pred hhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEE
Confidence 8888888999999999999999999999999999999999999999987765543 347999999999865 5569999
Q ss_pred EEeCCEEEEE
Q psy13234 1144 VMHAGEIVER 1153 (1192)
Q Consensus 1144 VLe~G~IvE~ 1153 (1192)
+|++|+|+-.
T Consensus 221 mLh~G~IvlD 230 (263)
T COG1101 221 MLHSGKIVLD 230 (263)
T ss_pred EEeCCeEEEE
Confidence 9999999865
No 353
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=9.2e-29 Score=254.13 Aligned_cols=224 Identities=27% Similarity=0.426 Sum_probs=176.5
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCc-ccc
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV-LFN 991 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~-LFn 991 (1192)
..+.+| |+..+|++ +||+|.+|||||||+|.|.|+.+|++|+|++||+.+.-=+-..-.++|-.|.|||- =||
T Consensus 28 AV~~vS---FtL~~~QT---laiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~N 101 (267)
T COG4167 28 AVKPVS---FTLREGQT---LAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101 (267)
T ss_pred cccceE---EEecCCcE---EEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccC
Confidence 445567 89999998 99999999999999999999999999999999999987777777789999999994 222
Q ss_pred ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCC
Q psy13234 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGER 1071 (1192)
Q Consensus 992 GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGEr 1071 (1192)
=|-||. . |++.|-...+.++ .+...++|.+-|+.+|+ +||--+.-
T Consensus 102 --PRl~iG--q--------------------iLd~PL~l~T~~~-~~~R~~~i~~TL~~VGL------~Pdhan~~---- 146 (267)
T COG4167 102 --PRLRIG--Q--------------------ILDFPLRLNTDLE-PEQRRKQIFETLRMVGL------LPDHANYY---- 146 (267)
T ss_pred --hhhhhh--h--------------------HhcchhhhcccCC-hHHHHHHHHHHHHHhcc------Cccccccc----
Confidence 133442 1 1112222222111 13456778888899888 45532222
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCceEEEEecChhHHHh-cCEEEEEeCC
Q psy13234 1072 GLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASRTTIIVAHRLSTIIH-ADEILVMHAG 1148 (1192)
Q Consensus 1072 G~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l--~~grTvIvIAHRLSTI~~-aDrIlVLe~G 1148 (1192)
-..||-|||||+|+||||.-+|+|+|-|||..+||.....++.+...++ ..|-.-|.|+.++-.|+| +|+|+||++|
T Consensus 147 ~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG 226 (267)
T COG4167 147 PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEG 226 (267)
T ss_pred hhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecC
Confidence 3479999999999999999999999999999999999999998876544 347889999999999987 8999999999
Q ss_pred EEEEEcCHHHHHhc--CcHHHHHHHHhhccC
Q psy13234 1149 EIVERGRHEELLER--NGVYASMWIQQNTKQ 1177 (1192)
Q Consensus 1149 ~IvE~GtheELL~~--~G~Ya~L~~~Q~~~~ 1177 (1192)
+++|+|+..|+++. ...-++|.++.-.+.
T Consensus 227 ~vvE~G~t~~v~a~P~~~~TkRlieShFg~~ 257 (267)
T COG4167 227 EVVERGSTADVLASPLHELTKRLIESHFGEA 257 (267)
T ss_pred ceeecCChhhhhcCCccHHHHHHHHHHhccc
Confidence 99999999999975 356677777665443
No 354
>KOG0061|consensus
Probab=99.96 E-value=1e-28 Score=302.14 Aligned_cols=221 Identities=30% Similarity=0.466 Sum_probs=182.8
Q ss_pred cccceeeecCC----CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC---CCceEEECCeecCCCC
Q psy13234 900 MEEDQFGFRKG----KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV---ESGDIFIDNQNIKTVS 972 (1192)
Q Consensus 900 fenVsFsY~~~----~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp---~sGsI~IDG~DI~~i~ 972 (1192)
++++...-+.+ +.++++|| ...+||+- .||.||||||||||+++|.|-.+. .+|+|++||+ ..+
T Consensus 28 ~~~~~~~~~~~~~~~k~iL~~vs---g~~~~Gel---~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~ 98 (613)
T KOG0061|consen 28 FRNLTLSSKEKSKKTKTILKGVS---GTAKPGEL---LAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRD 98 (613)
T ss_pred EEEEEEEecCCCCccceeeeCcE---EEEecCeE---EEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCc
Confidence 66666665443 67899999 99999998 999999999999999999999975 7899999994 456
Q ss_pred hHhhcccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 973 QASLRQAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
.+.+|+..|||+||..+++ -||+|++.|.. .++.|...++ +.-+++|.++++.-
T Consensus 99 ~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A--------------------~lrlp~~~~~-----~~k~~~V~~vi~~L 153 (613)
T KOG0061|consen 99 SRSFRKISGYVQQDDVLLPTLTVRETLRFSA--------------------LLRLPSSLSK-----EEKRERVEEVISEL 153 (613)
T ss_pred hhhhhheeEEEcccccccccccHHHHHHHHH--------------------HhcCCCCCCH-----HHHHHHHHHHHHHc
Confidence 7889999999999999998 59999998742 1233433221 12245666676666
Q ss_pred ChHHHHhcCCCCCcccccC-CCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEE
Q psy13234 1052 DIHERILSFPDGYDTQVGE-RGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIV 1129 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGE-rG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvI 1129 (1192)
++.+ + =||.||. ++..+|||||+|++||--++.||+||+||||||+||+.+..++.+.|+++.+ |||||+.
T Consensus 154 gL~~-~------~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~t 226 (613)
T KOG0061|consen 154 GLEK-C------ADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICT 226 (613)
T ss_pred CChh-h------ccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEE
Confidence 6652 2 4888874 3457999999999999999999999999999999999999999999998754 6999999
Q ss_pred ecChhH--HHhcCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1130 AHRLST--IIHADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1130 AHRLST--I~~aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
=|+++. ..-.|++++|.+|+++-.|+.+++.+
T Consensus 227 IHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 227 IHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred EeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 999984 46799999999999999999988764
No 355
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=3.4e-28 Score=273.63 Aligned_cols=234 Identities=27% Similarity=0.410 Sum_probs=184.6
Q ss_pred cccceeeecC---CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCC
Q psy13234 900 MEEDQFGFRK---GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTV 971 (1192)
Q Consensus 900 fenVsFsY~~---~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-----~sGsI~IDG~DI~~i 971 (1192)
.+|++..|.. ...+.++|| |.+.+||+ +|+||+||||||--++.++|+.+- .+|+|..||.|+-..
T Consensus 9 v~nLsV~f~~~~~~~~aVk~is---f~i~~GEt---lAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 9 IRNLSVAFHQEGGTVEAVKGIS---FDIEAGET---LALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred eeccEEEEecCCcceEeeccce---eeecCCCE---EEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 6676666642 356788999 99999999 999999999999999999999875 469999999999999
Q ss_pred ChHhhcc----cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 972 SQASLRQ----AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 972 ~~~sLR~----~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
+...+|+ +|+.|.|||.-=-..+ ++| .+++.|+. .+|. +.. ...-.+++.+.
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl-~tI--------g~Qi~E~l---~~Hr-------g~~-----~~~Ar~r~lel 138 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPL-HTI--------GKQLAEVL---RLHR-------GLS-----RAAARARALEL 138 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcH-hHH--------HHHHHHHH---HHHh-------ccc-----HHHHHHHHHHH
Confidence 9888876 8999999997321111 112 23444544 1221 111 12346778888
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--Cce
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRT 1125 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grT 1125 (1192)
|+.+|+.+-=.. +..=...||||||||+-||-|+..+|++||-||||.|||....++|.+.|+++.+ |..
T Consensus 139 L~~VgI~~p~~r--------l~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa 210 (534)
T COG4172 139 LELVGIPEPEKR--------LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMA 210 (534)
T ss_pred HHHcCCCchhhh--------hhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcE
Confidence 899988653222 1222357999999999999999999999999999999999999999999987754 589
Q ss_pred EEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHHHH
Q psy13234 1126 TIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER-NGVYASMWI 1171 (1192)
Q Consensus 1126 vIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L~~ 1171 (1192)
+++|||+|+.++. ||||.||.+|+|+|.|+-++|.+. ...|.++.-
T Consensus 211 ~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll 258 (534)
T COG4172 211 ILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLL 258 (534)
T ss_pred EEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHHHHH
Confidence 9999999999975 899999999999999999999975 466766554
No 356
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=2.3e-29 Score=249.88 Aligned_cols=136 Identities=37% Similarity=0.622 Sum_probs=119.7
Q ss_pred cccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcccccc
Q psy13234 914 RDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 993 (1192)
Q Consensus 914 L~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGT 993 (1192)
|++++ +.+.+|+. ++|+|++|||||||+++|.|.++|++|+|.+||.++.+.+....|+.++|+||++.+|++.
T Consensus 1 L~~v~---~~i~~g~~---~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 74 (137)
T PF00005_consen 1 LKNVS---LEIKPGEI---VAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGL 74 (137)
T ss_dssp EEEEE---EEEETTSE---EEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTS
T ss_pred CCceE---EEEcCCCE---EEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 45667 88999988 9999999999999999999999999999999999999999999999999999999999976
Q ss_pred -HHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCC
Q psy13234 994 -IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERG 1072 (1192)
Q Consensus 994 -IreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG 1072 (1192)
++||. .+++ +.++++..++.+ ..++.++.+.
T Consensus 75 tv~~~~-------~~~~----------------------------------~~~~l~~l~~~~-------~~~~~~~~~~ 106 (137)
T PF00005_consen 75 TVRENE-------SDER----------------------------------IEEVLKKLGLED-------LLDRKIGQRA 106 (137)
T ss_dssp BHHHHH-------HHHH----------------------------------HHHHHHHTTHGG-------GTGSBGTSCG
T ss_pred cccccc-------cccc----------------------------------cccccccccccc-------cccccccccc
Confidence 99992 2233 344446666554 3578888888
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCC
Q psy13234 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLrdP~ILLLDEATS 1103 (1192)
..||||||||++||||++++|+++|||||||
T Consensus 107 ~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 107 SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999999999999999997
No 357
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=2.8e-28 Score=302.61 Aligned_cols=231 Identities=20% Similarity=0.251 Sum_probs=167.7
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCC---CCCCceEEECCeecCCC
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY---DVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRly---dp~sGsI~IDG~DI~~i 971 (1192)
.+. ++|++++|+. +++++++| +.+.+|+. +|||||||||||||+++|.|.. .|.+|+|...++++..-
T Consensus 177 ~I~--i~nls~~y~~-~~ll~~is---l~i~~Ge~---~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~ 247 (718)
T PLN03073 177 DIH--MENFSISVGG-RDLIVDAS---VTLAFGRH---YGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGD 247 (718)
T ss_pred eEE--EceEEEEeCC-CEEEECCE---EEECCCCE---EEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCC
Confidence 355 8999999964 56999999 99999999 9999999999999999999864 57889998655543211
Q ss_pred --Ch------------HhhcccEEEEcCCCccccccHHHHHhccc-cCCCHH----HHHHHhhhhhhhhhhccCCCCCch
Q psy13234 972 --SQ------------ASLRQAIGVVPQDTVLFNNSIKFNIQYAR-INASEE----EVKEAATSADIHERILSFPDGYDT 1032 (1192)
Q Consensus 972 --~~------------~sLR~~Ig~VPQDp~LFnGTIreNI~~G~-~~asdE----eV~eAa~~a~lh~~i~~~pd~~~~ 1032 (1192)
+. ..+++.+++++|+|.+...+..+|..... ...+++ ++.++....++. +.|
T Consensus 248 ~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-------~~~-- 318 (718)
T PLN03073 248 DTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELI-------DAY-- 318 (718)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhc-------Ccc--
Confidence 11 12355678888887765555555542210 011222 233333111111 111
Q ss_pred hhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH
Q psy13234 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112 (1192)
Q Consensus 1033 ~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~ 1112 (1192)
..++++.++|...++.+.. .+.++ ..||||||||++|||||+.+|++|||||||++||.++...
T Consensus 319 ------~~~~r~~~~L~~lgl~~~~------~~~~~----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~ 382 (718)
T PLN03073 319 ------TAEARAASILAGLSFTPEM------QVKAT----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLW 382 (718)
T ss_pred ------hHHHHHHHHHHHCCCChHH------HhCch----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 1245666677666663211 23344 3699999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEecChhHHHh-cCEEEEEeCCEEE-EEcCHHHHHh
Q psy13234 1113 IQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIV-ERGRHEELLE 1161 (1192)
Q Consensus 1113 Iq~aL~~l~~grTvIvIAHRLSTI~~-aDrIlVLe~G~Iv-E~GtheELL~ 1161 (1192)
+.+.|++. ++|+|+|||++..+.. ||+|++|++|++. ..|++++..+
T Consensus 383 l~~~L~~~--~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 383 LETYLLKW--PKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999886 6899999999999876 9999999999997 5677765543
No 358
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.3e-27 Score=255.20 Aligned_cols=217 Identities=23% Similarity=0.316 Sum_probs=166.6
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh-H
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-A 974 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~-~ 974 (1192)
++ ++|+++.|. +++++++|| -.+.+|+. -+|+||+|||||||++++.+.+.|++|.+.+-|+...+.+. .
T Consensus 32 i~--l~~v~v~r~-gk~iL~~is---W~V~~ge~---W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~ 102 (257)
T COG1119 32 IE--LKNVSVRRN-GKKILGDLS---WQVNPGEH---WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIF 102 (257)
T ss_pred EE--ecceEEEEC-CEeeccccc---eeecCCCc---EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchH
Confidence 55 999999985 568999999 99999999 99999999999999999999999999999999999999888 9
Q ss_pred hhcccEEEEcCC---CccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 975 SLRQAIGVVPQD---TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 975 sLR~~Ig~VPQD---p~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
++|++||+|+-+ .+.=+.+++|=+. ++.+.-+-.+...++ +.+.++....|+..
T Consensus 103 elrk~IG~vS~~L~~~~~~~~~v~dvVl-----------------Sg~~~siG~y~~~~~------~~~~~~a~~lle~~ 159 (257)
T COG1119 103 ELRKRIGLVSSELHERFRVRETVRDVVL-----------------SGFFASIGIYQEDLT------AEDLAAAQWLLELL 159 (257)
T ss_pred HHHHHhCccCHHHHhhcccccccceeee-----------------ecccccccccccCCC------HHHHHHHHHHHHHc
Confidence 999999999742 2222334443332 011111111111111 01122233445555
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CceEEE
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA---SRTTII 1128 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~---grTvIv 1128 (1192)
++.+.. +..=..||-|||||+-||||+.++|++||||||+++||....+...+.|.+... +.|+|+
T Consensus 160 g~~~la-----------~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~ 228 (257)
T COG1119 160 GAKHLA-----------DRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLF 228 (257)
T ss_pred chhhhc-----------cCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEE
Confidence 555432 222346999999999999999999999999999999999999999999987754 378999
Q ss_pred EecChhHHH-hcCEEEEEeCCEEEEEcC
Q psy13234 1129 VAHRLSTII-HADEILVMHAGEIVERGR 1155 (1192)
Q Consensus 1129 IAHRLSTI~-~aDrIlVLe~G~IvE~Gt 1155 (1192)
|||+.+.+. .+++++.+++|+++..|.
T Consensus 229 VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 229 VTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred EEcchhhcccccceEEEeeCCceeeccc
Confidence 999998775 679999999999998773
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=8.8e-27 Score=279.22 Aligned_cols=222 Identities=27% Similarity=0.398 Sum_probs=166.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++++++| ++++.+++++ +.+.+|++ +||||++|+|||||+|+|.|..+|++|+|..++- -+
T Consensus 6 ~~~ls~~~-g~~~l~~~~~---l~~~~G~r---iGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~ 67 (530)
T COG0488 6 LENLSLAY-GDRPLLENVS---LTLNPGER---IGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LR 67 (530)
T ss_pred EeeeEEee-CCceeecCCc---ceeCCCCE---EEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ce
Confidence 78899999 5678999999 99999999 9999999999999999999999999999998772 25
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCCC--HHHHHHHh---------hhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINAS--EEEVKEAA---------TSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~as--dEeV~eAa---------~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
++|++|++.+.++ |+++.+..+..... ..+..++. +...++.. ..--|+|+ -+.++..+
T Consensus 68 v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~--------~e~~~~~~ 138 (530)
T COG0488 68 VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEAL-LEELDGWT--------LEARAEEA 138 (530)
T ss_pred EEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHH-HHhhcccc--------hHHHHHHH
Confidence 9999999999975 99999976543211 01111111 00000000 00111111 12233333
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEE
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 1127 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvI 1127 (1192)
|..-++ |+- +++++ .||||||-|++|||||+.+|+||+|||||.+||.++-+-+.+-|.+. ++ |+|
T Consensus 139 L~gLg~-------~~~-~~~~~----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tvi 204 (530)
T COG0488 139 LLGLGF-------PDE-DRPVS----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVI 204 (530)
T ss_pred HhcCCC-------Ccc-cCchh----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEE
Confidence 332222 222 66766 59999999999999999999999999999999999999999999864 56 999
Q ss_pred EEecChhHHHh-cCEEEEEeCCEEEE-EcCHHHHHhc
Q psy13234 1128 IVAHRLSTIIH-ADEILVMHAGEIVE-RGRHEELLER 1162 (1192)
Q Consensus 1128 vIAHRLSTI~~-aDrIlVLe~G~IvE-~GtheELL~~ 1162 (1192)
+|||+-..+.+ |++|+-++.|++.. .|+++.-++.
T Consensus 205 iVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 205 VVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred EEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHH
Confidence 99999999964 89999999998865 4787766543
No 360
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-26 Score=244.90 Aligned_cols=221 Identities=26% Similarity=0.366 Sum_probs=179.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCeecCCCChH-hh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVSQA-SL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl--ydp~sGsI~IDG~DI~~i~~~-sL 976 (1192)
++|++.+-..++++|+++| +++++|+. .||.||+|||||||.+.|+|. |++++|+|.+||+||.+++++ .-
T Consensus 6 I~dLhv~v~~~keILkgvn---L~v~~GEv---haiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERA 79 (251)
T COG0396 6 IKDLHVEVEGKKEILKGVN---LTVKEGEV---HAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERA 79 (251)
T ss_pred EeeeEEEecCchhhhcCcc---eeEcCCcE---EEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHH
Confidence 5666666554468999999 99999999 999999999999999999998 799999999999999999975 45
Q ss_pred cccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 977 RQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
|.-|..-.|.|.=++| |+++=++.+......+ ++. ...-.+++.++++..++.+
T Consensus 80 r~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~-------------------~~~------~~~~~~~~~e~~~~l~~~~ 134 (251)
T COG0396 80 RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGA-------------------RGI------LPEFIKELKEKAELLGLDE 134 (251)
T ss_pred hcCCEEeecCCccCCCeeHHHHHHHHHHhhhcc-------------------ccc------cHHHHHHHHHHHHHcCCCH
Confidence 7779999999998887 6666665331100000 000 0112456777778888776
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 1134 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLS 1134 (1192)
.. ++-.|+| .+|||||.|.-|+-+++-+|++.|||||-|+||-+.-+.|-+.++++.. ++++++|||+-.
T Consensus 135 ~~------l~R~vN~---GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 135 EF------LERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred HH------hhcccCC---CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 33 2444555 4999999999999999999999999999999999999999999988764 599999999999
Q ss_pred HHHhc--CEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1135 TIIHA--DEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1135 TI~~a--DrIlVLe~G~IvE~GtheELL~ 1161 (1192)
.+... |++.||-+|+|+..|.+ ||..
T Consensus 206 ll~~i~pD~vhvl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 206 LLDYIKPDKVHVLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred HHhhcCCCEEEEEECCEEEecCCH-HHHH
Confidence 88776 99999999999999999 7765
No 361
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=9.4e-27 Score=252.65 Aligned_cols=86 Identities=31% Similarity=0.505 Sum_probs=79.6
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEEEE
Q psy13234 1069 GERGLKLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVM 1145 (1192)
Q Consensus 1069 GErG~~LSGGQKQRIALARALLrdP--~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIlVL 1145 (1192)
......||||||||++||||++++| +++||||||++||+.+.+.+.+.|++.. ++.|+|+|||+++.+..||+|++|
T Consensus 132 ~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l 211 (226)
T cd03270 132 SRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDI 211 (226)
T ss_pred cCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEe
Confidence 4556689999999999999999998 5999999999999999999999998764 478999999999999999999999
Q ss_pred ------eCCEEEEEc
Q psy13234 1146 ------HAGEIVERG 1154 (1192)
Q Consensus 1146 ------e~G~IvE~G 1154 (1192)
++|+|+|+|
T Consensus 212 ~~~~~~~~G~iv~~g 226 (226)
T cd03270 212 GPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCccccCCEEEecC
Confidence 999999987
No 362
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=7.9e-27 Score=258.40 Aligned_cols=94 Identities=31% Similarity=0.533 Sum_probs=85.1
Q ss_pred CCcc-cccCCCCCCChHHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHH
Q psy13234 1063 GYDT-QVGERGLKLSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1063 GyDT-~VGErG~~LSGGQKQRIALARALLrd---P~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~ 1137 (1192)
|++. ..++....||||||||++||||+.++ |+++||||||++||+++.+.+.+.|+++.+ +.|+|+|+|+++.+.
T Consensus 157 gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~ 236 (261)
T cd03271 157 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK 236 (261)
T ss_pred CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4443 35777889999999999999999996 799999999999999999999999988754 799999999999999
Q ss_pred hcCEEEEE------eCCEEEEEcCH
Q psy13234 1138 HADEILVM------HAGEIVERGRH 1156 (1192)
Q Consensus 1138 ~aDrIlVL------e~G~IvE~Gth 1156 (1192)
.||+|++| ++|+|++.|++
T Consensus 237 ~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 237 CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 99999999 89999999974
No 363
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=2.1e-26 Score=245.26 Aligned_cols=159 Identities=24% Similarity=0.300 Sum_probs=127.4
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCC---------ceEEECCeecCCCChHhhcccEEEEcCCCccccc
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVES---------GDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 992 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~s---------GsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnG 992 (1192)
+.+.+| . ++|+||||||||||+++|.++..|.. |++..+|+++.. ...++++++|+|+|..+
T Consensus 18 l~~~~g-~---~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 18 IPFPPG-L---TAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred eecCCC-c---EEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc--
Confidence 666666 6 99999999999999999999986653 468888887754 23468899999999888
Q ss_pred cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCC
Q psy13234 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERG 1072 (1192)
Q Consensus 993 TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG 1072 (1192)
|+.. .++++.+++ +. ++-.+++ .
T Consensus 89 -------~~~~--~~~~~~~~l----------------------------------~~----------~~~~~~~----~ 111 (197)
T cd03278 89 -------YSII--SQGDVSEII----------------------------------EA----------PGKKVQR----L 111 (197)
T ss_pred -------eeEE--ehhhHHHHH----------------------------------hC----------CCccccc----h
Confidence 3211 123333333 32 2223333 3
Q ss_pred CCCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEe
Q psy13234 1073 LKLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH 1146 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALL----rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe 1146 (1192)
..||||||||++||||+. ++|++++|||||++||+++...+.+.|++..++.|+|+|||+++.+..||+++.+.
T Consensus 112 ~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 112 SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 469999999999999985 67799999999999999999999999999888899999999999999999999986
No 364
>KOG0064|consensus
Probab=99.94 E-value=2.5e-23 Score=239.92 Aligned_cols=198 Identities=25% Similarity=0.332 Sum_probs=162.2
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|+..--|.+..+...++ |.+.+|-. +.|.||+|||||+|.|.|-|+|+...|...+-- +.+
T Consensus 484 lenIpvItP~~~vvv~~Lt---f~i~~G~h---LLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~ 546 (728)
T KOG0064|consen 484 LENIPVITPAGDVLVPKLT---FQIEPGMH---LLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNN 546 (728)
T ss_pred EecCceeccCcceeeccee---EEecCCce---EEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------Ccc
Confidence 6777666565555555666 99999888 999999999999999999999999999887533 335
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
|=|+||.|+.=-||.||-|-| ||. -||+.+- .++|.++.+.|+.++++. |.+
T Consensus 547 mFYIPQRPYms~gtlRDQIIY--PdS-~e~~~~k------------------------g~~d~dL~~iL~~v~L~~-i~q 598 (728)
T KOG0064|consen 547 IFYIPQRPYMSGGTLRDQIIY--PDS-SEQMKRK------------------------GYTDQDLEAILDIVHLEH-ILQ 598 (728)
T ss_pred eEeccCCCccCcCcccceeec--CCc-HHHHHhc------------------------CCCHHHHHHHHHHhhHHH-HHH
Confidence 999999999999999999988 443 3333221 478999999999999985 555
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhc
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHA 1139 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~a 1139 (1192)
-..|+|..-.= -.-||||||||+++||.++.+|+--+|||+|||+-.+.|..|.++.+.. |-+.|-||||+|..+--
T Consensus 599 r~~g~da~~dW-kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h 675 (728)
T KOG0064|consen 599 REGGWDAVRDW-KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYH 675 (728)
T ss_pred hccChhhhccH-HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHH
Confidence 56778876432 3469999999999999999999999999999999999999999999875 79999999999988755
Q ss_pred CEEEEE
Q psy13234 1140 DEILVM 1145 (1192)
Q Consensus 1140 DrIlVL 1145 (1192)
..++-.
T Consensus 676 ~~ll~~ 681 (728)
T KOG0064|consen 676 THLLEF 681 (728)
T ss_pred HHHHhc
Confidence 544444
No 365
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=3.5e-26 Score=249.11 Aligned_cols=181 Identities=21% Similarity=0.307 Sum_probs=127.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHh----------------cCCCCCCc--------eEEECCeecCCC---ChHhhcccEEE
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLF----------------RFYDVESG--------DIFIDNQNIKTV---SQASLRQAIGV 982 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLl----------------Rlydp~sG--------sI~IDG~DI~~i---~~~sLR~~Ig~ 982 (1192)
|+.++|+||+|||||||+++|. ++..+.+| +|.+++.|-... +...+++++++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~ 102 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGL 102 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEEC
Confidence 3459999999999999999998 44555566 666666432211 23456788999
Q ss_pred EcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCC
Q psy13234 983 VPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062 (1192)
Q Consensus 983 VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~ 1062 (1192)
+||++.+++. .++.+|+.+++...++++....+ ...++++. .+..+
T Consensus 103 ~~~~~~l~~~-----------~~t~~ei~~~l~~~gl~~~~~~~-----------~~~qg~i~----------~l~~l-- 148 (243)
T cd03272 103 KKDEYFLDKK-----------NVTKNDVMNLLESAGFSRSNPYY-----------IVPQGKIN----------SLTNM-- 148 (243)
T ss_pred CCCEEEECCe-----------EcCHHHHHHHHHHcCCCCCCCcE-----------EEEcCchH----------Hhhhc--
Confidence 9988777542 23455666665333332110000 00000111 11111
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh
Q psy13234 1063 GYDTQVGERGLKLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1063 GyDT~VGErG~~LSGGQKQRIALARALL----rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~ 1138 (1192)
+....+.+..||||||||++||||++ ++|++++|||||++||+++.+.+.+.|+++.+++|+|+++|+.+....
T Consensus 149 --~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~ 226 (243)
T cd03272 149 --KQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEV 226 (243)
T ss_pred --cccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh
Confidence 22345677899999999999999996 468999999999999999999999999998778899999999999999
Q ss_pred cCEEEEEe
Q psy13234 1139 ADEILVMH 1146 (1192)
Q Consensus 1139 aDrIlVLe 1146 (1192)
||+|++|+
T Consensus 227 ~d~i~~l~ 234 (243)
T cd03272 227 ADKFYGVK 234 (243)
T ss_pred CCEEEEEE
Confidence 99999986
No 366
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.8e-25 Score=240.84 Aligned_cols=196 Identities=24% Similarity=0.356 Sum_probs=162.0
Q ss_pred CCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCc
Q psy13234 909 KGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV 988 (1192)
Q Consensus 909 ~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~ 988 (1192)
....+|+||| |++.+|++ +||||++|||||||+|+|.|.|+|++|+|.++|.--.-+.. ..|+-||
T Consensus 38 ~~~~aL~dis---f~i~~Ge~---vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~pe--- 103 (249)
T COG1134 38 AEFWALKDIS---FEIYKGER---VGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDPE--- 103 (249)
T ss_pred ceEEEecCce---EEEeCCCE---EEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCcc---
Confidence 3457899999 99999999 99999999999999999999999999999999963222221 2333333
Q ss_pred cccccHHHHHhccc--cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcc
Q psy13234 989 LFNNSIKFNIQYAR--INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDT 1066 (1192)
Q Consensus 989 LFnGTIreNI~~G~--~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT 1066 (1192)
-|-||||.+-. ...+.+|+. +.+.+..+-|++.|++ |.
T Consensus 104 ---lTGreNi~l~~~~~G~~~~ei~------------------------------~~~~eIieFaELG~fi-------~~ 143 (249)
T COG1134 104 ---LTGRENIYLRGLILGLTRKEID------------------------------EKVDEIIEFAELGDFI-------DQ 143 (249)
T ss_pred ---cchHHHHHHHHHHhCccHHHHH------------------------------HHHHHHHHHHHHHHHh-------hC
Confidence 47899997421 234555553 3445566888999987 45
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCceEEEEecChhHHHh-cCEEEE
Q psy13234 1067 QVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRLSTIIH-ADEILV 1144 (1192)
Q Consensus 1067 ~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l-~~grTvIvIAHRLSTI~~-aDrIlV 1144 (1192)
||- +.|-|.+-|+|+|=|.--+|+|||+||+.|.-|+.=.++=++.+++. .+++|+|+|||.++.|++ ||++++
T Consensus 144 Pvk----tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~ 219 (249)
T COG1134 144 PVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIW 219 (249)
T ss_pred chh----hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEE
Confidence 554 79999999999999999999999999999999999888888888888 677999999999999975 999999
Q ss_pred EeCCEEEEEcCHHHHHhc
Q psy13234 1145 MHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1145 Le~G~IvE~GtheELL~~ 1162 (1192)
|++|+|...|+++|..+.
T Consensus 220 l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 220 LEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred EeCCEEEEcCCHHHHHHH
Confidence 999999999999999864
No 367
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=9.3e-26 Score=241.40 Aligned_cols=212 Identities=21% Similarity=0.389 Sum_probs=175.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++|+.+|.. +.+.+|+| |.+++|+. .+++|++|+||||.+|+|+|+.+|++|+|.+||.+++. ..+.+
T Consensus 5 ie~vtK~Fg~-k~av~~is---f~v~~G~i---~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~r 73 (300)
T COG4152 5 IEGVTKSFGD-KKAVDNIS---FEVPPGEI---FGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNR 73 (300)
T ss_pred EecchhccCc-eeeeccee---eeecCCeE---EEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhh
Confidence 7788888854 56789999 99999999 99999999999999999999999999999999999876 46778
Q ss_pred EEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
|||+|.+--|+. -|+.|-|.|-.. ..+.+|+.+-+ ..-|++.++.
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~------------------------------~~wLer~~i~-- 121 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL------------------------------QAWLERLEIV-- 121 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHH------------------------------HHHHHhcccc--
Confidence 999999999998 599999986421 23344443322 1122333321
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLST 1135 (1192)
|+.| .+-..||-|-.|.|-+--|++.+|+++|||||.|+||+-+.+.+.+++.+.. +|.|+|+-+||++-
T Consensus 122 ------~~~~---~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~ 192 (300)
T COG4152 122 ------GKKT---KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH 192 (300)
T ss_pred ------cccc---chHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHH
Confidence 2222 2334699999999999999999999999999999999999999999998775 46999999999998
Q ss_pred HH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1136 II-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1136 I~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+. -||+++.|++|+.|-.|+-++..+..
T Consensus 193 vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 193 VEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred HHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 85 59999999999999999999887643
No 368
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=2.9e-26 Score=246.37 Aligned_cols=174 Identities=17% Similarity=0.155 Sum_probs=131.8
Q ss_pred CCcccceEEEEcCCCCcHHHHHHHHh-cCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccC
Q psy13234 926 ESQLVWYLLQVGQSGAGKSTIIRLLF-RFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARIN 1004 (1192)
Q Consensus 926 ~Ge~Ge~VAIVG~SGSGKSTLlrLLl-Rlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~ 1004 (1192)
+++.|+.++|+||+|||||||+++|. .+|.+..+....+ .....+.....+..|++++|++. +...++++. +
T Consensus 24 ~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~f~~~~----~~~~~~r~~--g 96 (213)
T cd03279 24 GLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEVSFTFQLGG----KKYRVERSR--G 96 (213)
T ss_pred CCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEEEEEEEECC----eEEEEEEec--C
Confidence 33446669999999999999999999 5777777777665 33345556677888999999983 222333332 3
Q ss_pred CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCC-CcccccCCCCCCChHHHHHH
Q psy13234 1005 ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDG-YDTQVGERGLKLSGGEKQRV 1083 (1192)
Q Consensus 1005 asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~G-yDT~VGErG~~LSGGQKQRI 1083 (1192)
.+.+++.++. .++.| +++.+...+.+||||||||+
T Consensus 97 l~~~~~~~~~--------------------------------------------~l~~g~l~~~l~~~~~~lS~G~~~r~ 132 (213)
T cd03279 97 LDYDQFTRIV--------------------------------------------LLPQGEFDRFLARPVSTLSGGETFLA 132 (213)
T ss_pred CCHHHHHHhh--------------------------------------------hhhhcchHHHhcCCccccCHHHHHHH
Confidence 3443333321 01222 45555667789999999999
Q ss_pred HHHHHhcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHh-cCEEEEEeCCEE
Q psy13234 1084 AIARTLLK----------APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGEI 1150 (1192)
Q Consensus 1084 ALARALLr----------dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~-aDrIlVLe~G~I 1150 (1192)
+||||+.. +|++++|||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|+++++|.+
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 99999974 6789999999999999999999999998865 7899999999997754 799999999853
No 369
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=233.34 Aligned_cols=225 Identities=19% Similarity=0.358 Sum_probs=183.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC-eecCCCChHhh-c
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN-QNIKTVSQASL-R 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG-~DI~~i~~~sL-R 977 (1192)
.++++.+|.. -..++++| |.+.+|+. -+|+||+|+||||++..|.|--+|+.|++++|| .|++.++...+ |
T Consensus 8 ~~~vsVsF~G-F~Aln~ls---~~v~~Gel---r~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 8 LDGVSVSFGG-FKALNDLS---FSVDPGEL---RVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred EeceEEEEcc-eeeeeeeE---EEecCCeE---EEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 6778888754 34677888 99999998 999999999999999999999999999999999 99999997665 5
Q ss_pred ccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 978 QAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
.-||==.|.|..|.. |++||+.++.. -+.-+.... ++.- .....+++.++|...++.+.
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~--~~k~v~a~L-----------~~r~-------~~~e~~ride~La~igL~~~ 140 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALN--RDKSVFASL-----------FARL-------RAEERRRIDELLATIGLGDE 140 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhc--CCcchHHHh-----------hhhc-------ChhHHHHHHHHHHHcccchh
Confidence 569999999999985 99999976521 112233222 0000 01224467777777777654
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI 1136 (1192)
-. .-...||-||||++-|+--+..+|++|+||||++++-.+...+.-+.|+++..++++++|-|++..+
T Consensus 141 ~~-----------~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fv 209 (249)
T COG4674 141 RD-----------RLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFV 209 (249)
T ss_pred hh-----------hhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHH
Confidence 32 2345899999999999999999999999999999997777777888899999999999999999999
Q ss_pred Hh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1137 IH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1137 ~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+. ||+|-||++|+|...|+-+|+-+.
T Consensus 210 r~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 210 REIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred HHhhheeEEEeccceeecccHHHhhcC
Confidence 75 999999999999999999998654
No 370
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=224.76 Aligned_cols=193 Identities=25% Similarity=0.416 Sum_probs=154.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCeecCCCChHhh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQNIKTVSQASL 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~---sGsI~IDG~DI~~i~~~sL 976 (1192)
++||+...+ +.-.+.++| +++.+|+. +-+.||||||||||+.-+.|..+++ +|++.+|++++..++-.
T Consensus 5 l~nvsl~l~-g~cLLa~~n---~Tia~Gei---vtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~-- 75 (213)
T COG4136 5 LKNVSLRLP-GSCLLANVN---FTIAKGEI---VTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA-- 75 (213)
T ss_pred eeeeeecCC-CceEEEeee---EEecCCcE---EEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--
Confidence 556665543 344677788 99999888 9999999999999999999999985 69999999999998854
Q ss_pred cccEEEEcCCCcccc-ccHHHHHhccccC-CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 977 RQAIGVVPQDTVLFN-NSIKFNIQYARIN-ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFn-GTIreNI~~G~~~-asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
+++||++.||+.||+ -++-+||.|+-|. ... ++......+||++.++.
T Consensus 76 qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG------------------------------~aRr~~a~aAL~~~gL~ 125 (213)
T COG4136 76 QRQIGILFQDALLFPHLSVGQNLLFALPATLKG------------------------------NARRNAANAALERSGLD 125 (213)
T ss_pred hhheeeeecccccccccccccceEEecCccccc------------------------------HHHHhhHHHHHHHhccc
Confidence 689999999999998 5999999987552 121 12233445678889998
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHH-HH-cCCceEEEEecC
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN-RV-CASRTTIIVAHR 1132 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~-~l-~~grTvIvIAHR 1132 (1192)
++..+.|+ .||||||-|||+-|+++..|+.++||||.|.||..-..+..+-.. +. ..+--+|.|||+
T Consensus 126 g~f~~dP~-----------tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 126 GAFHQDPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred hhhhcChh-----------hcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 88877763 699999999999999999999999999999999887777655442 22 246889999999
Q ss_pred hhHHHhcCEE
Q psy13234 1133 LSTIIHADEI 1142 (1192)
Q Consensus 1133 LSTI~~aDrI 1142 (1192)
+..+..-.||
T Consensus 195 ~~DvpagsrV 204 (213)
T COG4136 195 LQDVPAGSRV 204 (213)
T ss_pred cccCCCCCee
Confidence 9877633333
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=3.8e-25 Score=265.25 Aligned_cols=200 Identities=27% Similarity=0.375 Sum_probs=165.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.++.+++++| +.+.+|++ +|||||+|+|||||+|+|.|-..|.+|+|.+.-. -+
T Consensus 324 ~~~~~~~y~~~~~l~~~~s---~~i~~g~r---iaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 324 FENVSKGYDGGRLLLKDLS---FRIDRGDR---IAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred EeccccccCCCceeecCce---EEecCCCE---EEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 9999999987788999999 99999999 9999999999999999999999999999987542 25
Q ss_pred EEEEcCCC-cccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDT-VLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp-~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
|||.+|+. .+++ .|+.|++.-..|+..+.++...+ ...+...
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L----------------------------------~~f~F~~-- 430 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL----------------------------------GRFGFTG-- 430 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH----------------------------------HHcCCCh--
Confidence 99999988 4443 48999987554444444444443 4444432
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~ 1137 (1192)
+-..++|+ .||||||-|++||+.++.+|.+|||||||.+||.+|-..+.++|.+. .-|+|+|||+...+.
T Consensus 431 ----~~~~~~v~----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 431 ----EDQEKPVG----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLD 500 (530)
T ss_pred ----HHHhCchh----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHH
Confidence 12244444 69999999999999999999999999999999999999999999986 469999999999996
Q ss_pred h-cCEEEEEeCCEEEEE-cCHHHHHhcC
Q psy13234 1138 H-ADEILVMHAGEIVER-GRHEELLERN 1163 (1192)
Q Consensus 1138 ~-aDrIlVLe~G~IvE~-GtheELL~~~ 1163 (1192)
. |++|+.+++ ++.++ |++++-.+..
T Consensus 501 ~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 501 RVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred hhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 5 899999999 88887 8888876543
No 372
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=5.1e-25 Score=242.16 Aligned_cols=187 Identities=20% Similarity=0.276 Sum_probs=133.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCe-ecCCCC-h-HhhcccEEEEcCCCcc---------c-cccHHHHH
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVE-SGDIFIDNQ-NIKTVS-Q-ASLRQAIGVVPQDTVL---------F-NNSIKFNI 998 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~-sGsI~IDG~-DI~~i~-~-~sLR~~Ig~VPQDp~L---------F-nGTIreNI 998 (1192)
++||||||||||||+++|.++..++ .|+++..|. |+-... . ..-+.+++++.|++.- . .-||++||
T Consensus 28 ~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I 107 (251)
T cd03273 28 NAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQI 107 (251)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEEE
Confidence 9999999999999999999999886 569999887 542211 1 1234589999999632 1 34777776
Q ss_pred hccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH-------------HHHhcCCCCCc
Q psy13234 999 QYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH-------------ERILSFPDGYD 1065 (1192)
Q Consensus 999 ~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh-------------d~I~~LP~GyD 1065 (1192)
..+.... +. ........+++.++|+.+++. +.+.+.+
T Consensus 108 ~~~~~~~------------------------~~--in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~---- 157 (251)
T cd03273 108 VLGGTNK------------------------YL--INGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMG---- 157 (251)
T ss_pred EcCCceE------------------------EE--ECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhH----
Confidence 5432100 00 000012234555555655553 0011111
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCE
Q psy13234 1066 TQVGERGLKLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADE 1141 (1192)
Q Consensus 1066 T~VGErG~~LSGGQKQRIALARALL----rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDr 1141 (1192)
....+....||||||||++||||+. ++|++++|||||++||+++.+.+.+.|++..++.|+|+||||.+.+..||+
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~ 237 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANV 237 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCE
Confidence 1223445689999999999999997 688999999999999999999999999998888999999999999999999
Q ss_pred EEEEe--CCE
Q psy13234 1142 ILVMH--AGE 1149 (1192)
Q Consensus 1142 IlVLe--~G~ 1149 (1192)
|+-+. ||.
T Consensus 238 v~~~~~~~~~ 247 (251)
T cd03273 238 LFRTRFVDGT 247 (251)
T ss_pred EEEEEeeCCE
Confidence 98764 553
No 373
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.1e-23 Score=215.33 Aligned_cols=230 Identities=24% Similarity=0.401 Sum_probs=168.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC-----eecCCCChH
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN-----QNIKTVSQA 974 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG-----~DI~~i~~~ 974 (1192)
.++++..|.+.+ --+++| |.+-|||. +||||+||||||||+++|.+-..|++|+|.++- .|+-..+..
T Consensus 9 V~~lsk~Yg~~~-gc~~vs---F~l~PGeV---LgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 9 VSGLSKLYGPGK-GCRDVS---FDLYPGEV---LGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred ehhhhhhhCCCc-Cccccc---eeecCCcE---EEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence 667777786644 346788 99999999 999999999999999999999999999999866 334344332
Q ss_pred ----hhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCC-CCchhhhhhcccHHHHHHHHH
Q psy13234 975 ----SLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPD-GYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 975 ----sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd-~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
-+|.--|+|.|+|- |-+++.- +| -+|+-++.+...+ .|. + -
T Consensus 82 eRR~L~RTeWG~VhQnP~-------DGLRm~V-SA----------G~NiGERlma~G~RHYG-----------~-----i 127 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPR-------DGLRMQV-SA----------GGNIGERLMAIGARHYG-----------N-----I 127 (258)
T ss_pred HHHHHhhhccceeecCcc-------ccceeee-cc----------CCccchhHHhhhhhhhh-----------h-----H
Confidence 24666899999994 3444321 00 0111111111110 010 0 1
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC--ceEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTI 1127 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g--rTvI 1127 (1192)
++...|++++..-. .+.+.+....+|||.+||+-|||-|...|+++.+||||-+||....+.+.+.++.+-.+ -.+|
T Consensus 128 R~~a~~WL~~VEI~-~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~v 206 (258)
T COG4107 128 RAEAQDWLEEVEID-LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHHHHhcccC-cccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEE
Confidence 12223444433222 34566778899999999999999999999999999999999999999999998877554 6899
Q ss_pred EEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHHHH
Q psy13234 1128 IVAHRLSTII-HADEILVMHAGEIVERGRHEELLER-NGVYASMWI 1171 (1192)
Q Consensus 1128 vIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L~~ 1171 (1192)
+|||++...+ -+||.+||++|+++|.|-.+..+.. ...|.++.-
T Consensus 207 iVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 207 IVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred EEechhHHHHHhhhcceeecCCCEeccccccccccCCCCchHHHHH
Confidence 9999999886 5999999999999999988888754 466777654
No 374
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.8e-24 Score=220.31 Aligned_cols=178 Identities=21% Similarity=0.316 Sum_probs=146.7
Q ss_pred CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccc
Q psy13234 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990 (1192)
Q Consensus 911 ~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LF 990 (1192)
...+.+++ |++.+|+. +-|+||+|||||||+|+|.|+.+|++|+|+++|.+++... ++.++.+-|+.-.+-+=
T Consensus 15 ~~lf~~L~---f~l~~Ge~---~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~yLGH~~giK 87 (209)
T COG4133 15 RTLFSDLS---FTLNAGEA---LQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLYLGHQPGIK 87 (209)
T ss_pred ceeeccee---EEEcCCCE---EEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHHhhcccccc
Confidence 45666777 99999999 9999999999999999999999999999999999998764 44577788887666554
Q ss_pred c-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCccccc
Q psy13234 991 N-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVG 1069 (1192)
Q Consensus 991 n-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VG 1069 (1192)
. -|+.||++|-..- .+ ..+++.+++|+..+++.++ .|.|++
T Consensus 88 ~eLTa~ENL~F~~~~----------------------~~---------~~~~~~i~~Al~~vgL~g~-------~dlp~~ 129 (209)
T COG4133 88 TELTALENLHFWQRF----------------------HG---------SGNAATIWEALAQVGLAGL-------EDLPVG 129 (209)
T ss_pred chhhHHHHHHHHHHH----------------------hC---------CCchhhHHHHHHHcCcccc-------cccchh
Confidence 4 5999999975420 00 1245677778899998765 366666
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCceEEEEecChhHHH
Q psy13234 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1070 ErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l-~~grTvIvIAHRLSTI~ 1137 (1192)
+||-||+.|+||||-++..+|+.|||||++|||.+.++.+-..+... .+|-.||.-||...-+.
T Consensus 130 ----~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 130 ----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred ----hcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 69999999999999999999999999999999999999998888654 45688999999987654
No 375
>KOG0059|consensus
Probab=99.90 E-value=1.6e-23 Score=266.30 Aligned_cols=220 Identities=21% Similarity=0.375 Sum_probs=184.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC-ChHhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV-SQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i-~~~sLR~ 978 (1192)
.+++...|+....+.++++ +.+++|+. .|+-|++||||||++++|.|...|++|++.++|.|+..- +.++.|+
T Consensus 567 ~~~L~k~y~~~~~Av~~ls---~~V~~gec---fgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 567 LNNLSKVYGGKDGAVRGLS---FAVPPGEC---FGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred EcceeeeecchhhhhcceE---EEecCCce---EEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 6778888876544777888 99999998 999999999999999999999999999999999999875 4456999
Q ss_pred cEEEEcCCCccccc-cHHHHHhc-ccc-CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQY-ARI-NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~-G~~-~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
+|||+||+..|++. |.||.+.+ ++- +....++. +.+.+.|+..++.+
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~------------------------------~~v~~ll~~~~L~~ 690 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIG------------------------------SAIEKLLRLVGLGP 690 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHH------------------------------HHHHHHHHHcCChh
Confidence 99999999998885 99999973 321 12222222 22456677777765
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC-ceEEEEecChh
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS 1134 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g-rTvIvIAHRLS 1134 (1192)
.. |++++ ++|||+|.|+++|-|++.+|++++|||||+++|+++.+.+-+.+++..++ +.+|..||.++
T Consensus 691 ~~-------~~~~~----~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe 759 (885)
T KOG0059|consen 691 YA-------NKQVR----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME 759 (885)
T ss_pred hh-------ccchh----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 53 44543 79999999999999999999999999999999999999999999998876 49999999999
Q ss_pred HHH-hcCEEEEEeCCEEEEEcCHHHHHhcCcHH
Q psy13234 1135 TII-HADEILVMHAGEIVERGRHEELLERNGVY 1166 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~IvE~GtheELL~~~G~Y 1166 (1192)
..+ -|||+..|.+|++...|+.++|..+-|.+
T Consensus 760 E~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~g 792 (885)
T KOG0059|consen 760 EAEALCTRTAIMVIGQLRCIGSPQELKSRYGSG 792 (885)
T ss_pred HHHHHhhhhheeecCeeEEecChHHHHhhcCCc
Confidence 886 59999999999999999999998764443
No 376
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1e-23 Score=228.96 Aligned_cols=213 Identities=25% Similarity=0.365 Sum_probs=158.5
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEE-cCCCccc
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV-PQDTVLF 990 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~V-PQDp~LF 990 (1192)
+..++|| |.+++|+. ++++|++|+||||++|+|.|+.-|++|.|+++|.+-.+=..+-+ +++++| .|...|-
T Consensus 38 ~AVqdis---f~IP~G~i---vgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~-~~~~~v~gqk~ql~ 110 (325)
T COG4586 38 EAVQDIS---FEIPKGEI---VGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL-RSIGLVMGQKLQLW 110 (325)
T ss_pred hhhheee---eecCCCcE---EEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH-HHHHHHhhhhheee
Confidence 3667888 99999999 99999999999999999999999999999999998766333333 444443 2322211
Q ss_pred -cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCccccc
Q psy13234 991 -NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVG 1069 (1192)
Q Consensus 991 -nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VG 1069 (1192)
+--+.|-+ +|-++.+ +.+|++..+ +...+-+ |. +++..+-
T Consensus 111 Wdlp~~ds~----------~v~~~Iy----------------------~Ipd~~F~~--r~~~l~e-iL----dl~~~lk 151 (325)
T COG4586 111 WDLPALDSL----------EVLKLIY----------------------EIPDDEFAE--RLDFLTE-IL----DLEGFLK 151 (325)
T ss_pred eechhhhhH----------HHHHHHH----------------------hCCHHHHHH--HHHHHHH-Hh----cchhhhh
Confidence 11122222 2222220 122333322 1122221 22 2344444
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHH-hcCEEEEEe
Q psy13234 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTII-HADEILVMH 1146 (1192)
Q Consensus 1070 ErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~-~aDrIlVLe 1146 (1192)
..-.+||=|||-|.-||-||+++|+||.|||||=+||-.+...|.+.+++..+ ++|++..||.++-|. -||||++++
T Consensus 152 ~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~ 231 (325)
T COG4586 152 WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLID 231 (325)
T ss_pred hhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEee
Confidence 45568999999999999999999999999999999999999999999987654 689999999999885 599999999
Q ss_pred CCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1147 AGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1147 ~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
+|+++..|+-++|.++-|.|++++
T Consensus 232 ~Gqlv~dg~l~~l~~~f~~~k~~~ 255 (325)
T COG4586 232 QGQLVFDGTLAQLQEQFGPYKEFS 255 (325)
T ss_pred CCcEeecccHHHHHHHhCCceEEE
Confidence 999999999999999888877665
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.90 E-value=1e-23 Score=225.79 Aligned_cols=155 Identities=25% Similarity=0.284 Sum_probs=124.3
Q ss_pred eEEEEcCCCCcHHHHHHHH----hcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCC-----ccccc-cHHHHHhcc
Q psy13234 932 YLLQVGQSGAGKSTIIRLL----FRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-----VLFNN-SIKFNIQYA 1001 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLL----lRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp-----~LFnG-TIreNI~~G 1001 (1192)
.++|+||||||||||+++| .|...|.+|.+.-|... +.....+..|++++|++ .++.. |+.+|+.++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~---i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~ 100 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKL---IREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC 100 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHH---HhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeee
Confidence 4999999999999999998 59988988877622222 23345678899999998 44332 888888764
Q ss_pred ccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHH
Q psy13234 1002 RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQ 1081 (1192)
Q Consensus 1002 ~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQ 1081 (1192)
. ++++ . +.+ .+....||+||||
T Consensus 101 ~----~~~~----------------------------------~---------~~~-----------~~~~~~LS~G~~~ 122 (204)
T cd03240 101 H----QGES----------------------------------N---------WPL-----------LDMRGRCSGGEKV 122 (204)
T ss_pred c----hHHH----------------------------------H---------HHH-----------hcCccccCccHHH
Confidence 1 1111 1 111 3445689999999
Q ss_pred H------HHHHHHhcCCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHcC--CceEEEEecChhHHHhcCEEEEEeC
Q psy13234 1082 R------VAIARTLLKAPQIVLLDEATSALDTKTER-NIQSALNRVCA--SRTTIIVAHRLSTIIHADEILVMHA 1147 (1192)
Q Consensus 1082 R------IALARALLrdP~ILLLDEATSALD~eTE~-~Iq~aL~~l~~--grTvIvIAHRLSTI~~aDrIlVLe~ 1147 (1192)
| +|||||+..+|++++|||||++||+++.+ .+.+.|++..+ ++|+|+|||+++.+..||+|++|++
T Consensus 123 ~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 123 LASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 6 79999999999999999999999999999 99999988765 6899999999999999999999964
No 378
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6.1e-23 Score=209.57 Aligned_cols=188 Identities=24% Similarity=0.329 Sum_probs=135.7
Q ss_pred CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC----eecCCCCh----HhhcccEEE
Q psy13234 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN----QNIKTVSQ----ASLRQAIGV 982 (1192)
Q Consensus 911 ~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG----~DI~~i~~----~sLR~~Ig~ 982 (1192)
-|+++++| +.++.||. +.+-||||||||||+|.|.+-|.|++|+|.+.- .|+..-.+ +--|+.|||
T Consensus 24 LpV~~~vs---lsV~aGEC---vvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGy 97 (235)
T COG4778 24 LPVLRNVS---LSVNAGEC---VVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGY 97 (235)
T ss_pred eeeeecee---EEecCccE---EEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHH
Confidence 36888888 99999888 999999999999999999999999999999843 24433332 334667999
Q ss_pred EcCCCccccc-----cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 983 VPQDTVLFNN-----SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 983 VPQDp~LFnG-----TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
|+|---..+. -++|-+. . ...+.|+- .++..+.|.+-++-+..
T Consensus 98 VSQFLRviPRV~aLdVvaePll-~-~gv~~~~a------------------------------~~~a~~Ll~rLnlperL 145 (235)
T COG4778 98 VSQFLRVIPRVSALDVVAEPLL-A-RGVPREVA------------------------------RAKAADLLTRLNLPERL 145 (235)
T ss_pred HHHHHHhccCcchHHHHHhHHH-H-cCCCHHHH------------------------------HHHHHHHHHHcCCCHHH
Confidence 9994322221 0111110 0 01111111 12223334444554444
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI 1136 (1192)
=+|| ...+||||+||+.|||.+.-|-+||+|||||++||+.+.+.+.+.|++.+ +|..+|=|=|+-+.=
T Consensus 146 W~La----------PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevr 215 (235)
T COG4778 146 WSLA----------PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVR 215 (235)
T ss_pred hcCC----------CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHH
Confidence 4443 45899999999999999999999999999999999999999999998765 568888899998764
Q ss_pred H-hcCEEEEEe
Q psy13234 1137 I-HADEILVMH 1146 (1192)
Q Consensus 1137 ~-~aDrIlVLe 1146 (1192)
. -|||++-+.
T Consensus 216 e~vadR~~~~~ 226 (235)
T COG4778 216 EAVADRLLDVS 226 (235)
T ss_pred HHHhhheeecc
Confidence 3 489998775
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=2.4e-23 Score=224.28 Aligned_cols=173 Identities=18% Similarity=0.237 Sum_probs=122.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhc-ccEEEEcCCCccccc-cHHHHHhccccCCCHH
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR-QAIGVVPQDTVLFNN-SIKFNIQYARINASEE 1008 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR-~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdE 1008 (1192)
+.++|+||+||||||++++|. .++|.+.. ..| +++++++|+..+++. |.++++.+-......+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKP 90 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHH
Confidence 349999999999999999997 34565442 334 679999999887765 6667665432110000
Q ss_pred HHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q psy13234 1009 EVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIART 1088 (1192)
Q Consensus 1009 eV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARA 1088 (1192)
..+. .++.. +... ..+ ....+ ..+..+|++.++.++ .||+|||||++||||
T Consensus 91 -~l~~---~g~~~------~~~~----------~~v----~~~~~-~~~~~L~~~~~~~~~----~lS~G~~~r~~la~a 141 (212)
T cd03274 91 -LLKS---KGIDL------DHNR----------FLI----LQGEV-EQIAQMPKKSWKNIS----NLSGGEKTLSSLALV 141 (212)
T ss_pred -HHHH---CCcCC------CCCc----------eEE----cCCcE-EEeeccccccccchh----hcCHHHHHHHHHHHH
Confidence 0000 00000 0000 000 00111 134456888888754 699999999999999
Q ss_pred hc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeC
Q psy13234 1089 LL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 1147 (1192)
Q Consensus 1089 LL----rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~ 1147 (1192)
+. ++|++++|||||++||+++.+.+.+.+++..++.|+|+|||+.+....||+|++|..
T Consensus 142 l~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 142 FALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 96 358999999999999999999999999999888999999999999999999999963
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.88 E-value=6.1e-22 Score=259.58 Aligned_cols=102 Identities=31% Similarity=0.470 Sum_probs=91.4
Q ss_pred CCccc-ccCCCCCCChHHHHHHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH
Q psy13234 1063 GYDTQ-VGERGLKLSGGEKQRVAIARTLL---KAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1063 GyDT~-VGErG~~LSGGQKQRIALARALL---rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~ 1137 (1192)
|++.. .++...+||||||||++||||++ ++|+++||||||++||.++.+.+.+.|+++. +++|+|+|+|+++.+.
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~ 876 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVK 876 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 45543 56777889999999999999998 6999999999999999999999999998875 4789999999999999
Q ss_pred hcCEEEEEe------CCEEEEEcCHHHHHhcCc
Q psy13234 1138 HADEILVMH------AGEIVERGRHEELLERNG 1164 (1192)
Q Consensus 1138 ~aDrIlVLe------~G~IvE~GtheELL~~~G 1164 (1192)
.||+|++|+ +|++++.|+++++.....
T Consensus 877 ~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~~s 909 (1809)
T PRK00635 877 VADYVLELGPEGGNLGGYLLASCSPEELIHLHT 909 (1809)
T ss_pred hCCEEEEEccCCCCCCCEEEEeCCHHHHHhccC
Confidence 999999996 899999999999987543
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=1.4e-22 Score=256.26 Aligned_cols=106 Identities=34% Similarity=0.546 Sum_probs=94.9
Q ss_pred CCcc-cccCCCCCCChHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH
Q psy13234 1063 GYDT-QVGERGLKLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1063 GyDT-~VGErG~~LSGGQKQRIALARALLrdP---~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~ 1137 (1192)
|++. ..+.....||||||||++|||||+++| +++||||||++||.++.+.+.+.|+++. +++|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4443 357778899999999999999999999 9999999999999999999999998875 5799999999999999
Q ss_pred hcCEEEEE------eCCEEEEEcCHHHHHhcCcHHHH
Q psy13234 1138 HADEILVM------HAGEIVERGRHEELLERNGVYAS 1168 (1192)
Q Consensus 1138 ~aDrIlVL------e~G~IvE~GtheELL~~~G~Ya~ 1168 (1192)
.||+|++| ++|+|++.|+++|+.+....|..
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~ 934 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTG 934 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHH
Confidence 99999999 79999999999999977655443
No 382
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=6.9e-23 Score=225.10 Aligned_cols=181 Identities=20% Similarity=0.202 Sum_probs=124.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCee--c-----CCCChHhhcccEEEEcCCC--ccccccHHHHHh-c-
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN--I-----KTVSQASLRQAIGVVPQDT--VLFNNSIKFNIQ-Y- 1000 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~D--I-----~~i~~~sLR~~Ig~VPQDp--~LFnGTIreNI~-~- 1000 (1192)
.++|+||+|||||||+.+|.+...++.|+++.++.+ | ...+.....-.+.+..|++ .++..+++++-. |
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 399999999999999999999998888888765532 1 1112223444566666653 244444433321 1
Q ss_pred -cccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc--CCCCCcccccC-------
Q psy13234 1001 -ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS--FPDGYDTQVGE------- 1070 (1192)
Q Consensus 1001 -G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~--LP~GyDT~VGE------- 1070 (1192)
.....+.+++ .+.++..+++.+... .|+|-=+.+.+
T Consensus 104 ingk~~s~~~~----------------------------------~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~ 149 (247)
T cd03275 104 INGKVVSLKEY----------------------------------NEELEKINILVKARNFLVFQGDVESIASKNPPGKR 149 (247)
T ss_pred ECCEEecHHHH----------------------------------HHHHHHhCCCCCCCeEEEECCchhhhhhccCcchh
Confidence 1112333444 444455554321110 12222222222
Q ss_pred --CCCCCChHHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHhcCEEE
Q psy13234 1071 --RGLKLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEIL 1143 (1192)
Q Consensus 1071 --rG~~LSGGQKQRIALARALLr----dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~aDrIl 1143 (1192)
....||||||||++||||+.. +|++++|||||++||.++...+.+.|++..+ +.|+|+|||+.+.+..||+|+
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence 225799999999999999975 4899999999999999999999999998865 789999999999999999999
Q ss_pred EEe
Q psy13234 1144 VMH 1146 (1192)
Q Consensus 1144 VLe 1146 (1192)
+|.
T Consensus 230 ~~~ 232 (247)
T cd03275 230 GVY 232 (247)
T ss_pred EEE
Confidence 986
No 383
>KOG0065|consensus
Probab=99.88 E-value=7.2e-23 Score=256.92 Aligned_cols=206 Identities=25% Similarity=0.346 Sum_probs=167.1
Q ss_pred CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC--CCCceEEECCeecCCCChHhhcccEEEEcCCC
Q psy13234 910 GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD--VESGDIFIDNQNIKTVSQASLRQAIGVVPQDT 987 (1192)
Q Consensus 910 ~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd--p~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp 987 (1192)
.+..|+|++ .-++||.- +|++|+||||||||++.|.|=-. ..+|+|+|||.+..+ +..++.+|||.|++
T Consensus 803 ~~qLL~~V~---G~~kPG~L---TALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~D 873 (1391)
T KOG0065|consen 803 TRQLLNNVS---GAFKPGVL---TALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQD 873 (1391)
T ss_pred ceEhhhcCc---eEecCCce---eehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeeccc
Confidence 356788998 89999998 99999999999999999998643 357999999998765 88999999999855
Q ss_pred -ccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcc
Q psy13234 988 -VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDT 1066 (1192)
Q Consensus 988 -~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT 1066 (1192)
++=.-||||-++|.. + +|.|..-+.. --.+-++++++..++.+. =|.
T Consensus 874 iH~~~~TVrESL~fSA-----------~---------LRlp~~v~~~-----ek~~yVe~Vi~lleL~~~-------~da 921 (1391)
T KOG0065|consen 874 IHSPELTVRESLRFSA-----------A---------LRLPKEVSDE-----EKYEYVEEVIELLELKEY-------ADA 921 (1391)
T ss_pred ccCcccchHHHHHHHH-----------H---------HcCCCcCCHH-----HHHHHHHHHHHHhCchhh-------hhh
Confidence 465679999998752 1 2333322210 001335666666666554 366
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhH--HHhcCEE
Q psy13234 1067 QVGERGLKLSGGEKQRVAIARTLLKAP-QIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLST--IIHADEI 1142 (1192)
Q Consensus 1067 ~VGErG~~LSGGQKQRIALARALLrdP-~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLST--I~~aDrI 1142 (1192)
.||.-|..||..||.|+.||=-|..|| .||.||||||+||+++...|.+.++++. .|+|+++-=|++|. .+..|++
T Consensus 922 iVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~L 1001 (1391)
T KOG0065|consen 922 LVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDEL 1001 (1391)
T ss_pred hccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHH
Confidence 799999999999999999999999999 8999999999999999999999999875 57999999999985 5789999
Q ss_pred EEEe-CCEEEEEcCH
Q psy13234 1143 LVMH-AGEIVERGRH 1156 (1192)
Q Consensus 1143 lVLe-~G~IvE~Gth 1156 (1192)
+.|+ .|+.|-.|+.
T Consensus 1002 LLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 1002 LLLKRGGQTVYFGPL 1016 (1391)
T ss_pred HHHhcCCeEEEecCc
Confidence 9997 5689988763
No 384
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.86 E-value=1.3e-22 Score=207.98 Aligned_cols=194 Identities=27% Similarity=0.416 Sum_probs=160.1
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCC-CccccccHHHHHhc
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD-TVLFNNSIKFNIQY 1000 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQD-p~LFnGTIreNI~~ 1000 (1192)
..+.+|+. +-+|||+|||||||+..+.|+.+ -+|+|.++|.|++.++..+|-++=+|..|. .-.|.-.+..-+++
T Consensus 20 ~qv~aGe~---~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L 95 (248)
T COG4138 20 GEVRAGEI---LHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTL 95 (248)
T ss_pred cccccceE---EEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhh
Confidence 55556665 99999999999999999999875 579999999999999999999999999875 44788888888887
Q ss_pred cccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHH
Q psy13234 1001 ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEK 1080 (1192)
Q Consensus 1001 G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQK 1080 (1192)
-.|+ .++ .+++.+++++-++. -.+|..-..|||||.
T Consensus 96 ~qP~---~~~------------------------------a~~i~~i~~~L~l~-----------DKL~Rs~~qLSGGEW 131 (248)
T COG4138 96 HQPD---KTR------------------------------TELLNDVAGALALD-----------DKLGRSTNQLSGGEW 131 (248)
T ss_pred cCch---HHH------------------------------HHHHHHHHhhhccc-----------chhhhhhhhcCcccc
Confidence 6654 111 12333344444443 334555668999999
Q ss_pred HHHHHHHHhcC-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChh-HHHhcCEEEEEeCCEEE
Q psy13234 1081 QRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS-TIIHADEILVMHAGEIV 1151 (1192)
Q Consensus 1081 QRIALARALLr-------dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLS-TI~~aDrIlVLe~G~Iv 1151 (1192)
||+-+|-..+. +.++|++|||-++||...+..+-+.|.++++ |+|+|+-.|+|+ |+++||++..++.|++.
T Consensus 132 QRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~ 211 (248)
T COG4138 132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLL 211 (248)
T ss_pred eeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEE
Confidence 99999988874 3479999999999999999999999988875 699999999997 99999999999999999
Q ss_pred EEcCHHHHHhcC
Q psy13234 1152 ERGRHEELLERN 1163 (1192)
Q Consensus 1152 E~GtheELL~~~ 1163 (1192)
.+|+.+|.+..+
T Consensus 212 ~~G~~~eVlt~~ 223 (248)
T COG4138 212 ASGRREEVLTPP 223 (248)
T ss_pred eecchhhhcChH
Confidence 999999998653
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=4.8e-21 Score=241.97 Aligned_cols=97 Identities=33% Similarity=0.553 Sum_probs=88.9
Q ss_pred CCcc-cccCCCCCCChHHHHHHHHHHHhcC---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH
Q psy13234 1063 GYDT-QVGERGLKLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1063 GyDT-~VGErG~~LSGGQKQRIALARALLr---dP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~ 1137 (1192)
|++. .+++....||||||||++|||||.+ +|+++||||||++||.++.+.+.+.|+++. ++.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5544 3678888999999999999999997 599999999999999999999999999875 4799999999999999
Q ss_pred hcCEEEEE------eCCEEEEEcCHHHH
Q psy13234 1138 HADEILVM------HAGEIVERGRHEEL 1159 (1192)
Q Consensus 1138 ~aDrIlVL------e~G~IvE~GtheEL 1159 (1192)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999986
No 386
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.85 E-value=9.5e-21 Score=223.34 Aligned_cols=199 Identities=26% Similarity=0.431 Sum_probs=158.4
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-hHhhcccEEEEcCC----C
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQD----T 987 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~-~~sLR~~Ig~VPQD----p 987 (1192)
..+++| |.+.+||- ++|.|--|||+|=++++|+|..++.+|+|.+||++++--+ .+.++.-|+|||-| -
T Consensus 274 ~~~dvS---f~vr~GEI---lGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~G 347 (500)
T COG1129 274 KVRDVS---FTVRAGEI---LGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEG 347 (500)
T ss_pred ceeCce---eEEeCCcE---EEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCc
Confidence 457788 99999888 9999999999999999999999999999999999887766 56899999999975 3
Q ss_pred ccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcC---CCCC
Q psy13234 988 VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSF---PDGY 1064 (1192)
Q Consensus 988 ~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~L---P~Gy 1064 (1192)
.+..-||++||.+... +.+.... -.+. .-+++-..+++.+| ..+.
T Consensus 348 l~l~~sI~~Ni~l~~l----------------~~~~~~~--~i~~--------------~~e~~~~~~~~~~l~Ik~~s~ 395 (500)
T COG1129 348 LVLDMSIAENITLASL----------------RRFSRRG--LIDR--------------RKERALAERYIRRLRIKTPSP 395 (500)
T ss_pred CcCCCcHHHheehHhh----------------hhhcccc--ccCh--------------HHHHHHHHHHHHhcCcccCCc
Confidence 4566799999976411 0000000 0110 00233334444444 2344
Q ss_pred cccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH-hcCEE
Q psy13234 1065 DTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII-HADEI 1142 (1192)
Q Consensus 1065 DT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~-~aDrI 1142 (1192)
+.+|+ +||||-.|++.|||.|..+|+||||||||-++|--+.++|.+.|+++. +|+++|+||-.+..+. .||||
T Consensus 396 ~~~v~----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRI 471 (500)
T COG1129 396 EQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRI 471 (500)
T ss_pred cchhh----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEE
Confidence 55655 699999999999999999999999999999999999999999999875 4699999999988765 89999
Q ss_pred EEEeCCEEEEE
Q psy13234 1143 LVMHAGEIVER 1153 (1192)
Q Consensus 1143 lVLe~G~IvE~ 1153 (1192)
+||++|+|+..
T Consensus 472 lVm~~Gri~~e 482 (500)
T COG1129 472 LVMREGRIVGE 482 (500)
T ss_pred EEEECCEEEEE
Confidence 99999999874
No 387
>KOG0056|consensus
Probab=99.84 E-value=4.4e-22 Score=227.41 Aligned_cols=141 Identities=37% Similarity=0.661 Sum_probs=127.3
Q ss_pred hhhhhhhhhhhhhheeeeecccccCCCCCCCCcchHHHHHHHHHHHhhccceeeccCccceeecccccceeeeehhHHHH
Q psy13234 12 VSGGLLLFSFTFTTYLVSLERNYRLPTAPPQGHGLVLLVFWTMLLIFANLTFVNLKRLDWWFSLKTLDDKIEMYIFVVYY 91 (1192)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (1192)
.+.+.-+|+|.|+.++++.||+ +|+.|+ ||++|+.+++.+|+++++|+. |.++|.+|+++|.+|+.+|
T Consensus 96 ~~~~~~~~~~~~~l~~~~~~r~--~~~~~~------ll~~~t~a~~~~~l~~~~~~~----~~~~t~~~q~~l~~~v~~~ 163 (790)
T KOG0056|consen 96 AFCVSKLFFWILSLCLFSKERN--QPSTPI------LLLAWTAAFLIECLALTDWKK----YFEPTSKNQGDLTLYVIRL 163 (790)
T ss_pred HHhhHHHHhcccccceeeeecc--cccchH------HHHHHHHHHHHhhhHHHhHHH----HhcccccccchhHHHHHHH
Confidence 3455667999999999999999 888876 999999999999999999999 7899999999999999999
Q ss_pred HHHHHHhhhcccCCCCCCCCcccccCCCCCccccchhhhhccCCCchhhhHHHHHHhhccccccCcCcchhHHHHHHHHH
Q psy13234 92 VGSLTLFVLGLKAPGLTHTRNYYNLNGDSSSSQNNLESERLMHTGSTWAGAAKKIKTLAPFLWPKKSALLKLQVIICILL 171 (1192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (1192)
+.+..+||||++|| . +.++.++ + .+|+|++.++|.++++||+||+|+..+|+.|++|++|
T Consensus 164 ~~s~~~fvl~l~a~----------~---~ndt~~~--s-----~~s~~~n~~rk~~~~~~ylwp~~~~alql~v~~cl~l 223 (790)
T KOG0056|consen 164 ALSTVVFVLGLVAP----------L---DNDSGCS--S-----RESAWRNLSRKLRTVAPYLWPTKSIALQLRVVFCLFL 223 (790)
T ss_pred HHHHeeeeEEEecc----------c---ccccccc--c-----cccccccccceeEEeccccccCCCcchhHHHHHHHHH
Confidence 99999999999999 1 1111111 1 5899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccc
Q psy13234 172 LIIARVINLFVPI 184 (1192)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (1192)
++++|++|+++||
T Consensus 224 l~i~rli~~~~pi 236 (790)
T KOG0056|consen 224 LIIGRLINVSLPI 236 (790)
T ss_pred HHHHHHHhhhhHH
Confidence 9999999999999
No 388
>KOG0927|consensus
Probab=99.84 E-value=4.5e-21 Score=223.10 Aligned_cols=195 Identities=25% Similarity=0.355 Sum_probs=151.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+.|++|+|+++.-++++++ |-+-.+.. +|+|||+|+|||||+|++.|...|+.|.|.-.-+. +
T Consensus 392 ~~nv~F~y~~~~~iy~~l~---fgid~~sr---vAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~ 454 (614)
T KOG0927|consen 392 VQNVSFGYSDNPMIYKKLN---FGIDLDSR---VALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------K 454 (614)
T ss_pred EeccccCCCCcchhhhhhh---cccCcccc---eeEecCCCCchhhhHHHHhhccccccccccccccc-----------c
Confidence 8999999998777788887 87777777 99999999999999999999999999998754332 2
Q ss_pred EEEEcC---CCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQ---DTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQ---Dp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
+++-.| +-...+-|.-||+. .+ +|| +-+.+++...|.+.|+...
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~------------~~------------~~~---------~~~~e~~r~ilgrfgLtgd 501 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMM------------PK------------FPD---------EKELEEMRSILGRFGLTGD 501 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHH------------Hh------------ccc---------cchHHHHHHHHHHhCCCcc
Confidence 332222 22233333334432 11 222 1235677788899988754
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI 1136 (1192)
.+ +-+++ +||+|||.||++||.+++.|.||+|||||++||.+|-..+.++|.+. .-++|.|+|+.-.|
T Consensus 502 ~q------~~p~~----~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI 569 (614)
T KOG0927|consen 502 AQ------VVPMS----QLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLI 569 (614)
T ss_pred cc------ccchh----hcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHH
Confidence 43 33333 79999999999999999999999999999999999999999999886 56899999999999
Q ss_pred Hh-cCEEEEEeCCEEEEE-cCH
Q psy13234 1137 IH-ADEILVMHAGEIVER-GRH 1156 (1192)
Q Consensus 1137 ~~-aDrIlVLe~G~IvE~-Gth 1156 (1192)
.+ |++|.+.+||.+... |..
T Consensus 570 ~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 570 SQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHHHhHhhccCceeecCccH
Confidence 76 899999999988763 443
No 389
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.83 E-value=5.1e-21 Score=210.98 Aligned_cols=206 Identities=18% Similarity=0.239 Sum_probs=142.2
Q ss_pred ecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceE--EECCeecCCCChHhhcccE---EEEcCCCccccccHHHHH
Q psy13234 924 ALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDI--FIDNQNIKTVSQASLRQAI---GVVPQDTVLFNNSIKFNI 998 (1192)
Q Consensus 924 i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI--~IDG~DI~~i~~~sLR~~I---g~VPQDp~LFnGTIreNI 998 (1192)
..|...||+++|+|++|+|||||++.+.+..+...+.+ .+-...-+..+..++.+.+ -++.+- +.+-...+
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~----~~~~~~~~ 85 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF----DEPPERHV 85 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC----CCCHHHHH
Confidence 33455566699999999999999999999988764432 2222222223444444444 011100 00111111
Q ss_pred hccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChH
Q psy13234 999 QYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGG 1078 (1192)
Q Consensus 999 ~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGG 1078 (1192)
+. ...+.+.| ..+ .+ .+. +..=+-|.+.++|++|++.+|+.|.++|||
T Consensus 86 ~~------~~~~~~~a-----~~~-~~--~G~------------------~vll~iDei~r~a~a~~ev~~~~G~~~sgG 133 (249)
T cd01128 86 QV------AEMVLEKA-----KRL-VE--HGK------------------DVVILLDSITRLARAYNTVVPPSGKILSGG 133 (249)
T ss_pred HH------HHHHHHHH-----HHH-HH--CCC------------------CEEEEEECHHHhhhhhhhccccCCCCCCCC
Confidence 00 00111111 000 00 000 112244678899999999999999999999
Q ss_pred H--------HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHc-CCceEEEEecChhHHHhcCEEEEEeCC
Q psy13234 1079 E--------KQRVAIARTLLKAPQIVLLDEATSALDTKTERN-IQSALNRVC-ASRTTIIVAHRLSTIIHADEILVMHAG 1148 (1192)
Q Consensus 1079 Q--------KQRIALARALLrdP~ILLLDEATSALD~eTE~~-Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIlVLe~G 1148 (1192)
| |||+++||+++++++|.+| ||+++|+.+|.. ++ +.+.. .++|.|+++||+++..++|.|.||+.|
T Consensus 134 ~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~ 209 (249)
T cd01128 134 VDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSG 209 (249)
T ss_pred cChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCC
Confidence 9 9999999999999999999 999999877765 54 44444 579999999999999999999999999
Q ss_pred EEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1149 EIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1149 ~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
++ |++++..++.|+.+|+.+.
T Consensus 210 sr-----~~~ll~~~~~~~~~~~~r~ 230 (249)
T cd01128 210 TR-----KEELLLDPEELQRMWLLRR 230 (249)
T ss_pred Cc-----cchhhCCHHHHHHHHHHHH
Confidence 97 8999999999999987665
No 390
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.83 E-value=1.3e-17 Score=177.22 Aligned_cols=215 Identities=24% Similarity=0.382 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 630 RSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTF 709 (1192)
Q Consensus 630 rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~ 709 (1192)
......+.+.+...++|.++++|+++.|.++|+++++|++++++++|++.+++........++..+...+.. +.+++..
T Consensus 61 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 139 (275)
T PF00664_consen 61 YFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFS-LILLFFI 139 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhh-hhccccc
Confidence 334456788899999999999999999999999999999999999999999999887777777666544443 3455667
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q psy13234 710 STWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQ 789 (1192)
Q Consensus 710 ~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~ 789 (1192)
+|.++++.++..+++.++...+.++..+..++..++.++..+...|.++|+++||+||.|+++.+++++..++..+...+
T Consensus 140 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 219 (275)
T PF00664_consen 140 SWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFK 219 (275)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888888899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Q psy13234 790 NSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPL 845 (1192)
Q Consensus 790 ~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL 845 (1192)
......+.......+...+.++...++++..+.+|++|+|+++++.++..++..|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 220 YAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 88888888888877777666666666665426788999999999999999999985
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=8.3e-20 Score=194.93 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=70.8
Q ss_pred CCCCCChHHHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC----CceEEEEecChhHHHhcCEE
Q psy13234 1071 RGLKLSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNRVCA----SRTTIIVAHRLSTIIHADEI 1142 (1192)
Q Consensus 1071 rG~~LSGGQKQRIALARAL----LrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~----grTvIvIAHRLSTI~~aDrI 1142 (1192)
...+||||||||++||||+ +.+|+++||||||++||..+...+.+.|++..+ ++|+|+++|+++.+.++|+|
T Consensus 106 ~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v 185 (198)
T cd03276 106 DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDV 185 (198)
T ss_pred cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccce
Confidence 3447999999999999999 699999999999999999999999999988643 25889999999999999999
Q ss_pred EEEeCCE
Q psy13234 1143 LVMHAGE 1149 (1192)
Q Consensus 1143 lVLe~G~ 1149 (1192)
-||..|+
T Consensus 186 ~~~~~~~ 192 (198)
T cd03276 186 KVFRMKD 192 (198)
T ss_pred eEEEecC
Confidence 9998754
No 392
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=202.29 Aligned_cols=219 Identities=22% Similarity=0.351 Sum_probs=169.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeec-CCCChHhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-KTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI-~~i~~~sLR~ 978 (1192)
+++++..-+.+.+.++++| |.+.+||- +||.|-+|-|-|-|+.+|.|+.+|.+|+|.++|+|+ ...+....|+
T Consensus 260 V~~L~v~~~~~~~~v~~vs---~~Vr~GEI---vGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 260 VEDLSVKDRRGVTAVKDVS---FEVRAGEI---VGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred EeeeEeecCCCCceeeeee---eEEecCcE---EEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 6666665444456788898 99999998 999999999999999999999999999999999997 6777766665
Q ss_pred -cEEEEcCCCc----cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 979 -AIGVVPQDTV----LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 979 -~Ig~VPQDp~----LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
.++|||.|.+ ..+-|+.||+.+++-+.. +| .+. ++ .+.+++.+ ..
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~--------------~~-~~~--g~--------l~~~~i~~-----~a 383 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK--------------PF-SRG--GF--------LDRRAIRK-----FA 383 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhcccc--------------cc-ccc--cc--------cCHHHHHH-----HH
Confidence 5999999873 667799999987642210 00 000 00 11111111 11
Q ss_pred HHHHhcC---CCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEE
Q psy13234 1054 HERILSF---PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIV 1129 (1192)
Q Consensus 1054 hd~I~~L---P~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvI 1129 (1192)
.+.|.++ +.|-+++++ +||||..||+-+||-+.++|++||..+||-+||..+.+.|.+.|.+.. +|+.+++|
T Consensus 384 ~~li~~fdVr~~~~~~~a~----~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLi 459 (501)
T COG3845 384 RELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLI 459 (501)
T ss_pred HHHHHHcCccCCCCCcchh----hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 2233332 445555544 799999999999999999999999999999999999999988886654 56999999
Q ss_pred ecChhHH-HhcCEEEEEeCCEEEEEcCHHH
Q psy13234 1130 AHRLSTI-IHADEILVMHAGEIVERGRHEE 1158 (1192)
Q Consensus 1130 AHRLSTI-~~aDrIlVLe~G~IvE~GtheE 1158 (1192)
+-.|+.+ .-||||.||.+|+++...+++|
T Consensus 460 S~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 460 SEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred ehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 9999976 5799999999999998877665
No 393
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.78 E-value=1.1e-18 Score=183.65 Aligned_cols=85 Identities=25% Similarity=0.362 Sum_probs=78.1
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC-ceEEEEec
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAH 1131 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALL----rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g-rTvIvIAH 1131 (1192)
+..+|+|-.|++ ||||||||++||||+. ++|+++++||||++||+++.+.+.+.+.+..++ +|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 445899999998 9999999999999984 799999999999999999999999999887554 89999999
Q ss_pred ChhHHHhcCEEEEEeC
Q psy13234 1132 RLSTIIHADEILVMHA 1147 (1192)
Q Consensus 1132 RLSTI~~aDrIlVLe~ 1147 (1192)
+++.+..+|+++.+++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999975
No 394
>KOG0927|consensus
Probab=99.78 E-value=6.9e-19 Score=205.10 Aligned_cols=231 Identities=21% Similarity=0.269 Sum_probs=145.3
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~ 974 (1192)
.+. +++++++|.+ ...+++.. +.+.+|++ .||+|++||||||+++.+.+--.|..=++-+
T Consensus 75 dvk--~~sls~s~~g-~~l~kd~~---~El~~g~r---ygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~----------- 134 (614)
T KOG0927|consen 75 DVK--IESLSLSFHG-VELIKDVT---LELNRGRR---YGLIGPNGSGKSTFLRAIAGREVPIPEHIDF----------- 134 (614)
T ss_pred cce--eeeeeeccCC-ceeeeeee---EEecCCce---EEEEcCCCCcHhHHHHHHhcCCCCCCcccch-----------
Confidence 445 8888888864 46778888 99999999 9999999999999999999998886544421
Q ss_pred hhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhc-cCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 975 SLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERIL-SFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~-~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
....|+- ..|...-+.+.-..++.|+..-+....+++...- .-.|..+.-+.+.++.|.+-.++ +.+.+
T Consensus 135 ------y~ls~e~---~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~-k~~~i 204 (614)
T KOG0927|consen 135 ------YLLSREI---EPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEA-KAAKI 204 (614)
T ss_pred ------hhhcccC---CCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHH-HHHHH
Confidence 1112211 1222222222211122222222222222222210 00011111111111111111110 11111
Q ss_pred HHHHhcCCCCCcc-cccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecC
Q psy13234 1054 HERILSFPDGYDT-QVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT-~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHR 1132 (1192)
-. ..|... .....-..||||||-|+||||||+.+|++|+|||||.+||.++-.-+.+-|.+.... |+++++|.
T Consensus 205 l~-----glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~ 278 (614)
T KOG0927|consen 205 LH-----GLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHS 278 (614)
T ss_pred HH-----hcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecc
Confidence 10 112222 222334579999999999999999999999999999999999999999999886433 89999999
Q ss_pred hhHHHh-cCEEEEEeCCE-EEEEcCHHHHHh
Q psy13234 1133 LSTIIH-ADEILVMHAGE-IVERGRHEELLE 1161 (1192)
Q Consensus 1133 LSTI~~-aDrIlVLe~G~-IvE~GtheELL~ 1161 (1192)
-.++.. |-.|+.|++++ +.-.|++++...
T Consensus 279 QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 279 QDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred hhhhhhHhhhhheecccceeeecCCHHHHhh
Confidence 999965 99999999999 667799988864
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=1.7e-18 Score=198.32 Aligned_cols=184 Identities=23% Similarity=0.348 Sum_probs=134.2
Q ss_pred ceeeecCCCCccccccccceeecCCc--ccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccE
Q psy13234 903 DQFGFRKGKGTRDAIGCLRMIALESQ--LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAI 980 (1192)
Q Consensus 903 VsFsY~~~~~vL~~ISvL~~~i~~Ge--~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~I 980 (1192)
.-++|+.-+..+.+.. +.+.+|+ .||.++++||+|-||||++++|+|..+|++|+ ..+ -+|
T Consensus 341 ~lv~y~~~~k~~g~F~---L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~v 403 (591)
T COG1245 341 TLVEYPDLKKTYGDFK---LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKV 403 (591)
T ss_pred eeeecchheeecCceE---EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceE
Confidence 3345554333444554 6666665 67889999999999999999999999999998 222 258
Q ss_pred EEEcCCCc-cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 981 GVVPQDTV-LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 981 g~VPQDp~-LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
+|=||-.. =|+||+++=+.-..++ ++.++|. ..|+ ++--++++.
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~--------------------~~~~s~~---------~~ei---~~pl~l~~i--- 448 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRS--------------------AFGSSYF---------KTEI---VKPLNLEDL--- 448 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhh--------------------hcccchh---------HHhh---cCccchHHH---
Confidence 99999322 3899998877422111 0111111 1111 122233332
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHH
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~ 1137 (1192)
+|.+| ..|||||-||+|||-||.|++++++||||+|.||.+..-.+-++|++... ++|.++|-|++..+.
T Consensus 449 ----~e~~v----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~d 520 (591)
T COG1245 449 ----LERPV----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMID 520 (591)
T ss_pred ----Hhccc----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhh
Confidence 33344 46999999999999999999999999999999999998888999998765 489999999999885
Q ss_pred -hcCEEEEEe
Q psy13234 1138 -HADEILVMH 1146 (1192)
Q Consensus 1138 -~aDrIlVLe 1146 (1192)
-+||++|.+
T Consensus 521 yvsDr~ivF~ 530 (591)
T COG1245 521 YVSDRLIVFE 530 (591)
T ss_pred hhhceEEEEe
Confidence 589999997
No 396
>KOG0062|consensus
Probab=99.76 E-value=5.2e-18 Score=196.99 Aligned_cols=208 Identities=25% Similarity=0.366 Sum_probs=160.1
Q ss_pred cccceeeecCCC-CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRKGK-GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~-~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
+.+|+|.|++++ +.+.+.+ .....-.+ +++||+.|.||||+++++.+-..|..|.+-+.+ |.
T Consensus 365 i~~V~f~y~p~~y~~~~~~~---~d~e~~sR---i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 365 ISYVAFEYTPSEYQWRKQLG---LDRESDSR---ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred EEeeeccCCCcchhhhhccC---Cccchhhh---hheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 888999998876 6777776 66666666 999999999999999999999999999998766 67
Q ss_pred cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
+|+|-.|.-+=| ..-|. +.=+..+++ +|. -+++|+.+.|...|+...+
T Consensus 428 ri~~f~Qhhvd~---l~~~v-------~~vd~~~~~-----------~pG----------~~~ee~r~hl~~~Gl~g~l- 475 (582)
T KOG0062|consen 428 RIKYFAQHHVDF---LDKNV-------NAVDFMEKS-----------FPG----------KTEEEIRRHLGSFGLSGEL- 475 (582)
T ss_pred eecchhHhhhhH---HHHHh-------HHHHHHHHh-----------CCC----------CCHHHHHHHHHhcCCCchh-
Confidence 899999966533 11111 111222222 221 1577777777777665433
Q ss_pred cCCCCCcccccCCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHH
Q psy13234 1059 SFPDGYDTQVGERG-LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG-~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~ 1137 (1192)
.-.. ..||||||-|+++|-+.+.+|.+|||||||..||-++-..+-++|+.. +--||+|||+.+.+.
T Consensus 476 ----------a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 476 ----------ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFIS 543 (582)
T ss_pred ----------hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHh
Confidence 3333 369999999999999999999999999999999999999999999876 346999999999997
Q ss_pred -hcCEEEEEeCCEEEEE-cCHHHHHhcCcHHHHHHHHhhc
Q psy13234 1138 -HADEILVMHAGEIVER-GRHEELLERNGVYASMWIQQNT 1175 (1192)
Q Consensus 1138 -~aDrIlVLe~G~IvE~-GtheELL~~~G~Ya~L~~~Q~~ 1175 (1192)
-|+++.+.+||+|... |+. ..|+++...|..
T Consensus 544 ~~c~E~Wvve~g~vt~ieg~~-------~~yKkl~~~e~~ 576 (582)
T KOG0062|consen 544 SLCKELWVVEDGKVTPIEGGI-------DKYKKLLGAELR 576 (582)
T ss_pred hcCceeEEEcCCcEEeeeccH-------HHHHHHHHHHHh
Confidence 4999999999999863 322 237777766654
No 397
>KOG0066|consensus
Probab=99.76 E-value=5.1e-18 Score=192.12 Aligned_cols=198 Identities=26% Similarity=0.385 Sum_probs=143.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+.+|+|.|+..+|..+.++ |-+---.. +|||||+|.|||||++||.|-.+|+.|+.+=+- |-+
T Consensus 589 lH~VtFgy~gqkpLFkkld---FGiDmdSR---iaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~ 651 (807)
T KOG0066|consen 589 LHDVTFGYPGQKPLFKKLD---FGIDMDSR---IAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLR 651 (807)
T ss_pred cccccccCCCCCchhhccc---ccccccce---eEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eee
Confidence 8999999999888888887 76666666 999999999999999999999999999887433 456
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
||+--|.. .|-++. +-|+.|..+ +. |.-|| ++-.++|-.-|+...
T Consensus 652 iG~FdQh~-------~E~L~~---Eetp~EyLq--r~---------FNlpy-----------q~ARK~LG~fGL~sH--- 696 (807)
T KOG0066|consen 652 IGWFDQHA-------NEALNG---EETPVEYLQ--RK---------FNLPY-----------QEARKQLGTFGLASH--- 696 (807)
T ss_pred eechhhhh-------HHhhcc---ccCHHHHHH--Hh---------cCCCh-----------HHHHHHhhhhhhhhc---
Confidence 88877753 244432 223333322 22 22222 333444444444221
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhc
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHA 1139 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~a 1139 (1192)
-.|. .-..||||||-|+|+|---++.|+||||||||.+||-++-..+-++|.+. +-.||+|+|+-..|...
T Consensus 697 ----AHTi---kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT 767 (807)
T KOG0066|consen 697 ----AHTI---KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVET 767 (807)
T ss_pred ----cceE---eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeec
Confidence 1121 12369999999999999999999999999999999999999999999987 45799999998888765
Q ss_pred C-EEEEEeCCEEEEE-cCHHH
Q psy13234 1140 D-EILVMHAGEIVER-GRHEE 1158 (1192)
Q Consensus 1140 D-rIlVLe~G~IvE~-GtheE 1158 (1192)
| ...|+++-.|-|. |.+++
T Consensus 768 ~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 768 DCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CceEEEEccCChhhccccHHH
Confidence 5 4556666655543 55543
No 398
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=6.4e-18 Score=188.97 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=71.0
Q ss_pred CCChHHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCE
Q psy13234 1074 KLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 1149 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALLr----dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~ 1149 (1192)
.||||||||+++||+++. +|++++|||||++||+++.+.+.+.+++..+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997653 9999999999999999999999999999888899999999999999999999999873
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.74 E-value=6.4e-18 Score=182.52 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=74.2
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--C-ceEE
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIART----LLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--S-RTTI 1127 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARA----LLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--g-rTvI 1127 (1192)
|.+.++|.+.+.. ..+...||||||||+++|++ ++.+|+++++||||++||+.+.+.+.+.|.+..+ + .|+|
T Consensus 108 e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~vi 186 (213)
T cd03277 108 ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYF 186 (213)
T ss_pred hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEE
Confidence 3445667666543 45667899999999887754 4689999999999999999999999999988754 3 4799
Q ss_pred EEecChhHH-HhcC--EEEEEeCCE
Q psy13234 1128 IVAHRLSTI-IHAD--EILVMHAGE 1149 (1192)
Q Consensus 1128 vIAHRLSTI-~~aD--rIlVLe~G~ 1149 (1192)
+|||++..+ ..+| +|++|++|+
T Consensus 187 iith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 187 LITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred EEchhhccCCcccCceEEEEEecCc
Confidence 999998544 4455 888888876
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.72 E-value=1.7e-17 Score=176.87 Aligned_cols=80 Identities=18% Similarity=0.078 Sum_probs=70.6
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCceEEEEecChhHHHhcCEEEEEeCCEE
Q psy13234 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS-ALNRVC-ASRTTIIVAHRLSTIIHADEILVMHAGEI 1150 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~-aL~~l~-~grTvIvIAHRLSTI~~aDrIlVLe~G~I 1150 (1192)
..+|+|+|||..|++++ .+|+++++||||+++|+++.+.+.. .++++. .++|+|++||.......||++++|++|++
T Consensus 90 s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l 168 (200)
T cd03280 90 STFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASM 168 (200)
T ss_pred chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEE
Confidence 47999999999999985 8999999999999999999988854 566554 36899999999887889999999999999
Q ss_pred EEE
Q psy13234 1151 VER 1153 (1192)
Q Consensus 1151 vE~ 1153 (1192)
...
T Consensus 169 ~~~ 171 (200)
T cd03280 169 EFD 171 (200)
T ss_pred EEe
Confidence 765
No 401
>KOG0065|consensus
Probab=99.72 E-value=2e-17 Score=208.53 Aligned_cols=214 Identities=26% Similarity=0.383 Sum_probs=170.3
Q ss_pred CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC---CCceEEECCeecCCCChHhhcccEEEEcCCC
Q psy13234 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV---ESGDIFIDNQNIKTVSQASLRQAIGVVPQDT 987 (1192)
Q Consensus 911 ~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp---~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp 987 (1192)
..++++++ ..++||+. +.+.||.|||||||++.|.|-.+- ..|+|..||.|.++... ++.++|++|+.
T Consensus 128 ~~il~~~s---g~~~pg~m---~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~D 198 (1391)
T KOG0065|consen 128 IQILKDIS---GIIKPGEM---TLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQD 198 (1391)
T ss_pred ceeecCcc---eeEcCCce---EEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccc
Confidence 36889999 99999999 999999999999999999998764 35799999999999877 88999999988
Q ss_pred cccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCC-CCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCc
Q psy13234 988 VLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPD-GYDTQYARINASEEEVKEAATSADIHERILSFPDGYD 1065 (1192)
Q Consensus 988 ~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd-~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyD 1065 (1192)
+-|. -|+||-|.|... | +.|. .+| +.+++|..++ .++--=.|..|....|
T Consensus 199 vH~p~lTVreTldFa~r----------c----------k~~~~r~~------~~~R~e~~~~--~~d~~lkilGL~~~~d 250 (1391)
T KOG0065|consen 199 VHFPELTVRETLDFAAR----------C----------KGPGSRYD------EVSRREKLAA--MTDYLLKILGLDHCAD 250 (1391)
T ss_pred cccceeEEeehhhHHHh----------c----------cCCccccc------cccHHHHHHH--HHHHHHHHhCchhhcc
Confidence 8887 599999987521 1 0000 011 1122221111 0111112445677899
Q ss_pred ccccCCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh--HHHhcC
Q psy13234 1066 TQVGERG-LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS--TIIHAD 1140 (1192)
Q Consensus 1066 T~VGErG-~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS--TI~~aD 1140 (1192)
|.||.+. ...|||||.|+++|-++..+|+++.+||+|-+||+.|.-++.++|++..+ +.|.++.=|+.+ +..-.|
T Consensus 251 T~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD 330 (1391)
T KOG0065|consen 251 TLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFD 330 (1391)
T ss_pred ceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhh
Confidence 9999864 46999999999999999999999999999999999999999999987754 578888778765 678899
Q ss_pred EEEEEeCCEEEEEcCHHHHHh
Q psy13234 1141 EILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1141 rIlVLe~G~IvE~GtheELL~ 1161 (1192)
+|++|.+|+++-+|+.++.+.
T Consensus 331 ~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 331 DVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred heeeeeccceEEeccHHHHHH
Confidence 999999999999999999874
No 402
>KOG0062|consensus
Probab=99.71 E-value=1.9e-17 Score=192.38 Aligned_cols=201 Identities=22% Similarity=0.308 Sum_probs=133.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
.++.+.+|. ++..|.+-+ ++...|.. .|+|||+|+|||||+|.|.. |.|.+-..+ +.+|--
T Consensus 83 ~~~fdLa~G-~k~LL~~a~---L~L~~GrR---YGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 83 IDNFDLAYG-GKILLNKAN---LTLSRGRR---YGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred eeeeeeeec-chhhhcCCc---eeeecccc---cceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 445555665 456777777 88899999 99999999999999999998 444332211 011100
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHH-HHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE-AATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~-AL~~A~Lhd~I~ 1058 (1192)
-...-| ..+=.+|-+.-+... ++++... .+-+|+.+ +|.-.|..+...
T Consensus 144 ~t~~~~-~~l~~D~~~~dfl~~-----e~~l~~~-------------------------~~l~ei~~~~L~glGFt~emq 192 (582)
T KOG0062|consen 144 DTEALQ-SVLESDTERLDFLAE-----EKELLAG-------------------------LTLEEIYDKILAGLGFTPEMQ 192 (582)
T ss_pred chHHHh-hhhhccHHHHHHHHh-----hhhhhcc-------------------------chHHHHHHHHHHhCCCCHHHH
Confidence 000001 111222222222110 1111000 02344444 556666655555
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~ 1138 (1192)
..| -..||||=|=|+|||||++++|+||+|||||..||...-.-+.+-|.+.. .|+|+|+|+-+.+.+
T Consensus 193 ~~p----------t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 193 LQP----------TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNT 260 (582)
T ss_pred hcc----------ccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHH
Confidence 444 23699999999999999999999999999999999999999999998763 899999999998854
Q ss_pred -cCEEEEEeCCEEE-EEcCHHHHHhc
Q psy13234 1139 -ADEILVMHAGEIV-ERGRHEELLER 1162 (1192)
Q Consensus 1139 -aDrIlVLe~G~Iv-E~GtheELL~~ 1162 (1192)
|--|+.+++=++- ..|++++..+.
T Consensus 261 V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 261 VCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 7778888876663 45888777653
No 403
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.69 E-value=1.1e-16 Score=168.51 Aligned_cols=220 Identities=25% Similarity=0.356 Sum_probs=165.0
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCeecCCCChHhhccc----EEEEc
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD----VESGDIFIDNQNIKTVSQASLRQA----IGVVP 984 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd----p~sGsI~IDG~DI~~i~~~sLR~~----Ig~VP 984 (1192)
+.+++| ++..+|+. -++||+||||||-++|.+.|..+ .+.-+.+.|++|+-++++..-|+- |+.+.
T Consensus 22 ~VD~v~---ltlnEGEi---~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIF 95 (330)
T COG4170 22 AVDRVS---MTLNEGEI---RGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIF 95 (330)
T ss_pred eeeeee---eeecccee---eeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhh
Confidence 445666 88888887 99999999999999999999865 466788899999999998887764 56788
Q ss_pred CCCccccccHHHHHhccccCCCHH---HHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH--HHhc
Q psy13234 985 QDTVLFNNSIKFNIQYARINASEE---EVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE--RILS 1059 (1192)
Q Consensus 985 QDp~LFnGTIreNI~~G~~~asdE---eV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd--~I~~ 1059 (1192)
|||.=-- |.+++ ++++.. -.|.|. ..+|.++--...+-.+.|.++|+.| .|++
T Consensus 96 QeP~sCL------------DPS~~iG~QlIq~I---P~wTfk-------grWWq~F~WrKrrAIeLLHrVGIKdHkDIM~ 153 (330)
T COG4170 96 QEPQSCL------------DPSERVGRQLIQNI---PAWTYK-------GRWWQRFGWRKRRAIELLHRVGIKDHKDIMR 153 (330)
T ss_pred cCchhhc------------ChHHHHHHHHHhhC---cccccc-------chHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence 8885221 11111 222221 111111 1345555556667777888999854 4543
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHH
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~ 1137 (1192)
.|-. .|--||-|++-||-|+..+|++||-||||.++|+.|..+|.+.|.++-+ +.|++.|+|++.++.
T Consensus 154 ---SYP~-------ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is 223 (330)
T COG4170 154 ---SYPY-------ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMIS 223 (330)
T ss_pred ---hCcc-------hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHH
Confidence 1222 2455677999999999999999999999999999999999999987755 478888999999996
Q ss_pred -hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHHH
Q psy13234 1138 -HADEILVMHAGEIVERGRHEELLERN-GVYASMW 1170 (1192)
Q Consensus 1138 -~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L~ 1170 (1192)
-||+|-||--|+-+|.+.-+++++.. ..|.+-.
T Consensus 224 ~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTqAL 258 (330)
T COG4170 224 QWADKINVLYCGQTVESAPSEELVTMPHHPYTQAL 258 (330)
T ss_pred HHhhheEEEEecccccccchhHHhcCCCCchHHHH
Confidence 59999999999999999999999753 4565443
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.67 E-value=6.5e-16 Score=187.03 Aligned_cols=105 Identities=33% Similarity=0.548 Sum_probs=94.8
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEE
Q psy13234 1067 QVGERGLKLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEI 1142 (1192)
Q Consensus 1067 ~VGErG~~LSGGQKQRIALARALLrdP---~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrI 1142 (1192)
.+|.--..|||||.|||-||.-|.|++ -++||||||-+|-.+--+++++.|.++- +|.|||+|-|.|..|+.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 358888999999999999999999988 8999999999999999999999998875 569999999999999999999
Q ss_pred EEE------eCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1143 LVM------HAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1143 lVL------e~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
+-| +.|+|+..|||||+.+..+.|-.-+-
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yL 929 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYL 929 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCccchhHHHH
Confidence 998 57899999999999987666655443
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.65 E-value=1.8e-16 Score=163.79 Aligned_cols=73 Identities=26% Similarity=0.366 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHhcCEEEEEeC
Q psy13234 1075 LSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVMHA 1147 (1192)
Q Consensus 1075 LSGGQKQRIALARALLr----dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~aDrIlVLe~ 1147 (1192)
||+||+||+++||++.+ +|+++++|||++++|++....+.+.+.+..+ ++|+|++||+++....+|+++.|+.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99999999999999986 7899999999999999999999999987644 5899999999999999999999963
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.64 E-value=1.7e-15 Score=199.86 Aligned_cols=105 Identities=25% Similarity=0.373 Sum_probs=93.2
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHH
Q psy13234 1061 PDGYDTQVGERGLKLSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1061 P~GyDT~VGErG~~LSGGQKQRIALARALLrd---P~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI 1136 (1192)
--||=+ +|..-..|||||+|||-||.-|.++ +.++||||||.+|+.+.-+.+.+.++++. +|.|+|+|-|++..|
T Consensus 1687 GLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i 1765 (1809)
T PRK00635 1687 GLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALL 1765 (1809)
T ss_pred CCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 335554 5999999999999999999999876 78999999999999999999999998874 569999999999999
Q ss_pred HhcCEEEEE------eCCEEEEEcCHHHHHhcCcHH
Q psy13234 1137 IHADEILVM------HAGEIVERGRHEELLERNGVY 1166 (1192)
Q Consensus 1137 ~~aDrIlVL------e~G~IvE~GtheELL~~~G~Y 1166 (1192)
+.||.|+-| +.|+|+..||++|+.+....|
T Consensus 1766 ~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~ 1801 (1809)
T PRK00635 1766 KQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSL 1801 (1809)
T ss_pred HhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCc
Confidence 999999999 468999999999999765444
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.64 E-value=6.4e-16 Score=175.45 Aligned_cols=179 Identities=23% Similarity=0.395 Sum_probs=136.8
Q ss_pred CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcC--------CCCCCceEEECCeecCCCChHhhcccEEE
Q psy13234 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRF--------YDVESGDIFIDNQNIKTVSQASLRQAIGV 982 (1192)
Q Consensus 911 ~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl--------ydp~sGsI~IDG~DI~~i~~~sLR~~Ig~ 982 (1192)
..++++++ +++++|+. ++|||+|||||||++++++|. |.|++|.|.+--..++..-+.+
T Consensus 396 ryvlr~vN---L~ikpGdv---vaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge------- 462 (593)
T COG2401 396 RYVLRNLN---LEIKPGDV---VAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGE------- 462 (593)
T ss_pred eeeeecee---eEecCCCe---EEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcc-------
Confidence 45788888 99999999 999999999999999999986 6899999987543333221111
Q ss_pred EcCCCccccccHHHHHh--ccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcC
Q psy13234 983 VPQDTVLFNNSIKFNIQ--YARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSF 1060 (1192)
Q Consensus 983 VPQDp~LFnGTIreNI~--~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~L 1060 (1192)
-||.+=.-||-|.+. .|+++ .-.++|+.+|+.|.+.
T Consensus 463 --~Ep~f~~~tilehl~s~tGD~~--------------------------------------~AveILnraGlsDAvl-- 500 (593)
T COG2401 463 --YEPEFGEVTILEHLRSKTGDLN--------------------------------------AAVEILNRAGLSDAVL-- 500 (593)
T ss_pred --cccccCchhHHHHHhhccCchh--------------------------------------HHHHHHHhhccchhhh--
Confidence 134333446666663 12111 1124557788877654
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChhHHHh
Q psy13234 1061 PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1061 P~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLSTI~~ 1138 (1192)
|-... ..||-|||-|.-||+++-..|.+++.||.-|.||..|...+.+.|.+++ .+.|.++||||.+.+..
T Consensus 501 ---yRr~f----~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 501 ---YRRKF----SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred ---hhccH----hhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 22332 3599999999999999999999999999999999999999999999887 67999999999998865
Q ss_pred --cCEEEEEeCCEEE
Q psy13234 1139 --ADEILVMHAGEIV 1151 (1192)
Q Consensus 1139 --aDrIlVLe~G~Iv 1151 (1192)
=|+++.+.=|++.
T Consensus 574 L~PD~li~vgYg~v~ 588 (593)
T COG2401 574 LRPDTLILVGYGKVP 588 (593)
T ss_pred cCCceeEEeeccccc
Confidence 4999988777654
No 408
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.7e-15 Score=169.01 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=67.7
Q ss_pred CCCCCcccccCCCC----CCChHHHHHHHHHHHh---------cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceE
Q psy13234 1060 FPDGYDTQVGERGL----KLSGGEKQRVAIARTL---------LKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 1126 (1192)
Q Consensus 1060 LP~GyDT~VGErG~----~LSGGQKQRIALARAL---------LrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTv 1126 (1192)
-|+..|..+.-++. -+|+||||+++|||++ .++|++++||||||+||+...+.+.+.+++.. .+
T Consensus 165 g~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ 241 (270)
T cd03242 165 GPHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT 241 (270)
T ss_pred CCChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE
Confidence 35554444433333 3799999999999997 48999999999999999999999999998753 45
Q ss_pred EEEecChhHHHh-c---CEEEEEeCCEE
Q psy13234 1127 IIVAHRLSTIIH-A---DEILVMHAGEI 1150 (1192)
Q Consensus 1127 IvIAHRLSTI~~-a---DrIlVLe~G~I 1150 (1192)
++++|....+.+ | ++|+.+++|+|
T Consensus 242 ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 242 FVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEEeCCchhccchhccCccEEEEeCcEE
Confidence 555555544433 4 78999999986
No 409
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.6e-15 Score=192.42 Aligned_cols=95 Identities=32% Similarity=0.491 Sum_probs=87.6
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHhcCEEEE
Q psy13234 1068 VGERGLKLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILV 1144 (1192)
Q Consensus 1068 VGErG~~LSGGQKQRIALARALLrdP--~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~aDrIlV 1144 (1192)
.+.....|||||+||++|||||..+| +++||||||++||++..+.+.+.|+++.+ |+|+|+|+|+++.+..||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 45566789999999999999999986 89999999999999999999999988754 6899999999999999999999
Q ss_pred E------eCCEEEEEcCHHHHHhc
Q psy13234 1145 M------HAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1145 L------e~G~IvE~GtheELL~~ 1162 (1192)
| ++|+|++.|+++++...
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998754
No 410
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=1.6e-15 Score=200.93 Aligned_cols=118 Identities=23% Similarity=0.298 Sum_probs=104.5
Q ss_pred cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccc
Q psy13234 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQV 1068 (1192)
Q Consensus 989 LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~V 1068 (1192)
.|+||+++||++ +|+++++ .+|+ +.++.++++..+|+| ||.+
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~----------------------------------~~~~~~~~~~~~~~~-~~~~ 1194 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSAS----------------------------------DKRRNYNYRVVMLKG-DTAL 1194 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHH----------------------------------HHcCchHHHhccCCC-Ceec
Confidence 479999999999 8888776 4666 889999999999999 9999
Q ss_pred cCCCCCCChHHHH------HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc------CCceEEEEecChhHH
Q psy13234 1069 GERGLKLSGGEKQ------RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC------ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1069 GErG~~LSGGQKQ------RIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~------~grTvIvIAHRLSTI 1136 (1192)
+.+| +||||||| |+|||||++.+|+||+|||||++||+.+...+.+.|.++. .+.|+|+|||++..+
T Consensus 1195 ~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~ 1273 (1311)
T TIGR00606 1195 DMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFV 1273 (1311)
T ss_pred CCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHH
Confidence 9987 99999999 9999999999999999999999999999999999887763 368999999999988
Q ss_pred Hh------cCEEEEE
Q psy13234 1137 IH------ADEILVM 1145 (1192)
Q Consensus 1137 ~~------aDrIlVL 1145 (1192)
.. +|..+-+
T Consensus 1274 ~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1274 ELLGRSEYVEKFYRL 1288 (1311)
T ss_pred HHHhhccccceeeee
Confidence 64 4555544
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.62 E-value=2.2e-15 Score=191.39 Aligned_cols=94 Identities=31% Similarity=0.468 Sum_probs=87.2
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHhcCEEEEE
Q psy13234 1069 GERGLKLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVM 1145 (1192)
Q Consensus 1069 GErG~~LSGGQKQRIALARALLrdP--~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~aDrIlVL 1145 (1192)
+..-..|||||||||+|||||..+| +++||||||++||++..+.+.+.|+++.+ |.|+|+|+|+++.+..||+|++|
T Consensus 484 ~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~L 563 (943)
T PRK00349 484 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDI 563 (943)
T ss_pred CCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 4555689999999999999999997 99999999999999999999999998754 79999999999999999999999
Q ss_pred ------eCCEEEEEcCHHHHHhc
Q psy13234 1146 ------HAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1146 ------e~G~IvE~GtheELL~~ 1162 (1192)
++|+|+..|+++|+++.
T Consensus 564 gpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 564 GPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred ccccCCCCCEEeeccCHHHHhcC
Confidence 99999999999998764
No 412
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.59 E-value=3.3e-15 Score=171.61 Aligned_cols=190 Identities=20% Similarity=0.264 Sum_probs=124.9
Q ss_pred cceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCeecCC
Q psy13234 902 EDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIF-----------IDNQNIKT 970 (1192)
Q Consensus 902 nVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~-----------IDG~DI~~ 970 (1192)
++.-+|..+.-.|.++. +..+|+. +||+|++|-||||-+|+|.|...|.=|+-. .-|..+++
T Consensus 79 e~vHRYg~NgFkL~~LP----~pr~G~V---~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP----TPRPGKV---VGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCCceEEecCC----CCCCCcE---EEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHH
Confidence 34556765444444442 4455555 999999999999999999999999988531 00111111
Q ss_pred CCh----Hhhc--ccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 971 VSQ----ASLR--QAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 971 i~~----~sLR--~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
+=. ..+| .++-||--=|-.+.||++|=+.--+
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~d------------------------------------------ 189 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVD------------------------------------------ 189 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhh------------------------------------------
Confidence 000 0000 0111222233444455544442110
Q ss_pred HHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C
Q psy13234 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-S 1123 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-g 1123 (1192)
+.-..+|.+..| +++-.+...-..|||||-||+|||-|++||++++++|||||-||-...-..-+.|+++.+ +
T Consensus 190 ----e~g~~devve~l--~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~ 263 (591)
T COG1245 190 ----ERGKFDEVVERL--GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDG 263 (591)
T ss_pred ----hcCcHHHHHHHh--cchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccC
Confidence 111223333332 344444455568999999999999999999999999999999999999999999999988 5
Q ss_pred ceEEEEecChhHHH-hcCEEEEEe
Q psy13234 1124 RTTIIVAHRLSTII-HADEILVMH 1146 (1192)
Q Consensus 1124 rTvIvIAHRLSTI~-~aDrIlVLe 1146 (1192)
++||+|-|+|..+. -+|-|-++-
T Consensus 264 k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 264 KYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred CeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999885 578877764
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.59 E-value=2.7e-15 Score=167.59 Aligned_cols=141 Identities=18% Similarity=0.312 Sum_probs=106.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-hHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHH
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEV 1010 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~-~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV 1010 (1192)
.++|+||+|||||||++.|.|++.|++|+|.+||+++..++ ..+++..++++||+..--..++.+|--
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~----------- 181 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP----------- 181 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch-----------
Confidence 49999999999999999999999999999999999998775 578888899999976432234444310
Q ss_pred HHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q psy13234 1011 KEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLL 1090 (1192)
Q Consensus 1011 ~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALL 1090 (1192)
+..+ -..++|++
T Consensus 182 --------------------------------------k~~~-----------------------------~~~~i~~~- 193 (270)
T TIGR02858 182 --------------------------------------KAEG-----------------------------MMMLIRSM- 193 (270)
T ss_pred --------------------------------------HHHH-----------------------------HHHHHHhC-
Confidence 1111 15566664
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhH--H------------HhcCEEEEEeCCEEEEEcCH
Q psy13234 1091 KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST--I------------IHADEILVMHAGEIVERGRH 1156 (1192)
Q Consensus 1091 rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLST--I------------~~aDrIlVLe~G~IvE~Gth 1156 (1192)
+|+++++|||++ ++.+.+.++...+|.|+|+++|..+. + .-+||+++|++|+ ..|+.
T Consensus 194 -~P~villDE~~~------~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~ 264 (270)
T TIGR02858 194 -SPDVIVVDEIGR------EEDVEALLEALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTV 264 (270)
T ss_pred -CCCEEEEeCCCc------HHHHHHHHHHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCce
Confidence 999999999974 23345555555578999999997665 3 3479999999887 66776
Q ss_pred HHHH
Q psy13234 1157 EELL 1160 (1192)
Q Consensus 1157 eELL 1160 (1192)
+++.
T Consensus 265 ~~i~ 268 (270)
T TIGR02858 265 EAVY 268 (270)
T ss_pred eecc
Confidence 6543
No 414
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=2.4e-15 Score=163.62 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=68.8
Q ss_pred CCCChHHHHHHHHHHHh--cCCCCEEEEeCC---CCCCCHHHHHHHH-HHHHHHcCCceEEEEecChhHHHhcCEEEEEe
Q psy13234 1073 LKLSGGEKQRVAIARTL--LKAPQIVLLDEA---TSALDTKTERNIQ-SALNRVCASRTTIIVAHRLSTIIHADEILVMH 1146 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARAL--LrdP~ILLLDEA---TSALD~eTE~~Iq-~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe 1146 (1192)
.++|.|++|+..+|+++ +.+|+++||||| |+++|........ +.+.+ ..++|+|++||..+....||++..++
T Consensus 88 ~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~ 166 (222)
T cd03285 88 KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVK 166 (222)
T ss_pred cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeE
Confidence 36999999999999999 899999999999 9999998776543 55543 34799999999766667799999999
Q ss_pred CCEEEEEcC
Q psy13234 1147 AGEIVERGR 1155 (1192)
Q Consensus 1147 ~G~IvE~Gt 1155 (1192)
+|++...++
T Consensus 167 ~g~~~~~~~ 175 (222)
T cd03285 167 NLHVTALTD 175 (222)
T ss_pred EEEEEEEEe
Confidence 999987653
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.52 E-value=2.7e-14 Score=152.62 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=69.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHc-CCceEEEEecChhHHHhcCEEEEEeCCEE
Q psy13234 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVC-ASRTTIIVAHRLSTIIHADEILVMHAGEI 1150 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~a-L~~l~-~grTvIvIAHRLSTI~~aDrIlVLe~G~I 1150 (1192)
..+|+++|| +..+-+...+|+++++||||+++|+.....+... ++... .++|+|++||+.+.+..+|++..+++|++
T Consensus 90 s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~ 168 (202)
T cd03243 90 STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHM 168 (202)
T ss_pred eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEE
Confidence 356666665 6666677889999999999999999888777554 44433 36899999999999999999999999999
Q ss_pred EEEcCHHHH
Q psy13234 1151 VERGRHEEL 1159 (1192)
Q Consensus 1151 vE~GtheEL 1159 (1192)
.+.++.+++
T Consensus 169 ~~~~~~~~~ 177 (202)
T cd03243 169 EELITTGGL 177 (202)
T ss_pred EEEecCCee
Confidence 988865443
No 416
>KOG2355|consensus
Probab=99.52 E-value=9.7e-14 Score=146.31 Aligned_cols=217 Identities=22% Similarity=0.276 Sum_probs=157.2
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC-CC
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT-VS 972 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~-i~ 972 (1192)
..|+ ..+..|.|+...|+..++| +.++.|.. ..+||.+|||||||+|+|.|-.-...|.|.+.|.+--. -.
T Consensus 12 ~aie--vsgl~f~y~~~dP~~~Dfn---ldlp~gsR---cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 12 FAIE--VSGLQFKYKVSDPIFFDFN---LDLPAGSR---CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTS 83 (291)
T ss_pred ceEE--EeccEEecccCCceEEEEe---eccCCCce---EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccc
Confidence 4566 8899999998779999998 99999999 99999999999999999999999889999999986422 11
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccc-----cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYAR-----INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~-----~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A 1047 (1192)
.++= ...+|+- |.-..|....+ -|.+-|+++.-. +.++ ....|++.+.
T Consensus 84 l~~S-gdl~YLG-------geW~~~~~~agevplq~D~sae~mifgV--------------~g~d-----p~Rre~LI~i 136 (291)
T KOG2355|consen 84 LESS-GDLSYLG-------GEWSKTVGIAGEVPLQGDISAEHMIFGV--------------GGDD-----PERREKLIDI 136 (291)
T ss_pred cccc-CceeEec-------ccccccccccccccccccccHHHHHhhc--------------cCCC-----hhHhhhhhhh
Confidence 1111 1133332 22222222111 134444444433 1110 0111222222
Q ss_pred HHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--Cce
Q psy13234 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRT 1125 (1192)
Q Consensus 1048 L~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grT 1125 (1192)
+|-.+.=|=.++|-|||.|+-|+--||+.=++|+|||-|--||.-....+.+-+++.++ ++|
T Consensus 137 ----------------LDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rgat 200 (291)
T KOG2355|consen 137 ----------------LDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGAT 200 (291)
T ss_pred ----------------eeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcE
Confidence 34445556678999999999999999999999999999999999999999999987764 689
Q ss_pred EEEEecChhHHHh-cCEEEEEeCCEEEE---EcCHHHHHh
Q psy13234 1126 TIIVAHRLSTIIH-ADEILVMHAGEIVE---RGRHEELLE 1161 (1192)
Q Consensus 1126 vIvIAHRLSTI~~-aDrIlVLe~G~IvE---~GtheELL~ 1161 (1192)
++..||=..-+.. ..+++.+++|+++. .+.-.|+-+
T Consensus 201 IVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~~~ 240 (291)
T KOG2355|consen 201 IVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEFST 240 (291)
T ss_pred EEEEeeeccchhhcchhEEEecCCeeeeccccchhhhhhc
Confidence 9999999887764 88999999999998 444444433
No 417
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.50 E-value=1.4e-14 Score=140.58 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=69.5
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcccc
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 991 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFn 991 (1192)
+++++++ +.+.+|+. ++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|+
T Consensus 3 ~aL~~vs---l~i~~ge~---v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~ 68 (107)
T cd00820 3 TSLHGVL---VDVYGKVG---VLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE 68 (107)
T ss_pred eEEEeeE---EEEcCCEE---EEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch
Confidence 4677777 88888777 9999999999999999986 89999999999999999999999999999 999
Q ss_pred ccHHHHHhc
Q psy13234 992 NSIKFNIQY 1000 (1192)
Q Consensus 992 GTIreNI~~ 1000 (1192)
+||||||++
T Consensus 69 ~ti~~Ni~~ 77 (107)
T cd00820 69 IRLRLNIFL 77 (107)
T ss_pred hhHHhhcee
Confidence 999999987
No 418
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.45 E-value=9.2e-14 Score=169.29 Aligned_cols=106 Identities=20% Similarity=0.374 Sum_probs=91.6
Q ss_pred HHHHHHHHcChHHHHhcCCCCCcccccCCC------CCCChHHHHHHHHHHHhc----------CCCCEEEEeCCC-CCC
Q psy13234 1043 EVKEAATSADIHERILSFPDGYDTQVGERG------LKLSGGEKQRVAIARTLL----------KAPQIVLLDEAT-SAL 1105 (1192)
Q Consensus 1043 eI~~AL~~A~Lhd~I~~LP~GyDT~VGErG------~~LSGGQKQRIALARALL----------rdP~ILLLDEAT-SAL 1105 (1192)
.+...|+..+. ++...+|+++++.+++.| ..||||||||++||||+. .+|+++|||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34445555543 455578999999999999 689999999999999887 599999999998 789
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeC-CEE
Q psy13234 1106 DTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA-GEI 1150 (1192)
Q Consensus 1106 D~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~-G~I 1150 (1192)
|+++...+.+.|.+. +++|+|+|||+++....||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999988 78999999999999999999999986 543
No 419
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.43 E-value=2.3e-13 Score=145.76 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=87.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccc-cccHHHHHhccccCCCHHH
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKFNIQYARINASEEE 1009 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LF-nGTIreNI~~G~~~asdEe 1009 (1192)
+.++|+|||||||||++|.|.+..- +..+|.++..- +++.|+..+| .-|++||+..+.. ...+|
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d~l~~~~s-~~~~e 90 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSDDLRDGIS-YFYAE 90 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchhccccccC-hHHHH
Confidence 4499999999999999999976332 12366665331 2455544444 4689999976531 11122
Q ss_pred HHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q psy13234 1010 VKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTL 1089 (1192)
Q Consensus 1010 V~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARAL 1089 (1192)
+ +++.++++.+++
T Consensus 91 ~-------------------------------~~~~~iL~~~~~------------------------------------ 103 (199)
T cd03283 91 L-------------------------------RRLKEIVEKAKK------------------------------------ 103 (199)
T ss_pred H-------------------------------HHHHHHHHhccC------------------------------------
Confidence 1 122333333321
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCceEEEEecChhHHHhc---CEEEEE
Q psy13234 1090 LKAPQIVLLDEATSALDTKTERNIQS-ALNRVC-ASRTTIIVAHRLSTIIHA---DEILVM 1145 (1192)
Q Consensus 1090 LrdP~ILLLDEATSALD~eTE~~Iq~-aL~~l~-~grTvIvIAHRLSTI~~a---DrIlVL 1145 (1192)
++|+++|+||||+++|+.+...+.. .++++. ++.|+|++||+++.+... ++|-.+
T Consensus 104 -~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 104 -GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred -CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 7999999999999999998877654 455443 468999999999877654 444443
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.38 E-value=1e-12 Score=141.47 Aligned_cols=72 Identities=31% Similarity=0.446 Sum_probs=60.0
Q ss_pred CCChHHHHHHHHH----HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEE
Q psy13234 1074 KLSGGEKQRVAIA----RTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 1145 (1192)
Q Consensus 1074 ~LSGGQKQRIALA----RALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVL 1145 (1192)
.||||||-+++|| ..-++++|++||||+.++||....+.+.+.|++..+++-+|++||+......||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999997 33457899999999999999999999999999998889999999999999999998876
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.37 E-value=8.1e-12 Score=145.31 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=66.4
Q ss_pred CCCChHHHHHHHHHHHh---------cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh---cC
Q psy13234 1073 LKLSGGEKQRVAIARTL---------LKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH---AD 1140 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARAL---------LrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~---aD 1140 (1192)
..+|+||+|+++||+++ .++|+|++||||+|.||++..+.+.+.+.+. ++++++.+|.+..+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 57899999999999988 4899999999999999999999999988753 4688999998876544 56
Q ss_pred EEEEEeCCEE
Q psy13234 1141 EILVMHAGEI 1150 (1192)
Q Consensus 1141 rIlVLe~G~I 1150 (1192)
+++.+++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 422
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.29 E-value=4.8e-12 Score=137.36 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=56.9
Q ss_pred HHHHHh--cCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHH
Q psy13234 1084 AIARTL--LKAPQIVLLDEA---TSALDTKTE-RNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHE 1157 (1192)
Q Consensus 1084 ALARAL--LrdP~ILLLDEA---TSALD~eTE-~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~Gthe 1157 (1192)
.+++++ ..+|++++|||| |+++|...- ..+.+.+.+. .++|+|++||..+....+|++.-+++|++...++.+
T Consensus 99 ~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~ 177 (216)
T cd03284 99 ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGG 177 (216)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCC
Confidence 355554 469999999999 999998652 4445555432 478999999998877888988888999988777666
Q ss_pred HH
Q psy13234 1158 EL 1159 (1192)
Q Consensus 1158 EL 1159 (1192)
++
T Consensus 178 ~l 179 (216)
T cd03284 178 GV 179 (216)
T ss_pred eE
Confidence 55
No 423
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.25 E-value=1.8e-11 Score=150.11 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=72.1
Q ss_pred CCCChHHHHHHHHHHHhcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCC
Q psy13234 1073 LKLSGGEKQRVAIARTLLKA----PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLrd----P~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G 1148 (1192)
..|||||+||++||||++.. |+++||||||++||+.+...+.+.|+++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 36799999999999999875 69999999999999999999999999998899999999999999999999999986
Q ss_pred E
Q psy13234 1149 E 1149 (1192)
Q Consensus 1149 ~ 1149 (1192)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 4
No 424
>KOG0063|consensus
Probab=99.25 E-value=2.8e-11 Score=138.73 Aligned_cols=208 Identities=22% Similarity=0.345 Sum_probs=140.9
Q ss_pred eeeecCCCCccccccccceeecCCcccce--EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEE
Q psy13234 904 QFGFRKGKGTRDAIGCLRMIALESQLVWY--LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIG 981 (1192)
Q Consensus 904 sFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~--VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig 981 (1192)
.++|+..+....+.. +.+..|+.+.. +...|++|-||||+++.|+|..+|++| .++-.++ ++
T Consensus 342 ~y~Yp~m~k~~g~F~---L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~------~e~p~ln-------VS 405 (592)
T KOG0063|consen 342 RYSYPKMKKTVGDFC---LCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG------GEIPVLN-------VS 405 (592)
T ss_pred eeccCcceeeeeeEE---EEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc------Ccccccc-------ee
Confidence 356766554555554 78888887644 666899999999999999999999876 2333333 77
Q ss_pred EEcCCCc-cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcC
Q psy13234 982 VVPQDTV-LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSF 1060 (1192)
Q Consensus 982 ~VPQDp~-LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~L 1060 (1192)
|=||... =|.+|+|+=+. +.+..|. .|+.+ +.++.+--.+
T Consensus 406 ykpqkispK~~~tvR~ll~--------~kIr~ay----~~pqF--------------------~~dvmkpL~i------- 446 (592)
T KOG0063|consen 406 YKPQKISPKREGTVRQLLH--------TKIRDAY----MHPQF--------------------VNDVMKPLQI------- 446 (592)
T ss_pred ccccccCccccchHHHHHH--------HHhHhhh----cCHHH--------------------HHhhhhhhhH-------
Confidence 7788543 57789887652 2333222 22221 1122222222
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCceEEEEecChhHHH-
Q psy13234 1061 PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASRTTIIVAHRLSTII- 1137 (1192)
Q Consensus 1061 P~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l--~~grTvIvIAHRLSTI~- 1137 (1192)
+-.++..-.+|||||.||+|||-++=|.+++++.|||.+-||++.....-..+++. ..++|--+|-|.+-...
T Consensus 447 ----e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 447 ----ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred ----HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHh
Confidence 22334445689999999999999999999999999999999998776666666654 35699999999986553
Q ss_pred hcCEEEEEeCC--EEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1138 HADEILVMHAG--EIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1138 ~aDrIlVLe~G--~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
.|||++|.+.- ...-.-.++.|++....|-++.
T Consensus 523 ladrvivf~G~ps~~~~a~~p~~Ll~gmN~fl~~l 557 (592)
T KOG0063|consen 523 LADRVIVFEGQPSVNTVANSPQSLLAGMNRFLKNL 557 (592)
T ss_pred hcceeEEEecCcccccccCChhHHHHHhHHHHhhc
Confidence 69999998742 2222335666666555554443
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.24 E-value=1.1e-11 Score=133.14 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHc
Q psy13234 1078 GEKQRVAIARTLLKAPQIVLLDEAT-----SALDTKTERNIQSALNRVC 1121 (1192)
Q Consensus 1078 GQKQRIALARALLrdP~ILLLDEAT-----SALD~eTE~~Iq~aL~~l~ 1121 (1192)
-|+|++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998864
No 426
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=2.1e-11 Score=131.36 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=53.9
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHc-CCceEEEEecChhHHHhcC
Q psy13234 1068 VGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVC-ASRTTIIVAHRLSTIIHAD 1140 (1192)
Q Consensus 1068 VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~a-L~~l~-~grTvIvIAHRLSTI~~aD 1140 (1192)
+.++-+.+|+|+||+. .+-++..+|++++||||++++|+.....+..+ ++.+. .++|+|++||..+.+..++
T Consensus 85 ~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 85 MERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred cchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 3455568999999764 44557789999999999999999775555433 44433 3789999999999876544
No 427
>KOG0066|consensus
Probab=99.24 E-value=1.4e-11 Score=140.63 Aligned_cols=206 Identities=23% Similarity=0.284 Sum_probs=127.7
Q ss_pred CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhc-CC-CCCCceEEECCeecCCCChHhhcccEEEEcCCCc
Q psy13234 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFR-FY-DVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV 988 (1192)
Q Consensus 911 ~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlR-ly-dp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~ 988 (1192)
+....+-+ +.+..|.. .++|||+|-|||||++-|.- -+ -|..=. +-++.|+.+
T Consensus 277 k~LFvnA~---L~Iv~GRR---YGLVGPNG~GKTTLLkHIa~RalaIPpnID-------------------vLlCEQEvv 331 (807)
T KOG0066|consen 277 KLLFVNAS---LTIVYGRR---YGLVGPNGMGKTTLLKHIAARALAIPPNID-------------------VLLCEQEVV 331 (807)
T ss_pred ceeeeccc---eEEEecce---ecccCCCCCchHHHHHHHHhhhccCCCCCc-------------------eEeeeeeee
Confidence 33445556 88888998 99999999999999988763 22 121111 345666665
Q ss_pred cccccHHHHHhccccCCCHHH-HHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH------HHhcCC
Q psy13234 989 LFNNSIKFNIQYARINASEEE-VKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE------RILSFP 1061 (1192)
Q Consensus 989 LFnGTIreNI~~G~~~asdEe-V~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd------~I~~LP 1061 (1192)
-=+.|--+-+.-+ |...-+ +.+++++ .. .+..|-++.-. .-+++.+-|++.|... .|.. -
T Consensus 332 ad~t~Ai~tvl~a--D~kRl~lLeee~~L---~~---q~e~Gd~taaE----rl~~v~~ELraiGA~sAEarARRILA-G 398 (807)
T KOG0066|consen 332 ADSTSAIDTVLKA--DKKRLALLEEEAKL---MS---QIEEGDTTAAE----RLKEVADELRAIGADSAEARARRILA-G 398 (807)
T ss_pred ecCcHHHHHHHHh--hHHHHHHHHHHHHH---HH---HHHcCchHHHH----HHHHHHHHHHHhccccchhHHHHHHh-h
Confidence 5444443433211 111111 1111100 00 01111111111 1122222333333221 1221 2
Q ss_pred CCCcccccCCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh-c
Q psy13234 1062 DGYDTQVGERG-LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-A 1139 (1192)
Q Consensus 1062 ~GyDT~VGErG-~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~-a 1139 (1192)
-|++-.+-++. ..+|||=|-||+|||||+-.|-+|+|||||.+||-..---+-..|..+ .+|.++|+|+-+.+.+ |
T Consensus 399 LGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VC 476 (807)
T KOG0066|consen 399 LGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVC 476 (807)
T ss_pred cCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHH
Confidence 37777777775 479999999999999999999999999999999987666666667665 4899999999999864 8
Q ss_pred CEEEEEeCCEEE-EEcCH
Q psy13234 1140 DEILVMHAGEIV-ERGRH 1156 (1192)
Q Consensus 1140 DrIlVLe~G~Iv-E~Gth 1156 (1192)
..|+.|++-+.- .+|++
T Consensus 477 tdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 477 TDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred HHHhhhhhhhhhhhcchH
Confidence 899999988764 34655
No 428
>PRK10869 recombination and repair protein; Provisional
Probab=99.19 E-value=4.4e-11 Score=146.10 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=71.5
Q ss_pred CCChHHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCE
Q psy13234 1074 KLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 1149 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALLr----dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~ 1149 (1192)
.+||||+||++|||+++. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||++.....||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 479999999999999996 6899999999999999999999999999988899999999999999999999998754
No 429
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.14 E-value=5.1e-11 Score=126.06 Aligned_cols=72 Identities=21% Similarity=0.166 Sum_probs=53.3
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHc--CCceEEEEecChhHHHhcCE
Q psy13234 1069 GERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ-SALNRVC--ASRTTIIVAHRLSTIIHADE 1141 (1192)
Q Consensus 1069 GErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq-~aL~~l~--~grTvIvIAHRLSTI~~aDr 1141 (1192)
.++-..+|+|.+|...+++. ..+|+++++|||++++|+.....+. ..++.+. .++|+|++||..+....+|+
T Consensus 56 ~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 56 AQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred hccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 34455788888874444432 2499999999999999999777764 4455544 36899999999987777774
No 430
>PRK13695 putative NTPase; Provisional
Probab=99.10 E-value=6e-11 Score=123.86 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=64.7
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeC
Q psy13234 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA--TSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 1147 (1192)
Q Consensus 1070 ErG~~LSGGQKQRIALARALLrdP~ILLLDEA--TSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~ 1147 (1192)
.....+||+|+-+..+++..+++|+++++||+ +.++|.+..+.+.+++ ..++++|+++|+-+.-..+|+|..+.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCC
Confidence 33446999999999999999999999999995 4455544444444444 247999999999666678999999999
Q ss_pred CEEEEE
Q psy13234 1148 GEIVER 1153 (1192)
Q Consensus 1148 G~IvE~ 1153 (1192)
|+|.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999886
No 431
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=6.3e-10 Score=120.68 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHcC----CceEEEEecChhHHHhcC
Q psy13234 1078 GEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCA----SRTTIIVAHRLSTIIHAD 1140 (1192)
Q Consensus 1078 GQKQRIALARALLrdP~ILLLDEATSALD~eTE~~I-q~aL~~l~~----grTvIvIAHRLSTI~~aD 1140 (1192)
-|-||+++|+++..+|++++||||++++|+.....+ .+.++++.+ +.++|++||.++.+....
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 456999999999999999999999999998764444 556666543 248999999999887653
No 432
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.03 E-value=3.1e-09 Score=126.38 Aligned_cols=167 Identities=19% Similarity=0.256 Sum_probs=111.3
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC---eecCC-----CChHhhcccEEEEcC--CCcccc
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN---QNIKT-----VSQASLRQAIGVVPQ--DTVLFN 991 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG---~DI~~-----i~~~sLR~~Ig~VPQ--Dp~LFn 991 (1192)
+.+.+|+. ++|+|+||+|||||++.|.|+++|+.|.|.+.| .++.+ ++.+.+++.|.+|++ +|.+
T Consensus 153 ~~i~~Gq~---i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~-- 227 (438)
T PRK07721 153 LTVGKGQR---VGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPAL-- 227 (438)
T ss_pred eeecCCcE---EEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHH--
Confidence 45555555 999999999999999999999999999999954 44453 455668889999965 2221
Q ss_pred ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCC
Q psy13234 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGER 1071 (1192)
Q Consensus 992 GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGEr 1071 (1192)
.|....| -+.-+.|.... +|+|-.+=-.
T Consensus 228 --~r~~~~~------------------------------------------------~a~~iAEyfr~--~g~~Vll~~D 255 (438)
T PRK07721 228 --MRIKGAY------------------------------------------------TATAIAEYFRD--QGLNVMLMMD 255 (438)
T ss_pred --HHHHHHH------------------------------------------------HHHHHHHHHHH--CCCcEEEEEe
Confidence 1111111 11122233322 3555443211
Q ss_pred CCCCC-hHHHHH-HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc---CCc-----eEEEEecChhHHHhcCE
Q psy13234 1072 GLKLS-GGEKQR-VAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC---ASR-----TTIIVAHRLSTIIHADE 1141 (1192)
Q Consensus 1072 G~~LS-GGQKQR-IALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~---~gr-----TvIvIAHRLSTI~~aDr 1141 (1192)
+++ =-|.|| |++| +.+|| .|+++|+..-..+.+.+++.. +|. |+++.+|+++. .-||+
T Consensus 256 --sltr~A~A~rEisl~---~ge~P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~ 323 (438)
T PRK07721 256 --SVTRVAMAQREIGLA---VGEPP------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADT 323 (438)
T ss_pred --ChHHHHHHHHHHHHh---cCCCC------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhh
Confidence 111 011111 2221 23433 689999999999999998876 465 99999999995 88999
Q ss_pred EEEEeCCEEEEEcCHH
Q psy13234 1142 ILVMHAGEIVERGRHE 1157 (1192)
Q Consensus 1142 IlVLe~G~IvE~Gthe 1157 (1192)
+.++.||+|+..|+-.
T Consensus 324 v~~i~dG~Ivls~~la 339 (438)
T PRK07721 324 VRGILDGHFVLDRQLA 339 (438)
T ss_pred EEEecCEEEEEeccHH
Confidence 9999999999988743
No 433
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=2.7e-09 Score=124.59 Aligned_cols=63 Identities=25% Similarity=0.316 Sum_probs=56.9
Q ss_pred CCCChHHHHHHHHHHHhcC---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHH
Q psy13234 1073 LKLSGGEKQRVAIARTLLK---------APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLr---------dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~ 1137 (1192)
..+|.||+++++||.++.. +|+|++||||+|.||....+.+.+.|.+. +.++++.+|++..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999998 99999999999999999999999999754 679999999987654
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.00 E-value=8e-10 Score=126.11 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=99.4
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhcc
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYA 1001 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G 1001 (1192)
+.+.+|+. ++|+|++||||||++++|++++++..|.+.|+ |..++.... +..+.++.|...
T Consensus 139 ~~v~~~~~---ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~------------- 199 (308)
T TIGR02788 139 LAIASRKN---IIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG------------- 199 (308)
T ss_pred HHhhCCCE---EEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-------------
Confidence 44556666 99999999999999999999999999988885 444444322 222322221100
Q ss_pred ccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHH
Q psy13234 1002 RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQ 1081 (1192)
Q Consensus 1002 ~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQ 1081 (1192)
+ | +++-..
T Consensus 200 --------------------------------------------------------------------~-~---~~~~~~ 207 (308)
T TIGR02788 200 --------------------------------------------------------------------Q-G---LAKVTP 207 (308)
T ss_pred --------------------------------------------------------------------C-C---cCccCH
Confidence 0 0 000011
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC-ceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1082 RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1082 RIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g-rTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
.=++++++-.+|+++++||+.+ . .+.+.++....| .+++...|-.+.....||+..|..|++...|..+|.+
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~---~----e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG---D----EAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC---H----HHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 2245667778999999999997 2 234455555455 4569999999988889999999999999999888877
Q ss_pred h
Q psy13234 1161 E 1161 (1192)
Q Consensus 1161 ~ 1161 (1192)
.
T Consensus 281 ~ 281 (308)
T TIGR02788 281 V 281 (308)
T ss_pred H
Confidence 3
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.98 E-value=3.8e-09 Score=129.36 Aligned_cols=112 Identities=32% Similarity=0.462 Sum_probs=91.4
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChh
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKA--PQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 1134 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrd--P~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLS 1134 (1192)
...--||=|. ...-..|||||.|||.||+.+-.. -=++|||||+.+|-+.--.++.++|+++.. |.|+|+|-|+.+
T Consensus 466 ~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 466 VDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 3334455554 344568999999999999999765 458899999999988888888888877753 699999999999
Q ss_pred HHHhcCEEEEE------eCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1135 TIIHADEILVM------HAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1135 TI~~aDrIlVL------e~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
||+.||.|+=+ +.|+|+..|+++|+++.+..--.-|
T Consensus 545 ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~Y 586 (935)
T COG0178 545 TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQY 586 (935)
T ss_pred HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHh
Confidence 99999999987 5789999999999998874433333
No 436
>PRK01156 chromosome segregation protein; Provisional
Probab=98.96 E-value=1.4e-09 Score=140.11 Aligned_cols=76 Identities=26% Similarity=0.348 Sum_probs=67.3
Q ss_pred CCCCCChHHHHHHHH------HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---C-ceEEEEecChhHHHhcC
Q psy13234 1071 RGLKLSGGEKQRVAI------ARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA---S-RTTIIVAHRLSTIIHAD 1140 (1192)
Q Consensus 1071 rG~~LSGGQKQRIAL------ARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~---g-rTvIvIAHRLSTI~~aD 1140 (1192)
....||||||||+|| ||++..+|++++|||||++||+.+...+.+.+....+ + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 5999999999999999999999999999888864322 2 58999999999999999
Q ss_pred EEEEEe
Q psy13234 1141 EILVMH 1146 (1192)
Q Consensus 1141 rIlVLe 1146 (1192)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 437
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.94 E-value=1.3e-09 Score=142.63 Aligned_cols=75 Identities=27% Similarity=0.365 Sum_probs=68.8
Q ss_pred CCCCCChHHHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEE
Q psy13234 1071 RGLKLSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 1145 (1192)
Q Consensus 1071 rG~~LSGGQKQRIALARAL----LrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVL 1145 (1192)
....||||||||++|||++ +++|+++||||||++||+.+...+.+.|.+..++.|+|+|||+++.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 3457999999999999998 57889999999999999999999999999887789999999999999999999754
No 438
>PRK14079 recF recombination protein F; Provisional
Probab=98.94 E-value=1.1e-08 Score=118.87 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEE
Q psy13234 1073 LKLSGGEKQRVAIARTLL---------KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEIL 1143 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALL---------rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIl 1143 (1192)
.-+|+||++++++|+.+. .+|+|++||||+|.||.+....+.+.|.+.. .+.|.-|+ .-.-+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEE
Confidence 357999999999999998 8999999999999999999999988886542 34444333 344689999
Q ss_pred EEeCCEEEE
Q psy13234 1144 VMHAGEIVE 1152 (1192)
Q Consensus 1144 VLe~G~IvE 1152 (1192)
.+++|++.-
T Consensus 337 ~~~~~~~~~ 345 (349)
T PRK14079 337 RIEAGVFTP 345 (349)
T ss_pred EEeccEecC
Confidence 999998754
No 439
>PRK03918 chromosome segregation protein; Provisional
Probab=98.92 E-value=2.1e-09 Score=137.99 Aligned_cols=74 Identities=30% Similarity=0.377 Sum_probs=67.0
Q ss_pred CCCChHHHH------HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHhcCEEEEE
Q psy13234 1073 LKLSGGEKQ------RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVM 1145 (1192)
Q Consensus 1073 ~~LSGGQKQ------RIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~aDrIlVL 1145 (1192)
..||||||| |+||||++.++|+++||||||++||+.+...+.+.|....+ +.|+|+|||+......||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 479999999 56677789999999999999999999999999999987654 57999999999988999999999
Q ss_pred e
Q psy13234 1146 H 1146 (1192)
Q Consensus 1146 e 1146 (1192)
+
T Consensus 867 ~ 867 (880)
T PRK03918 867 S 867 (880)
T ss_pred E
Confidence 8
No 440
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.90 E-value=6.3e-09 Score=132.77 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=59.0
Q ss_pred hcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHc-CCceEEEEecChhHHH----------hcCEEEEEeCCEEEEEcCH
Q psy13234 1089 LLKAPQIVLLDEATSAL-DTKTERNIQSALNRVC-ASRTTIIVAHRLSTII----------HADEILVMHAGEIVERGRH 1156 (1192)
Q Consensus 1089 LLrdP~ILLLDEATSAL-D~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~----------~aDrIlVLe~G~IvE~Gth 1156 (1192)
+.++|+++++|||+++| |+.+.+.+.+.+++.. .+.++|++||+++.+. .||..++|.+|++.+.|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 46899999999999999 6899999999998764 4689999999998874 7999999999998877643
No 441
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.89 E-value=2.5e-09 Score=135.16 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCceEEEEecChhHH
Q psy13234 1072 GLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS-ALNRVC-ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1072 G~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~-aL~~l~-~grTvIvIAHRLSTI 1136 (1192)
-..+|+|++|+..|++++ .+|+++|||||++++|+..-..+.. .++.+. .++++|++||..+.-
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 456999999999999987 7899999999999999999998854 444443 478999999997753
No 442
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.85 E-value=4.3e-09 Score=112.75 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=45.4
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEe
Q psy13234 1084 AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH 1146 (1192)
Q Consensus 1084 ALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe 1146 (1192)
++++|+..+|+++++||+. |.++ +..+++....|.+++.++|..+.....||++.|-
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~~a~~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLET---IRLALTAAETGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHH---HHHHHHHHHcCCEEEEEecCCcHHHHHhHHHhhc
Confidence 5889999999999999996 5554 3444444557899999999999888888887663
No 443
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.84 E-value=5.1e-09 Score=137.62 Aligned_cols=85 Identities=22% Similarity=0.293 Sum_probs=74.6
Q ss_pred CCCcccccCCC------CCCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Q psy13234 1062 DGYDTQVGERG------LKLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 1131 (1192)
Q Consensus 1062 ~GyDT~VGErG------~~LSGGQKQRIALARALL----rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAH 1131 (1192)
.|++..|...| ..|||||||+++||+++. ++||+++||||+++||+.....+.+.|.+..++.++|+|||
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~ 1135 (1164)
T TIGR02169 1056 GGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSL 1135 (1164)
T ss_pred CCeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 35555554333 479999999999999996 58899999999999999999999999999888889999999
Q ss_pred ChhHHHhcCEEEEEe
Q psy13234 1132 RLSTIIHADEILVMH 1146 (1192)
Q Consensus 1132 RLSTI~~aDrIlVLe 1146 (1192)
+..++..||+++.+.
T Consensus 1136 ~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169 1136 RSPMIEYADRAIGVT 1150 (1164)
T ss_pred cHHHHHhcceeEeEE
Confidence 999999999998775
No 444
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.84 E-value=2.8e-08 Score=103.82 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=60.2
Q ss_pred ccccCCCCCCChHHHH-----HHHHHHH-hcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHc-CCceEEEEecChhH
Q psy13234 1066 TQVGERGLKLSGGEKQ-----RVAIART-LLKAPQIVLLDEATSALD---TKTERNIQSALNRVC-ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1066 T~VGErG~~LSGGQKQ-----RIALARA-LLrdP~ILLLDEATSALD---~eTE~~Iq~aL~~l~-~grTvIvIAHRLST 1135 (1192)
..+......+|+||+| +..+.++ .-.+|+++++||||+.+| ......+.+.++.+. .+.|+|+++|....
T Consensus 63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 63 AIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred EEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 3344555678999999 3444444 456899999999999999 777777777666543 46899999998764
Q ss_pred ---------H-HhcCEEEEEe
Q psy13234 1136 ---------I-IHADEILVMH 1146 (1192)
Q Consensus 1136 ---------I-~~aDrIlVLe 1146 (1192)
+ .-||.|+.|+
T Consensus 143 ~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 143 EGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CCcccCcCceeEeeeEEEEEE
Confidence 3 3589999997
No 445
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=8.5e-09 Score=134.98 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHHHHHhcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHH-hcC
Q psy13234 1073 LKLSGGEKQRVAIARTLLK----------APQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTII-HAD 1140 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLr----------dP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~-~aD 1140 (1192)
..|||||++|++||+||.. +|++|+|||||++||+++...+.+.|.++. .|+||++|||.+.... .+|
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPH 1028 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCC
Confidence 4799999999999999985 799999999999999999999999998874 4689999999998775 589
Q ss_pred EEEEEeCC
Q psy13234 1141 EILVMHAG 1148 (1192)
Q Consensus 1141 rIlVLe~G 1148 (1192)
+|.|++.|
T Consensus 1029 ~i~v~~~~ 1036 (1042)
T TIGR00618 1029 RILVKKTN 1036 (1042)
T ss_pred EEEEEECC
Confidence 99999765
No 446
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.79 E-value=2.7e-08 Score=109.28 Aligned_cols=71 Identities=13% Similarity=0.301 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHhc----CCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHcC-CceEEEEecChhHHH--------
Q psy13234 1075 LSGGEKQRVAIARTLL----KAPQIVLLDEATSAL----DTKTERNIQSALNRVCA-SRTTIIVAHRLSTII-------- 1137 (1192)
Q Consensus 1075 LSGGQKQRIALARALL----rdP~ILLLDEATSAL----D~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~-------- 1137 (1192)
+|+++.++-.++|.+- .+|+++++||||+.+ |+...+.+.+.++++.+ ++|+ ++||..+...
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~ 174 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILR 174 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEE
Confidence 5666666555555443 369999999999999 77767778888877644 5655 5566654322
Q ss_pred -hcCEEEEEe
Q psy13234 1138 -HADEILVMH 1146 (1192)
Q Consensus 1138 -~aDrIlVLe 1146 (1192)
-||-|+.|+
T Consensus 175 ~~~DgvI~L~ 184 (230)
T PRK08533 175 TAATMLIRLE 184 (230)
T ss_pred EeeeEEEEEE
Confidence 247777776
No 447
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.78 E-value=9.4e-09 Score=130.22 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=61.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHc-CCceEEEEecChhHHHhcCEEEEEeC
Q psy13234 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVC-ASRTTIIVAHRLSTIIHADEILVMHA 1147 (1192)
Q Consensus 1070 ErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~a-L~~l~-~grTvIvIAHRLSTI~~aDrIlVLe~ 1147 (1192)
.+-..+|+|++|+..|+|++ .+|+++|||||++++|+.....+..+ +..+. .++|+|++||..+....++....+.+
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~ 464 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVEN 464 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEE
Confidence 34457999999999999999 89999999999999999988888654 44432 46899999999887655433223334
Q ss_pred CEEE
Q psy13234 1148 GEIV 1151 (1192)
Q Consensus 1148 G~Iv 1151 (1192)
+.+.
T Consensus 465 ~~~~ 468 (782)
T PRK00409 465 ASVE 468 (782)
T ss_pred EEEE
Confidence 5543
No 448
>KOG0063|consensus
Probab=98.76 E-value=1.9e-08 Score=116.00 Aligned_cols=73 Identities=33% Similarity=0.435 Sum_probs=63.1
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHH-hcCEEEEE
Q psy13234 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTII-HADEILVM 1145 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~-~aDrIlVL 1145 (1192)
..|||||-||.|||-+...++++.++|||.|-||-+....-..+|+.+.. ++-+|+|-|+||.+. ..|-|-++
T Consensus 212 ~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcL 286 (592)
T KOG0063|consen 212 EQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCL 286 (592)
T ss_pred hhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEE
Confidence 37999999999999999999999999999999999988888888887754 599999999999764 34555444
No 449
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.75 E-value=1.6e-08 Score=107.92 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=58.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCC------------CCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYD------------VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFN 997 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlyd------------p~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreN 997 (1192)
|+.++|+||||||||||+++|.+.++ |..|+ +||.|+..++.+++++.+ .|+.+++.+|+.+|
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 79 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVFGN 79 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEECCc
Confidence 45599999999999999999999986 88898 699999999999998864 58889999999998
Q ss_pred Hhccc
Q psy13234 998 IQYAR 1002 (1192)
Q Consensus 998 I~~G~ 1002 (1192)
.||.
T Consensus 80 -~y~~ 83 (205)
T PRK00300 80 -YYGT 83 (205)
T ss_pred -cccC
Confidence 4653
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.72 E-value=8.2e-08 Score=96.40 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHc-CCceEEEEecChhHH
Q psy13234 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDT----------KTERNIQSALNRVC-ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1075 LSGGQKQRIALARALLrdP~ILLLDEATSALD~----------eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI 1136 (1192)
-+.++.++++.+++.-.+|+++|+||+++-+|. ...+.+.+...... .+.|+|+++|..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345566688999999999999999999965544 44455555554443 379999999988654
No 451
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.70 E-value=4.8e-08 Score=102.70 Aligned_cols=63 Identities=29% Similarity=0.417 Sum_probs=53.2
Q ss_pred CCChHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHH
Q psy13234 1074 KLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALLrdP---~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI 1136 (1192)
.+|.|+||.++|+-+++..+ .++++|||-++|+++..+.+.+.|.+..+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 46999999999998888776 89999999999999999999999988776 78899999998765
No 452
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.70 E-value=4.4e-08 Score=107.14 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=37.0
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhc-CCCCCCceEE
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFR-FYDVESGDIF 962 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlR-lydp~sGsI~ 962 (1192)
.+.++++ +.+.+|+. ++|+||+|+||||+++.+.+ .+.++.|...
T Consensus 19 ~v~n~i~---~~~~~g~~---~~itG~N~~GKStll~~i~~~~~la~~G~~v 64 (222)
T cd03287 19 FVPNDIH---LSAEGGYC---QIITGPNMGGKSSYIRQVALITIMAQIGSFV 64 (222)
T ss_pred EEEEeEE---EEecCCcE---EEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 3455666 77777777 99999999999999999999 7788888764
No 453
>PRK02224 chromosome segregation protein; Provisional
Probab=98.66 E-value=4.7e-08 Score=125.96 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=67.0
Q ss_pred CCCChHHHH------HHHHHHHhcCC------CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-ceEEEEecChhHHHh
Q psy13234 1073 LKLSGGEKQ------RVAIARTLLKA------PQIVLLDEATSALDTKTERNIQSALNRVCA-S-RTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1073 ~~LSGGQKQ------RIALARALLrd------P~ILLLDEATSALD~eTE~~Iq~aL~~l~~-g-rTvIvIAHRLSTI~~ 1138 (1192)
..||||||| |+|+||++..+ ++++||||||++||+.....+.+.|..+.. + .++|+|||+.+.+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 267999999999999999999998887754 3 489999999999999
Q ss_pred cCEEEEEeCC
Q psy13234 1139 ADEILVMHAG 1148 (1192)
Q Consensus 1139 aDrIlVLe~G 1148 (1192)
||++++++..
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999743
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.65 E-value=9e-07 Score=85.03 Aligned_cols=63 Identities=27% Similarity=0.296 Sum_probs=49.6
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-------HHHHHcCCceEEEEecC
Q psy13234 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS-------ALNRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1070 ErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~-------aL~~l~~grTvIvIAHR 1132 (1192)
+.....++++.++..+++|-..+|.++++||+.+..+......... .......+..+|.++|.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 56 GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 3344677888999999999988899999999999999998887764 33344456778888883
No 455
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.64 E-value=1e-07 Score=113.01 Aligned_cols=147 Identities=16% Similarity=0.126 Sum_probs=102.7
Q ss_pred cCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccC
Q psy13234 925 LESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARIN 1004 (1192)
Q Consensus 925 ~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~ 1004 (1192)
.+..+||+++|+|++|+|||||++.|.|..+|+.|.|.+.|+.- .+++|.+..-
T Consensus 151 l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-----------------------~ev~e~~~~~--- 204 (432)
T PRK06793 151 LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-----------------------REVKDFIRKE--- 204 (432)
T ss_pred ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc-----------------------ccHHHHHHHH---
Confidence 44444455999999999999999999999999998887766543 3344444210
Q ss_pred CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q psy13234 1005 ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVA 1084 (1192)
Q Consensus 1005 asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIA 1084 (1192)
. +..++. .|.+=..-.+-|.|+|+|.+
T Consensus 205 ---------l----------------------------------~~~gl~----------~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 205 ---------L----------------------------------GEEGMR----------KSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred ---------h----------------------------------hhcccc----------eeEEEEECCCCCHHHHHHHH
Confidence 0 111111 11122334567999999999
Q ss_pred HHHHhc-------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEEEEeCCEEEEEcC
Q psy13234 1085 IARTLL-------KAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVMHAGEIVERGR 1155 (1192)
Q Consensus 1085 LARALL-------rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~Gt 1155 (1192)
.+.+.. .++-++++||+|...|+. ++|-.++.+.- .|.|..+-+|-.+..++|-+ .++|.|...++
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 999887 788999999999999997 66665665554 46888888885555666665 37888765543
No 456
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.55 E-value=1.3e-07 Score=123.81 Aligned_cols=76 Identities=26% Similarity=0.268 Sum_probs=64.3
Q ss_pred CCCCChHHHHHHHHHHHhcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhc-CE
Q psy13234 1072 GLKLSGGEKQRVAIARTLLK--------APQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHA-DE 1141 (1192)
Q Consensus 1072 G~~LSGGQKQRIALARALLr--------dP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~a-Dr 1141 (1192)
-..|||||+|+++|||||.. +|++|++||||++||+.+-+.+.+.|.++. .|+||++|||-....... .+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 35799999999999999995 899999999999999999999999998875 569999999966665544 45
Q ss_pred EEEEeC
Q psy13234 1142 ILVMHA 1147 (1192)
Q Consensus 1142 IlVLe~ 1147 (1192)
|.|-+.
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 555543
No 457
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.51 E-value=1e-07 Score=113.21 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=53.8
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEECCeecCCCChHhhcccEEEEcCCC
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESG-DIFIDNQNIKTVSQASLRQAIGVVPQDT 987 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sG-sI~IDG~DI~~i~~~sLR~~Ig~VPQDp 987 (1192)
.++++++ +.+.+|+. ++|+||||||||||++ .++.+|++| +|.+||+++...+..+++.-= .|.|+.
T Consensus 20 ~vL~~Vs---l~i~~GEi---v~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFN---KELPSSSL---LFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCc---eeecCCCE---EEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 4677888 88888888 9999999999999999 778888888 799999999887654433222 777743
No 458
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.44 E-value=4.2e-06 Score=107.76 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=48.0
Q ss_pred HHHHhcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHc-CCceEEEEecChhHHHh
Q psy13234 1085 IARTLLKAPQIVLLDEATSAL-DTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1085 LARALLrdP~ILLLDEATSAL-D~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~ 1138 (1192)
|+|++..+|+++++|||++.| |+.+.+.+.+.+++.. .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 789999999999999999999 7899999999887764 47899999999998764
No 459
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.43 E-value=2e-06 Score=94.14 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHHHHHH-cCCceEEEEecChhH-------H-Hhc
Q psy13234 1074 KLSGGEKQRVAIARTLLK--APQIVLLDEATSALD---TKTERNIQSALNRV-CASRTTIIVAHRLST-------I-IHA 1139 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALLr--dP~ILLLDEATSALD---~eTE~~Iq~aL~~l-~~grTvIvIAHRLST-------I-~~a 1139 (1192)
..|.++++++..++..++ +|+++++||+|+.+| .+.-..+.+.++.. .+++|+++++|.... + .-+
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 456788999999999998 899999999996544 43333443445442 357899999997643 1 235
Q ss_pred CEEEEEe
Q psy13234 1140 DEILVMH 1146 (1192)
Q Consensus 1140 DrIlVLe 1146 (1192)
|-++.|+
T Consensus 180 DgvI~L~ 186 (234)
T PRK06067 180 DVYLKLR 186 (234)
T ss_pred EEEEEEE
Confidence 6666665
No 460
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.31 E-value=0.00045 Score=78.35 Aligned_cols=136 Identities=11% Similarity=0.114 Sum_probs=90.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 668 EVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGV-IVFTTMALYLVTSIVVTEWRTKFQRKMNLAD 746 (1192)
Q Consensus 668 eilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~~~~lal-Ivl~~l~l~li~~~~l~~~~~k~~r~~~~a~ 746 (1192)
..=+|+++|++...+........++..+++++.....+ ...+.+.+. ++++..++-..++..+++...+...+.++.+
T Consensus 127 NpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L-~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~E 205 (281)
T PF06472_consen 127 NPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVIL-WSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLE 205 (281)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 34468887777776666555666666666554433332 223333333 3333333334445556666666666667777
Q ss_pred HHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 747 NALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLI 804 (1192)
Q Consensus 747 s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~~~l~~lq~li 804 (1192)
++.+........|.|.|-.++.|+.|.++.++..++..+...+.......++...+..
T Consensus 206 a~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 263 (281)
T PF06472_consen 206 ADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNFY 263 (281)
T ss_pred chHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999999999999999988887777766666666666666655
No 461
>PRK01889 GTPase RsgA; Reviewed
Probab=98.29 E-value=8.4e-07 Score=103.58 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=64.1
Q ss_pred cceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHh
Q psy13234 920 LRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQ 999 (1192)
Q Consensus 920 L~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~ 999 (1192)
|...+.+|+. ++++|+||+|||||++.|.|...+..|+|.+++..-.. ...++++.++||+..+|+.+-..|+.
T Consensus 188 L~~~L~~g~~---~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 188 LAAWLSGGKT---VALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHhhcCCE---EEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhhc
Confidence 3455556666 99999999999999999999999999999998865433 23467899999999999988888887
Q ss_pred ccc
Q psy13234 1000 YAR 1002 (1192)
Q Consensus 1000 ~G~ 1002 (1192)
+..
T Consensus 262 l~~ 264 (356)
T PRK01889 262 LWD 264 (356)
T ss_pred ccC
Confidence 754
No 462
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.25 E-value=1.1e-07 Score=118.73 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHchHHHHHHhCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 747 NALNTRSIDSLLNFETVKYYGAEEYEIKEY-----GKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVV 821 (1192)
Q Consensus 747 s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf-----~~~~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv 821 (1192)
....+.+.|++.++++||..+.++....+| .....+..+...+..........+...+......+.++++++. +
T Consensus 40 ~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~-v 118 (644)
T PRK10733 40 EVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWI-F 118 (644)
T ss_pred HHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 345666778999999999999887654444 3333333332222221111111112222222333444555665 5
Q ss_pred hcCcccHH---HHHHHHHHHHHHHHH
Q psy13234 822 NNQTLTVG---DYTLFVSYILQLYVP 844 (1192)
Q Consensus 822 ~~g~iTvG---~lvl~lsyi~ql~~P 844 (1192)
..++++.| .++.|..+..++..|
T Consensus 119 ~~g~mt~G~~~~l~af~~~~~~~~~~ 144 (644)
T PRK10733 119 FMRQMQGGGGKGAMSFGKSKARMLTE 144 (644)
T ss_pred HHhhhcCCCCceeEEeccccccccCc
Confidence 66778877 455544444444433
No 463
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.24 E-value=1.2e-06 Score=96.31 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=35.3
Q ss_pred hcCCCCEEEEeCCCCC------CCHHHHHHHHHHHHHHcC--CceEEEEecCh
Q psy13234 1089 LLKAPQIVLLDEATSA------LDTKTERNIQSALNRVCA--SRTTIIVAHRL 1133 (1192)
Q Consensus 1089 LLrdP~ILLLDEATSA------LD~eTE~~Iq~aL~~l~~--grTvIvIAHRL 1133 (1192)
..++|+++|+| |+++ .|+..-..+.+.|++..+ ++|+|+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 6654 688888888888877653 68999999976
No 464
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.23 E-value=3e-06 Score=98.44 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=42.7
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEE
Q psy13234 1083 VAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEIL 1143 (1192)
Q Consensus 1083 IALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIl 1143 (1192)
=++++|+-.+|+++++||+. |.++.....+ ....|.+++...|..+.....||++
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELALT---AAETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HHHcCCcEEEEEcCCCHHHHHHHHH
Confidence 35788899999999999997 8888765443 4456899999999977766555553
No 465
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.21 E-value=6.7e-06 Score=89.99 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=41.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcC--CceEEEEecChhHHHhc
Q psy13234 1091 KAPQIVLLDEATSALDTKTERNIQSA-LNRVCA--SRTTIIVAHRLSTIIHA 1139 (1192)
Q Consensus 1091 rdP~ILLLDEATSALD~eTE~~Iq~a-L~~l~~--grTvIvIAHRLSTI~~a 1139 (1192)
.+|++++|||+.++.|+.....+..+ ++.+.+ ++++|++||..+.....
T Consensus 108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 57899999999999999998888777 555544 79999999999877654
No 466
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.21 E-value=1.6e-06 Score=101.33 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=55.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCC--CC-ceEEECCeecCCCChHhhcccEEEEcCCCc-----cccccHHHHHhcc
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDV--ES-GDIFIDNQNIKTVSQASLRQAIGVVPQDTV-----LFNNSIKFNIQYA 1001 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp--~s-GsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~-----LFnGTIreNI~~G 1001 (1192)
|..++|+|||||||||+++.|++++.+ .+ +.|.....++ ++..+.+++..++|+|... -|..+|+++++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~- 211 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR- 211 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhcc-
Confidence 444999999999999999999999853 33 4665555555 5777788777888888643 688899998885
Q ss_pred ccC
Q psy13234 1002 RIN 1004 (1192)
Q Consensus 1002 ~~~ 1004 (1192)
+||
T Consensus 212 ~Pd 214 (358)
T TIGR02524 212 KPH 214 (358)
T ss_pred CCC
Confidence 354
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.15 E-value=2.8e-06 Score=90.16 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=52.1
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcc--c-cccHHHHH
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL--F-NNSIKFNI 998 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~L--F-nGTIreNI 998 (1192)
+.+.+|+. ++|+||+||||||+++.|+++++|+.|.|.+++.+-...+ -+..++++.|++.. + .-|..+++
T Consensus 20 ~~v~~g~~---i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 20 LAVEARKN---ILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHhCCCE---EEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHHHHH
Confidence 55666666 9999999999999999999999999999999875433332 24556776665432 2 23555555
Q ss_pred h
Q psy13234 999 Q 999 (1192)
Q Consensus 999 ~ 999 (1192)
.
T Consensus 94 ~ 94 (186)
T cd01130 94 R 94 (186)
T ss_pred H
Confidence 4
No 468
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.13 E-value=2.7e-06 Score=101.39 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=59.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC---CeecCCCChHh-
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFID---NQNIKTVSQAS- 975 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~ID---G~DI~~i~~~s- 975 (1192)
.++++..|..+..+++.+ +.+.+|++ ++|+|+||||||||++.|.|+.+|+.|.|.+. |.++.++..+.
T Consensus 142 r~~v~~~l~TGi~aID~L----~~I~~Gqr---i~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 142 RARVETGLRTGVRVIDIF----TPLCAGQR---IGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred eecceEEcCCCcEEeeee----ceecCCcE---EEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 555666665544444443 34455554 99999999999999999999999999999884 67776655433
Q ss_pred ---hcccEEEEcCCCc
Q psy13234 976 ---LRQAIGVVPQDTV 988 (1192)
Q Consensus 976 ---LR~~Ig~VPQDp~ 988 (1192)
.++.|++|+|...
T Consensus 215 ~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 215 ADNLKKAVAVVATSDE 230 (450)
T ss_pred HHhhCCeEEEEEcCCC
Confidence 3468999999653
No 469
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.11 E-value=2.8e-06 Score=90.03 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=47.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT 987 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp 987 (1192)
|+.++|+||||||||||+++|.+...+ .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 556999999999999999999998876 5888888888777777788899998874
No 470
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.08 E-value=3.8e-06 Score=90.51 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=46.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 989 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~L 989 (1192)
+++|+|++|||||||++.+.+.+.+..| +.+-..|.......++.+..+++||+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 4899999999999999999999888655 55656677776667777788999998764
No 471
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.05 E-value=3.2e-05 Score=82.10 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=63.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHh-cCEEEEEeCCEEE
Q psy13234 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGEIV 1151 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~-aDrIlVLe~G~Iv 1151 (1192)
..|-||-=-=-+.|.+- ..-|++||||-|+|-+.-.-.+...|+.+.+ |.-+|+.||.+=.+.. --+|+-++.+.+.
T Consensus 129 ~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~ 207 (233)
T COG3910 129 HMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE 207 (233)
T ss_pred hhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence 45889877766777764 5579999999999999998888999987754 5789999999866543 4578888887755
Q ss_pred EEcCHHH
Q psy13234 1152 ERGRHEE 1158 (1192)
Q Consensus 1152 E~GtheE 1158 (1192)
+. +++|
T Consensus 208 ~~-~fe~ 213 (233)
T COG3910 208 ER-DFEE 213 (233)
T ss_pred cc-chHH
Confidence 54 3444
No 472
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.03 E-value=0.0004 Score=84.98 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhhheecccchhhhhhHHHHHhhhccccccccCccCCCCcccchhHHHHHHHHHhhcCCCCcccchhhh
Q psy13234 391 QVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNN 470 (1192)
Q Consensus 391 ~~~~~~~~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 470 (1192)
.+++++++.++.-+..+..|.+.+.++ |..........+...++.+.+-++ ...+++-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~i----------------d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 71 (529)
T TIGR02868 14 RLVVAILLGALALGSAVALLGVSAWLI----------------SRAAEMPPVLYLSVAAVAVRAFGI------GRAVFRY 71 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhhcchhHHHHHHHHHHHHHHH------HHHHHHH
Confidence 456677777778888899999999887 332221111111111111111111 1256778
Q ss_pred hhhhhhhheeccchhHHHHHHHHhhccccccccccccccceeeeeccC
Q psy13234 471 VRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRG 518 (1192)
Q Consensus 471 ~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1192)
++++++.++.+...+++..++|+|+-.++..|+-++++|+++..+..+
T Consensus 72 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d 119 (529)
T TIGR02868 72 LERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGAD 119 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhh
Confidence 899999999999999999999999999999999999999987655543
No 473
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.03 E-value=1.1e-05 Score=84.37 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=44.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE-----------CCeecCCCChHhhc-----ccEEEEcCCCccccc
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFI-----------DNQNIKTVSQASLR-----QAIGVVPQDTVLFNN 992 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~I-----------DG~DI~~i~~~sLR-----~~Ig~VPQDp~LFnG 992 (1192)
|+.++|+|||||||||+++.|.+.+.+. |.+.+ +|.+...++.+... +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 4569999999999999999999987654 55544 66666666655542 347777776655444
No 474
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.97 E-value=5.3e-06 Score=87.71 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=47.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc-cEEEEcCCCc-cccccHHHHHhcc
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ-AIGVVPQDTV-LFNNSIKFNIQYA 1001 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~-~Ig~VPQDp~-LFnGTIreNI~~G 1001 (1192)
||.++++|+|||||||+++.|.++..+ +.+||.++... ...|+ ..++.+|+.. +...++.+|+.++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 455999999999999999999999877 68999988542 23332 3556666643 3345666666553
No 475
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.96 E-value=1.1e-05 Score=108.20 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=54.7
Q ss_pred CCCCCChHHHHHHH----HHHH--------hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecCh
Q psy13234 1071 RGLKLSGGEKQRVA----IART--------LLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 1133 (1192)
Q Consensus 1071 rG~~LSGGQKQRIA----LARA--------LLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRL 1133 (1192)
+...||||||||++ +|+| +..+|++++||||++++|+.+.+.+.+.+.++ +.++|+++|++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 35689999999996 6766 55799999999999999999999999999887 78999999986
No 476
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.94 E-value=9.2e-05 Score=87.45 Aligned_cols=100 Identities=26% Similarity=0.286 Sum_probs=75.3
Q ss_pred HHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCC-----CHHHHHHH----------
Q psy13234 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL-----DTKTERNI---------- 1113 (1192)
Q Consensus 1049 ~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSAL-----D~eTE~~I---------- 1113 (1192)
+.+++..||.+||.|.||.= =--.+=||---|=-.|..|+=..+++|++||=|||- |..-.+.|
T Consensus 298 ~~vDISpFI~~LP~g~dT~~-FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPf 376 (448)
T PF09818_consen 298 EGVDISPFINNLPGGKDTTC-FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPF 376 (448)
T ss_pred eCccchHHHhhCCCCCCCCc-ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchH
Confidence 66788999999999999983 223366999999999999999999999999999985 55556655
Q ss_pred ---HHHHHHHcCCceEEEEe-cChhHHHhcCEEEEEeCCEE
Q psy13234 1114 ---QSALNRVCASRTTIIVA-HRLSTIIHADEILVMHAGEI 1150 (1192)
Q Consensus 1114 ---q~aL~~l~~grTvIvIA-HRLSTI~~aDrIlVLe~G~I 1150 (1192)
.+.|.+. .|-++|+|+ =-=..+..||+|++|++=+.
T Consensus 377 idrvr~l~~~-~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 377 IDRVRSLYEK-LGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred HHHHHHHHHH-cCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 2233232 254444444 44456788999999997654
No 477
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.94 E-value=2.4e-06 Score=86.61 Aligned_cols=64 Identities=25% Similarity=0.426 Sum_probs=53.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-------------CCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHh
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDV-------------ESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQ 999 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp-------------~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~ 999 (1192)
++|+||||||||||++.|.+.+++ ..|+ +||++..-++.+++++. +.|+.++..+++..| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999764 3444 58888888888888875 568889999999888 5
Q ss_pred ccc
Q psy13234 1000 YAR 1002 (1192)
Q Consensus 1000 ~G~ 1002 (1192)
||.
T Consensus 76 yg~ 78 (137)
T cd00071 76 YGT 78 (137)
T ss_pred ecC
Confidence 764
No 478
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.93 E-value=5e-06 Score=86.89 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=53.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCC------------CCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYD------------VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFN 997 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlyd------------p~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreN 997 (1192)
|+.++|+||||||||||++.|.+.++ |..|+ ++|++..-++.+.+.+.+ +++.++..+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 45699999999999999999999864 33343 466666666666666654 57777877777777
Q ss_pred HhccccCCCHHHHHHHh
Q psy13234 998 IQYARINASEEEVKEAA 1014 (1192)
Q Consensus 998 I~~G~~~asdEeV~eAa 1014 (1192)
. ||. +.+.+.+++
T Consensus 76 ~-y~~---~~~~i~~~~ 88 (180)
T TIGR03263 76 Y-YGT---PKSPVEEAL 88 (180)
T ss_pred e-eCC---cHHHHHHHH
Confidence 3 652 344454444
No 479
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.92 E-value=8e-06 Score=97.25 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=59.3
Q ss_pred cccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCc---eEEECCeecCCCChHhh------cccEEEEcCC
Q psy13234 916 AIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESG---DIFIDNQNIKTVSQASL------RQAIGVVPQD 986 (1192)
Q Consensus 916 ~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sG---sI~IDG~DI~~i~~~sL------R~~Ig~VPQD 986 (1192)
++.+++.. .+..+||+++|+|+||+|||||+++|.|+++++.+ .|-.+|.+++++..+.+ |+.++++|||
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 33333333 44444555999999999999999999999999864 44455666665554443 5579999999
Q ss_pred Ccccc-ccHHHHHh
Q psy13234 987 TVLFN-NSIKFNIQ 999 (1192)
Q Consensus 987 p~LFn-GTIreNI~ 999 (1192)
...+. -++.+|..
T Consensus 221 ~s~~~rl~a~e~a~ 234 (434)
T PRK07196 221 ESPLMRIKATELCH 234 (434)
T ss_pred CChhhhHHHHHHHH
Confidence 87775 46777775
No 480
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.91 E-value=7.5e-05 Score=72.67 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc------CCceEEEEecChh
Q psy13234 1080 KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC------ASRTTIIVAHRLS 1134 (1192)
Q Consensus 1080 KQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~------~grTvIvIAHRLS 1134 (1192)
++.....++..+++.++++||+-.. +.+....+.+.+.... ++.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777778889999999998775 5666677777777664 4678888888654
No 481
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=3.9e-05 Score=92.65 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=42.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhc
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQY 1000 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~ 1000 (1192)
+.+++|||+|+||||++..|.+.+....|.. ++++|++|+ |.-+..||+.+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHH
Confidence 3499999999999999999999887776642 588999998 66777899974
No 482
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.89 E-value=0.0045 Score=78.51 Aligned_cols=112 Identities=18% Similarity=0.322 Sum_probs=77.7
Q ss_pred hhhhcccccCCCCcchHHHHHHHHHHHHHhhhheecccchhhhhhHHHHHhhhccccccccCccCCCCcccchhH-HHHH
Q psy13234 373 IKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKPLVFRWDY-VLIF 451 (1192)
Q Consensus 373 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 451 (1192)
..-++|.+|+.+.. ..-+++.-++.-+.++.-|++.+.++ |..-..... ++.. +.+.
T Consensus 142 ~~~f~~~~~~~~~~-----l~~v~~~sl~l~i~~l~~p~~~q~vi----------------D~Vl~~~~~-~tL~vl~ig 199 (709)
T COG2274 142 LSWFIPLLFKYRRL-----LFEVLLASLLLQLLALATPLFSQIVI----------------DKVLPDASR-STLTVLAIG 199 (709)
T ss_pred hHhHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhccCch-hHHHHHHHH
Confidence 34455555554433 34456666677788899999999888 554433221 1222 2222
Q ss_pred HHHHhhcCCCCcccchhhhhhhhhhhheeccchhHHHHHHHHhhcccccccccccccccee
Q psy13234 452 VGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVL 512 (1192)
Q Consensus 452 ~~~~~~~g~~~~~~~~~~~~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1192)
+++..+- ..++.-+|+++....++.-.-++.-++|+||=.|++.+.-+|.+||+.
T Consensus 200 ~~~~~l~------~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~ 254 (709)
T COG2274 200 LLLAALF------EALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEII 254 (709)
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHH
Confidence 2222221 368889999999999998888999999999999999999999999964
No 483
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.87 E-value=1e-05 Score=86.16 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+||+|+|||||||+++.|.+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999987
No 484
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.86 E-value=0.00012 Score=94.22 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=47.6
Q ss_pred HhcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHc-CCceEEEEecChhHH----------HhcCEEEEEeC
Q psy13234 1088 TLLKAPQIVLLDEATSALD-TKTERNIQSALNRVC-ASRTTIIVAHRLSTI----------IHADEILVMHA 1147 (1192)
Q Consensus 1088 ALLrdP~ILLLDEATSALD-~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI----------~~aDrIlVLe~ 1147 (1192)
.+-++|+++++|||...|| +...+.+.+.+++.. .+..++++||.++.+ .+|+.-+.|-|
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 4557899999999999999 788888888888764 468899999998764 45666566654
No 485
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.85 E-value=3.9e-05 Score=102.14 Aligned_cols=36 Identities=36% Similarity=0.448 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC-CCCCceEEECCe
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFY-DVESGDIFIDNQ 966 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRly-dp~sGsI~IDG~ 966 (1192)
+.++|+|++|+|||||++.+.+-. +..+|++.+|+.
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 349999999999999999995544 455899999874
No 486
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.84 E-value=1.1e-05 Score=86.36 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=43.2
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCeecCCCChHhhcccEEEEcCCC
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDV-ESGDIFIDNQNIKTVSQASLRQAIGVVPQDT 987 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRlydp-~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp 987 (1192)
+|+.++++|+|||||||++++|.+.+.+ ..|.+.+||.+++. .+...++|.+|+.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 3445999999999999999999996654 45789999988763 2334578888876
No 487
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.80 E-value=2.1e-05 Score=92.53 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=46.7
Q ss_pred ccccccccccceeeecCCCCccc-----------cccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13234 893 ENKIEENMEEDQFGFRKGKGTRD-----------AIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE 957 (1192)
Q Consensus 893 ~g~I~~~fenVsFsY~~~~~vL~-----------~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~ 957 (1192)
.+.+. |+|++|.||.++..|+ |+. +.+.+|+. ++||||+|+|||||+++|.+.+...
T Consensus 128 ~~ri~--Fe~LTf~YP~er~~Le~~~~~~~~R~id~~---~pig~Gq~---~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 128 KNRVL--FENLTPLYPNERLRLETSTEDLSTRVLDLF---APIGKGQR---GLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCeE--EEEeeecCCCccceeecCccccceeeeeeE---EEeCCCCE---EEEECCCCCChhHHHHHHHHhhccc
Confidence 35666 9999999998777774 444 66666666 9999999999999999999998654
No 488
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.78 E-value=0.00022 Score=91.89 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=48.9
Q ss_pred HHhcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHH-cCCceEEEEecChhHH----------HhcCEEEEEeCCE
Q psy13234 1087 RTLLKAPQIVLLDEATSALD-TKTERNIQSALNRV-CASRTTIIVAHRLSTI----------IHADEILVMHAGE 1149 (1192)
Q Consensus 1087 RALLrdP~ILLLDEATSALD-~eTE~~Iq~aL~~l-~~grTvIvIAHRLSTI----------~~aDrIlVLe~G~ 1149 (1192)
+.+-++|+++++|||++.|| +.+.+.+.+.++.. ..+.+++++||.++.+ .+|+--++|.+.+
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 33446899999999999999 67788888888765 3568999999998744 4567666776654
No 489
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.76 E-value=6e-05 Score=98.08 Aligned_cols=76 Identities=25% Similarity=0.338 Sum_probs=65.8
Q ss_pred CCCChHHHHHHHHH------HHhcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC-ceEEEEecChhHHHhcCEEE
Q psy13234 1073 LKLSGGEKQRVAIA------RTLLKA--PQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHADEIL 1143 (1192)
Q Consensus 1073 ~~LSGGQKQRIALA------RALLrd--P~ILLLDEATSALD~eTE~~Iq~aL~~l~~g-rTvIvIAHRLSTI~~aDrIl 1143 (1192)
..|||||+=.++|| ..+-.+ -+.++|||||.+||+++-..+.++|.+...+ +++|||||.......+|.++
T Consensus 814 ~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~i 893 (908)
T COG0419 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRI 893 (908)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeEE
Confidence 48999999866554 445566 6999999999999999999999999988764 99999999999999999999
Q ss_pred EEeCC
Q psy13234 1144 VMHAG 1148 (1192)
Q Consensus 1144 VLe~G 1148 (1192)
.++..
T Consensus 894 ~V~k~ 898 (908)
T COG0419 894 RVKKD 898 (908)
T ss_pred EEEec
Confidence 88744
No 490
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.76 E-value=3.4e-05 Score=73.08 Aligned_cols=59 Identities=34% Similarity=0.457 Sum_probs=40.0
Q ss_pred CCCCcccccCCCCCCChHHHHH-H------HHHHHhcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy13234 1061 PDGYDTQVGERGLKLSGGEKQR-V------AIARTLLK------APQIVLLDEATSALDTKTERNIQSALNR 1119 (1192)
Q Consensus 1061 P~GyDT~VGErG~~LSGGQKQR-I------ALARALLr------dP~ILLLDEATSALD~eTE~~Iq~aL~~ 1119 (1192)
|+|-+..+-..-.++||||||. + |+|-.+-. .|++++||||+++||+++-+.+.+.+++
T Consensus 19 ~~g~~~~~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 19 EDGNEVETSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp TTEECTCEEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCceeeeeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3444433333445899999964 2 23333323 3689999999999999999999988864
No 491
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.75 E-value=6.8e-06 Score=99.69 Aligned_cols=64 Identities=17% Similarity=0.327 Sum_probs=46.2
Q ss_pred CCCChHHHHHHHHH--HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhH--------H-H-hc
Q psy13234 1073 LKLSGGEKQRVAIA--RTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLST--------I-I-HA 1139 (1192)
Q Consensus 1073 ~~LSGGQKQRIALA--RALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLST--------I-~-~a 1139 (1192)
..+|+||+||+.|+ .++..+|+.. ....+.+.+.++.+. .++|+|+++|+.+. + . -|
T Consensus 114 ~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~la 183 (484)
T TIGR02655 114 YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVS 183 (484)
T ss_pred HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEee
Confidence 46899999999999 6766655433 355666776666543 47999999998753 1 1 37
Q ss_pred CEEEEEe
Q psy13234 1140 DEILVMH 1146 (1192)
Q Consensus 1140 DrIlVLe 1146 (1192)
|.|+.|+
T Consensus 184 DgVI~L~ 190 (484)
T TIGR02655 184 DNVVILR 190 (484)
T ss_pred eeEEEEE
Confidence 9999887
No 492
>PRK08149 ATP synthase SpaL; Validated
Probab=97.74 E-value=2.4e-05 Score=93.13 Aligned_cols=73 Identities=11% Similarity=0.152 Sum_probs=56.0
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCeecCCCChHhhc----ccEEEEcC
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVES---GDIFIDNQNIKTVSQASLR----QAIGVVPQ 985 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~s---GsI~IDG~DI~~i~~~sLR----~~Ig~VPQ 985 (1192)
...++.+++.. .+...||+++|+|+||+|||||++.|.|..+++. |.|-.+|.+++++..+.++ +++++|..
T Consensus 135 l~tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~ 213 (428)
T PRK08149 135 LITGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYA 213 (428)
T ss_pred ccCCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEE
Confidence 33444443343 4555555599999999999999999999999988 9999999999988766665 56777754
Q ss_pred C
Q psy13234 986 D 986 (1192)
Q Consensus 986 D 986 (1192)
.
T Consensus 214 ~ 214 (428)
T PRK08149 214 T 214 (428)
T ss_pred C
Confidence 3
No 493
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.74 E-value=4.4e-05 Score=81.03 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC-ceEEEEecChhH---HHhcCEEEEEeCC
Q psy13234 1078 GEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLST---IIHADEILVMHAG 1148 (1192)
Q Consensus 1078 GQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~g-rTvIvIAHRLST---I~~aDrIlVLe~G 1148 (1192)
|+-+|-+||.++..||+.+..+| +-+||...+.+.+.+.+..++ .++++-+|.+.. -..||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 67899999999999999988887 789999999999998877543 699999999843 4679999999865
No 494
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.71 E-value=1.5e-05 Score=85.79 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=24.7
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDV 956 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRlydp 956 (1192)
+|+.++|+|+||||||||++.|.+.+++
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3555999999999999999999998764
No 495
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.67 E-value=0.013 Score=72.60 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=81.8
Q ss_pred HhhhhcccccCCCCcchHHHHHHHHHHHHHhhhheecccchhhhhhHHHHHhhhccccccccCc-cCCCCcccchhH-HH
Q psy13234 372 KIKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNS-LVDKPLVFRWDY-VL 449 (1192)
Q Consensus 372 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~ 449 (1192)
.++.+++|+++ .+....+++++.++.-++++.+|++++.++ |. +..... ..+.. +.
T Consensus 5 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii----------------d~~~~~~~~-~~~~~~~~ 62 (576)
T TIGR02204 5 PLAALWPFVRP-----YRGRVLAALVALLITAAATLSLPYAVRLMI----------------DHGFSKDSS-GLLNRYFA 62 (576)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------HhhcccccH-HHHHHHHH
Confidence 45556666653 345666777788899999999999999988 44 222111 11111 11
Q ss_pred HHHHHHhhcCCCCcccchhhhhhhhhhhheeccchhHHHHHHHHhhccccccccccccccceeeeeccC
Q psy13234 450 IFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRG 518 (1192)
Q Consensus 450 ~~~~~~~~~g~~~~~~~~~~~~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1192)
++++.-. ...+++-+|+++..++++...+.+..++|+|+.+++.+++.++++|+++..++++
T Consensus 63 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d 124 (576)
T TIGR02204 63 FLLVVAL-------VLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTD 124 (576)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHH
Confidence 1222111 1245667889999999999999999999999999999999999999987555443
No 496
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.67 E-value=0.0003 Score=73.90 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=38.5
Q ss_pred ccCCCCCCChHHHHHHH--HHHHhcC-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q psy13234 1068 VGERGLKLSGGEKQRVA--IARTLLK-APQIVLLDEATSALDTKTERNIQSALNRVCA 1122 (1192)
Q Consensus 1068 VGErG~~LSGGQKQRIA--LARALLr-dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~ 1122 (1192)
++..--.+|+||+|++. +++.+-. +++++ ||||+|.++-+.+.+.|.+..+
T Consensus 141 v~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 141 VLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 45555568999999987 6666643 34443 9999999999999999887654
No 497
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.66 E-value=0.00012 Score=78.42 Aligned_cols=34 Identities=32% Similarity=0.325 Sum_probs=30.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 965 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG 965 (1192)
+++++|+||+|||||++.|+|...+.+|.+..+.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~ 36 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGV 36 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCc
Confidence 3899999999999999999999988889888764
No 498
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.65 E-value=0.014 Score=73.92 Aligned_cols=103 Identities=11% Similarity=0.219 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhhhheecccchhhhhhHHHHHhhhccccccccCccCCCCcc-cchhHHHHHHHHHhhcCCCCcccchh
Q psy13234 390 LQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKPLV-FRWDYVLIFVGFKFLQGGGTGGMGVL 468 (1192)
Q Consensus 390 ~~~~~~~~~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 468 (1192)
..++.++++.++.-++++..|++.+.++ |........ .-|...+.++++-.+ .+++
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~p~~~~~ii----------------d~v~~~~~~~~l~~~~~~~~~~~~~-------~~~~ 192 (686)
T TIGR03797 136 RDLLAILAMGLLGTLLGMLVPIATGILI----------------GTAIPDADRSLLVQIALALLAAAVG-------AAAF 192 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHhhhcCChhHHHHHHHHHHHHHHH-------HHHH
Confidence 3455666667777789999999999988 444322110 011122223332222 3678
Q ss_pred hhhhhhhhhheeccchhHHHHHHHHhhccccccccccccccceeeee
Q psy13234 469 NNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVM 515 (1192)
Q Consensus 469 ~~~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1192)
+-+|+++..++++...+.++.++|+|+-.+++.|.-++++|+++..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~ 239 (686)
T TIGR03797 193 QLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRA 239 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHH
Confidence 89999999999999999999999999999999999999999876443
No 499
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.65 E-value=0.00015 Score=90.59 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=31.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCc--------eEEECCeecC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVESG--------DIFIDNQNIK 969 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~sG--------sI~IDG~DI~ 969 (1192)
+.|+||+|+||||+++++.++..+..| -|.+||.++.
T Consensus 178 vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~ 222 (615)
T TIGR02903 178 IILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR 222 (615)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc
Confidence 999999999999999999999875544 4888887763
No 500
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.64 E-value=5.8e-05 Score=81.25 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=34.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccc
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 992 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnG 992 (1192)
+..++|+|+||||||||++.|.+.++ ...+++++||.+.++.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~ 47 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQ 47 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCc
Confidence 34599999999999999999999872 2358889999987765
Done!