Query psy13234
Match_columns 1192
No_of_seqs 444 out of 2807
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:35:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 5.8E-93 2E-97 928.9 60.0 607 503-1175 38-655 (1321)
2 4f4c_A Multidrug resistance pr 100.0 9.5E-93 3.3E-97 926.9 42.6 504 625-1177 809-1320(1321)
3 3qf4_B Uncharacterized ABC tra 100.0 1.9E-83 6.5E-88 780.9 55.7 502 625-1176 92-593 (598)
4 3qf4_A ABC transporter, ATP-bi 100.0 3.4E-82 1.2E-86 768.5 60.5 503 624-1175 77-580 (587)
5 4a82_A Cystic fibrosis transme 100.0 4.5E-82 1.6E-86 765.9 53.4 504 622-1174 73-577 (578)
6 3b5x_A Lipid A export ATP-bind 100.0 1.7E-80 5.7E-85 752.7 65.2 501 623-1174 78-580 (582)
7 3b60_A Lipid A export ATP-bind 100.0 1.5E-80 5.2E-85 753.0 60.5 501 623-1174 78-580 (582)
8 2yl4_A ATP-binding cassette SU 100.0 9.9E-80 3.4E-84 747.7 60.0 504 624-1176 76-586 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 1.4E-79 4.7E-84 801.1 53.9 504 623-1175 121-627 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 8.3E-78 2.8E-82 784.4 48.9 504 626-1178 765-1275(1284)
11 3nh6_A ATP-binding cassette SU 100.0 3.8E-64 1.3E-68 565.6 25.6 279 851-1176 14-292 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 4.6E-53 1.6E-57 462.0 27.9 237 895-1173 7-245 (247)
13 2ghi_A Transport protein; mult 100.0 3.2E-52 1.1E-56 458.5 27.3 239 894-1175 16-256 (260)
14 1mv5_A LMRA, multidrug resista 100.0 6.6E-53 2.3E-57 459.1 18.0 235 900-1174 4-239 (243)
15 2ixe_A Antigen peptide transpo 100.0 2.6E-51 8.8E-56 454.0 26.4 239 894-1174 15-258 (271)
16 3gd7_A Fusion complex of cysti 100.0 1.8E-48 6.1E-53 451.2 21.9 231 894-1168 18-250 (390)
17 2cbz_A Multidrug resistance-as 100.0 3.2E-48 1.1E-52 421.1 22.6 222 900-1175 6-231 (237)
18 2pze_A Cystic fibrosis transme 100.0 1.1E-47 3.7E-52 414.8 24.3 220 895-1170 6-227 (229)
19 3gfo_A Cobalt import ATP-bindi 100.0 1.2E-45 4.1E-50 409.7 21.8 224 896-1168 8-240 (275)
20 1ji0_A ABC transporter; ATP bi 100.0 5.2E-45 1.8E-49 396.5 23.1 216 900-1162 9-229 (240)
21 3tui_C Methionine import ATP-b 100.0 1E-44 3.5E-49 415.7 24.7 225 895-1168 24-261 (366)
22 3tif_A Uncharacterized ABC tra 100.0 8.3E-45 2.8E-49 393.9 22.3 215 900-1160 4-233 (235)
23 4g1u_C Hemin import ATP-bindin 100.0 3.9E-44 1.3E-48 395.6 20.7 215 900-1162 14-238 (266)
24 2olj_A Amino acid ABC transpor 100.0 1.1E-43 3.8E-48 391.6 24.2 218 896-1163 25-250 (263)
25 2bbs_A Cystic fibrosis transme 100.0 5.8E-44 2E-48 399.0 21.9 217 894-1170 39-256 (290)
26 1vpl_A ABC transporter, ATP-bi 100.0 2.6E-43 9E-48 387.1 25.6 217 895-1162 15-236 (256)
27 2yz2_A Putative ABC transporte 100.0 1.3E-43 4.4E-48 391.2 22.3 214 900-1163 5-229 (266)
28 1b0u_A Histidine permease; ABC 100.0 2.8E-43 9.6E-48 387.8 23.8 216 900-1163 9-244 (262)
29 1g6h_A High-affinity branched- 100.0 2.3E-43 8E-48 387.1 22.5 229 896-1159 8-240 (257)
30 2pcj_A ABC transporter, lipopr 100.0 1.1E-43 3.8E-48 382.3 18.6 209 900-1156 7-223 (224)
31 3rlf_A Maltose/maltodextrin im 100.0 4.2E-43 1.4E-47 404.5 23.4 219 900-1168 6-231 (381)
32 3fvq_A Fe(3+) IONS import ATP- 100.0 4.1E-43 1.4E-47 402.0 23.0 222 900-1169 7-237 (359)
33 1z47_A CYSA, putative ABC-tran 100.0 8.2E-43 2.8E-47 399.3 24.4 218 895-1163 14-237 (355)
34 2onk_A Molybdate/tungstate ABC 100.0 4.9E-43 1.7E-47 381.5 20.3 211 900-1163 4-218 (240)
35 2it1_A 362AA long hypothetical 100.0 9.3E-43 3.2E-47 399.9 23.2 214 900-1163 6-225 (362)
36 2qi9_C Vitamin B12 import ATP- 100.0 6.8E-43 2.3E-47 382.4 20.9 213 900-1170 7-230 (249)
37 2yyz_A Sugar ABC transporter, 100.0 1.7E-42 5.9E-47 397.3 24.6 214 900-1163 6-225 (359)
38 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-42 4.2E-47 398.0 21.2 216 900-1163 6-232 (353)
39 2ihy_A ABC transporter, ATP-bi 100.0 4.8E-43 1.7E-47 389.5 17.2 223 896-1162 22-253 (279)
40 3d31_A Sulfate/molybdate ABC t 100.0 1.4E-42 4.9E-47 396.6 21.5 212 900-1163 4-219 (348)
41 1v43_A Sugar-binding transport 100.0 2.8E-42 9.7E-47 397.2 24.0 216 896-1163 12-233 (372)
42 1g29_1 MALK, maltose transport 100.0 4.3E-42 1.5E-46 395.9 22.9 214 900-1163 6-231 (372)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 3E-42 1E-46 376.9 20.1 217 900-1158 6-230 (250)
44 2zu0_C Probable ATP-dependent 100.0 3.9E-42 1.3E-46 379.7 18.7 227 895-1160 20-253 (267)
45 2pjz_A Hypothetical protein ST 100.0 1.1E-41 3.8E-46 375.6 19.4 205 900-1162 4-216 (263)
46 2nq2_C Hypothetical ABC transp 100.0 1.6E-41 5.5E-46 372.2 19.4 215 900-1170 7-225 (253)
47 1sgw_A Putative ABC transporte 100.0 2.8E-40 9.6E-45 354.2 14.1 200 895-1151 10-211 (214)
48 2v9p_A Replication protein E1; 100.0 3.4E-39 1.2E-43 362.6 -15.5 241 824-1178 38-280 (305)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 2.1E-32 7.1E-37 329.2 16.7 198 900-1162 290-494 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 4.6E-32 1.6E-36 326.0 17.8 200 900-1161 272-477 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 2.9E-32 9.8E-37 331.9 16.2 198 900-1162 360-564 (607)
52 3j16_B RLI1P; ribosome recycli 100.0 7.6E-32 2.6E-36 328.0 17.6 205 900-1163 349-561 (608)
53 3ux8_A Excinuclease ABC, A sub 100.0 9.9E-32 3.4E-36 330.8 14.1 101 1068-1168 537-647 (670)
54 3ux8_A Excinuclease ABC, A sub 100.0 9.2E-31 3.2E-35 322.2 17.2 216 910-1168 30-305 (670)
55 2iw3_A Elongation factor 3A; a 100.0 8.4E-31 2.9E-35 330.3 14.9 229 896-1155 672-981 (986)
56 3pih_A Uvrabc system protein A 100.0 2.1E-30 7.2E-35 326.2 18.3 105 1067-1171 798-912 (916)
57 3bk7_A ABC transporter ATP-bin 100.0 2.1E-30 7.2E-35 315.5 16.1 193 901-1148 95-304 (607)
58 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-30 6.5E-35 312.2 14.8 193 901-1148 25-234 (538)
59 2iw3_A Elongation factor 3A; a 100.0 4.7E-29 1.6E-33 314.5 22.0 195 900-1163 438-637 (986)
60 3ozx_A RNAse L inhibitor; ATP 100.0 7.4E-30 2.5E-34 306.9 12.6 192 903-1149 5-214 (538)
61 3j16_B RLI1P; ribosome recycli 100.0 4.5E-29 1.5E-33 303.7 14.4 197 901-1150 81-299 (608)
62 4aby_A DNA repair protein RECN 100.0 1.1E-28 3.7E-33 285.5 15.3 233 913-1154 50-381 (415)
63 2npi_A Protein CLP1; CLP1-PCF1 99.9 8.6E-31 2.9E-35 309.6 -8.0 201 900-1170 121-348 (460)
64 2vf7_A UVRA2, excinuclease ABC 99.9 1.3E-27 4.4E-32 298.8 14.0 100 1068-1167 724-833 (842)
65 2r6f_A Excinuclease ABC subuni 99.9 6.3E-27 2.2E-31 293.4 15.9 104 1067-1170 838-951 (972)
66 2ygr_A Uvrabc system protein A 99.9 1.9E-26 6.5E-31 290.0 18.0 106 1067-1172 856-971 (993)
67 1e69_A Chromosome segregation 99.9 2.5E-26 8.7E-31 259.1 13.2 214 922-1158 20-310 (322)
68 3b85_A Phosphate starvation-in 99.9 5.9E-27 2E-31 249.8 -4.6 150 929-1149 21-171 (208)
69 1z6g_A Guanylate kinase; struc 99.9 1.2E-27 4.2E-32 255.6 -14.6 165 913-1147 12-193 (218)
70 1ye8_A Protein THEP1, hypothet 99.9 2.4E-25 8.2E-30 231.7 -1.8 147 932-1152 2-159 (178)
71 2pt7_A CAG-ALFA; ATPase, prote 99.9 5.8E-25 2E-29 249.7 -3.1 140 900-1149 151-291 (330)
72 4gp7_A Metallophosphoesterase; 99.9 4E-24 1.4E-28 219.8 2.9 146 922-1142 4-168 (171)
73 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.4E-22 4.7E-27 233.0 15.3 82 1071-1152 276-364 (365)
74 2dpy_A FLII, flagellum-specifi 99.9 5.4E-24 1.8E-28 250.3 -4.9 194 895-1161 131-344 (438)
75 2eyu_A Twitching motility prot 99.8 6.1E-25 2.1E-29 241.8 -16.2 206 900-1134 8-241 (261)
76 2ewv_A Twitching motility prot 99.8 1.8E-24 6.2E-29 249.3 -13.9 192 928-1135 134-353 (372)
77 2f1r_A Molybdopterin-guanine d 99.8 7.7E-24 2.6E-28 219.5 -8.9 111 931-1096 3-125 (171)
78 3sop_A Neuronal-specific septi 99.8 8.3E-23 2.8E-27 225.9 -5.3 149 933-1137 5-154 (270)
79 1tq4_A IIGP1, interferon-induc 99.8 9.9E-23 3.4E-27 237.7 -6.0 175 912-1148 37-254 (413)
80 3aez_A Pantothenate kinase; tr 99.8 2.4E-22 8.3E-27 226.6 -5.4 185 890-1149 38-246 (312)
81 1lvg_A Guanylate kinase, GMP k 99.8 1.6E-23 5.5E-28 220.4 -15.0 156 930-1147 4-173 (198)
82 3b9q_A Chloroplast SRP recepto 99.8 4.9E-21 1.7E-25 215.1 2.5 170 922-1150 95-284 (302)
83 2o5v_A DNA replication and rep 99.8 1.8E-19 6E-24 207.0 14.2 82 1074-1160 265-355 (359)
84 2i3b_A HCR-ntpase, human cance 99.8 9.4E-22 3.2E-26 206.8 -5.3 159 930-1154 1-169 (189)
85 3pih_A Uvrabc system protein A 99.8 1.4E-19 4.8E-24 228.3 7.9 95 1069-1163 459-562 (916)
86 2og2_A Putative signal recogni 99.8 5.7E-20 1.9E-24 211.0 3.2 170 922-1150 152-341 (359)
87 2gza_A Type IV secretion syste 99.8 1.4E-20 4.6E-25 216.2 -5.0 219 824-1088 63-301 (361)
88 3asz_A Uridine kinase; cytidin 99.7 5E-21 1.7E-25 201.0 -10.1 143 929-1133 5-161 (211)
89 2vf7_A UVRA2, excinuclease ABC 99.7 1E-18 3.5E-23 218.8 7.7 186 938-1163 270-477 (842)
90 4ad8_A DNA repair protein RECN 99.7 4.5E-18 1.5E-22 203.6 12.1 76 1073-1148 395-473 (517)
91 1znw_A Guanylate kinase, GMP k 99.7 3.1E-20 1.1E-24 195.8 -6.4 164 924-1146 17-202 (207)
92 1lw7_A Transcriptional regulat 99.7 3.2E-20 1.1E-24 212.6 -6.9 142 922-1102 163-329 (365)
93 2obl_A ESCN; ATPase, hydrolase 99.7 8E-19 2.7E-23 200.7 1.7 190 900-1159 48-253 (347)
94 3qkt_A DNA double-strand break 99.7 7.8E-17 2.7E-21 183.0 17.4 77 1073-1149 247-332 (339)
95 1cr0_A DNA primase/helicase; R 99.7 4.4E-18 1.5E-22 188.5 6.9 181 912-1150 23-237 (296)
96 2r6f_A Excinuclease ABC subuni 99.7 1.1E-17 3.7E-22 210.4 10.8 93 1070-1162 500-601 (972)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3.8E-17 1.3E-21 165.7 11.1 88 1063-1150 41-142 (148)
98 1w1w_A Structural maintenance 99.7 3.3E-17 1.1E-21 191.5 10.2 73 1074-1146 333-410 (430)
99 1tf7_A KAIC; homohexamer, hexa 99.7 5.8E-19 2E-23 211.7 -5.1 172 906-1148 20-210 (525)
100 1odf_A YGR205W, hypothetical 3 99.7 5.7E-19 1.9E-23 197.3 -6.2 129 930-1109 31-169 (290)
101 1tf7_A KAIC; homohexamer, hexa 99.7 4.6E-17 1.6E-21 195.2 9.7 151 922-1149 276-444 (525)
102 2jeo_A Uridine-cytidine kinase 99.7 1.6E-18 5.6E-23 187.5 -3.0 176 910-1162 11-188 (245)
103 1rj9_A FTSY, signal recognitio 99.7 1.2E-17 4.2E-22 187.7 3.5 149 929-1135 101-260 (304)
104 2o8b_B DNA mismatch repair pro 99.7 1.8E-17 6.2E-22 212.0 3.3 167 903-1157 761-938 (1022)
105 2ygr_A Uvrabc system protein A 99.7 4.4E-16 1.5E-20 196.6 15.2 93 1070-1162 517-618 (993)
106 4a74_A DNA repair and recombin 99.6 2.2E-17 7.7E-22 174.0 2.4 148 923-1149 21-201 (231)
107 1pzn_A RAD51, DNA repair and r 99.6 8.3E-18 2.8E-22 192.3 -2.3 160 922-1160 126-314 (349)
108 3kta_B Chromosome segregation 99.6 5.9E-16 2E-20 160.8 11.3 80 1072-1151 62-147 (173)
109 3szr_A Interferon-induced GTP- 99.6 3.9E-17 1.3E-21 199.4 -4.2 162 933-1160 48-236 (608)
110 3c8u_A Fructokinase; YP_612366 99.6 2.1E-18 7E-23 182.1 -14.2 117 928-1102 20-140 (208)
111 2ehv_A Hypothetical protein PH 99.6 2.6E-16 8.9E-21 167.9 1.4 161 923-1146 26-206 (251)
112 1ewq_A DNA mismatch repair pro 99.6 3.6E-16 1.2E-20 194.8 2.7 131 911-1139 566-704 (765)
113 1nij_A Hypothetical protein YJ 99.6 1.4E-17 4.9E-22 187.7 -9.4 156 932-1133 6-189 (318)
114 3thx_A DNA mismatch repair pro 99.6 1.1E-15 3.7E-20 193.8 5.9 86 1074-1159 721-811 (934)
115 3jvv_A Twitching mobility prot 99.5 1.3E-15 4.5E-20 174.8 3.4 148 901-1147 92-245 (356)
116 1pui_A ENGB, probable GTP-bind 99.5 2.6E-16 9E-21 163.7 -2.9 54 1069-1122 144-198 (210)
117 2qag_C Septin-7; cell cycle, c 99.5 8.1E-16 2.8E-20 179.9 0.9 166 894-1136 10-180 (418)
118 1zp6_A Hypothetical protein AT 99.5 3.4E-16 1.2E-20 161.2 -4.0 161 929-1141 8-168 (191)
119 1s96_A Guanylate kinase, GMP k 99.5 1.6E-15 5.4E-20 162.9 0.9 143 923-1162 12-161 (219)
120 2w0m_A SSO2452; RECA, SSPF, un 99.5 2.3E-15 7.8E-20 158.2 1.2 75 1075-1149 104-193 (235)
121 2qnr_A Septin-2, protein NEDD5 99.5 7.8E-16 2.7E-20 172.5 -3.8 162 902-1135 3-169 (301)
122 2cvh_A DNA repair and recombin 99.5 5.1E-14 1.7E-18 147.4 8.9 70 1079-1148 91-185 (220)
123 1nlf_A Regulatory protein REPA 99.4 1.4E-13 4.9E-18 151.4 10.6 150 924-1136 27-184 (279)
124 3thx_B DNA mismatch repair pro 99.4 5.8E-14 2E-18 177.7 4.1 69 1073-1142 734-805 (918)
125 1n0w_A DNA repair protein RAD5 99.4 2.1E-13 7.2E-18 144.9 6.8 59 924-985 21-87 (243)
126 3auy_A DNA double-strand break 99.4 7E-13 2.4E-17 152.4 10.6 74 1073-1146 279-359 (371)
127 1sxj_E Activator 1 40 kDa subu 99.4 2.8E-13 9.7E-18 152.5 7.1 137 933-1135 39-176 (354)
128 2bdt_A BH3686; alpha-beta prot 99.4 5.5E-16 1.9E-20 160.1 -15.9 170 930-1160 2-183 (189)
129 1wb9_A DNA mismatch repair pro 99.3 1.6E-13 5.6E-18 171.9 2.6 79 1074-1153 669-750 (800)
130 2qag_B Septin-6, protein NEDD5 99.3 4.7E-13 1.6E-17 156.6 5.0 186 900-1131 19-217 (427)
131 2qm8_A GTPase/ATPase; G protei 99.3 1.2E-13 4E-18 157.3 -2.9 187 900-1121 32-259 (337)
132 2oap_1 GSPE-2, type II secreti 99.3 1.9E-14 6.4E-19 172.4 -11.1 187 913-1140 249-458 (511)
133 3e70_C DPA, signal recognition 99.3 3.1E-12 1E-16 145.4 7.3 166 926-1151 125-307 (328)
134 2yhs_A FTSY, cell division pro 99.3 5.6E-12 1.9E-16 149.6 8.4 81 915-1001 284-371 (503)
135 2rcn_A Probable GTPase ENGC; Y 99.2 8.2E-12 2.8E-16 143.3 8.2 112 930-1090 215-329 (358)
136 2bbw_A Adenylate kinase 4, AK4 99.2 9.9E-14 3.4E-18 149.8 -7.3 178 930-1147 27-218 (246)
137 3lda_A DNA repair protein RAD5 99.2 1.8E-11 6.3E-16 142.5 6.1 146 924-1149 175-364 (400)
138 1cke_A CK, MSSA, protein (cyti 99.1 3.9E-13 1.3E-17 142.0 -8.0 126 932-1103 7-151 (227)
139 1p9r_A General secretion pathw 99.1 1.3E-12 4.5E-17 152.9 -4.7 42 928-969 165-206 (418)
140 2yv5_A YJEQ protein; hydrolase 99.0 2.6E-11 8.8E-16 136.0 0.8 126 923-1087 161-300 (302)
141 1htw_A HI0065; nucleotide-bind 99.0 1.5E-11 5.2E-16 125.7 -1.9 89 900-1001 10-99 (158)
142 3ec2_A DNA replication protein 99.0 3.3E-10 1.1E-14 116.1 7.5 45 1090-1134 98-144 (180)
143 3lnc_A Guanylate kinase, GMP k 99.0 9.8E-13 3.4E-17 140.5 -12.5 36 913-954 16-52 (231)
144 2kjq_A DNAA-related protein; s 99.0 3.3E-10 1.1E-14 114.4 5.7 43 1089-1132 80-124 (149)
145 3a00_A Guanylate kinase, GMP k 98.9 7.4E-11 2.5E-15 122.2 -1.0 146 930-1100 1-169 (186)
146 1sq5_A Pantothenate kinase; P- 98.9 2.9E-11 1E-15 135.6 -5.3 95 893-1000 35-151 (308)
147 1u0l_A Probable GTPase ENGC; p 98.9 5E-10 1.7E-14 125.3 2.9 65 922-989 164-231 (301)
148 4e22_A Cytidylate kinase; P-lo 98.9 8.3E-11 2.9E-15 128.1 -3.4 70 930-999 27-114 (252)
149 2x8a_A Nuclear valosin-contain 98.8 1.1E-11 3.8E-16 137.0 -11.6 144 912-1118 34-191 (274)
150 3tr0_A Guanylate kinase, GMP k 98.8 9.2E-10 3.2E-14 114.2 3.3 64 923-993 3-66 (205)
151 2px0_A Flagellar biosynthesis 98.8 2.7E-09 9.2E-14 119.5 7.2 136 930-1152 105-246 (296)
152 1udx_A The GTP-binding protein 98.8 9.3E-10 3.2E-14 128.8 2.6 159 913-1131 146-306 (416)
153 1ls1_A Signal recognition part 98.8 2.4E-09 8.3E-14 119.7 5.8 140 900-1130 79-219 (295)
154 3ney_A 55 kDa erythrocyte memb 98.8 1E-09 3.5E-14 116.3 1.4 68 930-1003 19-99 (197)
155 1vma_A Cell division protein F 98.7 1.4E-08 4.9E-13 114.2 8.4 40 930-969 104-143 (306)
156 1oix_A RAS-related protein RAB 98.7 8.7E-10 3E-14 114.0 -1.4 37 1082-1120 153-189 (191)
157 2ius_A DNA translocase FTSK; n 98.7 3.8E-09 1.3E-13 126.4 2.0 164 922-1134 162-343 (512)
158 1in4_A RUVB, holliday junction 98.7 2.2E-10 7.5E-15 129.7 -9.1 84 912-999 32-123 (334)
159 1kgd_A CASK, peripheral plasma 98.6 1.4E-09 4.8E-14 112.1 -2.8 78 930-1014 5-93 (180)
160 1t9h_A YLOQ, probable GTPase E 98.6 2E-08 7E-13 113.1 3.5 72 923-999 169-248 (307)
161 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 3.2E-10 1.1E-14 131.7 -11.4 164 930-1156 20-208 (392)
162 3euj_A Chromosome partition pr 98.5 1.4E-08 4.8E-13 120.8 1.9 55 912-973 18-72 (483)
163 2qt1_A Nicotinamide riboside k 98.5 1.4E-08 4.6E-13 106.3 1.1 52 925-1002 16-67 (207)
164 2dr3_A UPF0273 protein PH0284; 98.5 2.3E-08 7.9E-13 106.1 2.2 68 1080-1147 114-196 (247)
165 3k1j_A LON protease, ATP-depen 98.5 9.3E-09 3.2E-13 125.5 -1.9 171 912-1119 48-227 (604)
166 2dy1_A Elongation factor G; tr 98.5 3E-08 1E-12 122.4 2.1 68 930-998 9-78 (665)
167 1iy2_A ATP-dependent metallopr 98.5 3E-10 1E-14 124.7 -14.1 88 900-998 52-141 (278)
168 3tau_A Guanylate kinase, GMP k 98.5 1.6E-08 5.5E-13 106.6 -0.4 70 930-1003 8-88 (208)
169 2f9l_A RAB11B, member RAS onco 98.5 2.9E-08 9.9E-13 102.7 1.3 36 1083-1120 130-165 (199)
170 1qhl_A Protein (cell division 98.4 2.4E-08 8.2E-13 108.0 -1.8 55 932-986 29-91 (227)
171 2zr9_A Protein RECA, recombina 98.4 6.1E-07 2.1E-11 102.7 8.8 75 1081-1155 126-237 (349)
172 1ixz_A ATP-dependent metallopr 98.3 3.4E-09 1.2E-13 114.3 -10.6 88 900-998 28-117 (254)
173 2qtf_A Protein HFLX, GTP-bindi 98.3 8.6E-07 3E-11 102.0 7.4 155 933-1121 182-352 (364)
174 2r6a_A DNAB helicase, replicat 98.3 2E-06 6.7E-11 101.5 10.4 75 1074-1150 295-401 (454)
175 3cr8_A Sulfate adenylyltranfer 98.2 2.1E-07 7.2E-12 112.5 -0.4 60 927-986 366-437 (552)
176 2j41_A Guanylate kinase; GMP, 98.2 2.5E-07 8.5E-12 95.8 -0.1 59 924-988 3-61 (207)
177 4eun_A Thermoresistant glucoki 98.2 2E-07 6.9E-12 97.3 -0.9 67 927-998 26-93 (200)
178 3t34_A Dynamin-related protein 98.1 3.7E-06 1.3E-10 95.9 8.3 47 912-967 25-73 (360)
179 2e87_A Hypothetical protein PH 98.1 7.2E-06 2.5E-10 93.6 10.5 60 1074-1134 231-293 (357)
180 3uie_A Adenylyl-sulfate kinase 98.1 2.3E-07 8E-12 96.8 -2.5 42 928-970 23-66 (200)
181 1svm_A Large T antigen; AAA+ f 98.0 2.8E-08 9.5E-13 115.0 -11.0 143 912-1103 157-312 (377)
182 1jjv_A Dephospho-COA kinase; P 98.0 1.7E-06 6E-11 90.1 2.9 69 1075-1146 60-131 (206)
183 2ce7_A Cell division protein F 98.0 6.3E-06 2.1E-10 98.1 7.5 69 1077-1145 93-183 (476)
184 1uf9_A TT1252 protein; P-loop, 98.0 6.3E-07 2.1E-11 92.5 -1.7 32 932-968 10-41 (203)
185 2vp4_A Deoxynucleoside kinase; 97.9 3.8E-07 1.3E-11 97.6 -3.9 62 926-991 16-87 (230)
186 2xau_A PRE-mRNA-splicing facto 97.9 4.1E-06 1.4E-10 105.2 4.8 65 1073-1137 189-256 (773)
187 2eyu_A Twitching motility prot 97.9 3.3E-06 1.1E-10 92.9 2.7 59 1082-1146 88-146 (261)
188 3b5x_A Lipid A export ATP-bind 97.9 0.0007 2.4E-08 82.3 22.8 119 371-517 11-130 (582)
189 3kta_A Chromosome segregation 97.8 2.5E-06 8.5E-11 87.0 0.5 63 922-988 22-90 (182)
190 1fnn_A CDC6P, cell division co 97.8 3.7E-05 1.3E-09 86.8 9.5 45 1091-1136 124-172 (389)
191 1zu4_A FTSY; GTPase, signal re 97.8 7.4E-06 2.5E-10 92.7 3.6 75 922-999 100-185 (320)
192 2ffh_A Protein (FFH); SRP54, s 97.7 5E-05 1.7E-09 89.2 8.7 61 900-971 79-139 (425)
193 3hr8_A Protein RECA; alpha and 97.7 9.1E-05 3.1E-09 85.1 10.6 59 924-988 58-117 (356)
194 2dhr_A FTSH; AAA+ protein, hex 97.7 1.3E-06 4.5E-11 104.4 -5.4 66 912-987 54-119 (499)
195 3nwj_A ATSK2; P loop, shikimat 97.7 6.6E-06 2.3E-10 90.1 0.4 51 896-954 18-72 (250)
196 3lxx_A GTPase IMAP family memb 97.7 8.7E-05 3E-09 79.2 8.7 27 933-959 32-58 (239)
197 2z43_A DNA repair and recombin 97.6 1.8E-05 6E-10 89.3 2.8 55 1079-1133 187-258 (324)
198 1rz3_A Hypothetical protein rb 97.6 1.4E-05 4.8E-10 83.6 1.8 46 929-974 21-66 (201)
199 3qf4_A ABC transporter, ATP-bi 97.6 0.0013 4.4E-08 80.1 19.0 113 374-514 12-125 (587)
200 3kl4_A SRP54, signal recogniti 97.6 7.2E-05 2.5E-09 88.0 7.3 38 931-968 98-135 (433)
201 3b60_A Lipid A export ATP-bind 97.6 0.00069 2.4E-08 82.3 16.0 117 371-515 11-128 (582)
202 4a82_A Cystic fibrosis transme 97.6 0.001 3.6E-08 80.7 17.5 122 373-522 2-131 (578)
203 2pez_A Bifunctional 3'-phospho 97.5 6.8E-06 2.3E-10 83.8 -1.8 42 928-970 3-46 (179)
204 3ice_A Transcription terminati 97.5 4.9E-05 1.7E-09 88.1 4.0 54 893-954 131-198 (422)
205 1knq_A Gluconate kinase; ALFA/ 97.5 3.6E-05 1.2E-09 77.9 2.4 37 930-970 8-44 (175)
206 4a1f_A DNAB helicase, replicat 97.4 0.00056 1.9E-08 78.0 12.2 33 1074-1106 109-141 (338)
207 3b9p_A CG5977-PA, isoform A; A 97.4 0.00032 1.1E-08 76.9 9.8 71 1076-1146 97-187 (297)
208 2qby_A CDC6 homolog 1, cell di 97.4 7.3E-05 2.5E-09 83.8 4.7 32 928-959 43-74 (386)
209 1mky_A Probable GTP-binding pr 97.4 7.3E-05 2.5E-09 87.7 4.1 67 933-999 183-262 (439)
210 3vaa_A Shikimate kinase, SK; s 97.4 7.1E-05 2.4E-09 77.9 3.2 39 910-954 11-49 (199)
211 2yl4_A ATP-binding cassette SU 97.3 0.0038 1.3E-07 76.0 17.9 126 373-526 7-136 (595)
212 2z4s_A Chromosomal replication 97.3 0.00029 9.9E-09 82.8 7.2 67 1090-1156 191-263 (440)
213 1v5w_A DMC1, meiotic recombina 97.2 0.00015 5.2E-09 82.4 3.5 25 929-953 121-145 (343)
214 1kag_A SKI, shikimate kinase I 97.2 0.00015 5E-09 73.0 2.7 32 930-965 4-35 (173)
215 3llm_A ATP-dependent RNA helic 97.1 0.00057 1.9E-08 73.0 7.4 51 1076-1128 162-213 (235)
216 3tqc_A Pantothenate kinase; bi 97.1 0.00015 5.1E-09 82.2 2.9 46 932-996 94-141 (321)
217 2jaq_A Deoxyguanosine kinase; 97.1 2.2E-05 7.4E-10 80.8 -4.0 70 932-1001 2-87 (205)
218 2qor_A Guanylate kinase; phosp 97.0 8.4E-05 2.9E-09 77.6 -0.2 28 925-955 10-37 (204)
219 1ega_A Protein (GTP-binding pr 97.0 0.0005 1.7E-08 76.7 6.0 22 932-953 10-31 (301)
220 1sxj_C Activator 1 40 kDa subu 97.0 0.00015 5E-09 81.7 1.4 38 922-960 39-76 (340)
221 1m7g_A Adenylylsulfate kinase; 97.0 0.00011 3.7E-09 77.2 -0.1 39 930-968 25-65 (211)
222 1l8q_A Chromosomal replication 97.0 0.00059 2E-08 76.1 5.9 44 1090-1133 96-141 (324)
223 4ag6_A VIRB4 ATPase, type IV s 97.0 0.0076 2.6E-07 69.2 15.1 58 1091-1148 261-335 (392)
224 2gj8_A MNME, tRNA modification 97.0 0.00029 1E-08 71.2 2.8 27 928-954 2-28 (172)
225 4dcu_A GTP-binding protein ENG 96.9 0.00073 2.5E-08 79.6 5.9 58 1077-1136 87-144 (456)
226 3r20_A Cytidylate kinase; stru 96.9 5.2E-05 1.8E-09 82.2 -3.6 68 932-999 11-96 (233)
227 1ypw_A Transitional endoplasmi 96.9 0.0012 4.1E-08 83.4 7.9 31 923-956 234-264 (806)
228 3lxw_A GTPase IMAP family memb 96.8 0.0014 4.9E-08 70.8 7.0 59 1076-1135 86-151 (247)
229 2www_A Methylmalonic aciduria 96.8 0.00031 1.1E-08 80.2 1.4 40 932-971 76-115 (349)
230 4fcw_A Chaperone protein CLPB; 96.8 0.0019 6.5E-08 70.9 7.5 29 933-961 50-78 (311)
231 1f6b_A SAR1; gtpases, N-termin 96.7 0.00033 1.1E-08 72.4 1.2 58 905-969 7-72 (198)
232 1njg_A DNA polymerase III subu 96.7 0.00057 1.9E-08 70.5 2.8 45 1091-1136 125-169 (250)
233 3m6a_A ATP-dependent protease 96.7 0.00043 1.5E-08 83.5 1.7 59 926-987 107-165 (543)
234 2w58_A DNAI, primosome compone 96.7 0.0011 3.9E-08 68.3 4.7 25 933-957 57-81 (202)
235 1lv7_A FTSH; alpha/beta domain 96.7 0.0056 1.9E-07 65.8 10.3 34 933-968 48-81 (257)
236 3bh0_A DNAB-like replicative h 96.6 0.0017 5.8E-08 72.9 5.8 25 928-952 66-90 (315)
237 3h4m_A Proteasome-activating n 96.6 0.0022 7.7E-08 69.6 6.2 22 933-954 54-75 (285)
238 4eaq_A DTMP kinase, thymidylat 96.5 0.00081 2.8E-08 72.2 2.0 36 928-964 24-59 (229)
239 2wji_A Ferrous iron transport 96.4 0.0015 5E-08 65.2 3.6 23 932-954 5-27 (165)
240 2yvu_A Probable adenylyl-sulfa 96.4 0.00051 1.7E-08 70.3 0.2 37 930-966 13-50 (186)
241 3t61_A Gluconokinase; PSI-biol 96.4 0.00088 3E-08 69.4 1.5 32 932-967 20-51 (202)
242 2wjg_A FEOB, ferrous iron tran 96.4 0.0011 3.9E-08 66.7 2.2 22 932-953 9-30 (188)
243 1sxj_D Activator 1 41 kDa subu 96.3 0.00093 3.2E-08 74.5 1.6 43 1092-1135 133-175 (353)
244 3n70_A Transport activator; si 96.3 0.013 4.5E-07 57.8 9.7 25 933-957 27-51 (145)
245 2p67_A LAO/AO transport system 96.3 0.00065 2.2E-08 77.1 0.3 52 913-970 45-96 (341)
246 2p5t_B PEZT; postsegregational 96.3 0.0013 4.6E-08 71.1 2.6 40 928-969 30-69 (253)
247 3bos_A Putative DNA replicatio 96.3 0.0027 9.2E-08 66.2 4.6 24 932-955 54-77 (242)
248 3uk6_A RUVB-like 2; hexameric 96.3 0.0077 2.6E-07 67.8 8.6 36 932-967 72-107 (368)
249 3cf0_A Transitional endoplasmi 96.3 0.0088 3E-07 66.3 8.9 29 924-955 46-74 (301)
250 1u94_A RECA protein, recombina 96.1 0.012 4E-07 67.6 9.3 71 1081-1151 128-235 (356)
251 1np6_A Molybdopterin-guanine d 96.1 0.0017 5.9E-08 67.2 2.2 36 932-967 8-46 (174)
252 1lw7_A Transcriptional regulat 96.1 6.7E-05 2.3E-09 85.8 -9.6 84 1074-1159 258-353 (365)
253 2v1u_A Cell division control p 96.0 0.0038 1.3E-07 69.9 4.5 24 932-955 46-69 (387)
254 2zej_A Dardarin, leucine-rich 96.0 0.0031 1.1E-07 63.9 3.4 26 932-957 4-29 (184)
255 1m2o_B GTP-binding protein SAR 96.0 0.0025 8.6E-08 65.2 2.6 36 933-968 26-69 (190)
256 2if2_A Dephospho-COA kinase; a 96.0 0.0032 1.1E-07 65.0 3.4 21 932-952 3-23 (204)
257 3ihw_A Centg3; RAS, centaurin, 95.9 0.0058 2E-07 62.3 5.0 35 933-967 23-66 (184)
258 2ewv_A Twitching motility prot 95.8 0.0032 1.1E-07 72.5 2.8 56 1082-1143 199-254 (372)
259 1qhx_A CPT, protein (chloramph 95.8 0.0041 1.4E-07 62.6 3.1 24 932-955 5-28 (178)
260 3syl_A Protein CBBX; photosynt 95.8 0.066 2.2E-06 58.6 13.0 22 933-954 70-91 (309)
261 1gtv_A TMK, thymidylate kinase 95.7 0.0014 4.7E-08 68.0 -0.7 26 932-957 2-27 (214)
262 2chg_A Replication factor C sm 95.7 0.018 6.3E-07 58.5 7.7 43 1091-1134 101-143 (226)
263 2ohf_A Protein OLA1, GTP-bindi 95.7 0.0056 1.9E-07 71.3 4.2 36 932-967 24-70 (396)
264 3kb2_A SPBC2 prophage-derived 95.7 0.0045 1.6E-07 61.5 3.0 23 932-954 3-25 (173)
265 1y63_A LMAJ004144AAA protein; 95.7 0.0053 1.8E-07 62.9 3.4 29 922-953 5-33 (184)
266 1j8m_F SRP54, signal recogniti 95.6 0.0021 7.2E-08 71.9 -0.0 41 930-970 98-138 (297)
267 1fzq_A ADP-ribosylation factor 95.6 0.0038 1.3E-07 63.2 1.9 27 933-959 19-49 (181)
268 3cm0_A Adenylate kinase; ATP-b 95.5 0.0058 2E-07 62.0 3.0 25 930-954 4-28 (186)
269 3dm5_A SRP54, signal recogniti 95.5 0.033 1.1E-06 65.8 9.6 32 932-963 102-133 (443)
270 3lw7_A Adenylate kinase relate 95.5 0.0065 2.2E-07 60.0 3.1 19 932-950 3-21 (179)
271 1gvn_B Zeta; postsegregational 95.5 0.0076 2.6E-07 66.8 3.9 33 931-965 34-66 (287)
272 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.06 2E-06 57.3 10.5 22 933-954 42-63 (262)
273 1ofh_A ATP-dependent HSL prote 95.4 0.036 1.2E-06 60.3 9.0 23 933-955 53-75 (310)
274 3d8b_A Fidgetin-like protein 1 95.3 0.024 8.3E-07 64.4 7.7 22 933-954 120-141 (357)
275 2b8t_A Thymidine kinase; deoxy 95.3 0.02 7E-07 61.5 6.6 51 1092-1146 89-150 (223)
276 3t15_A Ribulose bisphosphate c 95.3 0.016 5.6E-07 64.1 5.9 22 933-954 39-60 (293)
277 1kht_A Adenylate kinase; phosp 95.2 0.0089 3.1E-07 60.4 3.3 24 932-955 5-28 (192)
278 3trf_A Shikimate kinase, SK; a 95.1 0.0091 3.1E-07 60.6 3.1 23 932-954 7-29 (185)
279 2orw_A Thymidine kinase; TMTK, 95.1 0.017 5.9E-07 59.9 5.0 52 1092-1147 76-138 (184)
280 1ex7_A Guanylate kinase; subst 95.1 0.0086 3E-07 62.7 2.7 63 933-1001 4-79 (186)
281 2lkc_A Translation initiation 95.0 0.019 6.5E-07 56.9 5.0 21 932-952 10-30 (178)
282 1vht_A Dephospho-COA kinase; s 95.0 0.012 4.2E-07 61.5 3.7 29 932-965 6-34 (218)
283 2v54_A DTMP kinase, thymidylat 95.0 0.012 4E-07 60.5 3.4 24 931-954 5-28 (204)
284 2fn4_A P23, RAS-related protei 94.9 0.018 6.3E-07 56.9 4.6 21 933-953 12-32 (181)
285 1jal_A YCHF protein; nucleotid 94.9 0.016 5.5E-07 66.7 4.7 36 931-966 3-49 (363)
286 1via_A Shikimate kinase; struc 94.9 0.011 3.8E-07 59.7 2.9 23 932-954 6-28 (175)
287 2q6t_A DNAB replication FORK h 94.9 0.018 6E-07 67.6 4.9 26 929-954 199-224 (444)
288 1ly1_A Polynucleotide kinase; 94.9 0.012 4.1E-07 58.9 3.0 21 932-952 4-24 (181)
289 3pfi_A Holliday junction ATP-d 94.8 0.13 4.3E-06 57.3 11.4 23 933-955 58-80 (338)
290 1xjc_A MOBB protein homolog; s 94.7 0.0088 3E-07 61.8 1.6 33 933-965 7-42 (169)
291 3iij_A Coilin-interacting nucl 94.7 0.014 4.8E-07 59.1 3.1 23 932-954 13-35 (180)
292 2rhm_A Putative kinase; P-loop 94.7 0.013 4.6E-07 59.4 3.0 24 931-954 6-29 (193)
293 2qag_A Septin-2, protein NEDD5 94.7 0.013 4.4E-07 67.2 3.1 58 894-966 16-73 (361)
294 1jr3_A DNA polymerase III subu 94.7 0.037 1.3E-06 62.0 6.8 42 1092-1134 119-160 (373)
295 3cbq_A GTP-binding protein REM 94.7 0.012 4.1E-07 60.6 2.5 21 933-953 26-46 (195)
296 2dyk_A GTP-binding protein; GT 94.7 0.022 7.6E-07 55.3 4.3 23 932-954 3-25 (161)
297 2ze6_A Isopentenyl transferase 94.6 0.014 4.8E-07 63.4 3.0 23 932-954 3-25 (253)
298 1nks_A Adenylate kinase; therm 94.6 0.014 4.7E-07 59.0 2.8 24 932-955 3-26 (194)
299 2erx_A GTP-binding protein DI- 94.6 0.027 9.2E-07 55.1 4.8 21 932-952 5-25 (172)
300 1f2t_A RAD50 ABC-ATPase; DNA d 94.6 0.017 5.7E-07 57.9 3.2 19 933-951 26-44 (149)
301 2qp9_X Vacuolar protein sortin 94.6 0.11 3.8E-06 59.1 10.3 22 933-954 87-108 (355)
302 2plr_A DTMP kinase, probable t 94.5 0.016 5.5E-07 59.5 3.1 26 931-956 5-30 (213)
303 2dby_A GTP-binding protein; GD 94.5 0.019 6.5E-07 66.2 3.8 22 932-953 3-24 (368)
304 2qby_B CDC6 homolog 3, cell di 94.5 0.038 1.3E-06 62.2 6.2 23 932-954 47-69 (384)
305 1hqc_A RUVB; extended AAA-ATPa 94.5 0.11 3.7E-06 57.2 9.7 22 933-954 41-62 (324)
306 2wwf_A Thymidilate kinase, put 94.5 0.016 5.5E-07 59.8 2.8 24 931-954 11-34 (212)
307 2c95_A Adenylate kinase 1; tra 94.5 0.017 5.7E-07 58.9 2.9 23 932-954 11-33 (196)
308 2oil_A CATX-8, RAS-related pro 94.4 0.035 1.2E-06 56.2 5.2 21 933-953 28-48 (193)
309 2bwj_A Adenylate kinase 5; pho 94.4 0.017 6E-07 58.8 2.9 23 932-954 14-36 (199)
310 1z2a_A RAS-related protein RAB 94.4 0.019 6.4E-07 56.1 3.0 21 933-953 8-28 (168)
311 1q3t_A Cytidylate kinase; nucl 94.4 0.018 6.2E-07 61.3 3.1 21 933-953 19-39 (236)
312 3fb4_A Adenylate kinase; psych 94.4 0.018 6.1E-07 59.9 3.0 23 932-954 2-24 (216)
313 2ew1_A RAS-related protein RAB 94.3 0.03 1E-06 58.1 4.6 20 933-952 29-48 (201)
314 2z0h_A DTMP kinase, thymidylat 94.3 0.02 6.9E-07 58.3 3.1 24 932-955 2-25 (197)
315 1z0j_A RAB-22, RAS-related pro 94.3 0.028 9.7E-07 54.9 4.1 22 933-954 9-30 (170)
316 1tev_A UMP-CMP kinase; ploop, 94.3 0.021 7.3E-07 57.7 3.2 23 932-954 5-27 (196)
317 3q72_A GTP-binding protein RAD 94.3 0.019 6.6E-07 56.2 2.8 23 932-954 4-26 (166)
318 2iyv_A Shikimate kinase, SK; t 94.2 0.02 6.8E-07 58.1 2.9 23 932-954 4-26 (184)
319 1ksh_A ARF-like protein 2; sma 94.2 0.044 1.5E-06 55.0 5.4 21 933-953 21-41 (186)
320 1kao_A RAP2A; GTP-binding prot 94.2 0.021 7.3E-07 55.4 3.0 20 933-952 6-25 (167)
321 3ake_A Cytidylate kinase; CMP 94.2 0.02 7E-07 58.8 3.0 23 932-954 4-26 (208)
322 1e6c_A Shikimate kinase; phosp 94.2 0.022 7.5E-07 56.8 3.1 23 932-954 4-26 (173)
323 3dl0_A Adenylate kinase; phosp 94.2 0.019 6.5E-07 59.9 2.7 23 932-954 2-24 (216)
324 1nn5_A Similar to deoxythymidy 94.1 0.022 7.4E-07 58.9 3.0 24 931-954 10-33 (215)
325 2ce2_X GTPase HRAS; signaling 94.1 0.021 7.1E-07 55.3 2.7 22 932-953 5-26 (166)
326 2nzj_A GTP-binding protein REM 94.1 0.024 8.3E-07 55.8 3.2 22 933-954 7-28 (175)
327 3clv_A RAB5 protein, putative; 94.1 0.029 1E-06 56.2 3.9 21 933-953 10-30 (208)
328 1u8z_A RAS-related protein RAL 94.1 0.023 7.9E-07 55.2 3.0 21 933-953 7-27 (168)
329 3q85_A GTP-binding protein REM 94.1 0.025 8.6E-07 55.5 3.2 23 932-954 4-26 (169)
330 2pt5_A Shikimate kinase, SK; a 94.1 0.025 8.5E-07 56.3 3.2 23 932-954 2-24 (168)
331 2pbr_A DTMP kinase, thymidylat 94.0 0.025 8.4E-07 57.3 3.1 23 932-954 2-24 (195)
332 1c1y_A RAS-related protein RAP 94.0 0.024 8.3E-07 55.3 3.0 20 933-952 6-25 (167)
333 1zuh_A Shikimate kinase; alpha 94.0 0.026 8.9E-07 56.4 3.2 24 931-954 8-31 (168)
334 2cdn_A Adenylate kinase; phosp 94.0 0.028 9.5E-07 58.0 3.5 23 932-954 22-44 (201)
335 1xwi_A SKD1 protein; VPS4B, AA 94.0 0.19 6.4E-06 56.4 10.5 22 933-954 48-69 (322)
336 2bcg_Y Protein YP2, GTP-bindin 94.0 0.044 1.5E-06 56.2 4.9 21 933-953 11-31 (206)
337 3t5d_A Septin-7; GTP-binding p 94.0 0.023 7.7E-07 62.1 2.9 22 933-954 11-32 (274)
338 1ek0_A Protein (GTP-binding pr 94.0 0.025 8.6E-07 55.2 3.0 21 933-953 6-26 (170)
339 1g16_A RAS-related protein SEC 94.0 0.024 8E-07 55.5 2.7 21 933-953 6-26 (170)
340 2ged_A SR-beta, signal recogni 94.0 0.025 8.6E-07 57.1 3.0 22 933-954 51-72 (193)
341 1z08_A RAS-related protein RAB 93.9 0.026 8.9E-07 55.3 3.0 21 933-953 9-29 (170)
342 1ky3_A GTP-binding protein YPT 93.9 0.027 9.1E-07 55.8 3.0 21 933-953 11-31 (182)
343 3tw8_B RAS-related protein RAB 93.9 0.028 9.5E-07 55.6 3.1 21 933-953 12-32 (181)
344 1wms_A RAB-9, RAB9, RAS-relate 93.8 0.028 9.5E-07 55.6 3.0 21 933-953 10-30 (177)
345 3iby_A Ferrous iron transport 93.8 0.029 9.8E-07 61.1 3.3 23 932-954 3-25 (256)
346 3t1o_A Gliding protein MGLA; G 93.8 0.028 9.7E-07 56.4 3.0 24 933-956 17-40 (198)
347 1r2q_A RAS-related protein RAB 93.7 0.029 1E-06 54.7 3.0 20 933-952 9-28 (170)
348 1qf9_A UMP/CMP kinase, protein 93.7 0.029 1E-06 56.6 3.0 23 932-954 8-30 (194)
349 1svi_A GTP-binding protein YSX 93.7 0.027 9.3E-07 56.9 2.7 21 933-953 26-46 (195)
350 3pqc_A Probable GTP-binding pr 93.7 0.028 9.6E-07 56.4 2.7 22 933-954 26-47 (195)
351 1uj2_A Uridine-cytidine kinase 93.7 0.029 9.7E-07 60.5 3.0 22 933-954 25-46 (252)
352 1sxj_B Activator 1 37 kDa subu 93.6 0.1 3.4E-06 57.1 7.3 42 1092-1134 107-148 (323)
353 4dsu_A GTPase KRAS, isoform 2B 93.6 0.032 1.1E-06 55.7 3.0 22 932-953 6-27 (189)
354 1ukz_A Uridylate kinase; trans 93.6 0.028 9.6E-07 57.9 2.7 23 932-954 17-39 (203)
355 1ko7_A HPR kinase/phosphatase; 93.6 0.024 8.3E-07 64.0 2.3 27 923-952 140-166 (314)
356 2grj_A Dephospho-COA kinase; T 93.6 0.032 1.1E-06 58.4 3.1 21 933-953 15-35 (192)
357 1xp8_A RECA protein, recombina 93.6 0.13 4.4E-06 59.3 8.3 69 1081-1149 139-244 (366)
358 2zan_A Vacuolar protein sortin 93.6 0.18 6.3E-06 59.1 9.8 22 933-954 170-191 (444)
359 3bc1_A RAS-related protein RAB 93.6 0.032 1.1E-06 55.7 3.0 20 933-952 14-33 (195)
360 2hxs_A RAB-26, RAS-related pro 93.5 0.038 1.3E-06 54.7 3.3 21 933-953 9-29 (178)
361 2cxx_A Probable GTP-binding pr 93.5 0.032 1.1E-06 55.8 2.8 22 932-953 3-24 (190)
362 1r8s_A ADP-ribosylation factor 93.5 0.035 1.2E-06 54.2 3.0 21 932-952 2-22 (164)
363 2vli_A Antibiotic resistance p 93.4 0.027 9.1E-07 56.8 2.1 24 931-954 6-29 (183)
364 1aky_A Adenylate kinase; ATP:A 93.4 0.038 1.3E-06 57.9 3.4 23 932-954 6-28 (220)
365 3pxi_A Negative regulator of g 93.4 0.18 6.2E-06 62.9 10.0 22 933-954 524-545 (758)
366 3k53_A Ferrous iron transport 93.4 0.033 1.1E-06 60.6 2.9 23 933-955 6-28 (271)
367 1zak_A Adenylate kinase; ATP:A 93.4 0.034 1.2E-06 58.4 2.9 24 932-955 7-30 (222)
368 1m7b_A RND3/RHOE small GTP-bin 93.4 0.043 1.5E-06 55.3 3.6 21 933-953 10-30 (184)
369 2y8e_A RAB-protein 6, GH09086P 93.4 0.033 1.1E-06 54.9 2.7 20 933-952 17-36 (179)
370 1upt_A ARL1, ADP-ribosylation 93.4 0.036 1.2E-06 54.3 3.0 20 933-952 10-29 (171)
371 1zd8_A GTP:AMP phosphotransfer 93.4 0.036 1.2E-06 58.5 3.1 23 932-954 9-31 (227)
372 2r8r_A Sensor protein; KDPD, P 93.3 0.034 1.2E-06 60.2 2.8 41 1091-1131 83-125 (228)
373 2g6b_A RAS-related protein RAB 93.3 0.037 1.3E-06 54.8 3.0 21 933-953 13-33 (180)
374 1z0f_A RAB14, member RAS oncog 93.3 0.038 1.3E-06 54.5 3.0 21 933-953 18-38 (179)
375 3hu3_A Transitional endoplasmi 93.3 0.12 4E-06 61.7 7.6 22 933-954 241-262 (489)
376 3t5g_A GTP-binding protein RHE 93.3 0.062 2.1E-06 53.5 4.5 20 932-951 8-27 (181)
377 2efe_B Small GTP-binding prote 93.2 0.04 1.4E-06 54.7 3.0 21 933-953 15-35 (181)
378 2a9k_A RAS-related protein RAL 93.2 0.04 1.4E-06 54.7 3.0 20 933-952 21-40 (187)
379 1a7j_A Phosphoribulokinase; tr 93.1 0.022 7.7E-07 63.3 1.1 23 932-954 7-29 (290)
380 4bas_A ADP-ribosylation factor 93.1 0.057 2E-06 54.5 4.0 20 933-952 20-39 (199)
381 3con_A GTPase NRAS; structural 93.1 0.041 1.4E-06 55.4 3.0 21 933-953 24-44 (190)
382 2f6r_A COA synthase, bifunctio 93.1 0.04 1.4E-06 60.8 3.0 21 932-952 77-97 (281)
383 1iqp_A RFCS; clamp loader, ext 93.0 0.18 6.1E-06 55.1 8.1 42 1092-1134 110-151 (327)
384 2bme_A RAB4A, RAS-related prot 93.0 0.042 1.4E-06 54.9 2.7 21 933-953 13-33 (186)
385 3kkq_A RAS-related protein M-R 92.9 0.047 1.6E-06 54.5 3.0 20 933-952 21-40 (183)
386 2bov_A RAla, RAS-related prote 92.9 0.046 1.6E-06 55.5 3.0 21 933-953 17-37 (206)
387 1vg8_A RAS-related protein RAB 92.9 0.047 1.6E-06 55.6 3.0 21 933-953 11-31 (207)
388 4dhe_A Probable GTP-binding pr 92.9 0.03 1E-06 58.0 1.6 22 933-954 32-53 (223)
389 2xtp_A GTPase IMAP family memb 92.9 0.046 1.6E-06 58.7 3.0 21 933-953 25-45 (260)
390 2gf9_A RAS-related protein RAB 92.9 0.048 1.6E-06 55.1 3.0 21 933-953 25-45 (189)
391 3qks_A DNA double-strand break 92.8 0.05 1.7E-06 57.1 3.2 19 933-951 26-44 (203)
392 1moz_A ARL1, ADP-ribosylation 92.8 0.034 1.2E-06 55.4 1.8 20 933-952 21-40 (183)
393 2gf0_A GTP-binding protein DI- 92.8 0.046 1.6E-06 55.2 2.8 20 933-952 11-30 (199)
394 1z06_A RAS-related protein RAB 92.8 0.05 1.7E-06 54.9 3.0 20 933-952 23-42 (189)
395 1mh1_A RAC1; GTP-binding, GTPa 92.7 0.051 1.7E-06 54.0 3.0 20 933-952 8-27 (186)
396 3tlx_A Adenylate kinase 2; str 92.7 0.052 1.8E-06 58.4 3.2 22 933-954 32-53 (243)
397 3tkl_A RAS-related protein RAB 92.7 0.051 1.8E-06 54.7 3.0 21 933-953 19-39 (196)
398 2fg5_A RAB-22B, RAS-related pr 92.7 0.049 1.7E-06 55.4 2.8 21 933-953 26-46 (192)
399 1zbd_A Rabphilin-3A; G protein 92.7 0.055 1.9E-06 55.2 3.2 21 933-953 11-31 (203)
400 3u61_B DNA polymerase accessor 92.7 0.15 5.1E-06 56.4 6.9 43 1092-1135 105-148 (324)
401 3bwd_D RAC-like GTP-binding pr 92.7 0.053 1.8E-06 53.8 3.0 20 933-952 11-30 (182)
402 1wf3_A GTP-binding protein; GT 92.6 0.052 1.8E-06 60.5 3.2 22 932-953 9-30 (301)
403 1e4v_A Adenylate kinase; trans 92.6 0.051 1.7E-06 56.8 2.9 23 932-954 2-24 (214)
404 1nrj_B SR-beta, signal recogni 92.6 0.052 1.8E-06 56.1 3.0 22 933-954 15-36 (218)
405 2il1_A RAB12; G-protein, GDP, 92.6 0.055 1.9E-06 55.1 3.0 21 933-953 29-49 (192)
406 2qmh_A HPR kinase/phosphorylas 92.6 0.053 1.8E-06 57.7 3.0 30 922-954 29-58 (205)
407 3b1v_A Ferrous iron uptake tra 92.6 0.056 1.9E-06 59.5 3.2 23 932-954 5-27 (272)
408 2vhj_A Ntpase P4, P4; non- hyd 92.5 0.085 2.9E-06 60.0 4.7 22 931-952 124-145 (331)
409 2g3y_A GTP-binding protein GEM 92.5 0.073 2.5E-06 56.2 4.0 21 933-953 40-60 (211)
410 3oes_A GTPase rhebl1; small GT 92.5 0.052 1.8E-06 55.6 2.7 21 933-953 27-47 (201)
411 2qu8_A Putative nucleolar GTP- 92.5 0.058 2E-06 56.6 3.2 21 933-953 32-52 (228)
412 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.06 2.1E-06 58.4 3.2 22 932-953 6-27 (260)
413 3llu_A RAS-related GTP-binding 92.4 0.06 2E-06 55.0 3.0 24 933-956 23-46 (196)
414 2a5j_A RAS-related protein RAB 92.4 0.06 2.1E-06 54.5 3.0 21 933-953 24-44 (191)
415 3dz8_A RAS-related protein RAB 92.4 0.056 1.9E-06 54.8 2.7 21 933-953 26-46 (191)
416 1gwn_A RHO-related GTP-binding 92.4 0.083 2.8E-06 54.9 4.1 21 933-953 31-51 (205)
417 2xb4_A Adenylate kinase; ATP-b 92.3 0.064 2.2E-06 56.7 3.2 23 932-954 2-24 (223)
418 3iev_A GTP-binding protein ERA 92.3 0.061 2.1E-06 60.0 3.2 22 932-953 12-33 (308)
419 3cmw_A Protein RECA, recombina 92.3 0.33 1.1E-05 65.7 10.5 33 924-959 729-761 (1706)
420 1x3s_A RAS-related protein RAB 92.3 0.062 2.1E-06 53.9 3.0 21 933-953 18-38 (195)
421 3cph_A RAS-related protein SEC 92.3 0.062 2.1E-06 55.0 3.0 21 933-953 23-43 (213)
422 3d3q_A TRNA delta(2)-isopenten 92.3 0.053 1.8E-06 61.9 2.6 24 932-955 9-32 (340)
423 1zj6_A ADP-ribosylation factor 92.3 0.064 2.2E-06 54.1 3.0 20 933-952 19-38 (187)
424 2h57_A ADP-ribosylation factor 92.2 0.053 1.8E-06 54.8 2.4 22 933-954 24-45 (190)
425 2o52_A RAS-related protein RAB 92.2 0.064 2.2E-06 55.1 3.0 20 933-952 28-47 (200)
426 2cjw_A GTP-binding protein GEM 92.2 0.064 2.2E-06 54.9 3.0 21 932-952 8-28 (192)
427 3reg_A RHO-like small GTPase; 92.2 0.066 2.2E-06 54.3 3.0 21 933-953 26-46 (194)
428 2fv8_A H6, RHO-related GTP-bin 92.2 0.061 2.1E-06 55.4 2.8 21 933-953 28-48 (207)
429 2h17_A ADP-ribosylation factor 92.2 0.058 2E-06 54.2 2.5 21 933-953 24-44 (181)
430 1jbk_A CLPB protein; beta barr 92.2 0.071 2.4E-06 52.8 3.1 23 933-955 46-68 (195)
431 2atv_A RERG, RAS-like estrogen 92.1 0.068 2.3E-06 54.4 3.0 21 933-953 31-51 (196)
432 1a5t_A Delta prime, HOLB; zinc 92.1 0.41 1.4E-05 53.8 9.6 42 1092-1134 108-149 (334)
433 2p5s_A RAS and EF-hand domain 92.1 0.067 2.3E-06 54.6 3.0 21 933-953 31-51 (199)
434 1zd9_A ADP-ribosylation factor 92.1 0.068 2.3E-06 54.1 3.0 20 933-952 25-44 (188)
435 2h92_A Cytidylate kinase; ross 92.0 0.06 2.1E-06 56.0 2.6 23 932-954 5-27 (219)
436 3a8t_A Adenylate isopentenyltr 92.0 0.078 2.7E-06 60.5 3.6 24 932-955 42-65 (339)
437 2iwr_A Centaurin gamma 1; ANK 92.0 0.057 1.9E-06 53.6 2.3 20 933-952 10-29 (178)
438 1jwy_B Dynamin A GTPase domain 92.0 0.065 2.2E-06 59.0 2.9 22 933-954 27-48 (315)
439 3be4_A Adenylate kinase; malar 92.0 0.07 2.4E-06 56.0 3.1 24 931-954 6-29 (217)
440 2f7s_A C25KG, RAS-related prot 92.0 0.075 2.6E-06 54.8 3.2 21 933-953 28-48 (217)
441 3zvl_A Bifunctional polynucleo 92.0 0.066 2.3E-06 62.4 3.1 31 931-965 259-289 (416)
442 2q3h_A RAS homolog gene family 92.0 0.076 2.6E-06 54.0 3.2 21 933-953 23-43 (201)
443 3bgw_A DNAB-like replicative h 92.0 0.21 7.1E-06 58.9 7.3 25 928-952 195-219 (444)
444 1h65_A Chloroplast outer envel 92.0 0.068 2.3E-06 58.1 3.0 22 933-954 42-63 (270)
445 2aka_B Dynamin-1; fusion prote 92.0 0.064 2.2E-06 58.4 2.8 22 933-954 29-50 (299)
446 2fu5_C RAS-related protein RAB 91.9 0.051 1.8E-06 54.2 1.7 20 933-952 11-30 (183)
447 3def_A T7I23.11 protein; chlor 91.9 0.072 2.5E-06 57.7 3.0 21 933-953 39-59 (262)
448 2wsm_A Hydrogenase expression/ 91.9 0.07 2.4E-06 55.4 2.8 21 933-953 33-53 (221)
449 2j1l_A RHO-related GTP-binding 91.9 0.075 2.6E-06 55.2 3.0 20 933-952 37-56 (214)
450 1ltq_A Polynucleotide kinase; 91.8 0.076 2.6E-06 58.2 3.2 31 932-965 4-34 (301)
451 2fh5_B SR-beta, signal recogni 91.8 0.075 2.6E-06 54.7 3.0 21 933-953 10-30 (214)
452 3c5c_A RAS-like protein 12; GD 91.8 0.078 2.7E-06 53.8 3.0 20 933-952 24-43 (187)
453 3i8s_A Ferrous iron transport 91.8 0.073 2.5E-06 58.3 3.0 23 932-954 5-27 (274)
454 3tqf_A HPR(Ser) kinase; transf 91.7 0.084 2.9E-06 55.1 3.1 28 922-952 11-38 (181)
455 2gco_A H9, RHO-related GTP-bin 91.7 0.074 2.5E-06 54.5 2.7 21 933-953 28-48 (201)
456 2b6h_A ADP-ribosylation factor 91.5 0.082 2.8E-06 54.0 2.8 21 932-952 31-51 (192)
457 3cnl_A YLQF, putative uncharac 91.5 0.091 3.1E-06 57.5 3.3 30 932-961 101-130 (262)
458 2atx_A Small GTP binding prote 91.5 0.083 2.8E-06 53.4 2.8 21 933-953 21-41 (194)
459 3e1s_A Exodeoxyribonuclease V, 91.4 0.15 5.1E-06 62.0 5.4 25 932-956 206-230 (574)
460 3a1s_A Iron(II) transport prot 91.3 0.095 3.2E-06 57.0 3.2 22 933-954 8-29 (258)
461 1ak2_A Adenylate kinase isoenz 91.3 0.099 3.4E-06 55.5 3.3 23 932-954 18-40 (233)
462 3euj_A Chromosome partition pr 91.3 0.29 1E-05 58.3 7.6 77 1066-1146 371-464 (483)
463 3co5_A Putative two-component 91.3 0.081 2.8E-06 52.0 2.4 23 933-955 30-52 (143)
464 3crm_A TRNA delta(2)-isopenten 91.3 0.089 3.1E-06 59.7 3.0 24 932-955 7-30 (323)
465 3exa_A TRNA delta(2)-isopenten 91.2 0.1 3.5E-06 59.1 3.4 23 932-954 5-27 (322)
466 4djt_A GTP-binding nuclear pro 91.1 0.051 1.8E-06 56.1 0.8 20 933-952 14-33 (218)
467 2x77_A ADP-ribosylation factor 91.1 0.071 2.4E-06 53.7 1.8 20 933-952 25-44 (189)
468 2hf9_A Probable hydrogenase ni 91.0 0.095 3.2E-06 54.5 2.7 21 933-953 41-61 (226)
469 4b4t_L 26S protease subunit RP 90.8 0.42 1.4E-05 56.3 8.2 22 933-954 218-239 (437)
470 2p65_A Hypothetical protein PF 90.8 0.095 3.3E-06 52.0 2.4 24 933-956 46-69 (187)
471 4gzl_A RAS-related C3 botulinu 90.7 0.1 3.6E-06 53.7 2.7 20 933-952 33-52 (204)
472 2yc2_C IFT27, small RAB-relate 90.7 0.056 1.9E-06 54.9 0.6 20 933-952 23-42 (208)
473 1qvr_A CLPB protein; coiled co 90.6 0.18 6.3E-06 63.9 5.4 115 926-1132 584-710 (854)
474 2hup_A RAS-related protein RAB 90.6 0.11 3.8E-06 53.4 2.8 20 933-952 32-51 (201)
475 3cpj_B GTP-binding protein YPT 90.5 0.12 4.2E-06 53.9 3.0 21 933-953 16-36 (223)
476 3ld9_A DTMP kinase, thymidylat 90.4 0.14 4.6E-06 55.1 3.3 28 928-955 19-46 (223)
477 2ga8_A Hypothetical 39.9 kDa p 90.4 0.12 4.1E-06 59.4 3.0 22 933-954 27-48 (359)
478 1p5z_B DCK, deoxycytidine kina 90.2 0.093 3.2E-06 56.7 1.9 25 931-955 25-49 (263)
479 3q3j_B RHO-related GTP-binding 90.2 0.13 4.6E-06 53.5 3.0 21 933-953 30-50 (214)
480 2ocp_A DGK, deoxyguanosine kin 90.0 0.13 4.5E-06 54.7 2.8 25 931-955 3-27 (241)
481 2j0v_A RAC-like GTP-binding pr 90.0 0.13 4.5E-06 52.8 2.7 20 933-952 12-31 (212)
482 1m8p_A Sulfate adenylyltransfe 90.0 0.14 4.8E-06 62.3 3.4 39 926-965 392-433 (573)
483 3geh_A MNME, tRNA modification 90.0 0.15 5.3E-06 60.3 3.6 44 933-976 227-282 (462)
484 4edh_A DTMP kinase, thymidylat 89.9 0.15 5.2E-06 54.1 3.2 27 930-956 6-32 (213)
485 3foz_A TRNA delta(2)-isopenten 89.8 0.13 4.5E-06 58.1 2.7 22 933-954 13-34 (316)
486 1puj_A YLQF, conserved hypothe 89.7 0.17 5.8E-06 56.0 3.4 28 932-959 122-149 (282)
487 2hjg_A GTP-binding protein ENG 89.5 0.27 9.2E-06 57.4 5.2 46 932-977 177-234 (436)
488 3r7w_A Gtpase1, GTP-binding pr 89.5 0.19 6.4E-06 56.0 3.6 23 932-954 5-27 (307)
489 1mky_A Probable GTP-binding pr 89.4 0.24 8.3E-06 57.8 4.7 37 932-968 3-51 (439)
490 1x6v_B Bifunctional 3'-phospho 89.4 0.17 5.9E-06 62.2 3.5 41 929-969 51-92 (630)
491 3lv8_A DTMP kinase, thymidylat 89.3 0.17 5.8E-06 54.8 3.0 25 932-956 29-53 (236)
492 1lnz_A SPO0B-associated GTP-bi 89.2 0.18 6.3E-06 57.4 3.4 21 933-953 161-181 (342)
493 3gee_A MNME, tRNA modification 89.1 0.15 5.3E-06 60.5 2.8 21 933-953 236-256 (476)
494 3v9p_A DTMP kinase, thymidylat 89.1 0.16 5.3E-06 54.8 2.5 26 930-955 25-50 (227)
495 1g8f_A Sulfate adenylyltransfe 89.0 0.16 5.5E-06 61.0 2.8 38 928-965 393-433 (511)
496 4tmk_A Protein (thymidylate ki 88.9 0.19 6.6E-06 53.4 3.1 27 930-956 3-29 (213)
497 3ec1_A YQEH GTPase; atnos1, at 88.9 0.18 6.1E-06 57.9 3.0 22 932-953 164-185 (369)
498 1ypw_A Transitional endoplasmi 88.8 0.027 9.2E-07 71.2 -4.3 44 922-970 506-549 (806)
499 1sky_E F1-ATPase, F1-ATP synth 88.7 0.097 3.3E-06 62.2 0.7 34 929-962 150-183 (473)
500 3th5_A RAS-related C3 botulinu 88.4 0.082 2.8E-06 54.1 0.0 20 933-952 33-52 (204)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.8e-93 Score=928.90 Aligned_cols=607 Identities=23% Similarity=0.324 Sum_probs=502.7
Q ss_pred cccccccceeeeeccCCcccccccceeeeeechhHHHHHHHHHHHHHHhH----HHHHHHHHHHHH-hhhcccc-ccccc
Q psy13234 503 HLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFS----TWYGVIVFTTMA-LYLGKNT-VGERG 576 (1192)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~si~~vl~~~lF~~~~tivDili~ii~~i~af~----~~fglIl~~~~~-lYi~~~~-ig~~G 576 (1192)
+-..++||+-.-=|.-.++.+++.++.|||| ++..|.++++++.+++.. .|++.++|+.+. .+..... .+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~v~~~~Lfry-a~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~ 116 (1321)
T 4f4c_A 38 DNIDSNGEIKITRDAKEEVVNKVSIPQLYRY-TTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNG 116 (1321)
T ss_dssp TTBCSSSCBCCSCC---CCSSCCCHHHHTTT-CCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cccccccccchhhhhhhcccCCCCHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3344667766544555566788999999999 899999999998887665 778778888766 3331111 11111
Q ss_pred cc-cCCCchhhhhhhhhccCCCCch-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 577 LK-LSGGEKQRVAIALNSLVDKPLV-FRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLH 654 (1192)
Q Consensus 577 ~~-lSGGqkqri~~al~s~~~~~l~-~~~~~vli~l~~~ii~~~~~~~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll 654 (1192)
.. ...|... ....+. ....+++.+++ ...+..++.+++..+|..+++++..++|.++|+|++
T Consensus 117 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll 180 (1321)
T 4f4c_A 117 STFLPTGQNY---------TKTDFEHDVMNVVWSYAA-------MTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSIL 180 (1321)
T ss_dssp CBCSSTTCBC---------CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccc---------chHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0001000 000000 00111111111 122345667788899999999999999999999999
Q ss_pred hCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 655 GLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEW 734 (1192)
Q Consensus 655 ~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~ 734 (1192)
++|++||+++++|++++|+++|++.+++.+...+..++..++.++.++ ++++.++|.+++++++++|+++++..++.++
T Consensus 181 ~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~-i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~ 259 (1321)
T 4f4c_A 181 RQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGF-IVAFTHSWQLTLVMLAVTPIQALCGFAIAKS 259 (1321)
T ss_dssp TSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH-HHHHHHCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888776666666666544443 3456789999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 735 RTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSL 814 (1192)
Q Consensus 735 ~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~l 814 (1192)
..+..++..+..++..+.+.|+++|+++||+||+|+.+.+||.+..++..+...+......+......++..++.+++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1321)
T 4f4c_A 260 MSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFY 339 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888889999999999999999999999999999999999999988888887777777777777777777777
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccc-ccccccccc
Q psy13234 815 LCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTISCICHLTKAV-TRIVLKRIE 893 (1192)
Q Consensus 815 l~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~~~~~~~~~v~~~~-~~i~l~~~~ 893 (1192)
++++. +.+|.+|+|++++++.++..+..|+..+......++++..+.+|+.+..+.++. ..+.. ......+.+
T Consensus 340 ~g~~~-v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~ 413 (1321)
T 4f4c_A 340 IGVGW-VHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPV-----IDSSSKAGRKDMKIK 413 (1321)
T ss_dssp HHHHH-HTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-----SSCSSSCCCCCCCCC
T ss_pred HHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-----ccccccccccCCCCC
Confidence 77877 888999999999999999999999999999888888888888888776322110 11111 111122344
Q ss_pred cccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 894 NKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
++++ |+||+|+|+. ++++|+|+| +++++|++ +|||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 414 g~I~--~~nvsF~Y~~~~~~~vL~~is---l~i~~G~~---vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~ 485 (1321)
T 4f4c_A 414 GDIT--VENVHFTYPSRPDVPILRGMN---LRVNAGQT---VALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDI 485 (1321)
T ss_dssp CCEE--EEEEEECCSSSTTSCSEEEEE---EEECTTCE---EEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTS
T ss_pred CcEE--EEEeeeeCCCCCCCceeeceE---EeecCCcE---EEEEecCCCcHHHHHHHhccccccccCcccCCCccchhc
Confidence 6788 9999999975 568999999 99999999 999999999999999999999999999999999999999
Q ss_pred ChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 972 SQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
+.+++|++||||||||+||+|||||||+||+|++++||+.+|| +.|
T Consensus 486 ~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~----------------------------------~~a 531 (1321)
T 4f4c_A 486 NLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAAC----------------------------------KMA 531 (1321)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHH----------------------------------HHT
T ss_pred cHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHH----------------------------------HHc
Confidence 9999999999999999999999999999999999999888888 999
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 1131 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAH 1131 (1192)
++||+|++||+||||+|||+|.+||||||||||||||+|+||+||||||||||||++||+.|+++|+++.++||+|+|||
T Consensus 532 ~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaH 611 (1321)
T 4f4c_A 532 NAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611 (1321)
T ss_dssp TCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECS
T ss_pred cchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhc
Q psy13234 1132 RLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175 (1192)
Q Consensus 1132 RLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~ 1175 (1192)
|++++++||+|+||++|+|+|+|||+||++++|.|++||+.|..
T Consensus 612 rls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~~ 655 (1321)
T 4f4c_A 612 RLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTF 655 (1321)
T ss_dssp CTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHHH
T ss_pred cHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999998863
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.5e-93 Score=926.86 Aligned_cols=504 Identities=25% Similarity=0.348 Sum_probs=397.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc--CChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 625 VLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLS--RKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702 (1192)
Q Consensus 625 ~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~--~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviai 702 (1192)
++.+++..++...+.++.+++|.++|++++++|++||+. +++|++++|+++|++.+++.+...+..++..++.++.++
T Consensus 809 i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~ 888 (1321)
T 4f4c_A 809 ICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGI 888 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHe
Confidence 445566777788889999999999999999999999986 789999999999999999988877777777666554443
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q psy13234 703 VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQT 782 (1192)
Q Consensus 703 v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~ 782 (1192)
.+++.++|++++++++++|++++...+..++.++...+..++.++....+.|++.|++|||+||+|+++.++|.+..++
T Consensus 889 -~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~ 967 (1321)
T 4f4c_A 889 -GLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDI 967 (1321)
T ss_dssp -HHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred -eeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHH
Confidence 3456678999998888888766655554433333333334455667778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13234 783 YQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVG--DYTLFVSYILQLYVPLNWFDALTRYLEASLV 860 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG--~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~ 860 (1192)
..+...+......+...+...+..+...++.+++++. +..+..+.+ .++.+..++.....|+..+.+....++++..
T Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1046 (1321)
T 4f4c_A 968 PHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLAL-IITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATF 1046 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT-TSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888887776666655555555554445555555555 555555544 3344444444455666666666666777766
Q ss_pred CCccccccccccccccccccccccccccccccccccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcC
Q psy13234 861 PLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQ 938 (1192)
Q Consensus 861 ~~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~ 938 (1192)
+.+|+.+..+.++. ..+........+..++++ |+||+|+|+. +.++|+|+| +++++|++ +|||||
T Consensus 1047 a~~ri~~~l~~~~~-----~~~~~~~~~~~~~~g~I~--f~nVsf~Y~~~~~~~VL~~is---l~I~~Ge~---vaIVG~ 1113 (1321)
T 4f4c_A 1047 AGGIIFGMLRKISK-----IDSLSLAGEKKKLYGKVI--FKNVRFAYPERPEIEILKGLS---FSVEPGQT---LALVGP 1113 (1321)
T ss_dssp HHHHHHHHHHCCCS-----SCTTCCCSBCCCCCCCEE--EEEEEECCTTSCSSCSEEEEE---EEECTTCE---EEEECS
T ss_pred HHHHHHHHhhCccc-----CCCccCCCCCCCCCCeEE--EEEEEEeCCCCCCCcccccee---EEECCCCE---EEEECC
Confidence 67776665221100 111111111123347788 9999999975 457999999 99999999 999999
Q ss_pred CCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccc--cCCCHHHHHHHhhh
Q psy13234 939 SGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYAR--INASEEEVKEAATS 1016 (1192)
Q Consensus 939 SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~--~~asdEeV~eAa~~ 1016 (1192)
||||||||+++|+|+|+|++|+|+|||+||+++++++||++|+||||||+||+|||||||+||. ++++||||++||
T Consensus 1114 SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al-- 1191 (1321)
T 4f4c_A 1114 SGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAA-- 1191 (1321)
T ss_dssp TTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHH--
T ss_pred CCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999999999999999994 344555555554
Q ss_pred hhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEE
Q psy13234 1017 ADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIV 1096 (1192)
Q Consensus 1017 a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~IL 1096 (1192)
+.|++||+|.++|+||||+|||+|.+||||||||||||||++|||+||
T Consensus 1192 --------------------------------~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1192 --------------------------------RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp --------------------------------HHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred --------------------------------HHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhcc
Q psy13234 1097 LLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTK 1176 (1192)
Q Consensus 1097 LLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~~ 1176 (1192)
||||||||||++||+.||++|++.+++||+|+|||||+|+++||+|+|||+|+|+|+|+|+||++++|.|++||+.|..+
T Consensus 1240 iLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~e 1319 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTE 1319 (1321)
T ss_dssp EEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC-------------
T ss_pred EEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred C
Q psy13234 1177 Q 1177 (1192)
Q Consensus 1177 ~ 1177 (1192)
+
T Consensus 1320 ~ 1320 (1321)
T 4f4c_A 1320 K 1320 (1321)
T ss_dssp -
T ss_pred c
Confidence 3
No 3
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-83 Score=780.87 Aligned_cols=502 Identities=28% Similarity=0.450 Sum_probs=441.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 625 VLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVF 704 (1192)
Q Consensus 625 ~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv~ 704 (1192)
++.+++..+....++++..++|.++|+|++++|++||+++++|++++++++|++.+++.+...+..++..++.++.++ +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~-~ 170 (598)
T 3qf4_B 92 LLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAV-I 170 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344556667778888999999999999999999999999999999999999999999988776666666655444433 3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHH
Q psy13234 705 FVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQ 784 (1192)
Q Consensus 705 ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~~ 784 (1192)
+++.++|++++++++++|+++++..++.++..+..++..+..++..+.+.|+++|+++||+||+|+++.++|++..++..
T Consensus 171 ~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 250 (598)
T 3qf4_B 171 MMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLR 250 (598)
T ss_dssp HHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 45668999999998888888888877877777777788888888999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy13234 785 VAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPK 864 (1192)
Q Consensus 785 ~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~er 864 (1192)
+...+......+...+.+++..++.++.++++++. +..|.+++|.++++.+|..++..|+..+......++++..+.+|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 329 (598)
T 3qf4_B 251 KVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWL-ALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAER 329 (598)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH-GGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777777776666666667777777 78889999999999999999999999999999888888888888
Q ss_pred ccccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHH
Q psy13234 865 KTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKS 944 (1192)
Q Consensus 865 l~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKS 944 (1192)
+.+..+.++. . +.++....++.+++++ ++|++|+|++++++++++| +++++|+. +|||||||||||
T Consensus 330 i~~~l~~~~~-----~-~~~~~~~~~~~~~~i~--~~~v~~~y~~~~~~l~~is---l~i~~G~~---~~ivG~sGsGKS 395 (598)
T 3qf4_B 330 IFEILDLEEE-----K-DDPDAVELREVRGEIE--FKNVWFSYDKKKPVLKDIT---FHIKPGQK---VALVGPTGSGKT 395 (598)
T ss_dssp HHHHTTSCCC-----C-CCSSCCCCCSCCCCEE--EEEEECCSSSSSCSCCSEE---EECCTTCE---EEEECCTTSSTT
T ss_pred HHHHHcCCCC-----C-CCCCCCCCCCCCCeEE--EEEEEEECCCCCccccceE---EEEcCCCE---EEEECCCCCcHH
Confidence 8776322210 0 0111111223346677 9999999987778999999 99999999 999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhc
Q psy13234 945 TIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERIL 1024 (1192)
Q Consensus 945 TLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~ 1024 (1192)
||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||||.+|++||+|||.+|+++.+++++.+++
T Consensus 396 Tll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~---------- 465 (598)
T 3qf4_B 396 TIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAA---------- 465 (598)
T ss_dssp HHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHT----------
T ss_pred HHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999998888888887777
Q ss_pred cCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCC
Q psy13234 1025 SFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104 (1192)
Q Consensus 1025 ~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSA 1104 (1192)
+.+++++++.++|+||||.+||+|.+||||||||+|||||+++||+|||||||||+
T Consensus 466 ------------------------~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~ 521 (598)
T 3qf4_B 466 ------------------------KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSN 521 (598)
T ss_dssp ------------------------TTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTT
T ss_pred ------------------------HHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhcc
Q psy13234 1105 LDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTK 1176 (1192)
Q Consensus 1105 LD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~~ 1176 (1192)
||+++|+.|++.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||++++|.|+++|+.|...
T Consensus 522 LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 593 (598)
T 3qf4_B 522 VDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGL 593 (598)
T ss_dssp CCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhhh
Confidence 999999999999999989999999999999999999999999999999999999999999999999988754
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-82 Score=768.45 Aligned_cols=503 Identities=25% Similarity=0.410 Sum_probs=438.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 624 GVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIV 703 (1192)
Q Consensus 624 ~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv 703 (1192)
.++.+++..+....++++..++|.++|+|++++|+.+|+++++|++++++++|++.+++++...+..++..++.++.+ +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~-~ 155 (587)
T 3qf4_A 77 AVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGG-I 155 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 445566777888899999999999999999999999999999999999999999999998877665555554433333 3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q psy13234 704 FFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTY 783 (1192)
Q Consensus 704 ~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~ 783 (1192)
++++.++|.+++++++++|+++++..++.++..+..++..+..++..+.+.|+++|+++||+||+|+++.++|.+..+++
T Consensus 156 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 235 (587)
T 3qf4_A 156 VMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESL 235 (587)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34566789999999888888877777777777777778888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy13234 784 QVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLP 863 (1192)
Q Consensus 784 ~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~e 863 (1192)
.+...+..........+..++..++.++.++++++. +.+|.+++|.++++..|..++..|+..+......++++..+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~-v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ 314 (587)
T 3qf4_A 236 RRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVL-VRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAK 314 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888777766666666666666666667777777 7788999999999999999999999999888888888888888
Q ss_pred cccccccccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCc
Q psy13234 864 KKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAG 942 (1192)
Q Consensus 864 rl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSG 942 (1192)
|+.+..+.++. ..+.......+..++.++ ++|++|+|+. ++++++++| +++++|+. +|||||||||
T Consensus 315 ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~--~~~v~~~y~~~~~~~l~~is---l~i~~Ge~---~~ivG~sGsG 381 (587)
T 3qf4_A 315 RVLEVLNEKPA-----IEEADNALALPNVEGSVS--FENVEFRYFENTDPVLSGVN---FSVKPGSL---VAVLGETGSG 381 (587)
T ss_dssp HHHHHHHCCCS-----CCCCTTCBCCSCCCCCEE--EEEEEECSSSSSCCSEEEEE---EEECTTCE---EEEECSSSSS
T ss_pred HHHHHHcCCCc-----cCCCCCccccCCCCCcEE--EEEEEEEcCCCCCcceeceE---EEEcCCCE---EEEECCCCCC
Confidence 87776322100 011111111122346677 9999999975 568999999 99999999 9999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhh
Q psy13234 943 KSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHER 1022 (1192)
Q Consensus 943 KSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~ 1022 (1192)
||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||++|+++++++++.+|+
T Consensus 382 KSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~-------- 453 (587)
T 3qf4_A 382 KSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAA-------- 453 (587)
T ss_dssp HHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHH--------
T ss_pred HHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999998888887777777
Q ss_pred hccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q psy13234 1023 ILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEAT 1102 (1192)
Q Consensus 1023 i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEAT 1102 (1192)
+.++++|++.++|+||||.+||+|.+||||||||+|||||+++||+||||||||
T Consensus 454 --------------------------~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt 507 (587)
T 3qf4_A 454 --------------------------KIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT 507 (587)
T ss_dssp --------------------------HHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC
T ss_pred --------------------------HHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhc
Q psy13234 1103 SALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175 (1192)
Q Consensus 1103 SALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~ 1175 (1192)
|+||+++|+.|++.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|+||+++++.|+++|+.|..
T Consensus 508 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 508 SSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFG 580 (587)
T ss_dssp TTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHHHC-
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHhc
Confidence 9999999999999999998999999999999999999999999999999999999999999999999998864
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.5e-82 Score=765.94 Aligned_cols=504 Identities=32% Similarity=0.457 Sum_probs=440.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 622 GMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 701 (1192)
Q Consensus 622 ~~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~divia 701 (1192)
...++.+.+.++...+++++..++|.++|+|++++|++||+++++|++++++++|++.++++....+..++..++.++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~ 152 (578)
T 4a82_A 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIA 152 (578)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888999999999999999999999999999999999999999999999887765444444444433333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHH
Q psy13234 702 IVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQ 781 (1192)
Q Consensus 702 iv~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~ 781 (1192)
+++++.++|++++++++++|+++++..++.++..+..++..+..++..+.+.|+++|+++||+||+|+.+.++|++..+
T Consensus 153 -~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 231 (578)
T 4a82_A 153 -LSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNT 231 (578)
T ss_dssp -HHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHH
Confidence 3345667899999998888888888778877777777888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13234 782 TYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVP 861 (1192)
Q Consensus 782 ~~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~ 861 (1192)
+..+...+..........+...+..++.++.++++++. +.+|.+|+|.++++..|..++..|+..+......++++..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 310 (578)
T 4a82_A 232 NFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYL-AISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFAS 310 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888887777777777777666666667777777 77889999999999999999999999999988888888888
Q ss_pred CccccccccccccccccccccccccccccccccccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCC
Q psy13234 862 LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSG 940 (1192)
Q Consensus 862 ~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SG 940 (1192)
.+|+.+..+.++. ..+..+..+.+..++.++ ++|++|+|+. ++++++++| +++++|+. +|||||||
T Consensus 311 ~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~--~~~v~~~y~~~~~~~l~~is---l~i~~G~~---~~ivG~sG 377 (578)
T 4a82_A 311 MDRVFQLIDEDYD-----IKNGVGAQPIEIKQGRID--IDHVSFQYNDNEAPILKDIN---LSIEKGET---VAFVGMSG 377 (578)
T ss_dssp HHHHHHHHTCCCS-----SCCCTTCCCCCCCSCCEE--EEEEEECSCSSSCCSEEEEE---EEECTTCE---EEEECSTT
T ss_pred HHHHHHHHcCCCc-----ccCCCCccccCCCCCeEE--EEEEEEEcCCCCCcceeeeE---EEECCCCE---EEEECCCC
Confidence 8888776322110 011111111122235677 9999999986 567999999 99999999 99999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhh
Q psy13234 941 AGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIH 1020 (1192)
Q Consensus 941 SGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh 1020 (1192)
||||||+++|.|+|+|++|+|.+||+|+++++.+++|++||||||||.+|++||+|||.+|+++.+++++.+++
T Consensus 378 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~------ 451 (578)
T 4a82_A 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA------ 451 (578)
T ss_dssp SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHH------
T ss_pred ChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999998888888777777
Q ss_pred hhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q psy13234 1021 ERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE 1100 (1192)
Q Consensus 1021 ~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDE 1100 (1192)
+.+++++++.++|+||||.+||+|.+||||||||+|||||+++||+|++|||
T Consensus 452 ----------------------------~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDE 503 (578)
T 4a82_A 452 ----------------------------KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 503 (578)
T ss_dssp ----------------------------HHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred ----------------------------HHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1101 ATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1101 ATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
|||+||+++|+.+++.+++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||++++|.|+++|+.|+
T Consensus 504 pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~q~ 577 (578)
T 4a82_A 504 ATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577 (578)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTTTT
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.7e-80 Score=752.68 Aligned_cols=501 Identities=29% Similarity=0.431 Sum_probs=440.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviai 702 (1192)
..++.+.+..+....++++..++|.++|+|++++|+++|+++++|++++++++|++.+++.+...+..++..++.+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~ 157 (582)
T 3b5x_A 78 RGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLL 157 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888889999999999999999999999999999999999999999999999987766666666665544443
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q psy13234 703 VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQT 782 (1192)
Q Consensus 703 v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~ 782 (1192)
+ +++.++|++++++++++|+++++..++.++..+..++..+..++..+.+.|.++|+++||+||+|+++.++|++..++
T Consensus 158 ~-~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~ 236 (582)
T 3b5x_A 158 T-LMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNS 236 (582)
T ss_pred H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3 445689999999988888887777777777777777778888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13234 783 YQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPL 862 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~ 862 (1192)
+.+...+......+...+..++..++.++.++++++. +.+|.+|+|+++++..+..++..|+..+......++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~ 315 (582)
T 3b5x_A 237 MRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVD-SIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAAC 315 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888887777777766667777777 778899999999999999999999999999999998888888
Q ss_pred ccccccccccccccccccccccccccccccccccccccccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCC
Q psy13234 863 PKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGA 941 (1192)
Q Consensus 863 erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGS 941 (1192)
+|+.+..+.++. ..+ +..+.+...+.++ ++|++|+|+.+ +++++++| +++++|+. +||||||||
T Consensus 316 ~ri~~~l~~~~~-----~~~--~~~~~~~~~~~i~--~~~v~~~y~~~~~~~l~~i~---l~i~~G~~---~~ivG~sGs 380 (582)
T 3b5x_A 316 QTLFGLMDLETE-----RDN--GKYEAERVNGEVD--VKDVTFTYQGKEKPALSHVS---FSIPQGKT---VALVGRSGS 380 (582)
T ss_pred HHHHHHHcCCCc-----CCC--CCCCCCCCCCeEE--EEEEEEEcCCCCccccccce---EEECCCCE---EEEECCCCC
Confidence 887776322210 000 0011111235577 99999999753 67999999 99999999 999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccc-cCCCHHHHHHHhhhhhhh
Q psy13234 942 GKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYAR-INASEEEVKEAATSADIH 1020 (1192)
Q Consensus 942 GKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~-~~asdEeV~eAa~~a~lh 1020 (1192)
|||||+++|.|+|+|++|+|.+||+|+++++.+++|++||||||||.+|++||+|||.+|+ ++.+++++.+++
T Consensus 381 GKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~------ 454 (582)
T 3b5x_A 381 GKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAA------ 454 (582)
T ss_pred CHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHH------
Confidence 9999999999999999999999999999999999999999999999999999999999987 556666666655
Q ss_pred hhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q psy13234 1021 ERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE 1100 (1192)
Q Consensus 1021 ~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDE 1100 (1192)
+.+++++++.++|+||||.+||+|.+||||||||+|||||+++||+|++|||
T Consensus 455 ----------------------------~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDE 506 (582)
T 3b5x_A 455 ----------------------------RQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE 506 (582)
T ss_pred ----------------------------HHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1101 ATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1101 ATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
|||+||+++|+.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||+++++.|+++|+.|.
T Consensus 507 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 507 ATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHhh
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999884
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.5e-80 Score=753.05 Aligned_cols=501 Identities=29% Similarity=0.421 Sum_probs=439.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviai 702 (1192)
..++.+++..+....++++..++|.++|+|++++|+++|+++++|++++++++|++.+++.+...+..++..++.+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~ 157 (582)
T 3b60_A 78 RGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLF 157 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888889999999999999999999999999999999999999999999999987776666666665544443
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q psy13234 703 VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQT 782 (1192)
Q Consensus 703 v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~ 782 (1192)
+ +++.++|++++++++++|+++++..++.++..+..++..+..++..+.+.|+++|+++||+||+|+++.++|.+..++
T Consensus 158 ~-~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~ 236 (582)
T 3b60_A 158 I-MMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNK 236 (582)
T ss_dssp H-HHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3 445689999999888888877777777777777777788888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13234 783 YQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPL 862 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~ 862 (1192)
+.+...+......+...+..++..++.++.++++++. +.+|.+|+|+++++..+..++..|+..+......++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~ 315 (582)
T 3b60_A 237 MRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFP-SVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAAC 315 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-STTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888887777776666666677776 778999999999999999999999999999999988888888
Q ss_pred ccccccccccccccccccccccccccccccccccccccccceeeecCC-CCccccccccceeecCCcccceEEEEcCCCC
Q psy13234 863 PKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKG-KGTRDAIGCLRMIALESQLVWYLLQVGQSGA 941 (1192)
Q Consensus 863 erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~-~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGS 941 (1192)
+|+.+..+.++. ..+ +..+.+...+.++ ++|++|+|+.+ +++++++| +++++|+. +||||||||
T Consensus 316 ~ri~~~l~~~~~-----~~~--~~~~~~~~~~~i~--~~~v~~~y~~~~~~~l~~v~---~~i~~G~~---~~ivG~sGs 380 (582)
T 3b60_A 316 QTLFAILDSEQE-----KDE--GKRVIDRATGDLE--FRNVTFTYPGREVPALRNIN---LKIPAGKT---VALVGRSGS 380 (582)
T ss_dssp HHHHHHHHSCCS-----CCC--CCBCCSCCCCCEE--EEEEEECSSSSSCCSEEEEE---EEECTTCE---EEEEECTTS
T ss_pred HHHHHHHcCCCC-----ccC--CCCCCCCCCCcEE--EEEEEEEcCCCCCcccccee---EEEcCCCE---EEEECCCCC
Confidence 887766322100 000 0111112235577 99999999753 78999999 99999999 999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccc-cCCCHHHHHHHhhhhhhh
Q psy13234 942 GKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYAR-INASEEEVKEAATSADIH 1020 (1192)
Q Consensus 942 GKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~-~~asdEeV~eAa~~a~lh 1020 (1192)
|||||+++|.|+++|++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.+++ ++.+++++.+++
T Consensus 381 GKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l------ 454 (582)
T 3b60_A 381 GKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAA------ 454 (582)
T ss_dssp SHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHH------
T ss_pred CHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHH------
Confidence 9999999999999999999999999999999999999999999999999999999999986 556666666665
Q ss_pred hhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q psy13234 1021 ERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE 1100 (1192)
Q Consensus 1021 ~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDE 1100 (1192)
+.+++++++.++|+||||.+||+|.+||||||||+|||||+++||+|++|||
T Consensus 455 ----------------------------~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDE 506 (582)
T 3b60_A 455 ----------------------------RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506 (582)
T ss_dssp ----------------------------HTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEET
T ss_pred ----------------------------HHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1101 ATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1101 ATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
|||+||+++|+.|++.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|+||+++++.|+++|+.|.
T Consensus 507 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHTC
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhc
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999874
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=9.9e-80 Score=747.69 Aligned_cols=504 Identities=27% Similarity=0.372 Sum_probs=419.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 624 GVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIV 703 (1192)
Q Consensus 624 ~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv 703 (1192)
.++.+.+..+....++++..++|.++|+|++++|++||+++++|++++++++|++.+++.+...+..++..++..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~- 154 (595)
T 2yl4_A 76 AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGI- 154 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3456677778888999999999999999999999999999999999999999999999877766666665555444333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q psy13234 704 FFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTY 783 (1192)
Q Consensus 704 ~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~ 783 (1192)
++++.++|++++++++.+|+++++...+.++..+..++..+..++..+.+.|+++|+++||+||+|+++.++|++..+++
T Consensus 155 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 234 (595)
T 2yl4_A 155 SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHV 234 (595)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 34456899999998888888777777777777777777888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy13234 784 QVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLP 863 (1192)
Q Consensus 784 ~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~e 863 (1192)
.+...+......+...+..++..++.++.++++++. +.+|.+|+|+++++..+..++..|+..+......++++..+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ 313 (595)
T 2yl4_A 235 MQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLL-MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGG 313 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888887777777777766666666666777777 7789999999999999999999999999999988888888888
Q ss_pred cccccccccccccccccccccccccccccccc-cccccccceeeecCC--CCccccccccceeecCCcccceEEEEcCCC
Q psy13234 864 KKTNAKECRTISCICHLTKAVTRIVLKRIENK-IEENMEEDQFGFRKG--KGTRDAIGCLRMIALESQLVWYLLQVGQSG 940 (1192)
Q Consensus 864 rl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~-I~~~fenVsFsY~~~--~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SG 940 (1192)
|+.+..+.++. ..+..+....+...++ ++ ++|++|+|+.+ +++++++| +++++|+. +|||||||
T Consensus 314 ri~~~l~~~~~-----~~~~~~~~~~~~~~~~~i~--~~~v~~~y~~~~~~~vl~~is---l~i~~G~~---~~ivG~sG 380 (595)
T 2yl4_A 314 RLWELLEREPK-----LPFNEGVILNEKSFQGALE--FKNVHFAYPARPEVPIFQDFS---LSIPSGSV---TALVGPSG 380 (595)
T ss_dssp HHHHHHTCCCS-----SCSSCSBCCCTTTCCCCEE--EEEEEEECSSCTTSEEEEEEE---EEECTTCE---EEEECCTT
T ss_pred HHHHHHcCCCc-----cCCCCCCCCCcCCCCCeEE--EEEEEEEeCCCCCCccccceE---EEEcCCCE---EEEECCCC
Confidence 87766322100 0000011111112355 77 99999999753 46899999 99999999 99999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccC---CCHHHHHHHhhhh
Q psy13234 941 AGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARIN---ASEEEVKEAATSA 1017 (1192)
Q Consensus 941 SGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~---asdEeV~eAa~~a 1017 (1192)
||||||+++|.|+++|++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.+|++. .++|++.+
T Consensus 381 sGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~----- 455 (595)
T 2yl4_A 381 SGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQR----- 455 (595)
T ss_dssp SSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHH-----
T ss_pred CCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHH-----
Confidence 9999999999999999999999999999999999999999999999999999999999998754 44444444
Q ss_pred hhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q psy13234 1018 DIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVL 1097 (1192)
Q Consensus 1018 ~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILL 1097 (1192)
+++.+++++++.++|+||||++||+|.+||||||||+|||||+++||+|+|
T Consensus 456 -----------------------------~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~ill 506 (595)
T 2yl4_A 456 -----------------------------VAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILL 506 (595)
T ss_dssp -----------------------------HHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred -----------------------------HHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 459999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHh-cCcHHHHHHHHhhcc
Q psy13234 1098 LDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLE-RNGVYASMWIQQNTK 1176 (1192)
Q Consensus 1098 LDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~-~~G~Ya~L~~~Q~~~ 1176 (1192)
||||||+||+++|+.+++.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||++ .++.|+++|+.|..+
T Consensus 507 lDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~~~ 586 (595)
T 2yl4_A 507 LDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFI 586 (595)
T ss_dssp EECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C------------
T ss_pred EECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhhcc
Confidence 9999999999999999999999888999999999999999999999999999999999999998 489999999988544
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.4e-79 Score=801.12 Aligned_cols=504 Identities=25% Similarity=0.364 Sum_probs=441.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 623 MGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702 (1192)
Q Consensus 623 ~~~l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviai 702 (1192)
..++.+++..++..++++..+++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.++.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 200 (1284)
T 3g5u_A 121 VLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGF 200 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888999999999999999999999999999999999999999999999999998877777776665444433
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q psy13234 703 VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQT 782 (1192)
Q Consensus 703 v~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~ 782 (1192)
++++.++|.+++++++++|+++++..++.+..++..++..++.++..+.+.|+++|++|||+||+|+++.++|++..++
T Consensus 201 -~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~ 279 (1284)
T 3g5u_A 201 -IIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEE 279 (1284)
T ss_dssp -HHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHH
Confidence 4556678999999999999988888888887777777888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13234 783 YQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPL 862 (1192)
Q Consensus 783 ~~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~ 862 (1192)
+.+...+..........+..++..++.++++++++++ +..|.+++|+++++..++.....|+..+......++.+..+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-v~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 358 (1284)
T 3g5u_A 280 AKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSL-VISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAA 358 (1284)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777777777776666666677777778877 778889999998888888888889988888888888777777
Q ss_pred cccccccccccccccccccc-ccccccccccccccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcCC
Q psy13234 863 PKKTNAKECRTISCICHLTK-AVTRIVLKRIENKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQS 939 (1192)
Q Consensus 863 erl~~~~~~~~~~~~~~v~~-~~~~i~l~~~~g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~S 939 (1192)
+|+.+..+.++. ..+ .......++.++.++ ++|++|+|+. ++++++++| +++++|+. +||||||
T Consensus 359 ~ri~~~l~~~~~-----~~~~~~~~~~~~~~~g~i~--~~~v~~~y~~~~~~~vL~~is---l~i~~G~~---~~ivG~s 425 (1284)
T 3g5u_A 359 YEVFKIIDNKPS-----IDSFSKSGHKPDNIQGNLE--FKNIHFSYPSRKEVQILKGLN---LKVKSGQT---VALVGNS 425 (1284)
T ss_dssp HHHHHTTSCCCC-----CSSCCSSCCCCTTCCCCEE--EEEEEECCSSTTSCCSEEEEE---EEECTTCE---EEEECCS
T ss_pred HHHHHHHcCCCc-----CCcccccCCCCCCCCCeEE--EEEEEEEcCCCCCCcceecce---EEEcCCCE---EEEECCC
Confidence 777766322100 000 011111223346788 9999999985 357999999 99999999 9999999
Q ss_pred CCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhh
Q psy13234 940 GAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADI 1019 (1192)
Q Consensus 940 GSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~l 1019 (1192)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||||+||++||+|||.+|++++++|++.+|+
T Consensus 426 GsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~----- 500 (1284)
T 3g5u_A 426 GCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAV----- 500 (1284)
T ss_dssp SSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHH-----
T ss_pred CCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999998888888887777
Q ss_pred hhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEe
Q psy13234 1020 HERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLD 1099 (1192)
Q Consensus 1020 h~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLD 1099 (1192)
+.+++++++.++|+||||.+||+|.+||||||||||||||+++||+|||||
T Consensus 501 -----------------------------~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLD 551 (1284)
T 3g5u_A 501 -----------------------------KEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD 551 (1284)
T ss_dssp -----------------------------HHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred -----------------------------HHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhc
Q psy13234 1100 EATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175 (1192)
Q Consensus 1100 EATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~ 1175 (1192)
|||||||++||+.|++.+++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++|.|++++..|..
T Consensus 552 Epts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 627 (1284)
T 3g5u_A 552 EATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTA 627 (1284)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988764
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.3e-78 Score=784.38 Aligned_cols=504 Identities=26% Similarity=0.379 Sum_probs=412.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc--cCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13234 626 LNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHL--SRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIV 703 (1192)
Q Consensus 626 l~~~rs~l~~~v~~~~~~~Lr~~lF~~ll~l~l~ff~--~~~tGeilsrlsrd~~~I~~ll~~~l~~il~~l~diviaiv 703 (1192)
...++..++...+.+...++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..+..++.. +
T Consensus 765 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~-~ 843 (1284)
T 3g5u_A 765 TFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTG-I 843 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445666777888999999999999999999999999 488999999999999999998887777666666544433 3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q psy13234 704 FFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTY 783 (1192)
Q Consensus 704 ~ll~~~~~~lalIvl~~l~l~li~~~~l~~~~~k~~r~~~~a~s~l~~~~~EsL~Gi~TIKafg~E~~~~~rf~~~~~~~ 783 (1192)
.+++.++|.+++++++.+|++++...+..+...+..++..+........+.|++.|+++||+|++|+++.++|.+..+..
T Consensus 844 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~ 923 (1284)
T 3g5u_A 844 IISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIP 923 (1284)
T ss_dssp HHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34556788888888888888777666665555555555555666677788999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy13234 784 QVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLP 863 (1192)
Q Consensus 784 ~~~~~~~~~~~~~l~~lq~li~~~gll~~~ll~a~~vv~~g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~e 863 (1192)
.+...+..........+...+.....++..+++++. +..|.+++|+++.+..++.....|+..+......++.+..+.+
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1002 (1284)
T 3g5u_A 924 YRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYL-VTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSAS 1002 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666666665555655666666666777776 7888999999998888888888887665443333333333334
Q ss_pred ccccccccccccccccccc-ccccccccccccccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcCCC
Q psy13234 864 KKTNAKECRTISCICHLTK-AVTRIVLKRIENKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSG 940 (1192)
Q Consensus 864 rl~~~~~~~~~~~~~~v~~-~~~~i~l~~~~g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SG 940 (1192)
++.+..+.++. ..+ ..........++.++ ++|++|+|+. +.++++++| +.+++|+. +|||||||
T Consensus 1003 ri~~~l~~~~~-----~~~~~~~~~~~~~~~g~i~--~~~v~~~y~~~~~~~~l~~vs---l~i~~Ge~---v~ivG~sG 1069 (1284)
T 3g5u_A 1003 HIIRIIEKTPE-----IDSYSTQGLKPNMLEGNVQ--FSGVVFNYPTRPSIPVLQGLS---LEVKKGQT---LALVGSSG 1069 (1284)
T ss_dssp HHHHHHHSCCS-----SSSCCSSCCCTTTTSCCEE--EEEEEBCCSCGGGCCSBSSCC---EEECSSSE---EEEECSSS
T ss_pred HHHHHHcCCCc-----ccccccccccccCCCCcEE--EEEEEEECCCCCCCeeeccee---EEEcCCCE---EEEECCCC
Confidence 44433111100 000 000111122346677 9999999975 347999999 99999999 99999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccC--CCHHHHHHHhhhhh
Q psy13234 941 AGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARIN--ASEEEVKEAATSAD 1018 (1192)
Q Consensus 941 SGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~--asdEeV~eAa~~a~ 1018 (1192)
||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||++|++. .+++++.+|+
T Consensus 1070 sGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~---- 1145 (1284)
T 3g5u_A 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA---- 1145 (1284)
T ss_dssp TTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHH----
T ss_pred CCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999998753 4555555555
Q ss_pred hhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEE
Q psy13234 1019 IHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLL 1098 (1192)
Q Consensus 1019 lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLL 1098 (1192)
+.+++++++.++|+||||+|||+|.+||||||||||||||++++|+||||
T Consensus 1146 ------------------------------~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiL 1195 (1284)
T 3g5u_A 1146 ------------------------------KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLL 1195 (1284)
T ss_dssp ------------------------------HHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEE
T ss_pred ------------------------------HHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhccCC
Q psy13234 1099 DEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTKQS 1178 (1192)
Q Consensus 1099 DEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~~~~ 1178 (1192)
|||||+||+++|+.|+++|++..+|+|+|+||||++++.+||||+||++|+|+|.|+|+||++++|.|++||+.|..+..
T Consensus 1196 DEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~~~~~ 1275 (1284)
T 3g5u_A 1196 DEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKR 1275 (1284)
T ss_dssp ESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC----
T ss_pred eCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhhccc
Confidence 99999999999999999999998999999999999999999999999999999999999999999999999999875543
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.8e-64 Score=565.56 Aligned_cols=279 Identities=55% Similarity=0.822 Sum_probs=243.8
Q ss_pred HHHHHHHhcCCCccccccccccccccccccccccccccccccccccccccccceeeecCCCCccccccccceeecCCccc
Q psy13234 851 LTRYLEASLVPLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLV 930 (1192)
Q Consensus 851 ~~~~l~~a~~~~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~G 930 (1192)
+.+.++++..+++|+.+..+.+.. ..+.+...+.+...+.++ ++|++|+|+.++++++++| +.+++|+.
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~--~~~vs~~y~~~~~vL~~is---l~i~~Ge~- 82 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETE-----VKDLPGAGPLRFQKGRIE--FENVHFSYADGRETLQDVS---FTVMPGQT- 82 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHS-----CCCCTTCBCCCCSSCCEE--EEEEEEESSTTCEEEEEEE---EEECTTCE-
T ss_pred cchhHHHHHHHHHHHHHHHhCCcc-----ccccccccccCCCCCeEE--EEEEEEEcCCCCceeeeee---EEEcCCCE-
Confidence 345566777777777766221100 111111111122235677 9999999987778999999 99999999
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHH
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEV 1010 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV 1010 (1192)
+|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|.||++||+|||.||++.++++++
T Consensus 83 --vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~ 160 (306)
T 3nh6_A 83 --LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV 160 (306)
T ss_dssp --EEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHH
T ss_pred --EEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877776666
Q ss_pred HHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q psy13234 1011 KEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLL 1090 (1192)
Q Consensus 1011 ~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALL 1090 (1192)
.+++ +.+++++++.++|+||||.+||+|.+|||||||||||||||+
T Consensus 161 ~~~~----------------------------------~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 161 EAAA----------------------------------QAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp HHHH----------------------------------HHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred HHHH----------------------------------HHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 6666 999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1091 KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1091 rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
++|+|||||||||+||+++++.|++.|+++.+++|+|+||||++++..||+|+||++|+|+|.|+|+||++++|.|++||
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~ 286 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMW 286 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHhhcc
Q psy13234 1171 IQQNTK 1176 (1192)
Q Consensus 1171 ~~Q~~~ 1176 (1192)
+.|...
T Consensus 287 ~~q~~~ 292 (306)
T 3nh6_A 287 QLQQGQ 292 (306)
T ss_dssp HHHHCC
T ss_pred HHHHhh
Confidence 998753
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.6e-53 Score=461.96 Aligned_cols=237 Identities=42% Similarity=0.668 Sum_probs=219.4
Q ss_pred ccccccccceeeec-CCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh
Q psy13234 895 KIEENMEEDQFGFR-KGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 895 ~I~~~fenVsFsY~-~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~ 973 (1192)
.++ ++|++++|+ .++++++++| +.+++|+. +||+||||||||||+++|+|+++|++|+|.+||+|+.+++.
T Consensus 7 ~~~--~~~l~~~y~~~~~~vl~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~ 78 (247)
T 2ff7_A 7 DIT--FRNIRFRYKPDSPVILDNIN---LSIKQGEV---IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78 (247)
T ss_dssp EEE--EEEEEEESSTTSCEEEEEEE---EEEETTCE---EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH
T ss_pred cee--EEEEEEEeCCCCcceeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence 355 999999995 3567899999 99999999 99999999999999999999999999999999999999998
Q ss_pred HhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
..+|++|+||||+|.+|++|++|||.++.+..+++++ .++++.+++
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~----------------------------------~~~l~~~~l 124 (247)
T 2ff7_A 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV----------------------------------IYAAKLAGA 124 (247)
T ss_dssp HHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHH----------------------------------HHHHHHHTC
T ss_pred HHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHH----------------------------------HHHHHHhCh
Confidence 8999999999999999999999999987544444444 444599999
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecCh
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 1133 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRL 1133 (1192)
.+++.++|+||++.+++++.+||||||||++|||||+++|++||||||||+||+++++.+.+.|++..+++|+|+|||++
T Consensus 125 ~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~ 204 (247)
T 2ff7_A 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL 204 (247)
T ss_dssp HHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSG
T ss_pred HHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887789999999999
Q ss_pred hHHHhcCEEEEEeCCEEEEEcCHHHHHhc-CcHHHHHHHHh
Q psy13234 1134 STIIHADEILVMHAGEIVERGRHEELLER-NGVYASMWIQQ 1173 (1192)
Q Consensus 1134 STI~~aDrIlVLe~G~IvE~GtheELL~~-~G~Ya~L~~~Q 1173 (1192)
+.+..||+|++|++|++++.|+++|+++. ++.|++++..|
T Consensus 205 ~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 205 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp GGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHhh
Confidence 99989999999999999999999999987 89999999866
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.2e-52 Score=458.48 Aligned_cols=239 Identities=48% Similarity=0.779 Sum_probs=219.9
Q ss_pred cccccccccceeeecCC--CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 894 NKIEENMEEDQFGFRKG--KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~--~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
..++ ++|++++|+.. +++++++| +.+.+|+. +||+||||||||||+++|.|+++| +|+|.+||+|+.+.
T Consensus 16 ~~l~--i~~l~~~y~~~~~~~vl~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~ 86 (260)
T 2ghi_A 16 VNIE--FSDVNFSYPKQTNHRTLKSIN---FFIPSGTT---CALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKY 86 (260)
T ss_dssp CCEE--EEEEEECCTTCCSSCSEEEEE---EEECTTCE---EEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGB
T ss_pred CeEE--EEEEEEEeCCCCcCceeEeeE---EEECCCCE---EEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhc
Confidence 3466 99999999753 46899999 99999998 999999999999999999999997 89999999999998
Q ss_pred ChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 972 SQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
+...+|++|+||||+|.+|++|++|||.++.+..+++++.+ +++.+
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~----------------------------------~l~~~ 132 (260)
T 2ghi_A 87 NRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIK----------------------------------ATKSA 132 (260)
T ss_dssp CHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHH----------------------------------HHHHT
T ss_pred CHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHH----------------------------------HHHHh
Confidence 88899999999999999999999999998754444444444 44899
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 1131 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAH 1131 (1192)
++.+++..+|+|+||.+++++.+||||||||++||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+|||
T Consensus 133 ~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH 212 (260)
T 2ghi_A 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH 212 (260)
T ss_dssp TCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred ChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhc
Q psy13234 1132 RLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175 (1192)
Q Consensus 1132 RLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~ 1175 (1192)
+++.+..||+|++|++|++++.|+++++++.++.|.++|..|..
T Consensus 213 ~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 256 (260)
T 2ghi_A 213 RLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQSG 256 (260)
T ss_dssp SGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHC
T ss_pred CHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhhhh
Confidence 99999899999999999999999999999988999999988753
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.6e-53 Score=459.10 Aligned_cols=235 Identities=37% Similarity=0.615 Sum_probs=216.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.++++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||+|+.+.+...+|++
T Consensus 4 ~~~l~~~y~~~~~vl~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDIS---FEAQPNSI---IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ 77 (243)
T ss_dssp EEEEEECSSSSSCSEEEEE---EEECTTEE---EEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred EEEEEEEeCCCCceEEEeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhh
Confidence 7899999965567899999 99999998 99999999999999999999999999999999999998888889999
Q ss_pred EEEEcCCCccccccHHHHHhcc-ccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G-~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
|+||||+|.+|++|++|||.++ .+..+++++ .++++.+++++++.
T Consensus 78 i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~----------------------------------~~~l~~~~l~~~~~ 123 (243)
T 1mv5_A 78 IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDL----------------------------------WQVLDLAFARSFVE 123 (243)
T ss_dssp CCEECCSSCCCCEEHHHHTTSCTTSCSCHHHH----------------------------------HHHHHHHTCTTTTT
T ss_pred EEEEcCCCccccccHHHHHhhhccCCCCHHHH----------------------------------HHHHHHhChHHHHH
Confidence 9999999999999999999987 433444444 44458899999999
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHh
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~ 1138 (1192)
++|+|++|.+++++.+||||||||++||||++++|++||||||||+||+++++.+.+.|++..+++|+|+|||+++.+..
T Consensus 124 ~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 203 (243)
T 1mv5_A 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (243)
T ss_dssp SSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred hCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988788999999999999999
Q ss_pred cCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1139 ADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1139 aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
||+|++|++|++++.|+++++++..+.|++++..|.
T Consensus 204 ~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 239 (243)
T 1mv5_A 204 ADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQL 239 (243)
T ss_dssp CSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCCC
T ss_pred CCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHhhh
Confidence 999999999999999999999998888999997553
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.6e-51 Score=453.97 Aligned_cols=239 Identities=32% Similarity=0.559 Sum_probs=217.2
Q ss_pred cccccccccceeeecC--CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 894 NKIEENMEEDQFGFRK--GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~--~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
+.++ ++|++++|+. ++++++++| +.+.+|+. +||+||||||||||+++|+|+++|++|+|.+||+|+.+.
T Consensus 15 ~~l~--~~~l~~~y~~~~~~~vl~~vs---l~i~~Ge~---~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~ 86 (271)
T 2ixe_A 15 GLVK--FQDVSFAYPNHPNVQVLQGLT---FTLYPGKV---TALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY 86 (271)
T ss_dssp CCEE--EEEEEECCTTCTTSCCEEEEE---EEECTTCE---EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB
T ss_pred ceEE--EEEEEEEeCCCCCceeeEeeE---EEECCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC
Confidence 3466 9999999975 267899999 99999999 999999999999999999999999999999999999988
Q ss_pred ChHhhcccEEEEcCCCccccccHHHHHhccccCCCH-HHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 972 SQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASE-EEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 972 ~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asd-EeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
+...+|++|+||||+|.+|+.|++|||.++.+..++ +++.++ ++.
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~----------------------------------~~~ 132 (271)
T 2ixe_A 87 DHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV----------------------------------AME 132 (271)
T ss_dssp CHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHH----------------------------------HHH
T ss_pred CHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHH----------------------------------HHH
Confidence 888899999999999999999999999987543332 334333 377
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEE
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTII 1128 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIv 1128 (1192)
+++++++..+|+|+++.+++.+.+||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++..+ ++|+|+
T Consensus 133 ~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tvii 212 (271)
T 2ixe_A 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212 (271)
T ss_dssp HTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEE
T ss_pred HhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 889999999999999999999999999999999999999999999999999999999999999999998864 799999
Q ss_pred EecChhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhh
Q psy13234 1129 VAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174 (1192)
Q Consensus 1129 IAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~ 1174 (1192)
|||+++.+..||+|++|++|++++.|+++++++..+.|.++++.|.
T Consensus 213 vtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 258 (271)
T 2ixe_A 213 ITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEALA 258 (271)
T ss_dssp ECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHC--
T ss_pred EeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHHHHhh
Confidence 9999999988999999999999999999999998999999997664
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-48 Score=451.21 Aligned_cols=231 Identities=25% Similarity=0.429 Sum_probs=211.0
Q ss_pred cccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC
Q psy13234 894 NKIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS 972 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~ 972 (1192)
+.++ ++|++++|+. ++++++++| +.+.+|+. ++|+||||||||||+|+|+|+++ ++|+|.+||+|+.+++
T Consensus 18 ~~i~--~~~l~~~y~~~~~~~L~~vs---l~i~~Ge~---~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~ 88 (390)
T 3gd7_A 18 GQMT--VKDLTAKYTEGGNAILENIS---FSISPGQR---VGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT 88 (390)
T ss_dssp CCEE--EEEEEEESSSSSCCSEEEEE---EEECTTCE---EEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC
T ss_pred CeEE--EEEEEEEecCCCeEEeecee---EEEcCCCE---EEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC
Confidence 4577 9999999973 567899999 99999999 99999999999999999999998 8999999999999999
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
.+.+|+.||||||++.||+.|++|||.+.. ..++ ++++++++.++
T Consensus 89 ~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~-~~~~----------------------------------~~v~~~l~~~~ 133 (390)
T 3gd7_A 89 LEQWRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSD----------------------------------QEIWKVADEVG 133 (390)
T ss_dssp HHHHHHTEEEESCCCCCCSEEHHHHHCTTC-CSCH----------------------------------HHHHHHHHHTT
T ss_pred hHHHhCCEEEEcCCcccCccCHHHHhhhcc-ccCH----------------------------------HHHHHHHHHhC
Confidence 999999999999999999999999997542 2233 44455559999
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecC
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHR 1132 (1192)
+.+.+.+.|.+|+|.++++|.+||||||||+||||||+++|++||||||||+||+++.+.+++.|++..+++|+|+|||+
T Consensus 134 L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd 213 (390)
T 3gd7_A 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213 (390)
T ss_dssp CHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSS
T ss_pred CHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988788999999999
Q ss_pred hhHHHhcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHH
Q psy13234 1133 LSTIIHADEILVMHAGEIVERGRHEELLERN-GVYAS 1168 (1192)
Q Consensus 1133 LSTI~~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~ 1168 (1192)
++.+..||||+||++|+|++.|+++|++++. ..|..
T Consensus 214 ~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 214 IEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp SGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 9999999999999999999999999999753 44433
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.2e-48 Score=421.10 Aligned_cols=222 Identities=30% Similarity=0.487 Sum_probs=200.7
Q ss_pred cccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++|++++|+. ++++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||
T Consensus 6 ~~~l~~~y~~~~~~vl~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------- 66 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGIT---FSIPEGAL---VAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------- 66 (237)
T ss_dssp EEEEEEESCTTSCCSEEEEE---EEECTTCE---EEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------
T ss_pred EEEEEEEeCCCCCceeeeeE---EEECCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------
Confidence 8899999964 467899999 99999999 999999999999999999999999999999999
Q ss_pred cEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
+|+||||+|.+|+.|++|||.++.. .++++. .++++.+++.+.+.
T Consensus 67 ~i~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~----------------------------------~~~~~~~~l~~~~~ 111 (237)
T 2cbz_A 67 SVAYVPQQAWIQNDSLRENILFGCQ-LEEPYY----------------------------------RSVIQACALLPDLE 111 (237)
T ss_dssp CEEEECSSCCCCSEEHHHHHHTTSC-CCTTHH----------------------------------HHHHHHTTCHHHHT
T ss_pred EEEEEcCCCcCCCcCHHHHhhCccc-cCHHHH----------------------------------HHHHHHHhhHHHHH
Confidence 3999999999999999999998742 122222 23347778888888
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHcCCceEEEEecChhH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN---RVCASRTTIIVAHRLST 1135 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~---~l~~grTvIvIAHRLST 1135 (1192)
.+|.|++|.+++++.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|. +..+++|+|+|||+++.
T Consensus 112 ~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 112 ILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp TSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred hccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 899999999999999999999999999999999999999999999999999999999984 44568999999999999
Q ss_pred HHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhc
Q psy13234 1136 IIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175 (1192)
Q Consensus 1136 I~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~ 1175 (1192)
+..||+|++|++|++++.|+++|+++..+.|++++..|..
T Consensus 192 ~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 231 (237)
T 2cbz_A 192 LPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYAS 231 (237)
T ss_dssp GGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHTCC
T ss_pred HHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHHHHHh
Confidence 9899999999999999999999999999999999988764
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.1e-47 Score=414.83 Aligned_cols=220 Identities=26% Similarity=0.400 Sum_probs=195.6
Q ss_pred ccccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh
Q psy13234 895 KIEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~ 973 (1192)
.++ ++|++++|+. ++++++++| +.+++|+. +||+||||||||||+++|+|+++|++|+|.+||
T Consensus 6 ~l~--~~~l~~~y~~~~~~il~~vs---l~i~~Ge~---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------- 69 (229)
T 2pze_A 6 EVV--MENVTAFWEEGGTPVLKDIN---FKIERGQL---LAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------- 69 (229)
T ss_dssp EEE--EEEEEECSSTTSCCSEEEEE---EEEETTCE---EEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--------
T ss_pred eEE--EEEEEEEeCCCCceeeeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--------
Confidence 456 8999999974 567999999 99999999 999999999999999999999999999999999
Q ss_pred HhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
+|+||||+|.+|++|++|||.++.. ..+++ +.++++.+++
T Consensus 70 -----~i~~v~q~~~~~~~tv~enl~~~~~-~~~~~----------------------------------~~~~~~~~~l 109 (229)
T 2pze_A 70 -----RISFCSQFSWIMPGTIKENIIFGVS-YDEYR----------------------------------YRSVIKACQL 109 (229)
T ss_dssp -----CEEEECSSCCCCSBCHHHHHHTTSC-CCHHH----------------------------------HHHHHHHTTC
T ss_pred -----EEEEEecCCcccCCCHHHHhhccCC-cChHH----------------------------------HHHHHHHhCc
Confidence 4999999999999999999998742 12222 2334477889
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHcCCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-NRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL-~~l~~grTvIvIAHR 1132 (1192)
.+.+..+|.+++|.+++++.+||||||||++||||++++|+++|||||||+||+++++.+.+.+ ++..+++|+|+|||+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~ 189 (229)
T 2pze_A 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 189 (229)
T ss_dssp HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCC
T ss_pred HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999974 555568999999999
Q ss_pred hhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1133 LSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1133 LSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
++.+..||+|++|++|++++.|+++++.++++.|.+++
T Consensus 190 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 227 (229)
T 2pze_A 190 MEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227 (229)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHHH
T ss_pred hHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHh
Confidence 99998899999999999999999999998777777765
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.2e-45 Score=409.67 Aligned_cols=224 Identities=28% Similarity=0.434 Sum_probs=190.1
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC--CCCh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQ 973 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~--~i~~ 973 (1192)
++ ++|++++|+.+.++++++| +++.+|+. +||+||||||||||+|+|.|+++|++|+|.+||+|+. ..+.
T Consensus 8 l~--i~~ls~~y~~~~~~L~~is---l~i~~Ge~---~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 8 LK--VEELNYNYSDGTHALKGIN---MNIKRGEV---TAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EE--EEEEEEECTTSCEEEEEEE---EEEETTSE---EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHH
T ss_pred EE--EEEEEEEECCCCeEEEeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccH
Confidence 55 8999999976667999999 99999999 9999999999999999999999999999999999994 3345
Q ss_pred HhhcccEEEEcCCC--ccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDT--VLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp--~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
..+|++||||||+| .+|+.|++|||.++.. ..++++. ++++.++++
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~l~ 129 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI------------------------------RKRVDNALK 129 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHH------------------------------HHHHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHH------------------------------HHHHHHHHH
Confidence 67899999999998 5889999999998632 1122222 234566677
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTI 1127 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvI 1127 (1192)
..++.+... ....+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|
T Consensus 130 ~~~L~~~~~-----------~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi 198 (275)
T 3gfo_A 130 RTGIEHLKD-----------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITII 198 (275)
T ss_dssp HTTCGGGTT-----------SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HcCCchhhc-----------CCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEE
Confidence 777755322 3345799999999999999999999999999999999999999999998875 389999
Q ss_pred EEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcCcHHHH
Q psy13234 1128 IVAHRLSTII-HADEILVMHAGEIVERGRHEELLERNGVYAS 1168 (1192)
Q Consensus 1128 vIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~ 1168 (1192)
+|||+++.+. .||+|++|++|++++.|+++|+++....+..
T Consensus 199 ~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~ 240 (275)
T 3gfo_A 199 IATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRK 240 (275)
T ss_dssp EEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHHHHHHH
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHH
Confidence 9999999986 4999999999999999999999876544443
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.2e-45 Score=396.47 Aligned_cols=216 Identities=22% Similarity=0.369 Sum_probs=182.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh-cc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL-R~ 978 (1192)
++|++++|.. +++++++| +.+.+|+. +||+||||||||||+|+|.|+++|++|+|.+||+++.+.+.... |+
T Consensus 9 ~~~l~~~y~~-~~vl~~vs---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 9 VQSLHVYYGA-IHAIKGID---LKVPRGQI---VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEETT-EEEEEEEE---EEEETTCE---EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEeEEEEECC-eeEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhC
Confidence 8999999964 56899999 99999998 99999999999999999999999999999999999998887665 55
Q ss_pred cEEEEcCCCccccc-cHHHHHhccc-cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 979 AIGVVPQDTVLFNN-SIKFNIQYAR-INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 979 ~Ig~VPQDp~LFnG-TIreNI~~G~-~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
+|+||||++.+|++ |++||+.++. +..++++.. +.+.++++..
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~------------------------------~~~~~~l~~~----- 126 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK------------------------------RDLEWIFSLF----- 126 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHH------------------------------HHHHHHHHHC-----
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHH------------------------------HHHHHHHHHc-----
Confidence 69999999999997 9999999864 111122221 2223333433
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLST 1135 (1192)
+ |++...+....+||||||||++||||++++|++||||||||+||+++.+.+.+.|++.. +++|+|+|||+++.
T Consensus 127 ----~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 127 ----P-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201 (240)
T ss_dssp ----H-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred ----c-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 2 23333455667899999999999999999999999999999999999999999998875 58999999999987
Q ss_pred H-HhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1136 I-IHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1136 I-~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+ ..||+|++|++|++++.|+++++.+.
T Consensus 202 ~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 202 ALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 6 56999999999999999999999864
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1e-44 Score=415.73 Aligned_cols=225 Identities=29% Similarity=0.438 Sum_probs=191.6
Q ss_pred ccccccccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 895 KIEENMEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
-++ ++|++++|+.+ .++++++| +.+.+|+. +||+||||||||||+|+|.|+++|++|+|.+||+|+...
T Consensus 24 mi~--v~~ls~~y~~~~~~~~aL~~vs---l~i~~Gei---~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~ 95 (366)
T 3tui_C 24 MIK--LSNITKVFHQGTRTIQALNNVS---LHVPAGQI---YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 95 (366)
T ss_dssp CEE--EEEEEEEEECSSSEEEEEEEEE---EEECTTCE---EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSC
T ss_pred eEE--EEeEEEEeCCCCCCeEEEEeeE---EEEcCCCE---EEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC
Confidence 356 99999999753 35799999 99999998 999999999999999999999999999999999999999
Q ss_pred ChHh---hcccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHH
Q psy13234 972 SQAS---LRQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 972 ~~~s---LR~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
+... +|++||||||++.||+. |++|||.++.. ..+.++ .++++.
T Consensus 96 ~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~------------------------------~~~~v~ 145 (366)
T 3tui_C 96 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE------------------------------VKRRVT 145 (366)
T ss_dssp CHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHH------------------------------HHHHHH
T ss_pred CHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHH------------------------------HHHHHH
Confidence 8765 47899999999999986 99999987621 112211 234566
Q ss_pred HHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--C
Q psy13234 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--S 1123 (1192)
Q Consensus 1046 ~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--g 1123 (1192)
++|+..++.+...+. ..+||||||||++|||||+.+|+|||||||||+||+++.+.|.+.|+++.+ |
T Consensus 146 ~lL~~vgL~~~~~~~-----------~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g 214 (366)
T 3tui_C 146 ELLSLVGLGDKHDSY-----------PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214 (366)
T ss_dssp HHHHHHTCGGGTTCC-----------TTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 777888876654333 357999999999999999999999999999999999999999999998743 7
Q ss_pred ceEEEEecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC-cHHHH
Q psy13234 1124 RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERN-GVYAS 1168 (1192)
Q Consensus 1124 rTvIvIAHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~ 1168 (1192)
+|+|+|||+++.+.. ||||++|++|+|++.|+++|+++.. ..|.+
T Consensus 215 ~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~~ 261 (366)
T 3tui_C 215 LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261 (366)
T ss_dssp CEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHHH
T ss_pred CEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHH
Confidence 999999999999865 9999999999999999999999753 34543
No 22
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.3e-45 Score=393.89 Aligned_cols=215 Identities=27% Similarity=0.426 Sum_probs=180.6
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL 976 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL 976 (1192)
++|++++|+.+ .++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||+|+.+++...+
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~is---l~i~~Ge~---~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVN---LNIKEGEF---VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE---EEECTTCE---EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEeCCCCcceeeEEeee---EEEcCCCE---EEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHH
Confidence 78999999753 35899999 99999999 99999999999999999999999999999999999999987764
Q ss_pred ----cccEEEEcCCCccccc-cHHHHHhcccc-----CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHH
Q psy13234 977 ----RQAIGVVPQDTVLFNN-SIKFNIQYARI-----NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046 (1192)
Q Consensus 977 ----R~~Ig~VPQDp~LFnG-TIreNI~~G~~-----~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~ 1046 (1192)
|++||||||+|.+|+. |++||+.++.. ..++++ ..+++.+
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~------------------------------~~~~~~~ 127 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE------------------------------RRKRALE 127 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHH------------------------------HHHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHH------------------------------HHHHHHH
Confidence 4579999999999987 99999987521 111111 1234555
Q ss_pred HHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--Cc
Q psy13234 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SR 1124 (1192)
Q Consensus 1047 AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--gr 1124 (1192)
+++..++.+.. .......||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+ ++
T Consensus 128 ~l~~~~l~~~~----------~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~ 197 (235)
T 3tif_A 128 CLKMAELEERF----------ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK 197 (235)
T ss_dssp HHHHTTCCGGG----------TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCChhh----------hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 66776664321 1244567999999999999999999999999999999999999999999998753 89
Q ss_pred eEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1125 TTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1125 TvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL 1160 (1192)
|+|+|||+++....||+|++|++|+|++.|+.+++.
T Consensus 198 tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 198 TVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp EEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred EEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 999999999988889999999999999999877754
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.9e-44 Score=395.65 Aligned_cols=215 Identities=26% Similarity=0.382 Sum_probs=185.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|. ++++++++| +++.+|+. +||+||||||||||+|+|.|+++|++|+|.+||+|+.+.+.+.+++.
T Consensus 14 ~~~l~~~~~-~~~vL~~vs---l~i~~Ge~---~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 14 ASHLHYHVQ-QQALINDVS---LHIASGEM---VAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp EEEEEEEET-TEEEEEEEE---EEEETTCE---EEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred EEeEEEEeC-CeeEEEeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 889999995 457899999 99999999 99999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcc-ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVL-FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~L-FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
++|+||++.+ |+.|++||+.++....+. +..++++.++++..++.+..
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~------------------------------~~~~~~~~~~l~~~~l~~~~- 135 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGG------------------------------SQDRQALQQVMAQTDCLALA- 135 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCS------------------------------TTHHHHHHHHHHHTTCSTTT-
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCc------------------------------HHHHHHHHHHHHHcCChhHh-
Confidence 9999999987 678999999987532111 11234455666777764432
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK------APQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 1130 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLr------dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIA 1130 (1192)
+.. ..+||||||||++|||||++ +|++||||||||+||+++.+.+.+.|+++.+ ++|+|+||
T Consensus 136 ------~~~----~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vt 205 (266)
T 4g1u_C 136 ------QRD----YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVL 205 (266)
T ss_dssp ------TSB----GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred ------cCC----cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 222 34799999999999999999 9999999999999999999999999988753 47999999
Q ss_pred cChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1131 HRLSTII-HADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1131 HRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+++.+. .||+|++|++|++++.|+++|++..
T Consensus 206 Hdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 206 HDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp SCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred cCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 9999986 5999999999999999999999864
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.1e-43 Score=391.60 Aligned_cols=218 Identities=31% Similarity=0.479 Sum_probs=185.7
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC--CCCh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQ 973 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~--~i~~ 973 (1192)
++ ++|++++|. ++++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||+|+. ..+.
T Consensus 25 l~--i~~l~~~y~-~~~vL~~vs---l~i~~Gei---~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 25 ID--VHQLKKSFG-SLEVLKGIN---VHIREGEV---VVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp EE--EEEEEEEET-TEEEEEEEE---EEECTTCE---EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCH
T ss_pred EE--EEeEEEEEC-CEEEEEeeE---EEEcCCCE---EEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccH
Confidence 56 999999995 356899999 99999998 9999999999999999999999999999999999985 3445
Q ss_pred HhhcccEEEEcCCCccccc-cHHHHHhccc-c--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDTVLFNN-SIKFNIQYAR-I--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~-~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~ 1049 (1192)
..+|++|+||||++.+|+. |++|||.++. . ..+.++ .++++.++++
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~l~ 145 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREK------------------------------AEAKAMELLD 145 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHH------------------------------HHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHH
Confidence 6778899999999999987 9999998752 1 111111 1344566677
Q ss_pred HcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEE
Q psy13234 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTII 1128 (1192)
Q Consensus 1050 ~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIv 1128 (1192)
..++.+.. .....+||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++. +++|+|+
T Consensus 146 ~~~L~~~~-----------~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~ 214 (263)
T 2olj_A 146 KVGLKDKA-----------HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 214 (263)
T ss_dssp HTTCGGGT-----------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HCCCchHh-----------cCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 77776542 23345799999999999999999999999999999999999999999998874 4799999
Q ss_pred EecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1129 VAHRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1129 IAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|||+++.+. .||+|++|++|++++.|+++|+++..
T Consensus 215 vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 215 VTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp ECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999986 59999999999999999999998653
No 25
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=5.8e-44 Score=399.01 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=179.0
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~ 973 (1192)
..++ ++|+++.+ +++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||
T Consensus 39 ~~l~--~~~l~~~~---~~vl~~is---l~i~~Ge~---~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------- 99 (290)
T 2bbs_A 39 DSLS--FSNFSLLG---TPVLKDIN---FKIERGQL---LAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------- 99 (290)
T ss_dssp -------------C---CCSEEEEE---EEECTTCE---EEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------
T ss_pred ceEE--EEEEEEcC---ceEEEeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------
Confidence 3466 88888863 56899999 99999998 999999999999999999999999999999998
Q ss_pred HhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
+|+||||++.+|++|++|||. +.. .+++. +.++++..++
T Consensus 100 -----~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~----------------------------------~~~~~~~~~l 138 (290)
T 2bbs_A 100 -----RISFCSQNSWIMPGTIKENII-GVS-YDEYR----------------------------------YRSVIKACQL 138 (290)
T ss_dssp -----CEEEECSSCCCCSSBHHHHHH-TTC-CCHHH----------------------------------HHHHHHHTTC
T ss_pred -----EEEEEeCCCccCcccHHHHhh-Ccc-cchHH----------------------------------HHHHHHHhCh
Confidence 499999999999999999998 531 12222 2234477889
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHcCCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-NRVCASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL-~~l~~grTvIvIAHR 1132 (1192)
.+.+..+|++++|.+++++.+||||||||++||||++++|+++|||||||+||+++++.+.+.+ ++..+++|+|+|||+
T Consensus 139 ~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd 218 (290)
T 2bbs_A 139 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218 (290)
T ss_dssp HHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCC
T ss_pred HHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999874 455568999999999
Q ss_pred hhHHHhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1133 LSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1133 LSTI~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
++.+..||+|++|++|++++.|+++|+++....|.+.+
T Consensus 219 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 256 (290)
T 2bbs_A 219 MEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKL 256 (290)
T ss_dssp HHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred HHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHHHH
Confidence 99998999999999999999999999987655665544
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-43 Score=387.12 Aligned_cols=217 Identities=27% Similarity=0.403 Sum_probs=186.2
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~ 974 (1192)
.++ ++|++++|. ++++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||+++.+ ...
T Consensus 15 ~l~--i~~l~~~y~-~~~vl~~vs---l~i~~Gei---~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~ 84 (256)
T 1vpl_A 15 AVV--VKDLRKRIG-KKEILKGIS---FEIEEGEI---FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPH 84 (256)
T ss_dssp CEE--EEEEEEEET-TEEEEEEEE---EEECTTCE---EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHH
T ss_pred eEE--EEEEEEEEC-CEEEEEeeE---EEEcCCcE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHH
Confidence 456 899999995 457899999 99999998 99999999999999999999999999999999999977 566
Q ss_pred hhcccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 975 SLRQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
.+|++||||||++.+|++ |++||+.++.. ..++++ .++++.++++..
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~ 134 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE------------------------------IEEMVERATEIA 134 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHH------------------------------HHHHHHHHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHH------------------------------HHHHHHHHHHHC
Confidence 788999999999999987 99999987521 111111 123456667777
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEe
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVA 1130 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIA 1130 (1192)
++.+... ....+||||||||++||||++++|++||||||||+||+++.+.+.+.|+++. +++|+|+||
T Consensus 135 gL~~~~~-----------~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivt 203 (256)
T 1vpl_A 135 GLGEKIK-----------DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 203 (256)
T ss_dssp CCGGGGG-----------SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCchHhc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 7765432 2345799999999999999999999999999999999999999999998875 479999999
Q ss_pred cChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1131 HRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1131 HRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
|+++.+.. ||+|++|++|++++.|+++|+.+.
T Consensus 204 Hd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 204 HNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp CCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999876 999999999999999999999753
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-43 Score=391.17 Aligned_cols=214 Identities=27% Similarity=0.445 Sum_probs=184.2
Q ss_pred cccceeeec-CC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh
Q psy13234 900 MEEDQFGFR-KG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 900 fenVsFsY~-~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s 975 (1192)
++|++++|+ .+ +++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||+++.+. .
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vs---l~i~~Ge~---~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~ 75 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVS---LVINEGEC---LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---E 75 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEE---EEECTTCE---EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---H
T ss_pred EEEEEEEecCCCccccceeeeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---H
Confidence 889999996 23 56899999 99999999 999999999999999999999999999999999998652 6
Q ss_pred hcccEEEEcCCC--ccccccHHHHHhccccC-CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 976 LRQAIGVVPQDT--VLFNNSIKFNIQYARIN-ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 976 LR~~Ig~VPQDp--~LFnGTIreNI~~G~~~-asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
+|++||||||+| .+++.|++|||.++... .++ +..++++.++++..+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~------------------------------~~~~~~~~~~l~~~g 125 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------------------------------RDPVPLVKKAMEFVG 125 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTT------------------------------SCSHHHHHHHHHHTT
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCH------------------------------HHHHHHHHHHHHHcC
Confidence 789999999996 57889999999986321 000 012345666778888
Q ss_pred hH--HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEE
Q psy13234 1053 IH--ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIV 1129 (1192)
Q Consensus 1053 Lh--d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvI 1129 (1192)
+. +...+.| .+||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++.. +++|+|+|
T Consensus 126 l~~~~~~~~~~-----------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~v 194 (266)
T 2yz2_A 126 LDFDSFKDRVP-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 194 (266)
T ss_dssp CCHHHHTTCCG-----------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCcccccCCh-----------hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 87 6654433 4799999999999999999999999999999999999999999999874 47999999
Q ss_pred ecChhHHHh-cCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1130 AHRLSTIIH-ADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1130 AHRLSTI~~-aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
||+++.+.. ||+|++|++|++++.|+++++++..
T Consensus 195 tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 195 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp CSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence 999999875 9999999999999999999998654
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-43 Score=387.82 Aligned_cols=216 Identities=26% Similarity=0.412 Sum_probs=183.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC---------
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--------- 970 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~--------- 970 (1192)
++|++++|. ++++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+||+|+..
T Consensus 9 i~~l~~~y~-~~~vl~~vs---l~i~~Ge~---~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 9 VIDLHKRYG-GHEVLKGVS---LQARAGDV---ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp EEEEEEEET-TEEEEEEEE---EEECTTCE---EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred EeeEEEEEC-CEEEEEeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence 899999995 356899999 99999999 99999999999999999999999999999999999862
Q ss_pred -CCh---HhhcccEEEEcCCCccccc-cHHHHHhccc-c--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHH
Q psy13234 971 -VSQ---ASLRQAIGVVPQDTVLFNN-SIKFNIQYAR-I--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042 (1192)
Q Consensus 971 -i~~---~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~-~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sde 1042 (1192)
++. ..+|++||||||++.+|+. |++|||.++. . ..+.++ .++
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~------------------------------~~~ 131 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD------------------------------ARE 131 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHH------------------------------HHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHH------------------------------HHH
Confidence 443 3568899999999999987 9999998752 0 111111 134
Q ss_pred HHHHHHHHcChHHH-HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q psy13234 1043 EVKEAATSADIHER-ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC 1121 (1192)
Q Consensus 1043 eI~~AL~~A~Lhd~-I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~ 1121 (1192)
++.++++..++.+. .. ....+||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.
T Consensus 132 ~~~~~l~~~~L~~~~~~-----------~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 132 RALKYLAKVGIDERAQG-----------KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp HHHHHHHHTTCCHHHHT-----------SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCchhhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 45667788888665 32 2345799999999999999999999999999999999999999999998875
Q ss_pred -CCceEEEEecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1122 -ASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1122 -~grTvIvIAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
+++|+|+|||+++.+. .||+|++|++|++++.|+++++++..
T Consensus 201 ~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 201 EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNP 244 (262)
T ss_dssp HTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 3799999999999986 59999999999999999999998653
No 29
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.3e-43 Score=387.14 Aligned_cols=229 Identities=21% Similarity=0.320 Sum_probs=181.2
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh-H
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-A 974 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~-~ 974 (1192)
++ ++|++++|.. +++++++| +.+.+|+. +||+||||||||||+|+|.|+++|++|+|.+||+|+.+.+. +
T Consensus 8 l~--i~~l~~~y~~-~~vl~~vs---l~i~~Ge~---~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 8 LR--TENIVKYFGE-FKALDGVS---ISVNKGDV---TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EE--EEEEEEEETT-EEEEEEEC---CEEETTCE---EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred EE--EeeeEEEECC-EeeEeeeE---EEEeCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH
Confidence 55 8999999954 56899999 99999999 99999999999999999999999999999999999988764 3
Q ss_pred hhcccEEEEcCCCcccc-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 975 SLRQAIGVVPQDTVLFN-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
..|++|+||||++.+|+ .|++||+.++...... ...... +. .... ... ...++++.++++..++
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~-~~~~~~-----~~--~~~~--~~~-----~~~~~~~~~~l~~~~l 143 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGE-SPLNSL-----FY--KKWI--PKE-----EEMVEKAFKILEFLKL 143 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTS-CHHHHH-----HH--CSSC--CCC-----HHHHHHHHHHHHHTTC
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhcc-Cccccc-----cc--cccc--CCH-----HHHHHHHHHHHHHcCC
Confidence 46788999999999987 5999999986321000 000000 00 0000 000 0012344555566555
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHR 1132 (1192)
.+ .......+||||||||++||||++.+|++||||||||+||+++.+.+.+.|++..+ ++|+|+|||+
T Consensus 144 ~~-----------~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 212 (257)
T 1g6h_A 144 SH-----------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212 (257)
T ss_dssp GG-----------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred ch-----------hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 43 23444568999999999999999999999999999999999999999999988754 7999999999
Q ss_pred hhHHH-hcCEEEEEeCCEEEEEcCHHHH
Q psy13234 1133 LSTII-HADEILVMHAGEIVERGRHEEL 1159 (1192)
Q Consensus 1133 LSTI~-~aDrIlVLe~G~IvE~GtheEL 1159 (1192)
++.+. .||+|++|++|++++.|+++|+
T Consensus 213 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (257)
T 1g6h_A 213 LDIVLNYIDHLYVMFNGQIIAEGRGEEE 240 (257)
T ss_dssp CSTTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred HHHHHHhCCEEEEEECCEEEEEeCHHHh
Confidence 99875 6999999999999999999993
No 30
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.1e-43 Score=382.25 Aligned_cols=209 Identities=22% Similarity=0.353 Sum_probs=177.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh---h
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---L 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s---L 976 (1192)
++|++++|.. +++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+|+...+... +
T Consensus 7 ~~~l~~~y~~-~~~l~~vs---l~i~~Ge~---~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 7 AENIKKVIRG-YEILKGIS---LSVKKGEF---VSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EEEEEEEETT-EEEEEEEE---EEEETTCE---EEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHH
T ss_pred EEeEEEEECC-EeeEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHH
Confidence 8899999964 56899999 99999998 9999999999999999999999999999999999998887643 4
Q ss_pred c-ccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 977 R-QAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 977 R-~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
| ++|+||||++.+|+. |++||+.++.. ..+.+ ..++++.++++..+
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~ 129 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK------------------------------EAKERGEYLLSELG 129 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHH------------------------------HHHHHHHHHHHHTT
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHH------------------------------HHHHHHHHHHHHcC
Confidence 4 789999999999874 99999987521 00111 11344566667776
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEec
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAH 1131 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAH 1131 (1192)
+.+.. .....+||||||||++||||++.+|+++|||||||+||+++.+.+.+.|+++. +++|+|+|||
T Consensus 130 l~~~~-----------~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 198 (224)
T 2pcj_A 130 LGDKL-----------SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198 (224)
T ss_dssp CTTCT-----------TCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred Cchhh-----------hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 65432 22345799999999999999999999999999999999999999999998874 4799999999
Q ss_pred ChhHHHhcCEEEEEeCCEEEEEcCH
Q psy13234 1132 RLSTIIHADEILVMHAGEIVERGRH 1156 (1192)
Q Consensus 1132 RLSTI~~aDrIlVLe~G~IvE~Gth 1156 (1192)
+++.+..||+|++|++|++++.|+.
T Consensus 199 d~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 199 ERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp CHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred CHHHHHhCCEEEEEECCEEEEEeee
Confidence 9998888999999999999999863
No 31
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.2e-43 Score=404.50 Aligned_cols=219 Identities=28% Similarity=0.448 Sum_probs=187.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|. +..+++++| +.+.+|+. ++|+||||||||||+|+|.|+++|++|+|.+||+|+...+.. ++.
T Consensus 6 ~~~l~~~yg-~~~~L~~vs---l~i~~Ge~---~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ 76 (381)
T 3rlf_A 6 LQNVTKAWG-EVVVSKDIN---LDIHEGEF---VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERG 76 (381)
T ss_dssp EEEEEEEET-TEEEEEEEE---EEECTTCE---EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSC
T ss_pred EEeEEEEEC-CEEEEeeeE---EEECCCCE---EEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCC
Confidence 889999995 456899999 99999988 999999999999999999999999999999999999988765 478
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
||||+|++.||+. |++|||.|+.. ..++++ .++++.++++..++.+.
T Consensus 77 ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~------------------------------~~~~v~~~l~~~~L~~~ 126 (381)
T 3rlf_A 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV------------------------------INQRVNQVAEVLQLAHL 126 (381)
T ss_dssp EEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH------------------------------HHHHHHHHHHHTTCGGG
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHcCCchh
Confidence 9999999999976 99999998631 112222 23456677788887665
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+. ..+||||||||+||||||+++|++||||||||+||+++.+.+.+.|+++.+ +.|+|+|||+++
T Consensus 127 ~~r~-----------p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 127 LDRK-----------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp TTCC-----------GGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred hcCC-----------hhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4333 347999999999999999999999999999999999999999999988753 799999999998
Q ss_pred HHH-hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHH
Q psy13234 1135 TII-HADEILVMHAGEIVERGRHEELLERN-GVYAS 1168 (1192)
Q Consensus 1135 TI~-~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~ 1168 (1192)
.+. -||||+||++|+|++.|+++|+.... ..|..
T Consensus 196 ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~ 231 (381)
T 3rlf_A 196 EAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231 (381)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred HHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHH
Confidence 875 59999999999999999999998753 44443
No 32
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.1e-43 Score=401.96 Aligned_cols=222 Identities=27% Similarity=0.430 Sum_probs=184.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC--CChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~--i~~~sLR 977 (1192)
++|++++|. +.++++++| +.+.+|+. ++|+||||||||||+|+|.|+.+|++|+|.+||+|+.+ .+....+
T Consensus 7 i~~ls~~y~-~~~~L~~vs---l~i~~Ge~---~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 7 IGHLSKSFQ-NTPVLNDIS---LSLDPGEI---LFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp EEEEEEEET-TEEEEEEEE---EEECTTCE---EEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGG
T ss_pred EEeEEEEEC-CEEEEEeeE---EEEcCCCE---EEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhh
Confidence 889999995 456899999 99999998 99999999999999999999999999999999999933 2234457
Q ss_pred ccEEEEcCCCccccc-cHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 978 QAIGVVPQDTVLFNN-SIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFnG-TIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
++||||+|++.||+. |++|||.|+... .+.++ .++++.++++..++.
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~------------------------------~~~~v~~~l~~~gL~ 129 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQ------------------------------ERQRIEAMLELTGIS 129 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHH------------------------------HHHHHHHHHHHHTCG
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHH------------------------------HHHHHHHHHHHcCCc
Confidence 889999999999975 999999987421 11111 234566677888876
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecC
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHR 1132 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHR 1132 (1192)
+...+. ..+||||||||+||||||+.+|++||||||||+||+.+.+.+++.|.+.. .++|+|+|||+
T Consensus 130 ~~~~r~-----------~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd 198 (359)
T 3fvq_A 130 ELAGRY-----------PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198 (359)
T ss_dssp GGTTSC-----------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hHhcCC-----------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 654333 35799999999999999999999999999999999999999998776653 47999999999
Q ss_pred hhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC-cHHHHH
Q psy13234 1133 LSTII-HADEILVMHAGEIVERGRHEELLERN-GVYASM 1169 (1192)
Q Consensus 1133 LSTI~-~aDrIlVLe~G~IvE~GtheELL~~~-G~Ya~L 1169 (1192)
++.+. -||||+||++|+|++.|+++|+.++. ..|...
T Consensus 199 ~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a~ 237 (359)
T 3fvq_A 199 REEALQYADRIAVMKQGRILQTASPHELYRQPADLDAAL 237 (359)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHHH
T ss_pred HHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHHH
Confidence 99875 59999999999999999999998754 344433
No 33
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.2e-43 Score=399.29 Aligned_cols=218 Identities=28% Similarity=0.486 Sum_probs=187.0
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~ 974 (1192)
.++ ++|++++|+.++++++++| +.+.+|+. ++|+||||||||||+|+|.|+++|++|+|.+||+|+.+.+.
T Consensus 14 ~l~--~~~l~~~y~g~~~vl~~vs---l~i~~Ge~---~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~- 84 (355)
T 1z47_A 14 TIE--FVGVEKIYPGGARSVRGVS---FQIREGEM---VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP- 84 (355)
T ss_dssp EEE--EEEEEECCTTSTTCEEEEE---EEEETTCE---EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-
T ss_pred eEE--EEEEEEEEcCCCEEEeeeE---EEECCCCE---EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh-
Confidence 355 8999999944457899999 99999998 99999999999999999999999999999999999987654
Q ss_pred hhcccEEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 975 SLRQAIGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
.|++||||||++.||+. |++|||.|+.. ..+.++ .++++.++++..
T Consensus 85 -~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~------------------------------~~~~v~~~l~~~ 133 (355)
T 1z47_A 85 -QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE------------------------------MDARVRELLRFM 133 (355)
T ss_dssp -GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH------------------------------HHHHHHHHHHHT
T ss_pred -hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHc
Confidence 47889999999999985 99999998631 111111 134566777888
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEE
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV 1129 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvI 1129 (1192)
++.+...+.| .+||||||||+||||||+.+|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|
T Consensus 134 gL~~~~~r~~-----------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v 202 (355)
T 1z47_A 134 RLESYANRFP-----------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFV 202 (355)
T ss_dssp TCGGGTTSCG-----------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CChhHhcCCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 8876544433 47999999999999999999999999999999999999999999988754 7999999
Q ss_pred ecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1130 AHRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1130 AHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
||+++.+. -||+|++|++|+|++.|+++|+.++.
T Consensus 203 THd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 203 THDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp CSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999875 59999999999999999999998753
No 34
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-43 Score=381.54 Aligned_cols=211 Identities=32% Similarity=0.465 Sum_probs=178.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|.. .++++| +.+.+ +. +||+||||||||||+++|.|+++|++|+|.+||+++.+.+ ..|++
T Consensus 4 ~~~l~~~y~~---~l~~is---l~i~~-e~---~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~ 71 (240)
T 2onk_A 4 KVRAEKRLGN---FRLNVD---FEMGR-DY---CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRG 71 (240)
T ss_dssp EEEEEEEETT---EEEEEE---EEECS-SE---EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSC
T ss_pred EEEEEEEeCC---EEeeeE---EEECC-EE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCc
Confidence 7899999953 488998 99999 88 9999999999999999999999999999999999997643 45789
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
||||||++.+|+. |++||+.++...... +..++++.++++..++.+...
T Consensus 72 i~~v~q~~~l~~~ltv~enl~~~~~~~~~------------------------------~~~~~~~~~~l~~~~l~~~~~ 121 (240)
T 2onk_A 72 IGFVPQDYALFPHLSVYRNIAYGLRNVER------------------------------VERDRRVREMAEKLGIAHLLD 121 (240)
T ss_dssp CBCCCSSCCCCTTSCHHHHHHTTCTTSCH------------------------------HHHHHHHHHHHHTTTCTTTTT
T ss_pred EEEEcCCCccCCCCcHHHHHHHHHHHcCC------------------------------chHHHHHHHHHHHcCCHHHhc
Confidence 9999999999987 999999986321100 001344556667777654322
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI 1136 (1192)
....+||||||||++||||++++|+++|||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++.+
T Consensus 122 -----------~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~ 190 (240)
T 2onk_A 122 -----------RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190 (240)
T ss_dssp -----------CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH
T ss_pred -----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22347999999999999999999999999999999999999999999988753 79999999999976
Q ss_pred -HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1137 -IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1137 -~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
..||+|++|++|++++.|+++|+++..
T Consensus 191 ~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 191 AMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 469999999999999999999998654
No 35
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.3e-43 Score=399.90 Aligned_cols=214 Identities=30% Similarity=0.484 Sum_probs=184.1
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|. ++++++++| +.+.+|+. ++|+||||||||||+|+|.|+++|++|+|.+||+|+.+.+.. +++
T Consensus 6 ~~~l~~~y~-~~~vl~~vs---l~i~~Ge~---~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ 76 (362)
T 2it1_A 6 LENIVKKFG-NFTALNNIN---LKIKDGEF---MALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76 (362)
T ss_dssp EEEEEEESS-SSEEEEEEE---EEECTTCE---EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTT
T ss_pred EEeEEEEEC-CEEEEEeeE---EEECCCCE---EEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCc
Confidence 889999995 356899999 99999988 999999999999999999999999999999999999887754 578
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
||||||++.||+. |++|||.|+.. ..+.++ .++++.++++..++.+.
T Consensus 77 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~------------------------------~~~~v~~~l~~~~L~~~ 126 (362)
T 2it1_A 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREE------------------------------IDKKVREVAKMLHIDKL 126 (362)
T ss_dssp EEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH------------------------------HHHHHHHHHHHTTCTTC
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHHHcCCchH
Confidence 9999999999986 99999998631 111111 13456667788877654
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+. ..+||||||||+||||||+++|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++
T Consensus 127 ~~r~-----------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 127 LNRY-----------PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp TTCC-----------GGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred hhCC-----------hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 4333 347999999999999999999999999999999999999999999988754 799999999999
Q ss_pred HH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1135 TI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1135 TI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 196 ~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 196 EALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 86 569999999999999999999998754
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.8e-43 Score=382.43 Aligned_cols=213 Identities=22% Similarity=0.339 Sum_probs=183.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++ ++++++| +.+.+|+. ++|+||||||||||+++|.|+++|+ |+|.+||+++.+++...+|++
T Consensus 7 ~~~l~~~-----~vl~~vs---l~i~~Ge~---~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~ 74 (249)
T 2qi9_C 7 LQDVAES-----TRLGPLS---GEVRAGEI---LHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALH 74 (249)
T ss_dssp EEEEEET-----TTEEEEE---EEEETTCE---EEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHH
T ss_pred EEceEEE-----EEEeeeE---EEEcCCCE---EEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhce
Confidence 7777776 5889999 99999998 9999999999999999999999999 999999999999988899999
Q ss_pred EEEEcCCCccccc-cHHHHHhcccc-CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARI-NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~-~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
|+||||++.+|.+ |++||+.++.. ..++ +++.++++..++.+..
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~l~~~~l~~~~ 120 (249)
T 2qi9_C 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRT----------------------------------ELLNDVAGALALDDKL 120 (249)
T ss_dssp EEEECSCCCCCTTCBHHHHHHTTCSSTTCH----------------------------------HHHHHHHHHTTCGGGT
T ss_pred EEEECCCCccCCCCcHHHHHHHhhccCCcH----------------------------------HHHHHHHHHcCChhHh
Confidence 9999999999875 99999998641 1112 3344555777775543
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEE
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQ-------IVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIV 1129 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~-------ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvI 1129 (1192)
.....+||||||||++||||++++|+ +||||||||+||+++.+.+.+.|++.. +++|+|+|
T Consensus 121 -----------~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 189 (249)
T 2qi9_C 121 -----------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189 (249)
T ss_dssp -----------TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----------cCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 23456899999999999999999999 999999999999999999999999874 47999999
Q ss_pred ecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1130 AHRLSTI-IHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1130 AHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
||+++.+ ..||+|++|++|++++.|+++|+.+.+.. .+.+
T Consensus 190 tHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~-~~~~ 230 (249)
T 2qi9_C 190 SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL-AQAY 230 (249)
T ss_dssp CSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSCHHHH-HHHH
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChhH-HHHh
Confidence 9999998 57999999999999999999999763333 4444
No 37
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-42 Score=397.29 Aligned_cols=214 Identities=26% Similarity=0.423 Sum_probs=185.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|. ++.+++++| +.+.+|+. ++|+||||||||||+|+|.|+++|++|+|.+||+|+.+.+.. +++
T Consensus 6 ~~~l~~~y~-~~~vl~~vs---l~i~~Ge~---~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ 76 (359)
T 2yyz_A 6 VVNLKKYFG-KVKAVDGVS---FEVKDGEF---VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YRE 76 (359)
T ss_dssp EEEEEEEET-TEEEEEEEE---EEECTTCE---EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTT
T ss_pred EEEEEEEEC-CEEEEeeeE---EEEcCCCE---EEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCc
Confidence 889999995 356889999 99999998 999999999999999999999999999999999999887754 678
Q ss_pred EEEEcCCCccccc-cHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
||||||++.+|+. |++|||.|+... .+.+ ..++++.++++..++.+.
T Consensus 77 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~------------------------------~~~~~v~~~l~~~~L~~~ 126 (359)
T 2yyz_A 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKD------------------------------EVEKRVVEIARKLLIDNL 126 (359)
T ss_dssp EEEECSSCCCCTTSCHHHHHHGGGSSSCSHHH------------------------------HTTHHHHHHHHHTTCGGG
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHhcCCCHH------------------------------HHHHHHHHHHHHcCCchH
Confidence 9999999999975 999999987421 1111 113456677788888766
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLS 1134 (1192)
..+.| .+||||||||+||||||+++|++||||||||+||+++.+.+.+.|+++.+ +.|+|+|||+++
T Consensus 127 ~~r~~-----------~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 127 LDRKP-----------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp TTSCG-----------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred hcCCh-----------hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 54443 47999999999999999999999999999999999999999999988754 799999999999
Q ss_pred HH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1135 TI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1135 TI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 196 ~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 196 EAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 87 569999999999999999999998754
No 38
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-42 Score=397.96 Aligned_cols=216 Identities=30% Similarity=0.463 Sum_probs=184.7
Q ss_pred cccceeeecCCCC--ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC---hH
Q psy13234 900 MEEDQFGFRKGKG--TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QA 974 (1192)
Q Consensus 900 fenVsFsY~~~~~--vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~---~~ 974 (1192)
++|++++|.. ++ +++++| +.+.+|+. ++|+||||||||||+|+|.|+++|++|+|.+||+|+.+.+ ..
T Consensus 6 i~~l~~~y~~-~~~~vl~~vs---l~i~~Ge~---~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 6 VKNVSKVFKK-GKVVALDNVN---INIENGER---FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp EEEEEEEEGG-GTEEEEEEEE---EEECTTCE---EEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEeEEEEECC-EeeeeEeceE---EEECCCCE---EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCC
Confidence 8899999964 45 899999 99999998 9999999999999999999999999999999999987621 33
Q ss_pred hhcccEEEEcCCCccccc-cHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc
Q psy13234 975 SLRQAIGVVPQDTVLFNN-SIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A 1051 (1192)
..|++||||||++.||+. |++|||.|+... .+.++ .++++.++++..
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~------------------------------~~~~v~~~l~~~ 128 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE------------------------------IRKRVEEVAKIL 128 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHH------------------------------HHHHHHHHHHHT
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHHc
Confidence 457899999999999986 999999987421 11111 134566777888
Q ss_pred ChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEE
Q psy13234 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV 1129 (1192)
Q Consensus 1052 ~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvI 1129 (1192)
++.+...+.| .+||||||||+||||||+++|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|
T Consensus 129 ~L~~~~~~~~-----------~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v 197 (353)
T 1oxx_K 129 DIHHVLNHFP-----------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVV 197 (353)
T ss_dssp TCGGGTTSCG-----------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEE
T ss_pred CCchHhcCCh-----------hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 8876544433 47999999999999999999999999999999999999999999988753 7999999
Q ss_pred ecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1130 AHRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1130 AHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
||+++.+. .||+|++|++|+|++.|+++|++++.
T Consensus 198 THd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp ESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999875 59999999999999999999998754
No 39
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.8e-43 Score=389.49 Aligned_cols=223 Identities=25% Similarity=0.334 Sum_probs=184.1
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC--CCCh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQ 973 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~--~i~~ 973 (1192)
++ ++|++++|.. +++++++| +.+.+|+. +||+||||||||||+|+|.|+++|++|+|.+||+++. ..+.
T Consensus 22 l~--~~~l~~~y~~-~~vL~~is---l~i~~Ge~---~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 22 IQ--LDQIGRMKQG-KTILKKIS---WQIAKGDK---WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EE--EEEEEEEETT-EEEEEEEE---EEEETTCE---EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCH
T ss_pred EE--EEeEEEEECC-EEEEEeee---EEEcCCCE---EEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCH
Confidence 56 9999999964 56899999 99999999 9999999999999999999999999999999999998 7778
Q ss_pred HhhcccEEEEcCCCcc-ccc--cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDTVL-FNN--SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~L-FnG--TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
..+|++|+||||++.+ |+. |++|||.++..... .+.. .. . +..++++.++++.
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~--~~~~---------------~~-~------~~~~~~~~~~l~~ 148 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI--GVYQ---------------DI-D------DEIRNEAHQLLKL 148 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC--------------------------C-C------HHHHHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcc--cccc---------------CC-c------HHHHHHHHHHHHH
Confidence 8899999999999875 555 99999998631000 0000 00 0 0113445666777
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceE--E
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTT--I 1127 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTv--I 1127 (1192)
.++.+.. .....+||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+ ++|+ |
T Consensus 149 ~gl~~~~-----------~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~i 217 (279)
T 2ihy_A 149 VGMSAKA-----------QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI 217 (279)
T ss_dssp TTCGGGT-----------TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred cCChhHh-----------cCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 7765432 233457999999999999999999999999999999999999999999988754 7999 9
Q ss_pred EEecChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1128 IVAHRLSTI-IHADEILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1128 vIAHRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+|||+++.+ ..||+|++|++|++++.|+++|+.+.
T Consensus 218 ivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 253 (279)
T 2ihy_A 218 YVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253 (279)
T ss_dssp EEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCSH
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcc
Confidence 999999987 46999999999999999999998754
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.4e-42 Score=396.57 Aligned_cols=212 Identities=29% Similarity=0.466 Sum_probs=181.4
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|.. + +++++| +.+.+|+. ++|+||||||||||+|+|.|+++|++|+|.+||+|+.+.+. .|++
T Consensus 4 ~~~l~~~y~~-~-~l~~vs---l~i~~Ge~---~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ 73 (348)
T 3d31_A 4 IESLSRKWKN-F-SLDNLS---LKVESGEY---FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHD 73 (348)
T ss_dssp EEEEEEECSS-C-EEEEEE---EEECTTCE---EEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHT
T ss_pred EEEEEEEECC-E-EEeeeE---EEEcCCCE---EEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCc
Confidence 7899999964 4 899999 99999998 99999999999999999999999999999999999987654 4788
Q ss_pred EEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
||||||++.||+. |++|||.|+... . . ...++++.++++..++.+...
T Consensus 74 ig~v~Q~~~l~~~ltv~enl~~~~~~---------~----------~------------~~~~~~v~~~l~~~~L~~~~~ 122 (348)
T 3d31_A 74 IAFVYQNYSLFPHMNVKKNLEFGMRM---------K----------K------------IKDPKRVLDTARDLKIEHLLD 122 (348)
T ss_dssp CEEECTTCCCCTTSCHHHHHHHHHHH---------H----------C------------CCCHHHHHHHHHHTTCTTTTT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHH---------c----------C------------CCHHHHHHHHHHHcCCchHhc
Confidence 9999999999987 999999986310 0 0 000144556667777765433
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI 1136 (1192)
+. ..+||||||||+||||||+++|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++.+
T Consensus 123 ~~-----------~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~ 191 (348)
T 3d31_A 123 RN-----------PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191 (348)
T ss_dssp SC-----------GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CC-----------hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 32 347999999999999999999999999999999999999999999988753 79999999999876
Q ss_pred -HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1137 -IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1137 -~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
..||+|++|++|+|++.|+++|+.++.
T Consensus 192 ~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 192 RIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp HHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 569999999999999999999998653
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.8e-42 Score=397.18 Aligned_cols=216 Identities=25% Similarity=0.442 Sum_probs=180.9
Q ss_pred cccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHh
Q psy13234 896 IEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 975 (1192)
Q Consensus 896 I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~s 975 (1192)
++ ++|++++|.. +.+++++| +.+.+|+. ++|+||||||||||+|+|.|+++|++|+|.+||+++.+.+..
T Consensus 12 l~--~~~l~~~y~~-~~vl~~vs---l~i~~Ge~---~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~- 81 (372)
T 1v43_A 12 VK--LENLTKRFGN-FTAVNKLN---LTIKDGEF---LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK- 81 (372)
T ss_dssp EE--EEEEEEEETT-EEEEEEEE---EEECTTCE---EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG-
T ss_pred EE--EEEEEEEECC-EEEEeeeE---EEECCCCE---EEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh-
Confidence 55 8999999953 56899999 99999988 999999999999999999999999999999999999887754
Q ss_pred hcccEEEEcCCCccccc-cHHHHHhccccC--CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 976 LRQAIGVVPQDTVLFNN-SIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 976 LR~~Ig~VPQDp~LFnG-TIreNI~~G~~~--asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
+++||||||++.||+. |++|||.|+... .+.++ .++++.++++..+
T Consensus 82 -~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~------------------------------~~~~v~~~l~~~~ 130 (372)
T 1v43_A 82 -DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE------------------------------IDKRVRWAAELLQ 130 (372)
T ss_dssp -GGTEEEEEC------CCCHHHHHHTTCC--CCCHHH------------------------------HHHHHHHHHHHTT
T ss_pred -hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHHHcC
Confidence 5789999999999975 999999987421 12211 1345666778888
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 1130 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIA 1130 (1192)
+.+...+.| .+||||||||+||||||+++|++||||||||+||+++.+.+.+.|+++.+ +.|+|+||
T Consensus 131 L~~~~~r~~-----------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 199 (372)
T 1v43_A 131 IEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199 (372)
T ss_dssp CGGGTTSCT-----------TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ChhHhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 876654443 47999999999999999999999999999999999999999999988754 79999999
Q ss_pred cChhHH-HhcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1131 HRLSTI-IHADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1131 HRLSTI-~~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 200 Hd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 200 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp SCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999987 569999999999999999999998753
No 42
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.3e-42 Score=395.88 Aligned_cols=214 Identities=25% Similarity=0.414 Sum_probs=183.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC------CCh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT------VSQ 973 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~------i~~ 973 (1192)
++|++++|. ++++++++| +.+.+|+. ++|+||||||||||+|+|.|+.+|++|+|.+||+|+.+ .+.
T Consensus 6 ~~~l~~~y~-~~~vl~~vs---l~i~~Ge~---~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 6 LVDVWKVFG-EVTAVREMS---LEVKDGEF---MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEET-TEEEEEEEE---EEEETTCE---EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred EEeEEEEEC-CEEEEeeeE---EEEcCCCE---EEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH
Confidence 889999995 356899999 99999998 99999999999999999999999999999999999876 544
Q ss_pred HhhcccEEEEcCCCcccc-ccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 974 ASLRQAIGVVPQDTVLFN-NSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
.+++||||||++.||+ -|++|||.|+.. ..+.++ .++++.++++.
T Consensus 79 --~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~------------------------------~~~~v~~~l~~ 126 (372)
T 1g29_1 79 --KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE------------------------------IDQRVREVAEL 126 (372)
T ss_dssp --GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHH------------------------------HHHHHHHHHHH
T ss_pred --hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH------------------------------HHHHHHHHHHH
Confidence 3678999999999997 599999998631 111111 13455667788
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEE
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTII 1128 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIv 1128 (1192)
.++.+...+. ..+||||||||+||||||+.+|++||||||||+||+++.+.+.+.|+++.+ +.|+|+
T Consensus 127 ~~L~~~~~r~-----------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 195 (372)
T 1g29_1 127 LGLTELLNRK-----------PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195 (372)
T ss_dssp HTCGGGTTCC-----------GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCchHhcCC-----------cccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8876654333 347999999999999999999999999999999999999999999988753 799999
Q ss_pred EecChhHHH-hcCEEEEEeCCEEEEEcCHHHHHhcC
Q psy13234 1129 VAHRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1129 IAHRLSTI~-~aDrIlVLe~G~IvE~GtheELL~~~ 1163 (1192)
|||+++.+. .||+|++|++|+|++.|+++|++++.
T Consensus 196 vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 231 (372)
T 1g29_1 196 VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231 (372)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred ECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCc
Confidence 999999875 69999999999999999999998753
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3e-42 Score=376.94 Aligned_cols=217 Identities=24% Similarity=0.312 Sum_probs=172.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCeecCCCChHhh-
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVSQASL- 976 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl--ydp~sGsI~IDG~DI~~i~~~sL- 976 (1192)
++|++++|.. +++++++| +.+.+|+. +||+||||||||||+++|.|+ ++|++|+|.+||+|+.+.+....
T Consensus 6 ~~~l~~~y~~-~~vl~~vs---l~i~~Ge~---~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~ 78 (250)
T 2d2e_A 6 IRDLWASIDG-ETILKGVN---LVVPKGEV---HALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERA 78 (250)
T ss_dssp EEEEEEEETT-EEEEEEEE---EEEETTCE---EEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHH
T ss_pred EEeEEEEECC-EEEEeceE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHH
Confidence 8899999964 57899999 99999999 999999999999999999999 89999999999999998887665
Q ss_pred cccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH-
Q psy13234 977 RQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH- 1054 (1192)
Q Consensus 977 R~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh- 1054 (1192)
|+.++||||+|.+|++ |++||+.++... .. + .... ....++++.++++..++.
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~--------~~---~---------~~~~-----~~~~~~~~~~~l~~~gl~~ 133 (250)
T 2d2e_A 79 RKGLFLAFQYPVEVPGVTIANFLRLALQA--------KL---G---------REVG-----VAEFWTKVKKALELLDWDE 133 (250)
T ss_dssp HTTBCCCCCCCC-CCSCBHHHHHHHHHHH--------HH---T---------SCCC-----HHHHHHHHHHHHHHHTCCG
T ss_pred hCcEEEeccCCccccCCCHHHHHHHHHHh--------hc---c---------ccCC-----HHHHHHHHHHHHHHcCCCh
Confidence 5569999999999986 999999875210 00 0 0000 000123455666766662
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecCh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 1133 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRL 1133 (1192)
+. .+.++++ +||||||||++|||||+++|++||||||||+||+++.+.+.+.|++..+ ++|+|+|||++
T Consensus 134 ~~-------~~~~~~~---~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 203 (250)
T 2d2e_A 134 SY-------LSRYLNE---GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203 (250)
T ss_dssp GG-------GGSBTTC---C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS
T ss_pred hH-------hcCCccc---CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 22 2333332 3999999999999999999999999999999999999999999998854 79999999999
Q ss_pred hHHHh--cCEEEEEeCCEEEEEcCHHH
Q psy13234 1134 STIIH--ADEILVMHAGEIVERGRHEE 1158 (1192)
Q Consensus 1134 STI~~--aDrIlVLe~G~IvE~GtheE 1158 (1192)
+.+.. ||+|++|++|++++.|++++
T Consensus 204 ~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 204 RILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp GGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99886 59999999999999999983
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.9e-42 Score=379.72 Aligned_cols=227 Identities=22% Similarity=0.285 Sum_probs=179.7
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCeecCCCC
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVS 972 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl--ydp~sGsI~IDG~DI~~i~ 972 (1192)
-++ ++|++++|. ++++++++| +.+.+|+. +||+||||||||||+|+|.|+ ++|++|+|.+||+|+.+.+
T Consensus 20 ~l~--~~~l~~~y~-~~~vl~~vs---l~i~~Ge~---~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 20 MLS--IKDLHVSVE-DKAILRGLS---LDVHPGEV---HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp CEE--EEEEEEEET-TEEEEEEEE---EEECTTCE---EEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC
T ss_pred eEE--EEeEEEEEC-CEEEEEeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC
Confidence 356 999999995 457899999 99999998 999999999999999999999 6799999999999998887
Q ss_pred hHhh-cccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH
Q psy13234 973 QASL-RQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050 (1192)
Q Consensus 973 ~~sL-R~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~ 1050 (1192)
.... |+.|+||||+|.+|++ |++||+.++.. +..... ..+ .... ...++++.++++.
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~-----~~~~~~----------~~~-~~~~-----~~~~~~~~~~l~~ 149 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALN-----AVRSYR----------GQE-TLDR-----FDFQDLMEEKIAL 149 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHH-----HHHHGG----------GCC-CCCH-----HHHHHHHHHHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHH-----hhhhhh----------ccc-cCCH-----HHHHHHHHHHHHH
Confidence 7665 4569999999999986 89999975420 000000 000 0000 0012345566666
Q ss_pred cChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEE
Q psy13234 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIV 1129 (1192)
Q Consensus 1051 A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvI 1129 (1192)
.++.+. -.+..++ .+||||||||++|||||+++|+|||||||||+||+++.+.+.+.|+++. +++|+|+|
T Consensus 150 ~gl~~~------~~~~~~~---~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 150 LKMPED------LLTRSVN---VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220 (267)
T ss_dssp TTCCTT------TTTSBTT---TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred cCCChh------HhcCCcc---cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 555311 1122222 2599999999999999999999999999999999999999999999875 47999999
Q ss_pred ecChhHHHh--cCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1130 AHRLSTIIH--ADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1130 AHRLSTI~~--aDrIlVLe~G~IvE~GtheELL 1160 (1192)
||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 221 tHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 221 THYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp CSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred eeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 999999876 8999999999999999999875
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-41 Score=375.61 Aligned_cols=205 Identities=18% Similarity=0.257 Sum_probs=176.0
Q ss_pred cccceeeecCC---CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhh
Q psy13234 900 MEEDQFGFRKG---KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL 976 (1192)
Q Consensus 900 fenVsFsY~~~---~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sL 976 (1192)
++|++++|+.+ +++++++| +.+. |+. ++|+||||||||||+|+|.|++ |++|+|.+||+++.+. ..
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vs---l~i~-Ge~---~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~- 72 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENIN---LEVN-GEK---VIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN- 72 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE---EEEC-SSE---EEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-
T ss_pred EEEEEEEeCCCCccceeEEeee---EEEC-CEE---EEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-
Confidence 78999999642 56899999 9999 888 9999999999999999999999 9999999999998765 34
Q ss_pred cccEE-EEcCCCccccccHHHHHhcccc--CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 977 RQAIG-VVPQDTVLFNNSIKFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 977 R~~Ig-~VPQDp~LFnGTIreNI~~G~~--~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
|++|+ ||||++.+ +.|++||+.++.. +. +++++.++++..++
T Consensus 73 ~~~i~~~v~Q~~~l-~~tv~enl~~~~~~~~~----------------------------------~~~~~~~~l~~~gl 117 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI-GVTVNDIVYLYEELKGL----------------------------------DRDLFLEMLKALKL 117 (263)
T ss_dssp CTTEEECCGGGSCT-TSBHHHHHHHHHHHTCC----------------------------------CHHHHHHHHHHTTC
T ss_pred hhheEEEeCCCCcc-CCcHHHHHHHhhhhcch----------------------------------HHHHHHHHHHHcCC
Confidence 88999 99999999 9999999987531 11 23344455566655
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecCh
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 1133 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRL 1133 (1192)
.+ ........+||||||||++||||++++|++|+||||||+||+++.+.+.+.|++..+ |+|+|||++
T Consensus 118 ~~----------~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~ 185 (263)
T 2pjz_A 118 GE----------EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHEL 185 (263)
T ss_dssp CG----------GGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCG
T ss_pred Ch----------hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCH
Confidence 40 233445668999999999999999999999999999999999999999999998755 999999999
Q ss_pred hHHH-hcC-EEEEEeCCEEEEEcCHHHHHhc
Q psy13234 1134 STII-HAD-EILVMHAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1134 STI~-~aD-rIlVLe~G~IvE~GtheELL~~ 1162 (1192)
+.+. .|| +|++|++|++++.|+++|+.+.
T Consensus 186 ~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 186 DMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp GGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred HHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 9874 699 9999999999999999999854
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.6e-41 Score=372.17 Aligned_cols=215 Identities=23% Similarity=0.296 Sum_probs=176.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++|++++|+.++++++++| +.+.+|+. +||+||||||||||+++|.|+++|++|+|. +|++
T Consensus 7 i~~l~~~y~~~~~vl~~is---l~i~~Ge~---~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~ 67 (253)
T 2nq2_C 7 VENLGFYYQAENFLFQQLN---FDLNKGDI---LAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQS 67 (253)
T ss_dssp EEEEEEEETTTTEEEEEEE---EEEETTCE---EEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSC
T ss_pred EeeEEEEeCCCCeEEEEEE---EEECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------Eecc
Confidence 8899999963467899999 99999998 999999999999999999999999999998 4678
Q ss_pred EEEEcCCCccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
|+||||++.+| +.|++|||.++..... +. ++.+ . ...++++.++++..++.+...
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~-----------~~------~~~~-~------~~~~~~~~~~l~~~~l~~~~~ 123 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHI-----------NT------FAKP-K------SHDYQVAMQALDYLNLTHLAK 123 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGS-----------CT------TCCC-C------HHHHHHHHHHHHHTTCGGGTT
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhc-----------cc------ccCC-C------HHHHHHHHHHHHHcCChHHhc
Confidence 99999999988 6799999998642000 00 0000 0 012345666778877765432
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI 1136 (1192)
....+||||||||++||||++++|++||||||||+||+++.+.+.+.|++..+ ++|+|+|||+++.+
T Consensus 124 -----------~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 192 (253)
T 2nq2_C 124 -----------REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192 (253)
T ss_dssp -----------SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHH
T ss_pred -----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 23558999999999999999999999999999999999999999999988754 79999999999988
Q ss_pred -HhcCEEEEEeCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1137 -IHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1137 -~~aDrIlVLe~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
..||+|++|++|+ ++.|+++|+++.. .+.+.+
T Consensus 193 ~~~~d~v~~l~~G~-~~~g~~~~~~~~~-~~~~~~ 225 (253)
T 2nq2_C 193 VAIANKTLLLNKQN-FKFGETRNILTSE-NLTALF 225 (253)
T ss_dssp HHHCSEEEEEETTE-EEEEEHHHHCCHH-HHHHHH
T ss_pred HHhCCEEEEEeCCe-EecCCHHHHhCcH-HHHHHh
Confidence 5699999999999 9999999987542 344444
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-40 Score=354.23 Aligned_cols=200 Identities=20% Similarity=0.306 Sum_probs=163.8
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~ 974 (1192)
.++ ++|++++|+. ++++++| +.+.+|+. ++|+||||||||||+++|.|+++|++|+|.+||+++.
T Consensus 10 ~l~--~~~ls~~y~~--~il~~vs---l~i~~Ge~---~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----- 74 (214)
T 1sgw_A 10 KLE--IRDLSVGYDK--PVLERIT---MTIEKGNV---VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----- 74 (214)
T ss_dssp EEE--EEEEEEESSS--EEEEEEE---EEEETTCC---EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----
T ss_pred eEE--EEEEEEEeCC--eEEeeeE---EEEcCCCE---EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----
Confidence 356 8999999965 7899999 99999999 9999999999999999999999999999999999986
Q ss_pred hhcccEEEEcCCCccccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 975 SLRQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
..|+.|+||||++.+|.+ |++||+.++.... +. +.+++++.++++..++
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~-----------------------~~-------~~~~~~~~~~l~~~gl 124 (214)
T 1sgw_A 75 KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY-----------------------GV-------KVNKNEIMDALESVEV 124 (214)
T ss_dssp GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT-----------------------TC-------CCCHHHHHHHHHHTTC
T ss_pred hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc-----------------------CC-------chHHHHHHHHHHHcCC
Confidence 368899999999999987 9999998752100 00 0012344444455543
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecC
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHR 1132 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHR 1132 (1192)
+.. .....+||||||||++||||++++|+++|||||||+||+++.+.+.+.|++.. +++|+|++||+
T Consensus 125 -----------~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 125 -----------LDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp -----------CCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred -----------CcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 333 45677899999999999999999999999999999999999999999998875 46999999999
Q ss_pred hhHHHhcCEEEEEeCCEEE
Q psy13234 1133 LSTIIHADEILVMHAGEIV 1151 (1192)
Q Consensus 1133 LSTI~~aDrIlVLe~G~Iv 1151 (1192)
++.+..++..+++.+|+|-
T Consensus 193 ~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 193 ELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp CCTTSSEEEEGGGGBC---
T ss_pred HHHHHHhCCEEEEeCCccc
Confidence 9998875555556667764
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=3.4e-39 Score=362.57 Aligned_cols=241 Identities=14% Similarity=0.134 Sum_probs=190.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccccccccccccccccc
Q psy13234 824 QTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEED 903 (1192)
Q Consensus 824 g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~~~~~~~~~v~~~~~~i~l~~~~g~I~~~fenV 903 (1192)
+..+-+.+.+|+.+..+ ..|+..++.....++++..+.+|+.+..+.+.. ..+.... .+...+.++ ++|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~-----~~~~~~~--~~~~~~~i~--~~~v 107 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCK-----LATGEGS--WKSILTFFN--YQNI 107 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-----HCCSSCC--THHHHHHHH--HTTC
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccCCCCc--ccccCCeEE--EEEE
Confidence 34556777888888777 488999988888888887777787766321100 0000000 111123466 9999
Q ss_pred eeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEE
Q psy13234 904 QFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 983 (1192)
Q Consensus 904 sFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~V 983 (1192)
+|+|+ .+++++++ +.+++|+. +|||||||||||||+++|+|++ +|+| ++++
T Consensus 108 s~~y~--~~vL~~vs---l~i~~Ge~---vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v 158 (305)
T 2v9p_A 108 ELITF--INALKLWL---KGIPKKNC---LAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFA 158 (305)
T ss_dssp CHHHH--HHHHHHHH---HTCTTCSE---EEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGG
T ss_pred EEEcC--hhhhccce---EEecCCCE---EEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEe
Confidence 99997 56899998 99999888 9999999999999999999999 8998 4578
Q ss_pred cCCCccccccHHH-HHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc-CC
Q psy13234 984 PQDTVLFNNSIKF-NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS-FP 1061 (1192)
Q Consensus 984 PQDp~LFnGTIre-NI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~-LP 1061 (1192)
||++.+|++|+++ ||.|+ +++++ ++++++.. +|
T Consensus 159 ~q~~~lf~~ti~~~ni~~~-~~~~~--------------------------------------------~~~~~i~~~L~ 193 (305)
T 2v9p_A 159 NHKSHFWLASLADTRAALV-DDATH--------------------------------------------ACWRYFDTYLR 193 (305)
T ss_dssp GTTSGGGGGGGTTCSCEEE-EEECH--------------------------------------------HHHHHHHHTTT
T ss_pred cCccccccccHHHHhhccC-ccccH--------------------------------------------HHHHHHHHHhH
Confidence 9999999999998 99986 33221 23456666 89
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCE
Q psy13234 1062 DGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADE 1141 (1192)
Q Consensus 1062 ~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDr 1141 (1192)
+||| |.+|||||||| |||++++|+||| ||+||+++|+.|+. +|||++++..||+
T Consensus 194 ~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~ 247 (305)
T 2v9p_A 194 NALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------------LHSRVQTFRFEQP 247 (305)
T ss_dssp GGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------------GTTTEEEEECCCC
T ss_pred ccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------------HhCCHHHHHhCCE
Confidence 9998 77999999999 999999999999 99999999999962 3999999999999
Q ss_pred EEEEeCCEEEEEcCHHHHHhcCcHHHHHHHHhhccCC
Q psy13234 1142 ILVMHAGEIVERGRHEELLERNGVYASMWIQQNTKQS 1178 (1192)
Q Consensus 1142 IlVLe~G~IvE~GtheELL~~~G~Ya~L~~~Q~~~~~ 1178 (1192)
| +|++|+|++.|+|+|| ++.|+++|..+..+++
T Consensus 248 i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~~~~~ 280 (305)
T 2v9p_A 248 C-TDESGEQPFNITDADW---KSFFVRLWGRLDLIDE 280 (305)
T ss_dssp C-CCC---CCCCCCHHHH---HHHHHHSTTTTTCCC-
T ss_pred E-EEeCCEEEEeCCHHHH---HHHHHHHHHHcccCCc
Confidence 9 9999999999999999 7899999987765443
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.98 E-value=2.1e-32 Score=329.22 Aligned_cols=198 Identities=23% Similarity=0.267 Sum_probs=158.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++++++.|.. ..++.++ +.+.+|+. +||+||+|||||||+++|+|+++|++|+|.+ +.+
T Consensus 290 ~~~l~~~~~~--~~l~~~~---~~i~~Ge~---~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~ 348 (538)
T 1yqt_A 290 YPRLVKDYGS--FRLEVEP---GEIKKGEV---IGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLT 348 (538)
T ss_dssp ECCEEEEETT--EEEEECC---EEEETTCE---EEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCC
T ss_pred EeeEEEEECC--EEEEeCc---cccCCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------Cce
Confidence 7888888853 2455555 77888888 9999999999999999999999999999985 246
Q ss_pred EEEEcCCCcc-ccccHHHHHhcc-ccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDTVL-FNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp~L-FnGTIreNI~~G-~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
|+||||++.+ ++.|+.||+... .+..+ .++.+.++++..++.+.
T Consensus 349 i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~l~~~- 394 (538)
T 1yqt_A 349 VAYKPQYIKADYEGTVYELLSKIDASKLN---------------------------------SNFYKTELLKPLGIIDL- 394 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHHHHHT---------------------------------CHHHHHHTTTTTTCGGG-
T ss_pred EEEEecCCcCCCCCcHHHHHHhhhccCCC---------------------------------HHHHHHHHHHHcCChhh-
Confidence 9999999976 678999998643 11000 01223333344444322
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChhH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLST 1135 (1192)
.+ .....||||||||++|||||+++|++|||||||++||..+.+.|.+.|+++. .++|+|+|||+++.
T Consensus 395 ------~~----~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~ 464 (538)
T 1yqt_A 395 ------YD----REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464 (538)
T ss_dssp ------TT----SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred ------hc----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 23 3345799999999999999999999999999999999999999999999875 48999999999999
Q ss_pred HH-hcCEEEEEeC--CEEEEEcCHHHHHhc
Q psy13234 1136 II-HADEILVMHA--GEIVERGRHEELLER 1162 (1192)
Q Consensus 1136 I~-~aDrIlVLe~--G~IvE~GtheELL~~ 1162 (1192)
+. .||+|++|++ |++++.|++++++..
T Consensus 465 ~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 465 IDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp HHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 86 5999999996 788899999998753
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=4.6e-32 Score=326.00 Aligned_cols=200 Identities=24% Similarity=0.265 Sum_probs=157.7
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++++..|.. ..+...+ +.+.+|+. +||+||||||||||+++|+|+++|++|+|.++|. .
T Consensus 272 ~~~l~~~~~~--~~l~~~~---~~i~~Gei---~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 331 (538)
T 3ozx_A 272 WTKIIKKLGD--FQLVVDN---GEAKEGEI---IGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------I 331 (538)
T ss_dssp ECCEEEEETT--EEEEECC---EEEETTCE---EEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------C
T ss_pred EcceEEEECC--EEEEecc---ceECCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------e
Confidence 7777777753 2344445 77888888 9999999999999999999999999999998763 5
Q ss_pred EEEEcCCCcc-ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh
Q psy13234 980 IGVVPQDTVL-FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058 (1192)
Q Consensus 980 Ig~VPQDp~L-FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~ 1058 (1192)
|+|+||++.. |..|+++|+.+...... ....+.+.++++..++.+.
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~-------------------------------~~~~~~~~~~l~~~~l~~~-- 378 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDAL-------------------------------STSSWFFEEVTKRLNLHRL-- 378 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTT-------------------------------CTTSHHHHHTTTTTTGGGC--
T ss_pred eEeechhcccccCCCHHHHHHHhhhhcc-------------------------------chhHHHHHHHHHHcCCHHH--
Confidence 8999999874 57899999975321110 0011223344466665432
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChhHH
Q psy13234 1059 SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1059 ~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLSTI 1136 (1192)
.| .....||||||||++|||||+++|+|||||||||+||..+...|.+.|+++. .++|+|+|||+++.+
T Consensus 379 -----~~----~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~ 449 (538)
T 3ozx_A 379 -----LE----SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH 449 (538)
T ss_dssp -----TT----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred -----hc----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 22 3345799999999999999999999999999999999999999999999875 479999999999998
Q ss_pred Hh-cCEEEEEeC--CEEEEEcCHHHHHh
Q psy13234 1137 IH-ADEILVMHA--GEIVERGRHEELLE 1161 (1192)
Q Consensus 1137 ~~-aDrIlVLe~--G~IvE~GtheELL~ 1161 (1192)
.. ||||+||++ |.+...|++.++..
T Consensus 450 ~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 450 DYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp HHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 75 999999986 56777788777654
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=2.9e-32 Score=331.88 Aligned_cols=198 Identities=23% Similarity=0.269 Sum_probs=160.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++++++|.. ..++.++ +.+.+|+. +||+||||||||||+++|.|+++|++|+|.+ +.+
T Consensus 360 ~~~l~~~~~~--~~l~~~~---~~v~~Gei---~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~ 418 (607)
T 3bk7_A 360 YPRLVKDYGS--FKLEVEP---GEIRKGEV---IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLT 418 (607)
T ss_dssp ECCEEEECSS--CEEEECC---EEEETTCE---EEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCC
T ss_pred EeceEEEecc--eEEEecc---cccCCCCE---EEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeE
Confidence 7888888853 2455666 77888888 9999999999999999999999999999986 246
Q ss_pred EEEEcCCCcc-ccccHHHHHhcc-ccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 980 IGVVPQDTVL-FNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 980 Ig~VPQDp~L-FnGTIreNI~~G-~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
||||||++.+ ++.|+.||+.+. .+..+ .++.+.++++..++.+
T Consensus 419 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~l~~-- 463 (607)
T 3bk7_A 419 VAYKPQYIKAEYEGTVYELLSKIDSSKLN---------------------------------SNFYKTELLKPLGIID-- 463 (607)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHHHHHH---------------------------------CHHHHHHTHHHHTCTT--
T ss_pred EEEEecCccCCCCCcHHHHHHhhhccCCC---------------------------------HHHHHHHHHHHcCCch--
Confidence 9999999876 678999998653 11000 1123344445555432
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChhH
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLST 1135 (1192)
-.+.++ ..||||||||++|||||+++|++||||||||+||.++.+.+.+.|+++. +++|+|+|||+++.
T Consensus 464 -----~~~~~~----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 464 -----LYDRNV----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp -----TTTSBG----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred -----HhcCCh----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 233343 4799999999999999999999999999999999999999999999874 48999999999998
Q ss_pred HH-hcCEEEEEeC--CEEEEEcCHHHHHhc
Q psy13234 1136 II-HADEILVMHA--GEIVERGRHEELLER 1162 (1192)
Q Consensus 1136 I~-~aDrIlVLe~--G~IvE~GtheELL~~ 1162 (1192)
+. .||+|++|++ |++++.|++++++..
T Consensus 535 ~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 535 IDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp HHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 86 5999999996 888899999998864
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.6e-32 Score=327.97 Aligned_cols=205 Identities=23% Similarity=0.294 Sum_probs=163.9
Q ss_pred cccceeeecCCCCccccccccceeecCCc--ccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQ--LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge--~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR 977 (1192)
.+++.|+|+.....+++++ +.+.+|+ .||.+||+||||||||||+++|.|+.+|++|+. +. +
T Consensus 349 ~~~~~~~y~~~~~~l~~vs---l~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~ 412 (608)
T 3j16_B 349 SASRAFSYPSLKKTQGDFV---LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------K 412 (608)
T ss_dssp SSSSCCEECCEEEECSSCE---EEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------S
T ss_pred ccceeEEecCcccccCceE---EEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------C
Confidence 3667888876556788888 9999883 578899999999999999999999999999962 21 3
Q ss_pred ccEEEEcCCCc-cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHH
Q psy13234 978 QAIGVVPQDTV-LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056 (1192)
Q Consensus 978 ~~Ig~VPQDp~-LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~ 1056 (1192)
..++|+||++. .|++|+++|+........ .+.+...++++..++.+.
T Consensus 413 ~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~--------------------------------~~~~~~~~~l~~l~l~~~ 460 (608)
T 3j16_B 413 LNVSMKPQKIAPKFPGTVRQLFFKKIRGQF--------------------------------LNPQFQTDVVKPLRIDDI 460 (608)
T ss_dssp CCEEEECSSCCCCCCSBHHHHHHHHCSSTT--------------------------------TSHHHHHHTHHHHTSTTT
T ss_pred CcEEEecccccccCCccHHHHHHHHhhccc--------------------------------ccHHHHHHHHHHcCChhh
Confidence 46999999965 578899999853211000 011223344455555332
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChh
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLS 1134 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLS 1134 (1192)
.|.. -..||||||||++|||||..+|+|||||||||+||.++...+.+.|+++. .++|+|+|||+++
T Consensus 461 -------~~~~----~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 461 -------IDQE----VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp -------SSSB----SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred -------hcCC----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 2333 34799999999999999999999999999999999999999999998864 4899999999999
Q ss_pred HHHh-cCEEEEEeC--CEEEEEcCHHHHHhcC
Q psy13234 1135 TIIH-ADEILVMHA--GEIVERGRHEELLERN 1163 (1192)
Q Consensus 1135 TI~~-aDrIlVLe~--G~IvE~GtheELL~~~ 1163 (1192)
.+.. ||||++|++ |+++..|++++++...
T Consensus 530 ~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 530 MATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp HHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred HHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 8865 999999997 8999999999999753
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=9.9e-32 Score=330.84 Aligned_cols=101 Identities=32% Similarity=0.495 Sum_probs=90.5
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEE
Q psy13234 1068 VGERGLKLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEIL 1143 (1192)
Q Consensus 1068 VGErG~~LSGGQKQRIALARALLrdP---~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIl 1143 (1192)
.+....+||||||||++|||||+++| +|||||||||+||+++.+.|.+.|+++. +++|+|+|||+++.+..||+|+
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~ 616 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYII 616 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEE
Confidence 35567789999999999999999886 5999999999999999999999998875 4799999999999999999999
Q ss_pred EE------eCCEEEEEcCHHHHHhcCcHHHH
Q psy13234 1144 VM------HAGEIVERGRHEELLERNGVYAS 1168 (1192)
Q Consensus 1144 VL------e~G~IvE~GtheELL~~~G~Ya~ 1168 (1192)
+| ++|+|++.|+++|+.+....|..
T Consensus 617 ~l~~~~g~~~G~i~~~g~~~~~~~~~~~~~~ 647 (670)
T 3ux8_A 617 DLGPEGGDRGGQIVAVGTPEEVAEVKESHTG 647 (670)
T ss_dssp EEESSSGGGCCEEEEEECHHHHHTCTTCHHH
T ss_pred EecCCcCCCCCEEEEecCHHHHHhCCccHHH
Confidence 99 89999999999999876544433
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=9.2e-31 Score=322.22 Aligned_cols=216 Identities=21% Similarity=0.298 Sum_probs=140.0
Q ss_pred CCCccccccccceeecCCcccceEEEEcCCCCcHHHHH---------------------HHHhcCCCCC-------CceE
Q psy13234 910 GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTII---------------------RLLFRFYDVE-------SGDI 961 (1192)
Q Consensus 910 ~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLl---------------------rLLlRlydp~-------sGsI 961 (1192)
.+.+++++| +.+++|+. +||+||||||||||+ +++.++..|+ .|.|
T Consensus 30 ~~~~L~~vs---l~i~~Ge~---~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i 103 (670)
T 3ux8_A 30 RAHNLKNID---VEIPRGKL---VVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAI 103 (670)
T ss_dssp CSTTCCSEE---EEEETTSE---EEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEE
T ss_pred CccceeccE---EEECCCCE---EEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccce
Confidence 456899999 99999999 999999999999998 8999999998 5667
Q ss_pred EECCeecCCCChHhhcccEEEEcCCCccc--------------------cccHHHHHhcccc-CCCH--HHHHHHhhhhh
Q psy13234 962 FIDNQNIKTVSQASLRQAIGVVPQDTVLF--------------------NNSIKFNIQYARI-NASE--EEVKEAATSAD 1018 (1192)
Q Consensus 962 ~IDG~DI~~i~~~sLR~~Ig~VPQDp~LF--------------------nGTIreNI~~G~~-~asd--EeV~eAa~~a~ 1018 (1192)
.++|.++... .|+.+++|+|.+.++ .-|++||+.+... ...+ ++..+..
T Consensus 104 ~~~~~~~~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~---- 175 (670)
T 3ux8_A 104 SIDQKTTSRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLI---- 175 (670)
T ss_dssp EESSCC---------CCBHHHHTTCC-------------------------CC---------------------------
T ss_pred EecCchhhcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHH----
Confidence 7777665432 355667777765443 3589999876421 1111 0000000
Q ss_pred hhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCC--EE
Q psy13234 1019 IHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQ--IV 1096 (1192)
Q Consensus 1019 lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~--IL 1096 (1192)
.+ .-.+..+.++..++.+. -.|.+ ...||||||||++|||||+.+|+ +|
T Consensus 176 ------------------~~-~~~~~~~~l~~~gL~~~------~~~~~----~~~LSGGe~QRv~iArAL~~~p~~~lL 226 (670)
T 3ux8_A 176 ------------------LR-EIRDRLGFLQNVGLDYL------TLSRS----AGTLSGGEAQRIRLATQIGSRLTGVLY 226 (670)
T ss_dssp ----------------------CHHHHHHHHHTTCTTC------CTTCB----GGGSCHHHHHHHHHHHHHHTCCCSCEE
T ss_pred ------------------HH-HHHHHHHHHHHcCCchh------hhcCC----cccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 00 00001112333333210 12334 34699999999999999999998 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEEEE------eCCEEEEEcCHHHHHhcCcHHHH
Q psy13234 1097 LLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGRHEELLERNGVYAS 1168 (1192)
Q Consensus 1097 LLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIlVL------e~G~IvE~GtheELL~~~G~Ya~ 1168 (1192)
|||||||+||+++.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++|++++.|+++|+.+......+
T Consensus 227 lLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~ 305 (670)
T 3ux8_A 227 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTG 305 (670)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHH
Confidence 9999999999999999999998874 479999999999999999999999 89999999999999976543333
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=8.4e-31 Score=330.33 Aligned_cols=229 Identities=21% Similarity=0.319 Sum_probs=163.0
Q ss_pred cccccccceeeecC-CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH
Q psy13234 896 IEENMEEDQFGFRK-GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 896 I~~~fenVsFsY~~-~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~ 974 (1192)
++ ++|++|+|+. ++++++++| +.+.+|+. +||+||||||||||+|+|.|+++|++|+|.++|.
T Consensus 672 L~--v~nLs~~Y~g~~~~iL~dVS---l~I~~Gei---vaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-------- 735 (986)
T 2iw3_A 672 VK--VTNMEFQYPGTSKPQITDIN---FQCSLSSR---IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-------- 735 (986)
T ss_dssp EE--EEEEEECCTTCSSCSEEEEE---EEEETTCE---EEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--------
T ss_pred EE--EEeeEEEeCCCCceeeeccE---EEEcCCCE---EEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--------
Confidence 55 8999999975 367899999 99999999 9999999999999999999999999999999872
Q ss_pred hhcccEEEEcCCCcc-----ccccHHHHHhccccCC-CHHHHHHHhhhh----------------------h--------
Q psy13234 975 SLRQAIGVVPQDTVL-----FNNSIKFNIQYARINA-SEEEVKEAATSA----------------------D-------- 1018 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~L-----FnGTIreNI~~G~~~a-sdEeV~eAa~~a----------------------~-------- 1018 (1192)
.+|+|+||++.. .+.|+++|+.+.-.+. +.+++.++.+.. +
T Consensus 736 ---~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~ 812 (986)
T 2iw3_A 736 ---CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFK 812 (986)
T ss_dssp ---CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEET
T ss_pred ---cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhc
Confidence 259999999742 3579999986421110 000000000000 0
Q ss_pred ----------hhhhhccCCCC-Cc-------------h---hh-------h---------hhcccHHHHHHHHHHcChHH
Q psy13234 1019 ----------IHERILSFPDG-YD-------------T---QY-------A---------RINASEEEVKEAATSADIHE 1055 (1192)
Q Consensus 1019 ----------lh~~i~~~pd~-~~-------------~---~~-------~---------~~~~sdeeI~~AL~~A~Lhd 1055 (1192)
+.+.+ .++.. +. + .. + ..+..++++.++|+..++.+
T Consensus 813 ~~~~~e~~~sv~ENi-~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~ 891 (986)
T 2iw3_A 813 NTYEYECSFLLGENI-GMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDP 891 (986)
T ss_dssp TEEEEEEEEEEEEST-TSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCH
T ss_pred ccchhhhhhhhhhhh-hcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCc
Confidence 00000 00000 00 0 00 0 00123456667777766643
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhH
Q psy13234 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 1135 (1192)
Q Consensus 1056 ~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLST 1135 (1192)
... .......||||||||++||||++.+|+||||||||++||.++...+.+.|++. +.|+|+|||+++.
T Consensus 892 ~~~---------~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~ 960 (986)
T 2iw3_A 892 EIV---------SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEF 960 (986)
T ss_dssp HHH---------HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHH
T ss_pred hhh---------cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHH
Confidence 210 11234579999999999999999999999999999999999999999999865 5799999999998
Q ss_pred HH-hcCEEEEEeCCEEEEEcC
Q psy13234 1136 II-HADEILVMHAGEIVERGR 1155 (1192)
Q Consensus 1136 I~-~aDrIlVLe~G~IvE~Gt 1155 (1192)
+. .||+|++|++|++++.|+
T Consensus 961 v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 961 TKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HTTTCCEEECCBTTBCCC---
T ss_pred HHHhCCEEEEEECCEEEEeCC
Confidence 85 599999999999998774
No 56
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=2.1e-30 Score=326.18 Aligned_cols=105 Identities=32% Similarity=0.539 Sum_probs=96.7
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEE
Q psy13234 1067 QVGERGLKLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEI 1142 (1192)
Q Consensus 1067 ~VGErG~~LSGGQKQRIALARALLrdP---~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrI 1142 (1192)
.+|+.+.+|||||||||+|||||+++| +|||||||||+||+++++.+++.|+++. +|+|+|+|+|+++.+..||+|
T Consensus 798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrI 877 (916)
T 3pih_A 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHI 877 (916)
T ss_dssp BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 468889999999999999999999876 7999999999999999999999999875 479999999999999999999
Q ss_pred EEE------eCCEEEEEcCHHHHHhcCcHHHHHHH
Q psy13234 1143 LVM------HAGEIVERGRHEELLERNGVYASMWI 1171 (1192)
Q Consensus 1143 lVL------e~G~IvE~GtheELL~~~G~Ya~L~~ 1171 (1192)
++| ++|+|++.|+|+|+++..+.|...+-
T Consensus 878 ivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l 912 (916)
T 3pih_A 878 IDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFL 912 (916)
T ss_dssp EEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHHH
T ss_pred EEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHHH
Confidence 999 89999999999999998877766553
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=2.1e-30 Score=315.51 Aligned_cols=193 Identities=20% Similarity=0.267 Sum_probs=147.8
Q ss_pred ccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceE---------EECCeecCCC
Q psy13234 901 EEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDI---------FIDNQNIKTV 971 (1192)
Q Consensus 901 enVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI---------~IDG~DI~~i 971 (1192)
+|++++|.....+++++| .+.+|+. +||+||||||||||+++|.|+++|++|++ .++|.++++.
T Consensus 95 ~~ls~~yg~~~~~l~~vs----~i~~Ge~---~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~ 167 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP----IVKDGMV---VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNY 167 (607)
T ss_dssp GSEEEECSTTCCEEECCC----CCCTTSE---EEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHH
T ss_pred CCeEEEECCCCeeeCCCC----CCCCCCE---EEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhh
Confidence 789999964334666653 3556666 99999999999999999999999999996 4677766443
Q ss_pred ChH--hhcccEEEEcCCCc----cccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHH
Q psy13234 972 SQA--SLRQAIGVVPQDTV----LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 972 ~~~--sLR~~Ig~VPQDp~----LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
... ..+..+++++|+.. ++.+|++||+.... .+++ +.
T Consensus 168 ~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---~~~~----------------------------------~~ 210 (607)
T 3bk7_A 168 FERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---EVGK----------------------------------FE 210 (607)
T ss_dssp HHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---CSSC----------------------------------HH
T ss_pred hhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH---HHHH----------------------------------HH
Confidence 211 12456899999743 44579999996421 1112 23
Q ss_pred HHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-Cc
Q psy13234 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SR 1124 (1192)
Q Consensus 1046 ~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-gr 1124 (1192)
++++..++.+. .|..+ ..||||||||++|||||+++|+|||||||||+||+++.+.+.+.|+++.+ ++
T Consensus 211 ~~L~~lgL~~~-------~~~~~----~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~ 279 (607)
T 3bk7_A 211 EVVKELELENV-------LDREL----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK 279 (607)
T ss_dssp HHHHHTTCTTG-------GGSBG----GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCch-------hCCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 34466555432 23333 36999999999999999999999999999999999999999999988744 79
Q ss_pred eEEEEecChhHHHh-cCEEEEEeCC
Q psy13234 1125 TTIIVAHRLSTIIH-ADEILVMHAG 1148 (1192)
Q Consensus 1125 TvIvIAHRLSTI~~-aDrIlVLe~G 1148 (1192)
|+|+|||+++.+.. ||+|++|+++
T Consensus 280 tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 280 AVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp EEEEECSCHHHHHHHCSEEEEEESC
T ss_pred EEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999998864 8999999865
No 58
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.9e-30 Score=312.16 Aligned_cols=193 Identities=22% Similarity=0.276 Sum_probs=146.5
Q ss_pred ccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceE---------EECCeecCCC
Q psy13234 901 EEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDI---------FIDNQNIKTV 971 (1192)
Q Consensus 901 enVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI---------~IDG~DI~~i 971 (1192)
+|++++|.....+++++| .+.+|+. +||+||||||||||+|+|.|+++|++|++ .++|.++...
T Consensus 25 ~~ls~~yg~~~~~l~~vs----~i~~Ge~---~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP----VVKEGMV---VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp CCEEEECSTTCCEEECCC----CCCTTSE---EEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred cCcEEEECCccccccCcC----cCCCCCE---EEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 688999964334566653 3556665 99999999999999999999999999996 4677665432
Q ss_pred ChH--hhcccEEEEcCCCccc----cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHH
Q psy13234 972 SQA--SLRQAIGVVPQDTVLF----NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 972 ~~~--sLR~~Ig~VPQDp~LF----nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
... ..+..+++++|+..++ .+|+++|+.... .. +++.
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~----------------------------------~~~~ 140 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ET----------------------------------GKLE 140 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SS----------------------------------SCHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HH----------------------------------HHHH
Confidence 111 1235689999976543 468999985311 01 1233
Q ss_pred HHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCc
Q psy13234 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASR 1124 (1192)
Q Consensus 1046 ~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~gr 1124 (1192)
++|+..++.+. .|.++ ..||||||||++|||||+.+|+|||||||||+||+++.+.+.+.|+++. +++
T Consensus 141 ~~l~~lgl~~~-------~~~~~----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~ 209 (538)
T 1yqt_A 141 EVVKALELENV-------LEREI----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209 (538)
T ss_dssp HHHHHTTCTTT-------TTSBG----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCChh-------hhCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 34466665321 34444 3699999999999999999999999999999999999999999998774 479
Q ss_pred eEEEEecChhHHHh-cCEEEEEeCC
Q psy13234 1125 TTIIVAHRLSTIIH-ADEILVMHAG 1148 (1192)
Q Consensus 1125 TvIvIAHRLSTI~~-aDrIlVLe~G 1148 (1192)
|+|+|||+++.+.. ||+|++|++|
T Consensus 210 tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 210 SVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp EEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred EEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999998865 8999999865
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=4.7e-29 Score=314.54 Aligned_cols=195 Identities=23% Similarity=0.269 Sum_probs=156.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
..|++++|. ++.+++++| +.+.+|+. ++|+||||||||||+|+|.| |+| +|.+... . .+
T Consensus 438 ~~~ls~~yg-~~~iL~~vs---l~I~~Ge~---v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~----~--~~ 496 (986)
T 2iw3_A 438 NCEFSLAYG-AKILLNKTQ---LRLKRARR---YGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE----E--CR 496 (986)
T ss_dssp EEEEEEEET-TEEEEEEEE---EEEETTCE---EEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT----T--SC
T ss_pred EeeEEEEEC-CEEeEecce---EEEcCCCE---EEEECCCCCCHHHHHHHHhC------CCc--CCCcccc----c--ee
Confidence 457788885 356899999 99999999 99999999999999999995 654 6655421 1 24
Q ss_pred EEEEcCCC-cc-ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH-HH
Q psy13234 980 IGVVPQDT-VL-FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH-ER 1056 (1192)
Q Consensus 980 Ig~VPQDp-~L-FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh-d~ 1056 (1192)
++|++|++ .+ .+-|+.||+.+..... ++++.++|+..++. +.
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-----------------------------------~~~v~~~L~~lgL~~~~ 541 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-----------------------------------KEAIKDKLIEFGFTDEM 541 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-----------------------------------HHHHHHHHHHTTCCHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-----------------------------------HHHHHHHHHHcCCChhh
Confidence 79999985 34 4569999997511011 23444555777773 33
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHH
Q psy13234 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1057 I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI 1136 (1192)
. +.++ ..||||||||++||||++.+|+|||||||||+||.++.+.+.+.|++ .++|+|+|||+++.+
T Consensus 542 ~-------~~~~----~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l 608 (986)
T 2iw3_A 542 I-------AMPI----SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFL 608 (986)
T ss_dssp H-------HSBG----GGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHH
T ss_pred h-------cCCc----ccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHH
Confidence 2 2233 36999999999999999999999999999999999999999999998 689999999999998
Q ss_pred H-hcCEEEEEeCCEEE-EEcCHHHHHhcC
Q psy13234 1137 I-HADEILVMHAGEIV-ERGRHEELLERN 1163 (1192)
Q Consensus 1137 ~-~aDrIlVLe~G~Iv-E~GtheELL~~~ 1163 (1192)
. .||+|++|++|+++ ..|+++|+++..
T Consensus 609 ~~~adrii~L~~G~iv~~~G~~~e~~~~~ 637 (986)
T 2iw3_A 609 DNVCEYIINYEGLKLRKYKGNFTEFVKKC 637 (986)
T ss_dssp HHHCSEEEEEETTEEEEEESCHHHHHHHC
T ss_pred HHhCCEEEEEECCeeecCCCCHHHHHhhh
Confidence 6 49999999999997 589999988643
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=7.4e-30 Score=306.94 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=144.1
Q ss_pred ceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceE-----------EECCeecCCC
Q psy13234 903 DQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDI-----------FIDNQNIKTV 971 (1192)
Q Consensus 903 VsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI-----------~IDG~DI~~i 971 (1192)
+..+|..+.-.+.++ +.-++||.+||+||||||||||+|+|.|+++|++|+| .++|.++..+
T Consensus 5 ~~~~~~~~~f~l~~l-------~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~ 77 (538)
T 3ozx_A 5 VIHRYKVNGFKLFGL-------PTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNY 77 (538)
T ss_dssp EEEESSTTSCEEECC-------CCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHH
T ss_pred CceecCCCceeecCC-------CCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHH
Confidence 445665443333333 3334455599999999999999999999999999999 6788877543
Q ss_pred ChHh------hcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHH
Q psy13234 972 SQAS------LRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 972 ~~~s------LR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
.... .+..+.+++|.+.++.+|+++++...+. .+ ++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~----------------------------------~~~ 120 (538)
T 3ozx_A 78 FKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RG----------------------------------KKD 120 (538)
T ss_dssp HHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SS----------------------------------CHH
T ss_pred HHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchh---HH----------------------------------HHH
Confidence 2222 2233455566677788999988753211 11 223
Q ss_pred HHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCce
Q psy13234 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT 1125 (1192)
Q Consensus 1046 ~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grT 1125 (1192)
++++..++.+. .|..++ .||||||||++|||||+++|+|||||||||+||+++...+.+.|+++.+++|
T Consensus 121 ~~l~~l~l~~~-------~~~~~~----~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~t 189 (538)
T 3ozx_A 121 EVKELLNMTNL-------WNKDAN----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKY 189 (538)
T ss_dssp HHHHHTTCGGG-------TTSBGG----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHcCCchh-------hcCChh----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 33455655432 244443 6999999999999999999999999999999999999999999999988999
Q ss_pred EEEEecChhHHH-hcCEEEEEeCCE
Q psy13234 1126 TIIVAHRLSTII-HADEILVMHAGE 1149 (1192)
Q Consensus 1126 vIvIAHRLSTI~-~aDrIlVLe~G~ 1149 (1192)
+|+|+|+++.+. .||+|++|++|.
T Consensus 190 ii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 190 VIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEET
T ss_pred EEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999875 599999998754
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.5e-29 Score=303.69 Aligned_cols=197 Identities=22% Similarity=0.265 Sum_probs=142.4
Q ss_pred ccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceE-----------EECCeecC
Q psy13234 901 EEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDI-----------FIDNQNIK 969 (1192)
Q Consensus 901 enVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI-----------~IDG~DI~ 969 (1192)
++++++|..+...+++++ .+.+|+. +||+||||||||||+|+|.|+++|++|+| .++|.++.
T Consensus 81 ~~~~~~Y~~~~~~l~~l~----~~~~Gei---~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~ 153 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP----TPRPGQV---LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQ 153 (608)
T ss_dssp TTEEEECSTTSCEEECCC----CCCTTSE---EEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHH
T ss_pred CCeEEEECCCceeecCCC----CCCCCCE---EEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhh
Confidence 468889976555566553 4555665 99999999999999999999999999998 34555444
Q ss_pred CCChHhhcccEE--EEcCCCccc----c---ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhccc
Q psy13234 970 TVSQASLRQAIG--VVPQDTVLF----N---NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINAS 1040 (1192)
Q Consensus 970 ~i~~~sLR~~Ig--~VPQDp~LF----n---GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~s 1040 (1192)
.+....+++.+. +.||....+ . .++.+++.... ...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-----------------------------------~~~ 198 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-----------------------------------EKS 198 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-----------------------------------CSC
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-----------------------------------hhH
Confidence 433333333332 334432211 1 13444443211 112
Q ss_pred HHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy13234 1041 EEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV 1120 (1192)
Q Consensus 1041 deeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l 1120 (1192)
++++.++++..++.+.. |.. -..||||||||++|||||+++|+|||||||||+||+++...+.+.|+++
T Consensus 199 ~~~~~~~l~~~gl~~~~-------~~~----~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l 267 (608)
T 3j16_B 199 PEDVKRYIKILQLENVL-------KRD----IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267 (608)
T ss_dssp HHHHHHHHHHHTCTGGG-------GSC----TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHcCCcchh-------CCC----hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHH
Confidence 34455566777665433 323 3479999999999999999999999999999999999999999999987
Q ss_pred cC-CceEEEEecChhHHHh-cCEEEEEeCCEE
Q psy13234 1121 CA-SRTTIIVAHRLSTIIH-ADEILVMHAGEI 1150 (1192)
Q Consensus 1121 ~~-grTvIvIAHRLSTI~~-aDrIlVLe~G~I 1150 (1192)
.+ ++|+|+|+|+++.+.. ||+|++|++|..
T Consensus 268 ~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 268 LAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp GTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 54 6999999999998865 999999998653
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=1.1e-28 Score=285.47 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=157.4
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-------------------------------------
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD------------------------------------- 955 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd------------------------------------- 955 (1192)
.+++++ +.+.+| . ++||||||||||||+++|.++..
T Consensus 50 ~l~~v~---l~~~~G-~---~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~ 122 (415)
T 4aby_A 50 TITQLE---LELGGG-F---CAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLS 122 (415)
T ss_dssp TEEEEE---EECCSS-E---EEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEE
T ss_pred ceeeEE---EecCCC-c---EEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEe
Confidence 456776 888888 7 99999999999999999965553
Q ss_pred -CCCceEEECCeecCCCChHhhccc-EEEEcCCCccccccHHHHHhccccCCCHHH--H-------HHHhhhhhhhhhhc
Q psy13234 956 -VESGDIFIDNQNIKTVSQASLRQA-IGVVPQDTVLFNNSIKFNIQYARINASEEE--V-------KEAATSADIHERIL 1024 (1192)
Q Consensus 956 -p~sGsI~IDG~DI~~i~~~sLR~~-Ig~VPQDp~LFnGTIreNI~~G~~~asdEe--V-------~eAa~~a~lh~~i~ 1024 (1192)
+.+|++++||.+++..+..++++. +++++|++.++-.+-.++..+-+..+...+ . .++.+..+- ...
T Consensus 123 ~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~--l~~ 200 (415)
T 4aby_A 123 SAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLER--LQA 200 (415)
T ss_dssp TTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH--C--
T ss_pred cCCceEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH--HHh
Confidence 457899999999987777888777 899999999988887776655332221100 0 000000000 000
Q ss_pred cCCCCCc-------------hhh------------hhhcccHHHHHHHHHHcChHHH--Hhc-------CCCCCcc---c
Q psy13234 1025 SFPDGYD-------------TQY------------ARINASEEEVKEAATSADIHER--ILS-------FPDGYDT---Q 1067 (1192)
Q Consensus 1025 ~~pd~~~-------------~~~------------~~~~~sdeeI~~AL~~A~Lhd~--I~~-------LP~GyDT---~ 1067 (1192)
+..+.|. +.. .....-++++.+.++..++.+. ... -+.|++. .
T Consensus 201 ~~~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 280 (415)
T 4aby_A 201 SESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLR 280 (415)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEE
T ss_pred hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEE
Confidence 0000000 000 0000001223333333322110 000 0123333 4
Q ss_pred ccCCCCC--------CChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHH
Q psy13234 1068 VGERGLK--------LSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1068 VGErG~~--------LSGGQKQRIALARALLrdP--~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~ 1137 (1192)
++.++.. ||||||||++||||++.+| ++||||||||+||+++.+.|.+.|+++.+++|+|+|||+++.+.
T Consensus 281 ~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~ 360 (415)
T 4aby_A 281 FSANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA 360 (415)
T ss_dssp EESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred EEcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh
Confidence 4555544 8999999999999999999 99999999999999999999999999988999999999999999
Q ss_pred hcCEEEEE----eCCEEEEEc
Q psy13234 1138 HADEILVM----HAGEIVERG 1154 (1192)
Q Consensus 1138 ~aDrIlVL----e~G~IvE~G 1154 (1192)
.||+|++| ++|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.6e-31 Score=309.55 Aligned_cols=201 Identities=14% Similarity=0.142 Sum_probs=151.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCc-e-EEECCeecCCCChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESG-D-IFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sG-s-I~IDG~DI~~i~~~sLR 977 (1192)
++|++++|+ +++ +.+.+|+. ++|+||||||||||+|+|+|++.|++| + |++|| | .|
T Consensus 121 ~~nl~~~y~-------~vs---l~i~~Ge~---v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 121 IYNLHFMLE-------KIR---MSNFEGPR---VVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp HHHHHHHHH-------HHH---HHSSSCCC---EEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred hhhhhehhh-------cCc---eEeCCCCE---EEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 556666663 455 78887777 999999999999999999999999999 9 99999 1 47
Q ss_pred ccEEEEcCCCcccc----ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh
Q psy13234 978 QAIGVVPQDTVLFN----NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053 (1192)
Q Consensus 978 ~~Ig~VPQDp~LFn----GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L 1053 (1192)
+.+++|||++.+|. .|++||+ ++...... +. + ++++.++++..
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~-------------------~~--~---------~~~~~~ll~~~-- 225 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSG-------------------AT--L---------LHNKQPMVKNF-- 225 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSS-------------------CC--S---------SCCBCCEECCC--
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccC-------------------cc--h---------HHHHHHHHHHh--
Confidence 88999999997654 4899999 76321000 00 0 00000011222
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH--hcCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHcCCceE
Q psy13234 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIART--LLKAPQI----VLLDE-ATSALDTKTERNIQSALNRVCASRTT 1126 (1192)
Q Consensus 1054 hd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARA--LLrdP~I----LLLDE-ATSALD~eTE~~Iq~aL~~l~~grTv 1126 (1192)
|++.... ..+||||||||+||||| |.++|++ ||||| |||+||.. .+.+.+.+++. ++|+
T Consensus 226 ---------gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tv 291 (460)
T 2npi_A 226 ---------GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNI 291 (460)
T ss_dssp ---------CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCE
T ss_pred ---------CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCE
Confidence 4444432 66899999999999999 9999999 99999 99999999 77777777664 7899
Q ss_pred EEEecChh------HH-HhcCE-----EEEEe-CCEEEEEcCHHHHHhc-CcHHHHHH
Q psy13234 1127 IIVAHRLS------TI-IHADE-----ILVMH-AGEIVERGRHEELLER-NGVYASMW 1170 (1192)
Q Consensus 1127 IvIAHRLS------TI-~~aDr-----IlVLe-~G~IvE~GtheELL~~-~G~Ya~L~ 1170 (1192)
|+|+|+.+ .+ .-||+ |++|+ +|+|+ .|+++++.+. +...++.+
T Consensus 292 iiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~i~~~f 348 (460)
T 2npi_A 292 MLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTSIREYF 348 (460)
T ss_dssp EEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHHHHHHH
T ss_pred EEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHHHHHHh
Confidence 99999987 33 56899 99999 99999 9999998643 23344443
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.94 E-value=1.3e-27 Score=298.78 Aligned_cols=100 Identities=29% Similarity=0.504 Sum_probs=90.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEE
Q psy13234 1068 VGERGLKLSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEIL 1143 (1192)
Q Consensus 1068 VGErG~~LSGGQKQRIALARALLrd---P~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIl 1143 (1192)
.+.....||||||||++|||||.++ |+||||||||++||..+.+.|.+.|+++. +|+|+|+|+|+++.+..||+|+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 4666778999999999999999996 69999999999999999999999998874 5799999999999999999999
Q ss_pred EE------eCCEEEEEcCHHHHHhcCcHHH
Q psy13234 1144 VM------HAGEIVERGRHEELLERNGVYA 1167 (1192)
Q Consensus 1144 VL------e~G~IvE~GtheELL~~~G~Ya 1167 (1192)
+| ++|+|++.|+++|+++....|.
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t 833 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAGSVT 833 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTTCSS
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCchhHH
Confidence 99 7999999999999987654443
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.94 E-value=6.3e-27 Score=293.41 Aligned_cols=104 Identities=31% Similarity=0.493 Sum_probs=92.7
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEE
Q psy13234 1067 QVGERGLKLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEI 1142 (1192)
Q Consensus 1067 ~VGErG~~LSGGQKQRIALARALLrdP---~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrI 1142 (1192)
..+.....||||||||++|||||+++| +||||||||++||..+.+.+.+.|+++. +|+|+|+|+|+++.+..||+|
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrI 917 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYI 917 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 456667789999999999999999875 9999999999999999999999998875 579999999999999999999
Q ss_pred EEE------eCCEEEEEcCHHHHHhcCcHHHHHH
Q psy13234 1143 LVM------HAGEIVERGRHEELLERNGVYASMW 1170 (1192)
Q Consensus 1143 lVL------e~G~IvE~GtheELL~~~G~Ya~L~ 1170 (1192)
++| ++|+|++.|+++++.+....|...+
T Consensus 918 ivL~p~gG~~~G~Iv~~g~~~el~~~~~~~t~~~ 951 (972)
T 2r6f_A 918 IDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRY 951 (972)
T ss_dssp EEECSSSTTSCCSEEEEESHHHHHTCTTCHHHHH
T ss_pred EEEcCCCCCCCCEEEEecCHHHHHhCchhHHHHH
Confidence 999 7999999999999997665554443
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.94 E-value=1.9e-26 Score=290.00 Aligned_cols=106 Identities=29% Similarity=0.501 Sum_probs=95.0
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEE
Q psy13234 1067 QVGERGLKLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEI 1142 (1192)
Q Consensus 1067 ~VGErG~~LSGGQKQRIALARALLrdP---~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrI 1142 (1192)
..+.....||||||||++|||||+++| +||||||||++||..+.+.+.+.|+++. +|+|+|+|+|+++.+..||+|
T Consensus 856 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrI 935 (993)
T 2ygr_A 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWI 935 (993)
T ss_dssp BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 456777899999999999999999875 9999999999999999999999998874 579999999999999999999
Q ss_pred EEE------eCCEEEEEcCHHHHHhcCcHHHHHHHH
Q psy13234 1143 LVM------HAGEIVERGRHEELLERNGVYASMWIQ 1172 (1192)
Q Consensus 1143 lVL------e~G~IvE~GtheELL~~~G~Ya~L~~~ 1172 (1192)
++| ++|+|++.|+++++.+....|...+..
T Consensus 936 ivL~p~gg~~~G~Iv~~G~~~el~~~~~~~t~~~l~ 971 (993)
T 2ygr_A 936 IDLGPEGGAGGGTVVAQGTPEDVAAVPASYTGKFLA 971 (993)
T ss_dssp EEEESSSTTSCSEEEEEECHHHHHHCTTCHHHHHHG
T ss_pred EEECCCcCCCCCEEEEecCHHHHHhCCHHHHHHHHH
Confidence 999 699999999999999876666665543
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=2.5e-26 Score=259.05 Aligned_cols=214 Identities=18% Similarity=0.182 Sum_probs=141.5
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcC------------------------------------------------
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRF------------------------------------------------ 953 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl------------------------------------------------ 953 (1192)
+...+| . ++|+||+|||||||+++|..+
T Consensus 20 l~~~~g-~---~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 20 IGFSDR-V---TAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp EECCSS-E---EEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred EecCCC-c---EEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 444455 4 999999999999999999843
Q ss_pred --CCCCCceEEECCeecCCCChHhhcccEEEEcCCCccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCC
Q psy13234 954 --YDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGY 1030 (1192)
Q Consensus 954 --ydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~ 1030 (1192)
+.+.+|.+++||.+++.-+...+.+.+++.||+..++ .|+|.+|+... |+.. .++.+.. ...-.+.
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~r-r~~ld~~---------~~~~~~~ 164 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEEL-RLESSKH---------PTSLVPR 164 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC------------------------------
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHH-HHHHHHh---------hhhHHHH
Confidence 2445679999999987666777888899999998866 89999999753 2211 1111110 0000000
Q ss_pred chhhhhhcccHHHHHHHHHH------------cChHH-HHhcCCCCCcccccC------CCCCCChHHHHHHHHHHHhc-
Q psy13234 1031 DTQYARINASEEEVKEAATS------------ADIHE-RILSFPDGYDTQVGE------RGLKLSGGEKQRVAIARTLL- 1090 (1192)
Q Consensus 1031 ~~~~~~~~~sdeeI~~AL~~------------A~Lhd-~I~~LP~GyDT~VGE------rG~~LSGGQKQRIALARALL- 1090 (1192)
.+.+++.+.+.. ..+.+ ....++.|+++.+++ ....||||||||++||||+.
T Consensus 165 --------~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~ 236 (322)
T 1e69_A 165 --------GSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFAL 236 (322)
T ss_dssp ----------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHH
Confidence 000111111100 00111 112356677776542 34689999999999999995
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEE--EEEeCCEE-EEEcCHHH
Q psy13234 1091 ---KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEI--LVMHAGEI-VERGRHEE 1158 (1192)
Q Consensus 1091 ---rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrI--lVLe~G~I-vE~GtheE 1158 (1192)
++|+++|||||||+||+++.+.+.+.|++..+++|+|+|||+++.+..||++ ++|++|+. +...+-+|
T Consensus 237 ~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 237 MEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp TTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred hccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 7899999999999999999999999999987789999999999988999987 88988864 33344444
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=5.9e-27 Score=249.85 Aligned_cols=150 Identities=17% Similarity=0.200 Sum_probs=96.0
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHH-hccccCCCH
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNI-QYARINASE 1007 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI-~~G~~~asd 1007 (1192)
.||.++|+||||||||||+++|.|+ +|++|+|. +.++.. +....|++||||||++ +||+ .++.+
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~enl~~~~~~---- 85 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEKIDPYLRP---- 85 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-------------CTTTHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHHHHHHHHH----
Confidence 3445999999999999999999999 99999994 344432 2335688999999998 7888 55421
Q ss_pred HHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q psy13234 1008 EEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIAR 1087 (1192)
Q Consensus 1008 EeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALAR 1087 (1192)
+.+.. .. ...++++.++++ . |+ |||||++|||
T Consensus 86 --~~~~~-----~~----------------~~~~~~~~~~l~---------~---gl-------------Gq~qrv~lAr 117 (208)
T 3b85_A 86 --LHDAL-----RD----------------MVEPEVIPKLME---------A---GI-------------VEVAPLAYMR 117 (208)
T ss_dssp --HHHHH-----TT----------------TSCTTHHHHHHH---------T---TS-------------EEEEEGGGGT
T ss_pred --HHHHH-----HH----------------hccHHHHHHHHH---------h---CC-------------chHHHHHHHH
Confidence 00000 00 000112222222 1 22 9999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCE
Q psy13234 1088 TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 1149 (1192)
Q Consensus 1088 ALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~ 1149 (1192)
|++.+|++||||||||+ +.+.+.+.|++..+++|+| |||+++.+. ++...+||.
T Consensus 118 aL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~ 171 (208)
T 3b85_A 118 GRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGL 171 (208)
T ss_dssp TCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcH
Confidence 99999999999999999 8888999998875578888 999988654 444556664
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=1.2e-27 Score=255.57 Aligned_cols=165 Identities=15% Similarity=0.202 Sum_probs=121.2
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh-HhhcccEEEEcCCCcccc
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLFN 991 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~-~sLR~~Ig~VPQDp~LFn 991 (1192)
.++++| +.+++|+. ++|+||||||||||+++|.|++ | |+|.+ |+++.+.+. ...++.++|++|++.+|.
T Consensus 12 ~l~~is---l~i~~G~~---~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (218)
T 1z6g_A 12 SGLVPR---GSMNNIYP---LVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFE 81 (218)
T ss_dssp -------------CCCC---EEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHH
T ss_pred cccCCc---eecCCCCE---EEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHH
Confidence 567888 88888888 9999999999999999999999 6 99999 888755432 346788999999987664
Q ss_pred c-----------cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcC
Q psy13234 992 N-----------SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSF 1060 (1192)
Q Consensus 992 G-----------TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~L 1060 (1192)
. |+++| .||.+ ++++.++++...
T Consensus 82 ~~~~~~~~l~~~~~~~~-~~g~~-------------------------------------~~~i~~~l~~~~-------- 115 (218)
T 1z6g_A 82 DKLKNEDFLEYDNYANN-FYGTL-------------------------------------KSEYDKAKEQNK-------- 115 (218)
T ss_dssp HHHHTTCEEEEEEETTE-EEEEE-------------------------------------HHHHHHHHHTTC--------
T ss_pred Hhhhccchhhhhhcccc-cCCCc-------------------------------------HHHHHHHHhCCC--------
Confidence 3 33344 33322 122333333321
Q ss_pred CCCCcccccCCCCCCChHHHHHHHH-----HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhH
Q psy13234 1061 PDGYDTQVGERGLKLSGGEKQRVAI-----ARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 1135 (1192)
Q Consensus 1061 P~GyDT~VGErG~~LSGGQKQRIAL-----ARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLST 1135 (1192)
...++ .+||||||||++| ||+++++|++++||||||++|.++|+.|++.+.+..+++| ++|
T Consensus 116 ----~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h---- 181 (218)
T 1z6g_A 116 ----ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN---- 181 (218)
T ss_dssp ----EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----
T ss_pred ----cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----
Confidence 11222 5799999999999 9999999999999999999999999999999998887887 788
Q ss_pred HHhcCEEEEEeC
Q psy13234 1136 IIHADEILVMHA 1147 (1192)
Q Consensus 1136 I~~aDrIlVLe~ 1147 (1192)
+..||.|+|+++
T Consensus 182 ~~~~d~iiv~~~ 193 (218)
T 1z6g_A 182 LLNFNLSIINDD 193 (218)
T ss_dssp TSCCSEEEECSS
T ss_pred ccCCCEEEECCC
Confidence 578999998864
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=2.4e-25 Score=231.71 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=110.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHH
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVK 1011 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~ 1011 (1192)
+++|+||||||||||+++|.|++. |.++|.+.++......++++||++|++ |..+|+ +++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~--------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSS--------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEE---------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHh---------
Confidence 489999999999999999999995 667887765543225678999999987 222232 110
Q ss_pred HHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH---
Q psy13234 1012 EAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIART--- 1088 (1192)
Q Consensus 1012 eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARA--- 1088 (1192)
+ .++ .+..+++.+.+||||||||++||||
T Consensus 62 -----------------------------------------~-----~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~ 93 (178)
T 1ye8_A 62 -----------------------------------------K-----FFT--SKKLVGSYGVNVQYFEELAIPILERAYR 93 (178)
T ss_dssp -----------------------------------------T-----TCC--CSSEETTEEECHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------h-----cCC--ccccccccccCcCHHHHHHHHHHhhccc
Confidence 0 001 1145677788999999999999996
Q ss_pred --hcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHcCCceEEEEec---ChhHHHh-cCEEEEEeCCEEEE
Q psy13234 1089 --LLKAPQIVLLDE--ATSALDTKTERNIQSALNRVCASRTTIIVAH---RLSTIIH-ADEILVMHAGEIVE 1152 (1192)
Q Consensus 1089 --LLrdP~ILLLDE--ATSALD~eTE~~Iq~aL~~l~~grTvIvIAH---RLSTI~~-aDrIlVLe~G~IvE 1152 (1192)
++.+|++++||| ||+++|+.+.+.+.+.+++ .+.|+|+++| +.+.+.. ||+ ++|+|.+
T Consensus 94 ~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred cccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999999976 4677999996 5566543 676 6677776
No 71
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.88 E-value=5.8e-25 Score=249.66 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=112.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
+++++| | ++++++++ +.+.+|+. ++|+||||||||||+++|.|+++|++|.|.++|.+ ++.....|++
T Consensus 151 ~~~v~f-y---~~~l~~l~---~~i~~g~~---v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~ 218 (330)
T 2pt7_A 151 YNLLDN-K---EQAISAIK---DGIAIGKN---VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNY 218 (330)
T ss_dssp TTTSTT-H---HHHHHHHH---HHHHHTCC---EEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSE
T ss_pred cCchhh-H---HHHHhhhh---hhccCCCE---EEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhE
Confidence 677777 6 45778887 88888888 99999999999999999999999999999999975 2221111111
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
++++
T Consensus 219 i~~~---------------------------------------------------------------------------- 222 (330)
T 2pt7_A 219 TQLF---------------------------------------------------------------------------- 222 (330)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCc-eEEEEecChhHHHh
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTIIH 1138 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~gr-TvIvIAHRLSTI~~ 1138 (1192)
+ | |||+||++||||+.++|++++||||||. .+.+.|+++..++ |+|+++|++++...
T Consensus 223 -~----------g----gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~ 280 (330)
T 2pt7_A 223 -F----------G----GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEA 280 (330)
T ss_dssp -C----------B----TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHH
T ss_pred -e----------C----CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHH
Confidence 0 1 8999999999999999999999999992 3456677666665 79999999999999
Q ss_pred cCEEEEEeCCE
Q psy13234 1139 ADEILVMHAGE 1149 (1192)
Q Consensus 1139 aDrIlVLe~G~ 1149 (1192)
||||++|++|+
T Consensus 281 ~dri~~l~~g~ 291 (330)
T 2pt7_A 281 FIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHTS
T ss_pred hhhheehhcCC
Confidence 99999999885
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.88 E-value=4e-24 Score=219.83 Aligned_cols=146 Identities=15% Similarity=0.190 Sum_probs=104.1
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCc--cccccHHHHHh
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNSIKFNIQ 999 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~--LFnGTIreNI~ 999 (1192)
+.+.+|+. ++|+||||||||||++++++ |... ++.+.+| ++++|++. .++++..+++.
T Consensus 4 l~i~~gei---~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 4 LTIPELSL---VVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp EEEESSEE---EEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred ccCCCCEE---EEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 88888888 99999999999999999653 2222 2233444 56777752 23333333221
Q ss_pred ccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHH
Q psy13234 1000 YARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGE 1079 (1192)
Q Consensus 1000 ~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQ 1079 (1192)
. .+ ...+..|+.+.+.... ..||||
T Consensus 64 ~------------~~------------------------------------------~~~~~~g~~~~~~~~~-~~s~g~ 88 (171)
T 4gp7_A 64 Y------------IV------------------------------------------SKRLQLGKLTVVDATN-VQESAR 88 (171)
T ss_dssp H------------HH------------------------------------------HHHHHTTCCEEEESCC-CSHHHH
T ss_pred H------------HH------------------------------------------HHHHhCCCeEEEECCC-CCHHHH
Confidence 0 00 0011245666555443 459999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH----------------HHHHHHHHHHc-CCceEEEEecChhHHHhcCEE
Q psy13234 1080 KQRVAIARTLLKAPQIVLLDEATSALDTKTE----------------RNIQSALNRVC-ASRTTIIVAHRLSTIIHADEI 1142 (1192)
Q Consensus 1080 KQRIALARALLrdP~ILLLDEATSALD~eTE----------------~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrI 1142 (1192)
|||++||||+..+|++++|||||++||+.++ +.+.+.|+++. +|.|+|+|||+++.+..++++
T Consensus 89 ~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 89 KPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 9999999999999999999999999999955 77777765542 489999999999999888875
No 73
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.88 E-value=1.4e-22 Score=233.04 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=75.5
Q ss_pred CCCCCChHHHHHHHHHHHhc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEE
Q psy13234 1071 RGLKLSGGEKQRVAIARTLL------KAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEIL 1143 (1192)
Q Consensus 1071 rG~~LSGGQKQRIALARALL------rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIl 1143 (1192)
....||||||||++||||+. ++|++||||||||+||+++.+.+.+.|+++. +|+|+|+|||+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 34579999999999999999 8999999999999999999999999998875 4699999999999988999999
Q ss_pred EEeCCEEEE
Q psy13234 1144 VMHAGEIVE 1152 (1192)
Q Consensus 1144 VLe~G~IvE 1152 (1192)
+|++|++++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.86 E-value=5.4e-24 Score=250.30 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=151.8
Q ss_pred ccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCe---ecCCC
Q psy13234 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ---NIKTV 971 (1192)
Q Consensus 895 ~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~---DI~~i 971 (1192)
.++ .+++++.|..+..+++++ +.+.+|+. ++|+||||||||||+++|.|+++|++|.|.++|+ ++.++
T Consensus 131 ~l~--~~~v~~~~~tg~~vld~v----l~i~~Gq~---~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 131 PLQ--RTPIEHVLDTGVRAINAL----LTVGRGQR---MGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp TTT--SCCCCSBCCCSCHHHHHH----SCCBTTCE---EEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHH
T ss_pred ceE--EeccceecCCCceEEeee----EEecCCCE---EEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHH
Confidence 455 889999996444555554 56666666 9999999999999999999999999999999998 56543
Q ss_pred C-----hHhhcccEEEEcCC--CccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHH
Q psy13234 972 S-----QASLRQAIGVVPQD--TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044 (1192)
Q Consensus 972 ~-----~~sLR~~Ig~VPQD--p~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI 1044 (1192)
. ...+++.|+||+|+ +...+-|+.+|+.+.. |....
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~------------------------------- 244 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD------------------------------- 244 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-------------------------------
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-------------------------------
Confidence 2 35688999999994 4455678999986531 11000
Q ss_pred HHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--
Q psy13234 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-- 1122 (1192)
Q Consensus 1045 ~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-- 1122 (1192)
+..++.+++ +...+||||| ||++|| +++|++ |++||+.+...+.+.++++.+
T Consensus 245 ----~~~~v~~~l------------d~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~ 298 (438)
T 2dpy_A 245 ----RGQHVLLIM------------DSLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGI 298 (438)
T ss_dssp ----TTCEEEEEE------------ECHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCS
T ss_pred ----CCCCHHHHH------------HhHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhcc
Confidence 000111111 2246799999 999999 899998 999999999999999988765
Q ss_pred ---Cc-----eEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHHHh
Q psy13234 1123 ---SR-----TTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLE 1161 (1192)
Q Consensus 1123 ---gr-----TvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheELL~ 1161 (1192)
|+ |++++||+++ ...||++++|+||+|++.|+++++..
T Consensus 299 ~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 299 HGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp TTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred CCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 44 9999999999 78899999999999999999988753
No 75
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.85 E-value=6.1e-25 Score=241.84 Aligned_cols=206 Identities=17% Similarity=0.159 Sum_probs=153.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCeecCCCChHhhcc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE-SGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~-sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
++++.+. +++++++ +.+|+. ++|+|||||||||++++|.|+++|+ +|+|.++|.++..+. +.
T Consensus 8 l~~l~~~-----~vl~~i~-----i~~g~~---v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~ 70 (261)
T 2eyu_A 8 FKKLGLP-----DKVLELC-----HRKMGL---ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KH 70 (261)
T ss_dssp GGGSSCC-----THHHHGG-----GCSSEE---EEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CC
T ss_pred hHHCCCH-----HHHHHHh-----hCCCCE---EEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CC
Confidence 5666553 4667764 455555 9999999999999999999999998 999999999987653 44
Q ss_pred cEEEEcC-----CCccccccHHHHHhccccCC-------CHHHHHHHhhhhhhhhhhc-cCCCCCchhhhhhcccHHHHH
Q psy13234 979 AIGVVPQ-----DTVLFNNSIKFNIQYARINA-------SEEEVKEAATSADIHERIL-SFPDGYDTQYARINASEEEVK 1045 (1192)
Q Consensus 979 ~Ig~VPQ-----Dp~LFnGTIreNI~~G~~~a-------sdEeV~eAa~~a~lh~~i~-~~pd~~~~~~~~~~~sdeeI~ 1045 (1192)
.+++++| ++..|..+|+.|++. +|+. |++.+.++++.++-...+. ...+..- .+-+.
T Consensus 71 ~~~~v~q~~~gl~~~~l~~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~---------~~~~d 140 (261)
T 2eyu_A 71 KKSIVNQREVGEDTKSFADALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTA---------IDTIH 140 (261)
T ss_dssp SSSEEEEEEBTTTBSCHHHHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSH---------HHHHH
T ss_pred cceeeeHHHhCCCHHHHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchH---------HHHHH
Confidence 5678888 777888999999987 5665 7777777665544333322 2222100 00011
Q ss_pred HHHHHcC---hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCE--EEEeCCCCCCCHHH---------HH
Q psy13234 1046 EAATSAD---IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQI--VLLDEATSALDTKT---------ER 1111 (1192)
Q Consensus 1046 ~AL~~A~---Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~I--LLLDEATSALD~eT---------E~ 1111 (1192)
+++.... -...-..++++|++.|++++.++||| ||+++||+++.+|+| +|+||+||++|++. +.
T Consensus 141 ri~~l~~~~~~~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~ 218 (261)
T 2eyu_A 141 RIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQT 218 (261)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEEC
T ss_pred HHhhhcCccccchHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCcc
Confidence 1111110 00111245779999999999999999 999999999999999 99999999999974 45
Q ss_pred HHHHHHHHHcCCceEEEEecChh
Q psy13234 1112 NIQSALNRVCASRTTIIVAHRLS 1134 (1192)
Q Consensus 1112 ~Iq~aL~~l~~grTvIvIAHRLS 1134 (1192)
.++++++...+|+|++.++||++
T Consensus 219 ~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 219 MNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHh
Confidence 78999999999999999999987
No 76
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.84 E-value=1.8e-24 Score=249.33 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=148.9
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCeecCCCChHhhcccEEEEcC-----CCccccccHHHHHhcc
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYDVE-SGDIFIDNQNIKTVSQASLRQAIGVVPQ-----DTVLFNNSIKFNIQYA 1001 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlydp~-sGsI~IDG~DI~~i~~~sLR~~Ig~VPQ-----Dp~LFnGTIreNI~~G 1001 (1192)
++|+.++|+|||||||||++++|.|+++|+ +|+|.++|.++. + .+|+++++|+| ++..|+++|++|+++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~- 208 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFADALRAALRE- 208 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHHHHHHHhhh-
Confidence 344559999999999999999999999998 899988777764 2 46889999999 999999999999998
Q ss_pred ccCC-------CHHHHHHHhhhhhhhhh-hccCCCCCchhhhhhcccHHHHHHHHHHc---ChHHHHhcCCCCCcccccC
Q psy13234 1002 RINA-------SEEEVKEAATSADIHER-ILSFPDGYDTQYARINASEEEVKEAATSA---DIHERILSFPDGYDTQVGE 1070 (1192)
Q Consensus 1002 ~~~a-------sdEeV~eAa~~a~lh~~-i~~~pd~~~~~~~~~~~sdeeI~~AL~~A---~Lhd~I~~LP~GyDT~VGE 1070 (1192)
+|+. ++|++.++++.++..+. +....+.-- .+-+.+.+... .-......+|+++++.|++
T Consensus 209 ~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~---------~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 209 DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTA---------IDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSH---------HHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchH---------HHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 5776 78888888877665333 333333210 01111111111 0011123457899999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHHcCCceEEEEecChhH
Q psy13234 1071 RGLKLSGGEKQRVAIARTLLKAPQI--VLLDEATSALDTK----T-----ERNIQSALNRVCASRTTIIVAHRLST 1135 (1192)
Q Consensus 1071 rG~~LSGGQKQRIALARALLrdP~I--LLLDEATSALD~e----T-----E~~Iq~aL~~l~~grTvIvIAHRLST 1135 (1192)
++.++||| ||+++||+++.+|+| +|+||+||++|.. + +..++++++...+|+|++.+|||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 99999999 999999999999999 9999999999976 3 45689999999999999999999984
No 77
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.84 E-value=7.7e-24 Score=219.51 Aligned_cols=111 Identities=20% Similarity=0.258 Sum_probs=88.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCeecCCCC---hHhhc-ccEE----EEcCCCccccccHHHHHh
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQNIKTVS---QASLR-QAIG----VVPQDTVLFNNSIKFNIQ 999 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlydp~---sGsI~IDG~DI~~i~---~~sLR-~~Ig----~VPQDp~LFnGTIreNI~ 999 (1192)
+.++|||+||||||||+++|.|+|+|+ .|+|.+||.++.+++ .+++| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 359999999999999999999999998 899999999998887 78888 5788 899999988 211
Q ss_pred ccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc-CCCCCcccccCCCCCCChH
Q psy13234 1000 YARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS-FPDGYDTQVGERGLKLSGG 1078 (1192)
Q Consensus 1000 ~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~-LP~GyDT~VGErG~~LSGG 1078 (1192)
+ + ++ ..|++++++.+ +| ||||.|+|+ ||||
T Consensus 77 -~----~-~~---------------------------------------~~a~l~~~i~~~l~-g~dt~i~Eg---lSgG 107 (171)
T 2f1r_A 77 -V----S-EE---------------------------------------EGNDLDWIYERYLS-DYDLVITEG---FSKA 107 (171)
T ss_dssp -C----C-HH---------------------------------------HHTCHHHHHHHHTT-TCSEEEEES---CGGG
T ss_pred -C----C-hh---------------------------------------hhhCHHHHHHhhCC-CCCEEEECC---cCCC
Confidence 1 0 00 15788999999 99 999999995 9999
Q ss_pred HHHHHHHHHHhcCCCCEE
Q psy13234 1079 EKQRVAIARTLLKAPQIV 1096 (1192)
Q Consensus 1079 QKQRIALARALLrdP~IL 1096 (1192)
|||||+||||++++|+|.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999873
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=8.3e-23 Score=225.93 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=94.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccc-cHHHHHhccccCCCHHHHH
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIKFNIQYARINASEEEVK 1011 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~~asdEeV~ 1011 (1192)
+|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.||.....+ +
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~-- 78 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-N-- 78 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCT-T--
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-H--
Confidence 99999999999999999999999999999999998743 3457889999999998876 999999988532111 0
Q ss_pred HHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcC
Q psy13234 1012 EAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK 1091 (1192)
Q Consensus 1012 eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLr 1091 (1192)
..+.+.+.++ .++-.. .. ..||||||||+++|||+..
T Consensus 79 ----------------------------~~~~i~~~~~----~~~~~~-------~~----~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 79 ----------------------------CWEPIEKYIN----EQYEKF-------LK----EEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp ----------------------------CSHHHHHHHH----HHHHHH-------HH----HHSCTTCCSSCCCCSCCEE
T ss_pred ----------------------------HHHHHHHHHH----HHHHhh-------hH----HhcCcccchhhhhheeeee
Confidence 0111222222 111111 11 1599999999999999875
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHH
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII 1137 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~ 1137 (1192)
+++|||||++||+.. ..+.+.|. +..++|+|.|+.+++.
T Consensus 116 ---lllldep~~gL~~lD-~~~l~~L~---~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 116 ---LYFISPTGHSLRPLD-LEFMKHLS---KVVNIIPVIAKADTMT 154 (270)
T ss_dssp ---EEEECCCSSSCCHHH-HHHHHHHH---TTSEEEEEETTGGGSC
T ss_pred ---eEEEecCCCcCCHHH-HHHHHHHH---hcCcEEEEEeccccCC
Confidence 999999999999876 33444443 3489999999987763
No 79
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=9.9e-23 Score=237.66 Aligned_cols=175 Identities=14% Similarity=0.124 Sum_probs=130.4
Q ss_pred CccccccccceeecCCc-----------------ccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH
Q psy13234 912 GTRDAIGCLRMIALESQ-----------------LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge-----------------~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~ 974 (1192)
.++++++ +.+.+|+ .+..+||+||||||||||+|+|.|+++|++|+|.++|.++.
T Consensus 37 ~~l~~is---~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 37 EILNLIE---LRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHH---HHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC---------
T ss_pred HHhhhcc---ceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-----
Confidence 4677777 8888888 22249999999999999999999999999999999998763
Q ss_pred hhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 975 SLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
|+ ++++|++...+-|+.||+.++.+. ++ +.+.++..++.
T Consensus 109 --~~--~~v~q~~~~~~ltv~D~~g~~~~~---~~----------------------------------~~~~L~~~~L~ 147 (413)
T 1tq4_A 109 --ME--RHPYKHPNIPNVVFWDLPGIGSTN---FP----------------------------------PDTYLEKMKFY 147 (413)
T ss_dssp --CC--CEEEECSSCTTEEEEECCCGGGSS---CC----------------------------------HHHHHHHTTGG
T ss_pred --ee--EEeccccccCCeeehHhhcccchH---HH----------------------------------HHHHHHHcCCC
Confidence 22 789999865577999998776432 11 22233555543
Q ss_pred HHHhcCCCCCcccccCCCCCCChH--HHHHHHHHHHhcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGG--EKQRVAIARTLLK----------APQIVLLDEATSALDTKTERNIQSALNRVC- 1121 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGG--QKQRIALARALLr----------dP~ILLLDEATSALD~eTE~~Iq~aL~~l~- 1121 (1192)
+ ++..+ . |||| ||||++||||+.+ +|++++||||||+||+.+.+.+.+.|++..
T Consensus 148 ~--------~~~~~----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 148 E--------YDFFI----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp G--------CSEEE----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred c--------cCCeE----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 2 23322 2 8999 9999999999999 999999999999999999999998887763
Q ss_pred -----C----CceEEEEecChhH--HHh-cCEEE-EEeCC
Q psy13234 1122 -----A----SRTTIIVAHRLST--IIH-ADEIL-VMHAG 1148 (1192)
Q Consensus 1122 -----~----grTvIvIAHRLST--I~~-aDrIl-VLe~G 1148 (1192)
. .+++++-||.++. +.. +|+|. .|.+|
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 1 2556677998885 543 77774 34444
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.81 E-value=2.4e-22 Score=226.62 Aligned_cols=185 Identities=16% Similarity=0.182 Sum_probs=126.2
Q ss_pred cccccccccccccceeeecCCCCcccccccccee--------------------ecCCcccceEEEEcCCCCcHHHHHHH
Q psy13234 890 KRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMI--------------------ALESQLVWYLLQVGQSGAGKSTIIRL 949 (1192)
Q Consensus 890 ~~~~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~--------------------i~~Ge~Ge~VAIVG~SGSGKSTLlrL 949 (1192)
+.+.+.|+ +++|++.|. |.+++++ +. ....+.|+.+||+||||||||||+++
T Consensus 38 ~~~~~~i~--~~~v~~~y~---p~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 38 RGLGEQID--LLEVEEVYL---PLARLIH---LQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CCTTCCCC--HHHHHHTHH---HHHHHHH---HHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHH
T ss_pred cCCCCeEE--eeehhhhhh---hHHHHHH---HHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHH
Confidence 33445677 999999994 3445544 22 01245566699999999999999999
Q ss_pred HhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhcccc-CCCHHHHHHHhhhhhhhhhhccCCC
Q psy13234 950 LFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARI-NASEEEVKEAATSADIHERILSFPD 1028 (1192)
Q Consensus 950 LlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~-~asdEeV~eAa~~a~lh~~i~~~pd 1028 (1192)
|.|+++|.+|. +++++||||+++++.|++||+.+... +. |+
T Consensus 110 L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~---------------------~~ 151 (312)
T 3aez_A 110 LQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGF---------------------PE 151 (312)
T ss_dssp HHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTS---------------------GG
T ss_pred HHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCC---------------------Ch
Confidence 99999998663 56999999999999999999864210 00 00
Q ss_pred CCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q psy13234 1029 GYDTQYARINASEEEVKEAATSADIHERILSFPDGYD-TQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107 (1192)
Q Consensus 1029 ~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyD-T~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~ 1107 (1192)
..+.+.+.+ .+..+.+|+. ..+ ..||||||||+++|||++.+|+|||||||++.+|+
T Consensus 152 ---------~~d~~~~~~---------~L~~l~~~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 152 ---------SYNRRALMR---------FVTSVKSGSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp ---------GBCHHHHHH---------HHHHHHTTCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ---------HHHHHHHHH---------HHHHhCCCcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 011222222 3333334443 444 37999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHcCCceEEEEecChhHH--HhcCEEEEEeCCE
Q psy13234 1108 KTERNIQSALNRVCASRTTIIVAHRLSTI--IHADEILVMHAGE 1149 (1192)
Q Consensus 1108 eTE~~Iq~aL~~l~~grTvIvIAHRLSTI--~~aDrIlVLe~G~ 1149 (1192)
.. ..+.+.+ ..+|+|.|..+.. ...+|.+.+.+|+
T Consensus 210 ~~-----~~l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 210 PT-----LMVSDLF--DFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp SS-----CCGGGGC--SEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred ch-----HHHHHhc--CcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 22 1233332 3568888877654 2356655555543
No 81
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.81 E-value=1.6e-23 Score=220.41 Aligned_cols=156 Identities=18% Similarity=0.236 Sum_probs=123.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYD-------------VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlyd-------------p~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIre 996 (1192)
|+.++||||||||||||+++|.|+++ |..|+ +||+|+..++.+.+|+.+ +|++++|++|+++
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~~~ 78 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEFSG 78 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeeecC
Confidence 33499999999999999999999986 88898 699999999999999987 7999999999999
Q ss_pred HHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCC
Q psy13234 997 NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLS 1076 (1192)
Q Consensus 997 NI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LS 1076 (1192)
|+ ||. +++++.+++ +.+...-+ .-.|+|+++....
T Consensus 79 n~-~g~---~~~~i~~~~----------------------------------~~~~~~~~-~~~~~g~~~~~~~------ 113 (198)
T 1lvg_A 79 NL-YGT---SKEAVRAVQ----------------------------------AMNRICVL-DVDLQGVRSIKKT------ 113 (198)
T ss_dssp EE-EEE---EHHHHHHHH----------------------------------HTTCEEEE-ECCHHHHHHHTTS------
T ss_pred cc-CCC---CHHHHHHHH----------------------------------HcCCcEEE-ECCHHHHHHHHhc------
Confidence 98 774 566777666 32211110 1134566665321
Q ss_pred hHHHHHHHHHH-HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeC
Q psy13234 1077 GGEKQRVAIAR-TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 1147 (1192)
Q Consensus 1077 GGQKQRIALAR-ALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~ 1147 (1192)
++ .|| +++++|++++|||+||++|++||+.|++.|.+..++ +.++| ++ .++|+|+|+++
T Consensus 114 -----~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 114 -----DL-CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp -----SC-CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred -----CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 12 677 899999999999999999999999999999877655 46788 56 89999999874
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.80 E-value=4.9e-21 Score=215.08 Aligned_cols=170 Identities=14% Similarity=0.192 Sum_probs=122.4
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC----hHhh--cccEEEEcCCCc-ccc-cc
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS----QASL--RQAIGVVPQDTV-LFN-NS 993 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~----~~sL--R~~Ig~VPQDp~-LFn-GT 993 (1192)
+.+.+|+. +++||||||||||+++.|.|++.|++|+|.++|.|+.... ...+ |..|+|++|++. +++ .|
T Consensus 95 ~~~~~g~v---i~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~ 171 (302)
T 3b9q_A 95 LGFRKPAV---IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 171 (302)
T ss_dssp CCSSSCEE---EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHH
T ss_pred cccCCCcE---EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHH
Confidence 66666666 9999999999999999999999999999999999987653 1233 457999999997 655 58
Q ss_pred HHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCC
Q psy13234 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGL 1073 (1192)
Q Consensus 994 IreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~ 1073 (1192)
++||+.++.....+ ..+ ++.+++.+. .+..++
T Consensus 172 v~e~l~~~~~~~~d-------------~~l------------------------ldt~gl~~~-------~~~~~~---- 203 (302)
T 3b9q_A 172 LSKAVKRGKEEGYD-------------VVL------------------------CDTSGRLHT-------NYSLME---- 203 (302)
T ss_dssp HHHHHHHHHHTTCS-------------EEE------------------------ECCCCCSSC-------CHHHHH----
T ss_pred HHHHHHHHHHcCCc-------------chH------------------------HhcCCCCcc-------hhHHHH----
Confidence 99999764210000 000 122332211 122233
Q ss_pred CCChHHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEec---------ChhHHH-hcCE
Q psy13234 1074 KLSGGEKQRVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH---------RLSTII-HADE 1141 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALLrdP~--ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAH---------RLSTI~-~aDr 1141 (1192)
.|| |||++||||+..+|+ +|+|| ||+++|+.+.. +.+.+ ..+.|+|++|| .++... ..+.
T Consensus 204 eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~p 275 (302)
T 3b9q_A 204 ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIP 275 (302)
T ss_dssp HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCC
T ss_pred HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCC
Confidence 378 999999999999999 99999 99999998553 23332 24799999999 455553 4689
Q ss_pred EEEEeCCEE
Q psy13234 1142 ILVMHAGEI 1150 (1192)
Q Consensus 1142 IlVLe~G~I 1150 (1192)
|.++.+|+.
T Consensus 276 i~~i~~Ge~ 284 (302)
T 3b9q_A 276 VKFIGVGEA 284 (302)
T ss_dssp EEEEECSSS
T ss_pred EEEEeCCCC
Confidence 999999974
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.80 E-value=1.8e-19 Score=207.00 Aligned_cols=82 Identities=23% Similarity=0.229 Sum_probs=76.3
Q ss_pred CCChHHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEE
Q psy13234 1074 KLSGGEKQRVAIARTLL---------KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILV 1144 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALL---------rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlV 1144 (1192)
.||||||||++|||+|. ++|+||+||||||+||+...+.+.+.|.+.. .|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 9999999999999999999999999998864 89999999 454 8999999
Q ss_pred EeCCEEEEEcCHHHHH
Q psy13234 1145 MHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1145 Le~G~IvE~GtheELL 1160 (1192)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999998873
No 84
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.79 E-value=9.4e-22 Score=206.81 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=122.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEE 1009 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEe 1009 (1192)
|++++|+||||||||||+++|.|+++ ++| |.+||.++.+++ .+++++|+++|+. +++ ++|+. +..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~--~~~----- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLS--RVG----- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEE--ECC-----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhh--ccc-----
Confidence 56699999999999999999999999 999 999999987654 5799999999986 443 23331 000
Q ss_pred HHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHH-HHHH-
Q psy13234 1010 VKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRV-AIAR- 1087 (1192)
Q Consensus 1010 V~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRI-ALAR- 1087 (1192)
++. -+...+.++|+.|..+|||||+++ +++|
T Consensus 66 ----------------~~~-------------------------------~~~~~~~~v~~~~~~ls~~er~~~~~l~~~ 98 (189)
T 2i3b_A 66 ----------------LEP-------------------------------PPGKRECRVGQYVVDLTSFEQLALPVLRNA 98 (189)
T ss_dssp ----------------CCC-------------------------------CSSSCCEESSSSEECHHHHHTTTTTTTCCC
T ss_pred ----------------ccC-------------------------------CccccccccceEEEcchHHHHHHHHHHhhh
Confidence 000 011234588999999999999999 6666
Q ss_pred --HhcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHcCCceEEE--E--ecChhHHHhcCEEEEEeCCEEEEEc
Q psy13234 1088 --TLLKAPQIVLLDE--ATSALDTKTERNIQSALNRVCASRTTII--V--AHRLSTIIHADEILVMHAGEIVERG 1154 (1192)
Q Consensus 1088 --ALLrdP~ILLLDE--ATSALD~eTE~~Iq~aL~~l~~grTvIv--I--AHRLSTI~~aDrIlVLe~G~IvE~G 1154 (1192)
|+.++|+|+|||| ||..+|.++-+.+.+.+++ .+|+|+ | +||.+ ..-+|+|..+++|+|.+..
T Consensus 99 a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 99 DCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred hHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 7899999999999 8988999887777777763 355553 3 49986 5667888888999998854
No 85
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=1.4e-19 Score=228.28 Aligned_cols=95 Identities=31% Similarity=0.474 Sum_probs=87.6
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHhcCEEEEE
Q psy13234 1069 GERGLKLSGGEKQRVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVM 1145 (1192)
Q Consensus 1069 GErG~~LSGGQKQRIALARALLrdP~--ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~aDrIlVL 1145 (1192)
+.....||||||||++|||||.++|+ +||||||||+||++..+.+.+.|+++.+ |+|+|+|+|+++.+..||+|++|
T Consensus 459 ~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~l 538 (916)
T 3pih_A 459 SRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDI 538 (916)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence 34455799999999999999999887 9999999999999999999999998854 69999999999999999999999
Q ss_pred ------eCCEEEEEcCHHHHHhcC
Q psy13234 1146 ------HAGEIVERGRHEELLERN 1163 (1192)
Q Consensus 1146 ------e~G~IvE~GtheELL~~~ 1163 (1192)
++|+|+..|+++|+++..
T Consensus 539 gpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 539 GPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ESSSGGGCSEEEEEECHHHHHHSC
T ss_pred cCCcccCCCEEEEeechhhhhcCc
Confidence 999999999999998754
No 86
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.77 E-value=5.7e-20 Score=211.01 Aligned_cols=170 Identities=14% Similarity=0.192 Sum_probs=123.5
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC----hHhh--cccEEEEcCCCc-cc-ccc
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS----QASL--RQAIGVVPQDTV-LF-NNS 993 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~----~~sL--R~~Ig~VPQDp~-LF-nGT 993 (1192)
+.+.+|+. ++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..|+|++|++. ++ ..|
T Consensus 152 l~~~~g~v---i~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 152 LGFRKPAV---IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp CCSSSSEE---EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred eecCCCeE---EEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 66666666 9999999999999999999999999999999999986642 1222 567999999987 55 468
Q ss_pred HHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCC
Q psy13234 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGL 1073 (1192)
Q Consensus 994 IreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~ 1073 (1192)
+++||.++.....+. .+ ++.+++.+. .+..++
T Consensus 229 v~e~l~~~~~~~~d~-------------~l------------------------ldt~Gl~~~-------~~~~~~---- 260 (359)
T 2og2_A 229 LSKAVKRGKEEGYDV-------------VL------------------------CDTSGRLHT-------NYSLME---- 260 (359)
T ss_dssp HHHHHHHHHHTTCSE-------------EE------------------------EECCCCSSC-------CHHHHH----
T ss_pred HHHHHHHHHhCCCHH-------------HH------------------------HHhcCCChh-------hhhHHH----
Confidence 999997653100000 00 122332211 122222
Q ss_pred CCChHHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEec---------ChhHHH-hcCE
Q psy13234 1074 KLSGGEKQRVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH---------RLSTII-HADE 1141 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALLrdP~--ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAH---------RLSTI~-~aDr 1141 (1192)
.|| |||++||||+..+|+ +|+|| ||+++|+.+.. +.+.+ ..+.|+|++|| .++... ..+.
T Consensus 261 eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 261 ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 378 999999999999999 99999 99999998653 22332 24799999999 455553 4679
Q ss_pred EEEEeCCEE
Q psy13234 1142 ILVMHAGEI 1150 (1192)
Q Consensus 1142 IlVLe~G~I 1150 (1192)
|.++..|+.
T Consensus 333 I~~ig~Ge~ 341 (359)
T 2og2_A 333 VKFIGVGEA 341 (359)
T ss_dssp EEEEECSSS
T ss_pred EEEEeCCCC
Confidence 999999974
No 87
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.75 E-value=1.4e-20 Score=216.16 Aligned_cols=219 Identities=9% Similarity=0.000 Sum_probs=143.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccc-c-ccccc-ccccccccccccccccc
Q psy13234 824 QTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECRTISCI-C-HLTKA-VTRIVLKRIENKIEENM 900 (1192)
Q Consensus 824 g~iTvG~lvl~lsyi~ql~~PL~~l~~~~~~l~~a~~~~erl~~~~~~~~~~~~-~-~v~~~-~~~i~l~~~~g~I~~~f 900 (1192)
+.+|.|++..++.++.++..| .+......++.+..+.+|+....++...... . .+... ...+.+++.....+ |
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl~p~~~~~~~~~~ir~~~~~~itl~~l~~~g~--f 138 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVRPPACEHGTISVTIRKPSFTRRTLEDYAQQGF--F 138 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEECTTTBCTTCCEEEEECCCCCCCCHHHHHHTTT--T
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEecCccCCCCeEEEEEecCCCCCCHHHHHhcCC--c
Confidence 679999999988888877655 2222112223334445555554321100000 0 00000 00011111111224 9
Q ss_pred ccceee---ecC-CCCcc---------ccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q psy13234 901 EEDQFG---FRK-GKGTR---------DAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN 967 (1192)
Q Consensus 901 enVsFs---Y~~-~~~vL---------~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~D 967 (1192)
++++|+ |++ +++++ ++++ +.+++|+. ++|+||||||||||+++|.|+++|++|.|.++|.
T Consensus 139 ~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~---~~i~~G~~---i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~- 211 (361)
T 2gza_A 139 KHVRPMSKSLTPFEQELLALKEAGDYMSFLR---RAVQLERV---IVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV- 211 (361)
T ss_dssp SCCCCSCSCCCHHHHHHHHHHHHTCHHHHHH---HHHHTTCC---EEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS-
T ss_pred CccccccccccchhHHHHhhhhhHHHHHHHH---HHHhcCCE---EEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc-
Confidence 999999 854 23344 7777 88999888 9999999999999999999999999999999985
Q ss_pred cCCCChHhhcccEEEEc-CCCcc---ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHH
Q psy13234 968 IKTVSQASLRQAIGVVP-QDTVL---FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE 1043 (1192)
Q Consensus 968 I~~i~~~sLR~~Ig~VP-QDp~L---FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdee 1043 (1192)
.++.....|+++++++ |++.+ +..|+++||+++....+|..+..++
T Consensus 212 -~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~----------------------------- 261 (361)
T 2gza_A 212 -PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAEL----------------------------- 261 (361)
T ss_dssp -SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCC-----------------------------
T ss_pred -cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCc-----------------------------
Confidence 4666666889999999 99887 8999999998775433333332222
Q ss_pred HHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q psy13234 1044 VKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIART 1088 (1192)
Q Consensus 1044 I~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARA 1088 (1192)
+.+.+++++..+|.|++|.+++-+.+-+.+..+|++....
T Consensus 262 -----r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 262 -----RGGEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp -----CSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHT
T ss_pred -----hHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 4466778899999999999999998888999999988753
No 88
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.74 E-value=5e-21 Score=201.00 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=107.9
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccc---cHHHHHhc--ccc
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN---SIKFNIQY--ARI 1003 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnG---TIreNI~~--G~~ 1003 (1192)
+|+.+||+||||||||||+++|.|++.| +++||+||+++++. |+++|+.+ +.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~ 62 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHP 62 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCCCh
Confidence 3455999999999999999999999875 59999999999854 57677643 221
Q ss_pred CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q psy13234 1004 NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRV 1083 (1192)
Q Consensus 1004 ~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRI 1083 (1192)
+ ..+.+++.++++..++.+.+.. | ++++..|+++. |+||+
T Consensus 63 ~---------------------------------~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~ 102 (211)
T 3asz_A 63 D---------------------------------AFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPV 102 (211)
T ss_dssp G---------------------------------GBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEE
T ss_pred h---------------------------------hhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEe
Confidence 1 1223445555566655554433 3 44544444432 56899
Q ss_pred HHHHHhcCCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH--cCCceEEEEecCh
Q psy13234 1084 AIARTLLKAPQIVLLDEATSA-------LDTKTERNIQSALNRV--CASRTTIIVAHRL 1133 (1192)
Q Consensus 1084 ALARALLrdP~ILLLDEATSA-------LD~eTE~~Iq~aL~~l--~~grTvIvIAHRL 1133 (1192)
++||+++.+|+++++||||++ ||+.++..+++.+.+. .+|+|++.++|+.
T Consensus 103 ~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 103 RPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999 9999999999998765 3589999999984
No 89
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.74 E-value=1e-18 Score=218.84 Aligned_cols=186 Identities=18% Similarity=0.229 Sum_probs=131.1
Q ss_pred CCCCcHHHHHHHHhcC---------CCCCCceEEECCeecCC---CChHhhcccEEEEcCCCccccccHHHHHhccccCC
Q psy13234 938 QSGAGKSTIIRLLFRF---------YDVESGDIFIDNQNIKT---VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINA 1005 (1192)
Q Consensus 938 ~SGSGKSTLlrLLlRl---------ydp~sGsI~IDG~DI~~---i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~a 1005 (1192)
.|..||+++.+.+... |.|.+|+|+++|++|.+ .+.+++...+.-+||++..... +...+. .
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~---~~~~~~---~ 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHA---ERVKNR---P 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCST---TSSSSC---S
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhccc---chhhcc---h
Confidence 4567899988877652 46788999999999988 4555555555555555442221 111111 1
Q ss_pred CHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCccc-ccCCCCCCChHHHHHHH
Q psy13234 1006 SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQ-VGERGLKLSGGEKQRVA 1084 (1192)
Q Consensus 1006 sdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~-VGErG~~LSGGQKQRIA 1084 (1192)
.+.++.+.. -+++.+-++ .+..+ |++.. .+..-..|||||||||+
T Consensus 344 ~~~~i~~~i--------------------------~~ei~~rl~------~L~~v--GL~~l~l~r~~~tLSGGe~QRV~ 389 (842)
T 2vf7_A 344 EQAIALQRM--------------------------AADLVKRLD------VLLHL--GLGYLGLDRSTPTLSPGELQRLR 389 (842)
T ss_dssp SHHHHHHHH--------------------------HHHHHHHHH------HHHHT--TCTTSBTTCBGGGSCHHHHHHHH
T ss_pred hhHHHHHHH--------------------------HHHHHHHHH------HHHhC--CCCcCCccCCcCcCCHHHHHHHH
Confidence 122222211 112222111 11222 22211 34445589999999999
Q ss_pred HHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHhcCEEEEE------eCCEEEEEcC
Q psy13234 1085 IARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVM------HAGEIVERGR 1155 (1192)
Q Consensus 1085 LARALLrdP--~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~aDrIlVL------e~G~IvE~Gt 1155 (1192)
|||||.++| ++|||||||++||++..+.+.+.|+++.+ |.|+|+|+||+..+..||+|++| ++|+++..|+
T Consensus 390 LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~ 469 (842)
T 2vf7_A 390 LATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGP 469 (842)
T ss_dssp HHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEEC
T ss_pred HHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecC
Confidence 999999999 59999999999999999999999988754 69999999999999999999999 7999999999
Q ss_pred HHHHHhcC
Q psy13234 1156 HEELLERN 1163 (1192)
Q Consensus 1156 heELL~~~ 1163 (1192)
++++.+..
T Consensus 470 ~~~~~~~~ 477 (842)
T 2vf7_A 470 PEGLKHVP 477 (842)
T ss_dssp GGGGGGCT
T ss_pred HHHHHhch
Confidence 99998753
No 90
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.73 E-value=4.5e-18 Score=203.62 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=71.6
Q ss_pred CCC-ChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCC
Q psy13234 1073 LKL-SGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 1148 (1192)
Q Consensus 1073 ~~L-SGGQKQRIALARALLrdP--~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G 1148 (1192)
.+| |||||||++||||++.+| ++|||||||++||..+...|.+.|+++.+++|+|+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999887789999999999999999999999654
No 91
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.73 E-value=3.1e-20 Score=195.82 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=107.6
Q ss_pred ecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccc-cHHHHHhccc
Q psy13234 924 ALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIKFNIQYAR 1002 (1192)
Q Consensus 924 i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~ 1002 (1192)
+.+|+. ++|+||||||||||+++|.|+++ .|.+++.....-.....++.++|++|++.+|.. |+.+|+....
T Consensus 17 i~~Gei---~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~ 89 (207)
T 1znw_A 17 AAVGRV---VVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWA 89 (207)
T ss_dssp --CCCE---EEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred CCCCCE---EEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeeh
Confidence 445555 99999999999999999999996 345554222111112346789999999988763 4444542110
Q ss_pred -------c-CCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHH------HHHcChHHHHhcCCCCCcccc
Q psy13234 1003 -------I-NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA------ATSADIHERILSFPDGYDTQV 1068 (1192)
Q Consensus 1003 -------~-~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~A------L~~A~Lhd~I~~LP~GyDT~V 1068 (1192)
. ..+.+++.+.+ .++ ++..++.+.....|..
T Consensus 90 ~~~~n~~~~g~~~~~~~~~~------------------------------~~~~~~~~~l~~~gl~~~~~~~~~~----- 134 (207)
T 1znw_A 90 EIHGGLHRSGTLAQPVRAAA------------------------------ATGVPVLIEVDLAGARAIKKTMPEA----- 134 (207)
T ss_dssp EEGGGTEEEEEEHHHHHHHH------------------------------HHTCCEEEECCHHHHHHHHHHCTTS-----
T ss_pred hhcCchhhcCCcHHHHHHHH------------------------------HcCCeEEEEeCHHHHHHHHHhcCCc-----
Confidence 0 01122222222 111 2333444444444432
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHc--CCceEEEEecChhHHH-hcCE
Q psy13234 1069 GERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL----DTKTERNIQSALNRVC--ASRTTIIVAHRLSTII-HADE 1141 (1192)
Q Consensus 1069 GErG~~LSGGQKQRIALARALLrdP~ILLLDEATSAL----D~eTE~~Iq~aL~~l~--~grTvIvIAHRLSTI~-~aDr 1141 (1192)
|| |++.+|++++|||||+++ |+.+.+.+.+.++++. .+.|+|+|||+++.+. .||+
T Consensus 135 ------lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 135 ------VT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVS 197 (207)
T ss_dssp ------EE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHH
T ss_pred ------EE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHH
Confidence 33 899999999999999998 7778899999888875 3689999999999875 5999
Q ss_pred EEEEe
Q psy13234 1142 ILVMH 1146 (1192)
Q Consensus 1142 IlVLe 1146 (1192)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99985
No 92
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.73 E-value=3.2e-20 Score=212.58 Aligned_cols=142 Identities=15% Similarity=0.230 Sum_probs=99.2
Q ss_pred eeecC--CcccceEEEEcCCCCcHHHHHHHHhcCCCCCC----ceEEE----CCeecCCCChHhhcccEEEEcCCCcccc
Q psy13234 922 MIALE--SQLVWYLLQVGQSGAGKSTIIRLLFRFYDVES----GDIFI----DNQNIKTVSQASLRQAIGVVPQDTVLFN 991 (1192)
Q Consensus 922 ~~i~~--Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~s----GsI~I----DG~DI~~i~~~sLR~~Ig~VPQDp~LFn 991 (1192)
+.+.+ |++ ++|+||||||||||+++|.|+++|++ |+|.+ +|.++ .++.+++ ++|++++|++.+|+
T Consensus 163 ~~v~~~lg~k---~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~~ 237 (365)
T 1lw7_A 163 KEARPFFAKT---VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDYA 237 (365)
T ss_dssp TTTGGGTCEE---EEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhCe---EEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHHH
Confidence 55555 555 99999999999999999999999999 99987 46666 5666667 66999999999999
Q ss_pred ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCC--Ccc---
Q psy13234 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDG--YDT--- 1066 (1192)
Q Consensus 992 GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~G--yDT--- 1066 (1192)
+|++|||.+++++..+.++.... ...+..+.+..++.+ +|.
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~i~~~~~~~~~~lllL 283 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQ----------------------------------YEGKAHPFLDSMIKEYPFDVTIL 283 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHH----------------------------------HHSCCCHHHHHHHHHSCCSEEEE
T ss_pred HhccCCEEEEeCCchHHHHHHHH----------------------------------HcCCCCHHHHHHHhhcCCCEEEE
Confidence 99999999876554444443333 222223333333322 332
Q ss_pred -----cccCCCCCCChHHHHHHHHHHHh---cC--CCCEEEEeCCC
Q psy13234 1067 -----QVGERGLKLSGGEKQRVAIARTL---LK--APQIVLLDEAT 1102 (1192)
Q Consensus 1067 -----~VGErG~~LSGGQKQRIALARAL---Lr--dP~ILLLDEAT 1102 (1192)
+..++|.++|+||+||++++|++ ++ +++|+++||||
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 44478889999999999999999 77 89999999997
No 93
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.71 E-value=8e-19 Score=200.75 Aligned_cols=190 Identities=17% Similarity=0.169 Sum_probs=138.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC-------CC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT-------VS 972 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~-------i~ 972 (1192)
.+++++.|..+..+++++ +.+.+|+. ++|+||||||||||+++|.|+.+|+.|.|.++|++.++ ..
T Consensus 48 ~~~l~~~~~tg~~ald~l----l~i~~Gq~---~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 48 RQVIDQPFILGVRAIDGL----LTCGIGQR---IGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CCCCCSEECCSCHHHHHH----SCEETTCE---EEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred ecccceecCCCCEEEEee----eeecCCCE---EEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 788888887555555554 66777766 99999999999999999999999999999999976322 23
Q ss_pred hHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 973 QASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 973 ~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
...+++.+.+++|... +..+++ ..+. ....
T Consensus 121 ~~~~~~~v~~~~~~~~----~~~~r~------------~~~~----------------------------------~~~~ 150 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR----PALERM------------KAAF----------------------------------TATT 150 (347)
T ss_dssp HHHHTTEEEEEECTTS----CHHHHH------------HHHH----------------------------------HHHH
T ss_pred hhhhhceEEEEECCCC----CHHHHH------------HHHH----------------------------------HHHH
Confidence 3446667778877431 112222 1111 1112
Q ss_pred hHHHHhcCCCCCcccc-cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---Cc----
Q psy13234 1053 IHERILSFPDGYDTQV-GERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA---SR---- 1124 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~V-GErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~---gr---- 1124 (1192)
+.+.... .|.+..+ -+.-.+||+|| ||+++| +.+|++ |+++|+.....+.+.+++..+ |.
T Consensus 151 ~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~ 218 (347)
T 2obl_A 151 IAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAI 218 (347)
T ss_dssp HHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEE
T ss_pred HHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeE
Confidence 2222111 2222111 12356899999 999999 689988 999999999999999988753 66
Q ss_pred -eEEEEecChhHHHhcCEEEEEeCCEEEEEcCHHHH
Q psy13234 1125 -TTIIVAHRLSTIIHADEILVMHAGEIVERGRHEEL 1159 (1192)
Q Consensus 1125 -TvIvIAHRLSTI~~aDrIlVLe~G~IvE~GtheEL 1159 (1192)
|++++||+++ -.-||+++++.||+|+..|+.+|+
T Consensus 219 ~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 219 YTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp EEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred EEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 8999999999 667999999999999999988776
No 94
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.71 E-value=7.8e-17 Score=183.04 Aligned_cols=77 Identities=29% Similarity=0.408 Sum_probs=69.3
Q ss_pred CCCChHHHH------HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEEEE
Q psy13234 1073 LKLSGGEKQ------RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVM 1145 (1192)
Q Consensus 1073 ~~LSGGQKQ------RIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIlVL 1145 (1192)
..||||||| |+++|||+..+|++|+|||||++||+++.+.+.+.|++.. +++|+|+|||+.+....||+|++|
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l 326 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEE
Confidence 579999999 7788999999999999999999999999999999998864 468999999999888899999998
Q ss_pred e--CCE
Q psy13234 1146 H--AGE 1149 (1192)
Q Consensus 1146 e--~G~ 1149 (1192)
+ +|.
T Consensus 327 ~~~~g~ 332 (339)
T 3qkt_A 327 SLENGS 332 (339)
T ss_dssp EEETTE
T ss_pred EecCCc
Confidence 5 554
No 95
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.71 E-value=4.4e-18 Score=188.52 Aligned_cols=181 Identities=12% Similarity=0.077 Sum_probs=117.5
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEECCeecCCCChHhhcccEEEEcCCCccc
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESG-DIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sG-sI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LF 990 (1192)
+.+++++ +.+.+|+. ++|+||+|||||||++.|++...|++| +|.+.+.+. +.+.+++++..+.|+..+
T Consensus 23 ~~Ld~i~---~~l~~G~~---~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~- 92 (296)
T 1cr0_A 23 TGINDKT---LGARGGEV---IMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL- 92 (296)
T ss_dssp TTHHHHH---CSBCTTCE---EEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG-
T ss_pred HHHHHHh---cCCCCCeE---EEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh-
Confidence 4567776 77777777 999999999999999999999999988 776554432 456666666555554432
Q ss_pred cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccC
Q psy13234 991 NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGE 1070 (1192)
Q Consensus 991 nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGE 1070 (1192)
+..+|+..+. .++++..+++ +. .+...+-+ +.+
T Consensus 93 --~~~~~l~~~~--~~~~~~~~~~----------------------------------~~-----~l~~~~l~----i~~ 125 (296)
T 1cr0_A 93 --RQSDSLKREI--IENGKFDQWF----------------------------------DE-----LFGNDTFH----LYD 125 (296)
T ss_dssp --GGCHHHHHHH--HHHTHHHHHH----------------------------------HH-----HHSSSCEE----EEC
T ss_pred --hhccccccCC--CCHHHHHHHH----------------------------------HH-----HhccCCEE----EEC
Confidence 2334554331 1112221111 11 11111111 222
Q ss_pred CCCCCChHH-HHHHHHHHHhcCCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHcC--CceEEEEecCh--h----
Q psy13234 1071 RGLKLSGGE-KQRVAIARTLLKAPQIVLLDEATS---A---LDT-KTERNIQSALNRVCA--SRTTIIVAHRL--S---- 1134 (1192)
Q Consensus 1071 rG~~LSGGQ-KQRIALARALLrdP~ILLLDEATS---A---LD~-eTE~~Iq~aL~~l~~--grTvIvIAHRL--S---- 1134 (1192)
...++|.+| +||+. |+|+..+|+++|+||||+ + +|. +.-..+.+.|+++.+ ++|+|+++|.. +
T Consensus 126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~ 204 (296)
T 1cr0_A 126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKA 204 (296)
T ss_dssp CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-------
T ss_pred CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccc
Confidence 223688999 77777 999999999999999999 4 444 455677778877643 79999999995 3
Q ss_pred ----------------HH-HhcCEEEEEeCCEE
Q psy13234 1135 ----------------TI-IHADEILVMHAGEI 1150 (1192)
Q Consensus 1135 ----------------TI-~~aDrIlVLe~G~I 1150 (1192)
.+ ..||+|++|++|+.
T Consensus 205 ~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 205 HEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----------CCC---CHHHHCSEEEEEEEC--
T ss_pred cccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 34 47999999999875
No 96
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.71 E-value=1.1e-17 Score=210.45 Aligned_cols=93 Identities=29% Similarity=0.468 Sum_probs=85.7
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEEEE-
Q psy13234 1070 ERGLKLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVM- 1145 (1192)
Q Consensus 1070 ErG~~LSGGQKQRIALARALLrdP--~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIlVL- 1145 (1192)
..-..|||||||||+||+||..+| ++|||||||++||++.-+.+.+.|+++. .|.|+|+|+||++.+..||+|++|
T Consensus 500 R~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lg 579 (972)
T 2r6f_A 500 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIG 579 (972)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEEC
T ss_pred CccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeC
Confidence 334579999999999999999985 9999999999999999999999998875 479999999999999999999999
Q ss_pred -----eCCEEEEEcCHHHHHhc
Q psy13234 1146 -----HAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1146 -----e~G~IvE~GtheELL~~ 1162 (1192)
++|+++..|+++++++.
T Consensus 580 pgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 580 PGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp SSSGGGCCSEEEEECTTTTTTC
T ss_pred CCccCCCCEEEEecCHHHHHhh
Confidence 79999999999999874
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.70 E-value=3.8e-17 Score=165.66 Aligned_cols=88 Identities=25% Similarity=0.299 Sum_probs=76.7
Q ss_pred CCcccc-----cCCCCCCChHHHHHHHHH------HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEe
Q psy13234 1063 GYDTQV-----GERGLKLSGGEKQRVAIA------RTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVA 1130 (1192)
Q Consensus 1063 GyDT~V-----GErG~~LSGGQKQRIALA------RALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIA 1130 (1192)
+|++.+ .....+||||||||++|| ||++++|++++|||||++||+++.+.+.+.|++.. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677775 234568999999999876 99999999999999999999999999999999874 479999999
Q ss_pred cChhHHHhcCEEEEE--eCCEE
Q psy13234 1131 HRLSTIIHADEILVM--HAGEI 1150 (1192)
Q Consensus 1131 HRLSTI~~aDrIlVL--e~G~I 1150 (1192)
|++.....||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999777789999999 56643
No 98
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.68 E-value=3.3e-17 Score=191.53 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=68.4
Q ss_pred CCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecChhHHHhcCEEEEEe
Q psy13234 1074 KLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVMH 1146 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALL----rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI~~aDrIlVLe 1146 (1192)
.||||||||++|||++. ++|+++|||||||+||+.+.+.+.+.|++..+ +.|+|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999998 78999999999999999999999999998764 689999999999999999999986
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.68 E-value=5.8e-19 Score=211.71 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=119.7
Q ss_pred eecCCCCccccccccce-eecCCcccceEEEEcCCCCcHHHHHHH--HhcCCCCCCceEEECCeecCCCChHhhcccEEE
Q psy13234 906 GFRKGKGTRDAIGCLRM-IALESQLVWYLLQVGQSGAGKSTIIRL--LFRFYDVESGDIFIDNQNIKTVSQASLRQAIGV 982 (1192)
Q Consensus 906 sY~~~~~vL~~ISvL~~-~i~~Ge~Ge~VAIVG~SGSGKSTLlrL--LlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~ 982 (1192)
.|+.+.+.+++++ + .+++|+. ++|+||||||||||++. +.|+.+|.+|+|+++|.+. ..+....++++|+
T Consensus 20 ~~~~g~~~Ld~i~---~G~i~~Ge~---~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~ 92 (525)
T 1tf7_A 20 KMRTMIEGFDDIS---HGGLPIGRS---TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGW 92 (525)
T ss_dssp EECCCCTTHHHHT---TSSEETTSE---EEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTC
T ss_pred cccCCchhHHHhc---CCCCCCCeE---EEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCC
Confidence 4555677889998 8 8899888 99999999999999999 6899999999999999883 2334456678999
Q ss_pred EcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCC
Q psy13234 983 VPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062 (1192)
Q Consensus 983 VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~ 1062 (1192)
++|++... +|+.+-....+ ++..+ +++..++.+...+.
T Consensus 93 ~~q~~~~~-----~~l~~~~~~~~-~~~~~----------------------------------~l~~~~l~~~~~~~-- 130 (525)
T 1tf7_A 93 DLAKLVDE-----GKLFILDASPD-PEGQE----------------------------------VVGGFDLSALIERI-- 130 (525)
T ss_dssp CHHHHHHT-----TSEEEEECCCC-SSCCS----------------------------------CCSSHHHHHHHHHH--
T ss_pred ChHHhhcc-----CcEEEEecCcc-cchhh----------------------------------hhcccCHHHHHHHH--
Confidence 99987631 12221110000 00000 00111121111111
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHc-CCceEEEEecChhHH
Q psy13234 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA-----LDTKTERNIQSALNRVC-ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1063 GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSA-----LD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI 1136 (1192)
-..|||| +|++++|||||+. +|+...+.+.+.++++. +|+|+|+|+|+++.+
T Consensus 131 ---------~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 131 ---------NYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp ---------HHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred ---------HHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 1124555 4779999999984 68899999998887764 479999999999874
Q ss_pred ---------Hh-cCEEEEEeCC
Q psy13234 1137 ---------IH-ADEILVMHAG 1148 (1192)
Q Consensus 1137 ---------~~-aDrIlVLe~G 1148 (1192)
.. ||+|++|++|
T Consensus 189 ~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 189 GPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp SCSSTTSCHHHHCSEEEEEEEE
T ss_pred cccccccceeeeeeEEEEEEEE
Confidence 44 9999999983
No 100
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.67 E-value=5.7e-19 Score=197.29 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=96.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEE 1009 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEe 1009 (1192)
+..+||+|+||||||||+++|.+++++. | . + ++.+.+|+||+++|++++++|+.++.++-.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~--- 91 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNK--- 91 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCG---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccc---
Confidence 3459999999999999999999999874 2 0 1 556777799999999999999988643200
Q ss_pred HHHHhhhhhhhhhhc--cCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCccc------ccCCCCCCChHHHH
Q psy13234 1010 VKEAATSADIHERIL--SFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQ------VGERGLKLSGGEKQ 1081 (1192)
Q Consensus 1010 V~eAa~~a~lh~~i~--~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~------VGErG~~LSGGQKQ 1081 (1192)
... ..|+.+ +.+.+.+++.++++|++|. +.+.+.++||||+|
T Consensus 92 ------------l~~~~g~p~a~------------------d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~ 141 (290)
T 1odf_A 92 ------------LLQGRGLPGTH------------------DMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 141 (290)
T ss_dssp ------------GGSSSCSTTSB------------------CHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCE
T ss_pred ------------hhhhccCcchh------------------HHHHHHHHHHHhhccCccccCcceeeccCccccCCcccc
Confidence 000 112222 3345678889999998875 45667899999999
Q ss_pred HHHHH--HHhcCCCCEEEEeCCCCCCCHHH
Q psy13234 1082 RVAIA--RTLLKAPQIVLLDEATSALDTKT 1109 (1192)
Q Consensus 1082 RIALA--RALLrdP~ILLLDEATSALD~eT 1109 (1192)
|+++| |++ +|+|+|+||+|+++|+++
T Consensus 142 R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 142 RCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccceEc--CCCEEEEeCccccCCccc
Confidence 99998 666 899999999999999864
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.67 E-value=4.6e-17 Score=195.24 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=112.3
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHh-c
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQ-Y 1000 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~-~ 1000 (1192)
..+.+|+. ++|+|++|||||||++.+++...|+ |+ +.+.+++|++. .++++|.. +
T Consensus 276 g~i~~G~i---~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~ 331 (525)
T 1tf7_A 276 GGFFKDSI---ILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSW 331 (525)
T ss_dssp SSEESSCE---EEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTT
T ss_pred CCCCCCcE---EEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHc
Confidence 56667666 9999999999999999999998875 43 12567788873 35665542 2
Q ss_pred cccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHH
Q psy13234 1001 ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEK 1080 (1192)
Q Consensus 1001 G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQK 1080 (1192)
| .+.+++ ... |+..........|||||+
T Consensus 332 g---~~~~~~--------------------------------------~~~-----------g~~~~~~~~p~~LS~g~~ 359 (525)
T 1tf7_A 332 G---MDFEEM--------------------------------------ERQ-----------NLLKIVCAYPESAGLEDH 359 (525)
T ss_dssp S---CCHHHH--------------------------------------HHT-----------TSEEECCCCGGGSCHHHH
T ss_pred C---CCHHHH--------------------------------------HhC-----------CCEEEEEeccccCCHHHH
Confidence 1 111110 111 111122223357999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHc-CCceEEEEecCh----------hHHH-hcCEEE
Q psy13234 1081 QRVAIARTLLKAPQIVLLDEATSALDTK-----TERNIQSALNRVC-ASRTTIIVAHRL----------STII-HADEIL 1143 (1192)
Q Consensus 1081 QRIALARALLrdP~ILLLDEATSALD~e-----TE~~Iq~aL~~l~-~grTvIvIAHRL----------STI~-~aDrIl 1143 (1192)
||+++||++..+|+++|+| ||++||.. ..+.+.+.++.+. .+.|+|+|+|.. ..+. .||+|+
T Consensus 360 q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 360 LQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEE
Confidence 9999999999999999999 99999999 8888887777654 479999999998 5554 589999
Q ss_pred EEeCCE
Q psy13234 1144 VMHAGE 1149 (1192)
Q Consensus 1144 VLe~G~ 1149 (1192)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
No 102
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.67 E-value=1.6e-18 Score=187.47 Aligned_cols=176 Identities=11% Similarity=0.146 Sum_probs=109.5
Q ss_pred CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcc
Q psy13234 910 GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 989 (1192)
Q Consensus 910 ~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~L 989 (1192)
++++++++| +.+.+|+. +||+||+||||||++++|.+++ |.+.+| ..++.+++++||++.
T Consensus 11 ~~~~l~~is---l~i~~g~i---igI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~ 70 (245)
T 2jeo_A 11 VDLGTENLY---FQSMRPFL---IGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFY 70 (245)
T ss_dssp ---------------CCSEE---EEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGB
T ss_pred Cceeeccee---ccCCCCEE---EEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCc
Confidence 456888888 88888877 9999999999999999999976 666554 468899999999754
Q ss_pred ccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCccccc
Q psy13234 990 FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVG 1069 (1192)
Q Consensus 990 FnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VG 1069 (1192)
..-|..+|+++..... .+.++ ...+.+++.+.|+. +.++.+..+
T Consensus 71 ~~l~~~~~~~~~~~~~-------------------~~~~~-------~~~~~~~~~~~L~~---------l~~~~~~~~- 114 (245)
T 2jeo_A 71 KVLTAEQKAKALKGQY-------------------NFDHP-------DAFDNDLMHRTLKN---------IVEGKTVEV- 114 (245)
T ss_dssp CCCCHHHHHHHHTTCC-------------------CTTSG-------GGBCHHHHHHHHHH---------HHTTCCEEE-
T ss_pred cccCHhHhhhhhccCC-------------------CCCCc-------ccccHHHHHHHHHH---------HHCCCCeec-
Confidence 4468999986532100 00000 01122333333332 223445444
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHH-Hhc-CEEEEEeC
Q psy13234 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI-IHA-DEILVMHA 1147 (1192)
Q Consensus 1070 ErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI-~~a-DrIlVLe~ 1147 (1192)
..||+||+||+++ |++..+|+++|||||....|.+ +.+. .+.|++++||....+ +.. +.+ ++
T Consensus 115 ---~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~ 178 (245)
T 2jeo_A 115 ---PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RR 178 (245)
T ss_dssp ---CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C-
T ss_pred ---ccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---Hc
Confidence 3699999999998 6899999999999998887764 2222 488999999974433 333 334 66
Q ss_pred CEEEEEcCHHHHHhc
Q psy13234 1148 GEIVERGRHEELLER 1162 (1192)
Q Consensus 1148 G~IvE~GtheELL~~ 1162 (1192)
|+ +.+++.++
T Consensus 179 G~-----~~e~~~~~ 188 (245)
T 2jeo_A 179 GR-----DLEQILTQ 188 (245)
T ss_dssp -------CHHHHHHH
T ss_pred CC-----CHHHHHHH
Confidence 75 67777643
No 103
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.67 E-value=1.2e-17 Score=187.68 Aligned_cols=149 Identities=19% Similarity=0.154 Sum_probs=101.8
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-hH---hh--cccEEEEcCCCcccc-ccHHHHHhcc
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QA---SL--RQAIGVVPQDTVLFN-NSIKFNIQYA 1001 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~-~~---sL--R~~Ig~VPQDp~LFn-GTIreNI~~G 1001 (1192)
.|+.++|||||||||||+++.|.|+++|++|+|.++|.|+.... .+ .+ |..+++|+|++.+++ .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45669999999999999999999999999999999999987654 12 22 467999999998776 4788888653
Q ss_pred ccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHH
Q psy13234 1002 RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQ 1081 (1192)
Q Consensus 1002 ~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQ 1081 (1192)
.. + +.+..+...+...+. ....++..+||
T Consensus 181 ~~---------------------------------------------~--~~d~~llDt~G~~~~----~~~~~~eLs~~ 209 (304)
T 1rj9_A 181 KA---------------------------------------------R--GYDLLFVDTAGRLHT----KHNLMEELKKV 209 (304)
T ss_dssp HH---------------------------------------------H--TCSEEEECCCCCCTT----CHHHHHHHHHH
T ss_pred Hh---------------------------------------------C--CCCEEEecCCCCCCc----hHHHHHHHHHH
Confidence 10 0 000001111111111 11124667799
Q ss_pred HHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEecChhH
Q psy13234 1082 RVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLST 1135 (1192)
Q Consensus 1082 RIALARALLrdP~--ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAHRLST 1135 (1192)
|.+||||+..+|+ +++|| |+++. .+.+.+++.. .+.|+|+|||...+
T Consensus 210 r~~iaRal~~~P~~~lLvLD-a~t~~------~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 210 KRAIAKADPEEPKEVWLVLD-AVTGQ------NGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHCTTCCSEEEEEEE-TTBCT------HHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHhhcCCCCeEEEEEc-HHHHH------HHHHHHHHHHHHcCCcEEEEECCccc
Confidence 9999999999999 55666 44443 3333333322 37899999997654
No 104
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.65 E-value=1.8e-17 Score=212.01 Aligned_cols=167 Identities=18% Similarity=0.166 Sum_probs=112.9
Q ss_pred ceeeecCCCCccccccccceeecC----CcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcc
Q psy13234 903 DQFGFRKGKGTRDAIGCLRMIALE----SQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978 (1192)
Q Consensus 903 VsFsY~~~~~vL~~ISvL~~~i~~----Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~ 978 (1192)
+.+.|+.++.++++++ +.+.+ +..|+.++|+||+||||||++|.+ |+..+ ..
T Consensus 761 l~~~~~~~~~v~ndi~---l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~a 816 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDIL---IGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MA 816 (1022)
T ss_dssp ------CCCCCCEEEE---ESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HH
T ss_pred EEEEecCCceEeeeee---eccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------Hh
Confidence 7777755567888888 77665 122455999999999999999999 99864 34
Q ss_pred cEE-EEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHH
Q psy13234 979 AIG-VVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERI 1057 (1192)
Q Consensus 979 ~Ig-~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I 1057 (1192)
++| ||||++. .-|+.|||. . ..++.|.+
T Consensus 817 qiG~~Vpq~~~--~l~v~d~I~-~------------------------------------------------rig~~d~~ 845 (1022)
T 2o8b_B 817 QMGCYVPAEVC--RLTPIDRVF-T------------------------------------------------RLGASDRI 845 (1022)
T ss_dssp TTTCCEESSEE--EECCCSBEE-E------------------------------------------------ECC-----
T ss_pred heeEEeccCcC--CCCHHHHHH-H------------------------------------------------HcCCHHHH
Confidence 566 9999984 556666652 1 11222222
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHc-C-CceEEEEecChh
Q psy13234 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-RNIQSALNRVC-A-SRTTIIVAHRLS 1134 (1192)
Q Consensus 1058 ~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE-~~Iq~aL~~l~-~-grTvIvIAHRLS 1134 (1192)
. .|. ..+|+|+++ +++||++..+|+++||||||+++|+... ..+.+.|+++. + ++|+|++||.++
T Consensus 846 ~---~~~--------stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 846 M---SGE--------STFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp ---------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred h---hch--------hhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 1 122 356777665 9999999999999999999999999874 44567777664 3 799999999999
Q ss_pred HHHh-cCEEEEEeCCEEE--EEcCHH
Q psy13234 1135 TIIH-ADEILVMHAGEIV--ERGRHE 1157 (1192)
Q Consensus 1135 TI~~-aDrIlVLe~G~Iv--E~Gthe 1157 (1192)
.+.. +|++.|+ +|+++ +.|+.+
T Consensus 914 l~~~~~d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 914 LVEDYSQNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp HHHHTSSCSSEE-EEEEEEC------
T ss_pred HHHHhCCcceee-cCeEEEEEecCcc
Confidence 8865 8988886 58887 555543
No 105
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.65 E-value=4.4e-16 Score=196.56 Aligned_cols=93 Identities=35% Similarity=0.519 Sum_probs=85.8
Q ss_pred CCCCCCChHHHHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCceEEEEecChhHHHhcCEEEEE-
Q psy13234 1070 ERGLKLSGGEKQRVAIARTLLKA--PQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVM- 1145 (1192)
Q Consensus 1070 ErG~~LSGGQKQRIALARALLrd--P~ILLLDEATSALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI~~aDrIlVL- 1145 (1192)
..-..|||||||||+||+||..+ |++|||||||++||++.-+.+.+.|+++. .|.|+|+|+||+..+..||+|++|
T Consensus 517 r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lg 596 (993)
T 2ygr_A 517 RAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIG 596 (993)
T ss_dssp CBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEEC
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEec
Confidence 33457999999999999999998 58999999999999999999999998775 479999999999999999999999
Q ss_pred -----eCCEEEEEcCHHHHHhc
Q psy13234 1146 -----HAGEIVERGRHEELLER 1162 (1192)
Q Consensus 1146 -----e~G~IvE~GtheELL~~ 1162 (1192)
++|+++..|+++++++.
T Consensus 597 p~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 597 PGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp SSSGGGCCSCCEEECHHHHHHC
T ss_pred CccccCCCEEEEeeCHHHhhhh
Confidence 79999999999999975
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.65 E-value=2.2e-17 Score=173.95 Aligned_cols=148 Identities=18% Similarity=0.214 Sum_probs=98.4
Q ss_pred eecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC-------CCceEEECCeecCCCChHhhcccEEEEcCCCccccccHH
Q psy13234 923 IALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-------ESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995 (1192)
Q Consensus 923 ~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp-------~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIr 995 (1192)
-+++|+. ++|+||||||||||++.|+|.+.+ ..|.|.+++.+. .+ ++++++++|+..++..|+.
T Consensus 21 gi~~G~~---~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~ 91 (231)
T 4a74_A 21 GIETQAI---TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVL 91 (231)
T ss_dssp SEESSEE---EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHH
T ss_pred CCCCCcE---EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHh
Confidence 3455555 999999999999999999996655 445888888652 11 2356677888888888888
Q ss_pred HHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCC
Q psy13234 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKL 1075 (1192)
Q Consensus 996 eNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~L 1075 (1192)
+|+.+..+....
T Consensus 92 ~~~~~~~~~~~~-------------------------------------------------------------------- 103 (231)
T 4a74_A 92 KHIYVARAFNSN-------------------------------------------------------------------- 103 (231)
T ss_dssp HTEEEEECCSHH--------------------------------------------------------------------
T ss_pred hcEEEEecCChH--------------------------------------------------------------------
Confidence 888765421111
Q ss_pred ChHHHHHHHHHHHh-------cCCCCEEEEeCCCCCCCHH-------HH-----HHHHHHHHHHc--CCceEEEEec---
Q psy13234 1076 SGGEKQRVAIARTL-------LKAPQIVLLDEATSALDTK-------TE-----RNIQSALNRVC--ASRTTIIVAH--- 1131 (1192)
Q Consensus 1076 SGGQKQRIALARAL-------LrdP~ILLLDEATSALD~e-------TE-----~~Iq~aL~~l~--~grTvIvIAH--- 1131 (1192)
.|++++..++++ ..+|+++++||||+.+|++ .+ +.+.+.|.+.. .++|+|+|+|
T Consensus 104 --~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~ 181 (231)
T 4a74_A 104 --HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 181 (231)
T ss_dssp --HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred --HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeeccc
Confidence 111222222222 2489999999999999984 22 24555555543 3799999999
Q ss_pred -ChhHHHh-cCEEEEEeCCE
Q psy13234 1132 -RLSTIIH-ADEILVMHAGE 1149 (1192)
Q Consensus 1132 -RLSTI~~-aDrIlVLe~G~ 1149 (1192)
....+.+ ||++++|++|+
T Consensus 182 ~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 182 NGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp --------CCSEEEEEEECT
T ss_pred CcchhhHhhceEEEEEEecC
Confidence 4444654 89999998753
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.64 E-value=8.3e-18 Score=192.30 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=114.5
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCC--CCCC----ce-EEECCeecCCCChHhhcccEEEEcCCCccccccH
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY--DVES----GD-IFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 994 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRly--dp~s----Gs-I~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTI 994 (1192)
+.+++|+. ++|+||+|||||||++.+++.+ +|++ |+ |+||+.+.- .++++++++|++.++..|+
T Consensus 126 ggi~~G~i---~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~~v 196 (349)
T 1pzn_A 126 GGIETQAI---TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPDEV 196 (349)
T ss_dssp SSEESSEE---EEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHHHH
T ss_pred CCCCCCeE---EEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHHHH
Confidence 66777777 9999999999999999999998 6666 67 999998751 2567888999999998899
Q ss_pred HHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCC
Q psy13234 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLK 1074 (1192)
Q Consensus 995 reNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~ 1074 (1192)
.+||.+.+.. +
T Consensus 197 ~~ni~~~~~~------------------------------------------------------------~--------- 207 (349)
T 1pzn_A 197 LKHIYVARAF------------------------------------------------------------N--------- 207 (349)
T ss_dssp GGGEEEEECC------------------------------------------------------------S---------
T ss_pred hhCEEEEecC------------------------------------------------------------C---------
Confidence 9998764310 0
Q ss_pred CChHHHHHHHHHHHhc-------CCCCEEEEeCCCCCCCHHH-------H-----HHHHHHHHHHc--CCceEEEEecCh
Q psy13234 1075 LSGGEKQRVAIARTLL-------KAPQIVLLDEATSALDTKT-------E-----RNIQSALNRVC--ASRTTIIVAHRL 1133 (1192)
Q Consensus 1075 LSGGQKQRIALARALL-------rdP~ILLLDEATSALD~eT-------E-----~~Iq~aL~~l~--~grTvIvIAHRL 1133 (1192)
|++|+|++.+||+++ .+|+++|+||||+.+|++. + +.+.+.|.++. .++|+|+++|..
T Consensus 208 -~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~ 286 (349)
T 1pzn_A 208 -SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 286 (349)
T ss_dssp -HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred -hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc
Confidence 456777777777777 6899999999999999863 2 33344444443 379999999987
Q ss_pred hHHHh-cCEEEEEeCCEEEEEcCHHHHH
Q psy13234 1134 STIIH-ADEILVMHAGEIVERGRHEELL 1160 (1192)
Q Consensus 1134 STI~~-aDrIlVLe~G~IvE~GtheELL 1160 (1192)
+.... ++.+.+...|++.+.+.+..|.
T Consensus 287 ~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 287 ARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp ---------------CCCCCTTCSEEEE
T ss_pred cccccccCCccccCCcceEeecCcEEEE
Confidence 75432 3456778889988888877764
No 108
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.63 E-value=5.9e-16 Score=160.84 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=72.7
Q ss_pred CCCCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEE--
Q psy13234 1072 GLKLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM-- 1145 (1192)
Q Consensus 1072 G~~LSGGQKQRIALARALL----rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVL-- 1145 (1192)
...||||||||++||||+. ++|+++|||||||+||+.+++.+.+.|++..++.++|+||||..++..||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 6789999999999999999999999999998889999999999999999999854
Q ss_pred eCCEEE
Q psy13234 1146 HAGEIV 1151 (1192)
Q Consensus 1146 e~G~Iv 1151 (1192)
++|...
T Consensus 142 ~~g~s~ 147 (173)
T 3kta_B 142 RDGVSK 147 (173)
T ss_dssp ETTEEE
T ss_pred cCCEEE
Confidence 577543
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.58 E-value=3.9e-17 Score=199.38 Aligned_cols=162 Identities=14% Similarity=0.255 Sum_probs=113.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCeecCCC---ChHhhcccEEEEcCCCcccc-ccHHHHHhccccCCCH
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDV-ESGDIFIDNQNIKTV---SQASLRQAIGVVPQDTVLFN-NSIKFNIQYARINASE 1007 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp-~sGsI~IDG~DI~~i---~~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~asd 1007 (1192)
+|||||||||||||+++|.|++.| ++|.|.++|.++... ....+|++|+|++|++.+++ .|+++||.++.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~----- 122 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ----- 122 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-----
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-----
Confidence 999999999999999999999988 799999999996322 24578999999999998876 58999986431
Q ss_pred HHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q psy13234 1008 EEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIAR 1087 (1192)
Q Consensus 1008 EeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALAR 1087 (1192)
+. +.. .+..+| ++++.+++
T Consensus 123 -----------------------------------------~~------~~~-----------~~~~~s---~~~i~l~i 141 (608)
T 3szr_A 123 -----------------------------------------NA------IAG-----------EGMGIS---HELITLEI 141 (608)
T ss_dssp -----------------------------------------HH------HHC-----------SSSCCC---SCCEEEEE
T ss_pred -----------------------------------------HH------hcC-----------Cccccc---hHHHHHHh
Confidence 00 000 001111 24445555
Q ss_pred HhcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHcC---CceEEEEecChhH--------HHh-----cCEEEEE
Q psy13234 1088 TLLKAPQIVLLDEA------TSALDTKTERNIQSALNRVCA---SRTTIIVAHRLST--------IIH-----ADEILVM 1145 (1192)
Q Consensus 1088 ALLrdP~ILLLDEA------TSALD~eTE~~Iq~aL~~l~~---grTvIvIAHRLST--------I~~-----aDrIlVL 1145 (1192)
+...+|+++++||| |++||+.+.+.+.+.+++..+ +-++++++|.++. +.. ...|+|+
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl 221 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL 221 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence 55668999999999 999999999999999998643 3567788999752 222 3568999
Q ss_pred eCCEEEEEcCHHHHH
Q psy13234 1146 HAGEIVERGRHEELL 1160 (1192)
Q Consensus 1146 e~G~IvE~GtheELL 1160 (1192)
.++..++.|+.+++.
T Consensus 222 TK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 222 TKPDLVDKGTEDKVV 236 (608)
T ss_dssp ECGGGSSSSSTTCCC
T ss_pred cchhhcCcccHHHHH
Confidence 999988888876544
No 110
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.58 E-value=2.1e-18 Score=182.08 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=88.4
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhc-cccCCC
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQY-ARINAS 1006 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~-G~~~as 1006 (1192)
+.|+.++|+||||||||||+++|.|+++|+ | ..+++|+||.+.++.+.++|+.. .+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~- 79 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA- 79 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS-
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC-
Confidence 345569999999999999999999999986 5 36899999999999888877641 11000
Q ss_pred HHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCC--CCcccccCCCCCCChHHHHHHH
Q psy13234 1007 EEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPD--GYDTQVGERGLKLSGGEKQRVA 1084 (1192)
Q Consensus 1007 dEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~--GyDT~VGErG~~LSGGQKQRIA 1084 (1192)
|.. + +...+.+.+..++. .+++++.++|.++||||+||++
T Consensus 80 --------------------~~~---------~---------~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~ 121 (208)
T 3c8u_A 80 --------------------PET---------F---------DFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVG 121 (208)
T ss_dssp --------------------GGG---------B---------CHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEEC
T ss_pred --------------------Cch---------h---------hHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEc
Confidence 000 1 11222333444444 4889999999999999999999
Q ss_pred HH-HHhcCCCCEEEEeCCC
Q psy13234 1085 IA-RTLLKAPQIVLLDEAT 1102 (1192)
Q Consensus 1085 LA-RALLrdP~ILLLDEAT 1102 (1192)
+| |+++.++.++++|||.
T Consensus 122 ~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 122 PECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TTCCEEEEEESSTTBCSTT
T ss_pred CCCcEEEECCceeccCCch
Confidence 99 9999999999999984
No 111
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.57 E-value=2.6e-16 Score=167.87 Aligned_cols=161 Identities=12% Similarity=0.020 Sum_probs=96.5
Q ss_pred eecCCcccceEEEEcCCCCcHHHHHHHHh--cCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcccc-ccHHHHHh
Q psy13234 923 IALESQLVWYLLQVGQSGAGKSTIIRLLF--RFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN-NSIKFNIQ 999 (1192)
Q Consensus 923 ~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLl--Rlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFn-GTIreNI~ 999 (1192)
-+++|+. ++|+||||||||||++.|+ ++.++.+|.+.+++.+... .....++++++++|+...+. -++.++..
T Consensus 26 gi~~G~~---~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (251)
T 2ehv_A 26 GFPEGTT---VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASFGWDFEKYEKEGKIAIVDGVS 101 (251)
T ss_dssp SEETTCE---EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTTTCCHHHHHHTTSEEEEC---
T ss_pred CCCCCcE---EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHcCCChHHHhhcCCEEEEEccc
Confidence 4556666 9999999999999999999 7757778888888754321 12233355677766543221 11212211
Q ss_pred ccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHH
Q psy13234 1000 YARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGE 1079 (1192)
Q Consensus 1000 ~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQ 1079 (1192)
..... ..... ..... ..+-++
T Consensus 102 ~~~~~--------------------------------------------~~~~~-----------~~~~~----~~~~~~ 122 (251)
T 2ehv_A 102 SVVGL--------------------------------------------PSEEK-----------FVLED----RFNVDN 122 (251)
T ss_dssp ---------------------------------------------------------------------------CCHHH
T ss_pred ccccc--------------------------------------------ccccc-----------eeccC----cccHHH
Confidence 00000 00000 00000 122344
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHc-CCceEEEEecChhHH----------Hhc-CEE
Q psy13234 1080 KQRVAIARTLLKAPQIVLLDEATSALD-----TKTERNIQSALNRVC-ASRTTIIVAHRLSTI----------IHA-DEI 1142 (1192)
Q Consensus 1080 KQRIALARALLrdP~ILLLDEATSALD-----~eTE~~Iq~aL~~l~-~grTvIvIAHRLSTI----------~~a-DrI 1142 (1192)
.+.-..+..-..+|++++|||||+.+| ....+.+.+.++.+. .|+|+|++||.++.. ..| |+|
T Consensus 123 ~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~v 202 (251)
T 2ehv_A 123 FLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGV 202 (251)
T ss_dssp HHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEE
T ss_pred HHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEE
Confidence 444333333347999999999999998 666666777776653 479999999999886 457 999
Q ss_pred EEEe
Q psy13234 1143 LVMH 1146 (1192)
Q Consensus 1143 lVLe 1146 (1192)
++|+
T Consensus 203 i~l~ 206 (251)
T 2ehv_A 203 IVLD 206 (251)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9996
No 112
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.57 E-value=3.6e-16 Score=194.79 Aligned_cols=131 Identities=20% Similarity=0.202 Sum_probs=101.5
Q ss_pred CCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEECCeecCCCChHhhcccEEEEcCCCcc
Q psy13234 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD-VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 989 (1192)
Q Consensus 911 ~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd-p~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~L 989 (1192)
+.++++++ +. |+ .++|+|||||||||++|++.|+.. ++.|++. + .-+.++++++| +
T Consensus 566 ~~vl~dis---l~---g~---i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a~~~~i~~v~~---i 622 (765)
T 1ewq_A 566 EFVPNDLE---MA---HE---LVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--AEEAHLPLFDG---I 622 (765)
T ss_dssp CCCCEEEE---ES---SC---EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--SSEEEECCCSE---E
T ss_pred ceEeeecc---CC---Cc---EEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--hhccceeeHHH---h
Confidence 45677776 55 44 499999999999999999999874 7888752 1 12567888887 4
Q ss_pred ccc-cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccc
Q psy13234 990 FNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQV 1068 (1192)
Q Consensus 990 FnG-TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~V 1068 (1192)
|.. |+.||+..
T Consensus 623 ~~~~~~~d~l~~-------------------------------------------------------------------- 634 (765)
T 1ewq_A 623 YTRIGASDDLAG-------------------------------------------------------------------- 634 (765)
T ss_dssp EEECCC--------------------------------------------------------------------------
T ss_pred hccCCHHHHHHh--------------------------------------------------------------------
Confidence 443 55555421
Q ss_pred cCCCCCCChHHHHHHHHHHHh--cCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHcCCceEEEEecChhHHHhc
Q psy13234 1069 GERGLKLSGGEKQRVAIARTL--LKAPQIVLLDEA---TSALDTKTE-RNIQSALNRVCASRTTIIVAHRLSTIIHA 1139 (1192)
Q Consensus 1069 GErG~~LSGGQKQRIALARAL--LrdP~ILLLDEA---TSALD~eTE-~~Iq~aL~~l~~grTvIvIAHRLSTI~~a 1139 (1192)
.+|+|++|++.+|+++ ..+|+++||||| ||++|..+. ..+.+.|.+ .++|+|++||+.+....+
T Consensus 635 -----g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 635 -----GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp -----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred -----cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 2589999999999999 999999999999 999999886 578888877 589999999998876544
No 113
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.57 E-value=1.4e-17 Score=187.71 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=111.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC--------CCCCceEEECCeecCCCC---------------hHhhcccEEEE---cC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY--------DVESGDIFIDNQNIKTVS---------------QASLRQAIGVV---PQ 985 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly--------dp~sGsI~IDG~DI~~i~---------------~~sLR~~Ig~V---PQ 985 (1192)
.++|+|+||||||||++.|.|.+ .|+.|+|.|||.++...+ ..++++.++++ +|
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q 85 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLD 85 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHh
Confidence 49999999999999999999998 889999999999998764 45778889988 78
Q ss_pred CCc-cccccHHHHHhccccCCCHHHHHHHh-hhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCC
Q psy13234 986 DTV-LFNNSIKFNIQYARINASEEEVKEAA-TSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDG 1063 (1192)
Q Consensus 986 Dp~-LFnGTIreNI~~G~~~asdEeV~eAa-~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~G 1063 (1192)
++. .|+.|+.||..+++| +.+.+.. ....... ..++..++..+++.++...++
T Consensus 86 ~~~~~~~~~v~E~~~l~~p----~~~~~~~~~~~~~~~-------------------~~~l~~~l~~vd~~~~~~~~~-- 140 (318)
T 1nij_A 86 KGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQ-------------------RYLLDGVIALVDAVHADEQMN-- 140 (318)
T ss_dssp HTSCCCSEEEEEEETTCCH----HHHHHHHHHSHHHHH-------------------HEEEEEEEEEEETTTHHHHHH--
T ss_pred cCCCCCCEEEEeCCCCCCH----HHHHHHHhcCccccC-------------------eEEECCEEEEEEHHHHHHHHh--
Confidence 876 478999999988754 2232221 0000000 000001112222222222211
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecCh
Q psy13234 1064 YDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 1133 (1192)
Q Consensus 1064 yDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRL 1133 (1192)
++|||||||.+.+|+++.+|+++ ||| +.+.+.+++..++.|+++++|+.
T Consensus 141 ----------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 141 ----------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp ----------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred ----------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 48999999999999999999987 888 67888888887889999999974
No 114
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.56 E-value=1.1e-15 Score=193.80 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHc--CCceEEEEecChhHHHhcCEEEEEeCC
Q psy13234 1074 KLSGGEKQRVAIARTL--LKAPQIVLLDEATSALDTKTERNI-QSALNRVC--ASRTTIIVAHRLSTIIHADEILVMHAG 1148 (1192)
Q Consensus 1074 ~LSGGQKQRIALARAL--LrdP~ILLLDEATSALD~eTE~~I-q~aL~~l~--~grTvIvIAHRLSTI~~aDrIlVLe~G 1148 (1192)
++|+|++|+..+|+++ ..+|+++||||||+++|+.....+ .+.++.+. .++|+|++||..+....||++..+++|
T Consensus 721 ~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng 800 (934)
T 3thx_A 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNL 800 (934)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEE
T ss_pred hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEee
Confidence 4788888888888888 899999999999999999988888 44455544 379999999999988999999999999
Q ss_pred EEEEEcCHHHH
Q psy13234 1149 EIVERGRHEEL 1159 (1192)
Q Consensus 1149 ~IvE~GtheEL 1159 (1192)
++...|+.+++
T Consensus 801 ~v~~~~~~~~l 811 (934)
T 3thx_A 801 HVTALTTEETL 811 (934)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEecCCcE
Confidence 99988776665
No 115
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.54 E-value=1.3e-15 Score=174.80 Aligned_cols=148 Identities=22% Similarity=0.238 Sum_probs=99.3
Q ss_pred ccceeeecC-CCCccccccc----cceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCeecCCCChH
Q psy13234 901 EEDQFGFRK-GKGTRDAIGC----LRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE-SGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 901 enVsFsY~~-~~~vL~~ISv----L~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~-sGsI~IDG~DI~~i~~~ 974 (1192)
+.+.++|.+ ..+.++++.. .++...+|+. ++|+|||||||||++++|+|+++|+ +|.|...+.++ ++.
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~---i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~-- 165 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGL---VLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV-- 165 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEE---EEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC--
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCE---EEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh--
Confidence 345566643 3445555540 0113445555 9999999999999999999999997 56665443332 222
Q ss_pred hhcccEEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChH
Q psy13234 975 SLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054 (1192)
Q Consensus 975 sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lh 1054 (1192)
.+...++++|.+.-
T Consensus 166 -~~~~~~~v~q~~~~----------------------------------------------------------------- 179 (356)
T 3jvv_A 166 -HESKKCLVNQREVH----------------------------------------------------------------- 179 (356)
T ss_dssp -CCCSSSEEEEEEBT-----------------------------------------------------------------
T ss_pred -hhccccceeeeeec-----------------------------------------------------------------
Confidence 23334455554321
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChh
Q psy13234 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134 (1192)
Q Consensus 1055 d~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLS 1134 (1192)
... ++-.+ +|||||..+|+++++|||| |.++.+.+.++ ...|+|+++++|..+
T Consensus 180 ---------------~~~--~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 180 ---------------RDT--LGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTS 232 (356)
T ss_dssp ---------------TTB--SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSS
T ss_pred ---------------ccc--CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccCh
Confidence 000 11111 9999999999999999999 78776655544 345899999999999
Q ss_pred HHHhcCEEEEEeC
Q psy13234 1135 TIIHADEILVMHA 1147 (1192)
Q Consensus 1135 TI~~aDrIlVLe~ 1147 (1192)
.+..+||+++|..
T Consensus 233 ~~~~~dRli~l~~ 245 (356)
T 3jvv_A 233 AAKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHhhhcC
Confidence 9999999987743
No 116
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.53 E-value=2.6e-16 Score=163.68 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=47.9
Q ss_pred cCCCCCCChHHHHH-HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q psy13234 1069 GERGLKLSGGEKQR-VAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122 (1192)
Q Consensus 1069 GErG~~LSGGQKQR-IALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~ 1122 (1192)
+..--.+|+||||| +..||+++++|+++++||||||+|.++-..+.+.|.+..+
T Consensus 144 ~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 144 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred EecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 55555789999999 8999999999999999999999999999999999987643
No 117
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=8.1e-16 Score=179.90 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=99.2
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~ 973 (1192)
+.+. +++++++|.. +.++++++ +. ++|||+||||||||++.|+|...|..| .+|.++... .
T Consensus 10 ~~l~--~~~l~~~y~~-~~vl~~vs---f~---------I~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~ 70 (418)
T 2qag_C 10 GYVG--FANLPNQVYR-KSVKRGFE---FT---------LMVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-K 70 (418)
T ss_dssp -------CCCCCCTTT-TTCC-CCC---EE---------EEEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------
T ss_pred CcEE--EEecceeECC-EEEecCCC---EE---------EEEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-c
Confidence 3455 8899999854 56888888 65 699999999999999999999887666 244443321 1
Q ss_pred HhhcccEEEEcCCCccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcC
Q psy13234 974 ASLRQAIGVVPQDTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052 (1192)
Q Consensus 974 ~sLR~~Ig~VPQDp~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~ 1052 (1192)
..-++.+++++|++.++ +-||.||+.+++.. +.++..+.
T Consensus 71 t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~--------------------------------------- 110 (418)
T 2qag_C 71 TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP--------------------------------------- 110 (418)
T ss_dssp CCEEEEEECC------CEEEEEEECC------------CHH---------------------------------------
T ss_pred ceeeeeEEEEEecCCcccceeeeechhhhhhc-cchhhHHH---------------------------------------
Confidence 12246799999988876 57999999877421 11110000
Q ss_pred hHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHcCCceEEE
Q psy13234 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQ---IVLLDEAT-SALDTKTERNIQSALNRVCASRTTII 1128 (1192)
Q Consensus 1053 Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~---ILLLDEAT-SALD~eTE~~Iq~aL~~l~~grTvIv 1128 (1192)
+.+.+.. .++.+.+||++||||++++|+ +|++|||| ++||+... .+. +++..+.++|+
T Consensus 111 i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~l---k~L~~~v~iIl 172 (418)
T 2qag_C 111 VIDYIDS--------------KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFM---KRLHEKVNIIP 172 (418)
T ss_dssp HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHH---HHHTTTSEEEE
T ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHH---HHHhccCcEEE
Confidence 1122211 344566789999999999999 99999999 59998763 333 33445788999
Q ss_pred EecChhHH
Q psy13234 1129 VAHRLSTI 1136 (1192)
Q Consensus 1129 IAHRLSTI 1136 (1192)
|.|+..++
T Consensus 173 VinK~Dll 180 (418)
T 2qag_C 173 LIAKADTL 180 (418)
T ss_dssp EEESTTSS
T ss_pred EEEcccCc
Confidence 99987654
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.51 E-value=3.4e-16 Score=161.19 Aligned_cols=161 Identities=16% Similarity=0.063 Sum_probs=97.9
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHH
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEE 1008 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdE 1008 (1192)
+|+.++|+|||||||||++++|.+. |..|.|.+||.++..... -++.++|++|++. .+.|+.+|+.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~------ 76 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA------ 76 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH------
Confidence 3445999999999999999999998 778999999988644321 2455788999776 5678899986431
Q ss_pred HHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q psy13234 1009 EVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIART 1088 (1192)
Q Consensus 1009 eV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARA 1088 (1192)
+..... +- ..+. |.. ++..++.++- .+ +.....+|+||+||+++||+
T Consensus 77 ~~~~~~---~~-~~~~---~~~-----------------~~~~~l~~~~-~~--------~~~~~~ls~~~~~~v~~~R~ 123 (191)
T 1zp6_A 77 GRYAKE---GY-FVIL---DGV-----------------VRPDWLPAFT-AL--------ARPLHYIVLRTTAAEAIERC 123 (191)
T ss_dssp HHHHHT---SC-EEEE---CSC-----------------CCTTTTHHHH-TT--------CSCEEEEEEECCHHHHHHHH
T ss_pred HHHhcc---CC-eEEE---ecc-----------------CcHHHHHHHH-hc--------CCCeEEEEecCCHHHHHHHH
Confidence 000000 00 0000 000 0111111110 00 22335799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCE
Q psy13234 1089 LLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADE 1141 (1192)
Q Consensus 1089 LLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDr 1141 (1192)
+.++|+++ +|++..+.+.+.+++..+..++++.++..+.-..+|+
T Consensus 124 ~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~ 168 (191)
T 1zp6_A 124 LDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQS 168 (191)
T ss_dssp HTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTT
T ss_pred HhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCCCHHHHHHH
Confidence 99999876 5777666666665543222234444554333333443
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.51 E-value=1.6e-15 Score=162.91 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=104.2
Q ss_pred eecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCeecCCCChHhhcccEEEEcCCCccccccHH-----
Q psy13234 923 IALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV--ESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK----- 995 (1192)
Q Consensus 923 ~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp--~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIr----- 995 (1192)
..++|+. ++|+||||||||||+++|.|+++| .+|+|.+++.+.+. ..++.++|++|++.+|...+.
T Consensus 12 ~~~~G~i---i~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~ 84 (219)
T 1s96_A 12 HMAQGTL---YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFL 84 (219)
T ss_dssp ---CCCE---EEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred cCCCCcE---EEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHH
Confidence 3455555 999999999999999999999986 78999999987653 246789999999988875332
Q ss_pred HHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCC
Q psy13234 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKL 1075 (1192)
Q Consensus 996 eNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~L 1075 (1192)
||+.+.. .-|.|
T Consensus 85 E~~~~~~-----------------------------------------------------------~~yg~--------- 96 (219)
T 1s96_A 85 EHAEVFG-----------------------------------------------------------NYYGT--------- 96 (219)
T ss_dssp EEEEETT-----------------------------------------------------------EEEEE---------
T ss_pred HHHHHHh-----------------------------------------------------------ccCCC---------
Confidence 3332210 00111
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeCCEEEEEcC
Q psy13234 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGR 1155 (1192)
Q Consensus 1076 SGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~G~IvE~Gt 1155 (1192)
.+++ ++.++.+++++||| ||+++.+.+.+.+. +++|+++++|+++.+.. |+ ++.| .|+
T Consensus 97 ---~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~ 154 (219)
T 1s96_A 97 ---SREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDS 154 (219)
T ss_dssp ---EHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSC
T ss_pred ---CHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCC
Confidence 0111 33444557999999 99999999998876 57999999999998876 43 6777 678
Q ss_pred HHHHHhc
Q psy13234 1156 HEELLER 1162 (1192)
Q Consensus 1156 heELL~~ 1162 (1192)
.+++.++
T Consensus 155 ~e~i~~r 161 (219)
T 1s96_A 155 EEVIAKR 161 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888754
No 120
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.50 E-value=2.3e-15 Score=158.15 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHHHhcCCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHc--CCceEEEEecCh--------hHH-Hhc
Q psy13234 1075 LSGGEKQRVAIARTLLKAPQ--IVLLDEATSAL--DTKTERNIQSALNRVC--ASRTTIIVAHRL--------STI-IHA 1139 (1192)
Q Consensus 1075 LSGGQKQRIALARALLrdP~--ILLLDEATSAL--D~eTE~~Iq~aL~~l~--~grTvIvIAHRL--------STI-~~a 1139 (1192)
.|.+|.++...+.+.-.+|+ ++++||||+.+ |++..+.+.+.|++.. .++|+|+++|.. +.+ ..|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 48999998888877777999 99999999888 9888888888887763 478999999998 335 459
Q ss_pred CEEEEEeCCE
Q psy13234 1140 DEILVMHAGE 1149 (1192)
Q Consensus 1140 DrIlVLe~G~ 1149 (1192)
|+|++|++.+
T Consensus 184 d~vi~l~~~~ 193 (235)
T 2w0m_A 184 DGIIRFRRMI 193 (235)
T ss_dssp SEEEEEEEEE
T ss_pred eEEEEEEEEe
Confidence 9999998653
No 121
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=7.8e-16 Score=172.48 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=77.8
Q ss_pred cceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcC-CCCCCceEEECCeecCCCChHhhcccE
Q psy13234 902 EDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRF-YDVESGDIFIDNQNIKTVSQASLRQAI 980 (1192)
Q Consensus 902 nVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl-ydp~sGsI~IDG~DI~~i~~~sLR~~I 980 (1192)
|++..|. ++.++++++ +. ++|+|+||+|||||++.|+|. ..|++| |.++|.++.. +.. ++.+
T Consensus 3 ~l~~~~~-~~~~l~~~~---~~---------I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~~--~~~~ 65 (301)
T 2qnr_A 3 NLPNQVH-RKSVKKGFE---FT---------LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TVQ--IEAS 65 (301)
T ss_dssp ----------------C---EE---------EEEEEETTSSHHHHHHHHHC----------------------------C
T ss_pred CCcceEC-CEEEEcCCC---EE---------EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cce--EeeE
Confidence 4555664 345777877 54 699999999999999999998 889999 9999988754 222 4678
Q ss_pred EEEcCCCccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 981 GVVPQDTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 981 g~VPQDp~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
++++|++-++ +-||.||..++... ..++ .+. ++. +. +.+.
T Consensus 66 ~~~~q~~~~~~~ltv~Dt~g~~~~~-~~~e-------------------~~~-----------~l~---~~--l~~~--- 106 (301)
T 2qnr_A 66 TVEIEERGVKLRLTVVDTPGYGDAI-NCRD-------------------CFK-----------TII---SY--IDEQ--- 106 (301)
T ss_dssp EEEEC---CCEEEEEEEEC-------------------------------CT-----------THH---HH--HHHH---
T ss_pred EEEecCCCcccCcchhhhhhhhhhc-CcHH-------------------HHH-----------HHH---HH--HHHH---
Confidence 9999976654 45888887665321 0000 000 000 00 1111
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHcC--CceEEEEecChhH
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA-LDTKTERNIQSALNRVCA--SRTTIIVAHRLST 1135 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSA-LD~eTE~~Iq~aL~~l~~--grTvIvIAHRLST 1135 (1192)
++..+ .++|||||||+++|||+. ++++||||++ ||+... +.++++.+ +.++|+..|++.+
T Consensus 107 ----~~~~~----~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 107 ----FERYL----HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ----HHHHH----HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ----HHHHH----HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 11111 258999999999999985 9999999985 999873 33444433 4677777898753
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.47 E-value=5.1e-14 Score=147.43 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCC-CCEEEEeCCCCCCCHHHH--------HHHHHHHHHHcC--CceEEEEecChh-------------
Q psy13234 1079 EKQRVAIARTLLKA-PQIVLLDEATSALDTKTE--------RNIQSALNRVCA--SRTTIIVAHRLS------------- 1134 (1192)
Q Consensus 1079 QKQRIALARALLrd-P~ILLLDEATSALD~eTE--------~~Iq~aL~~l~~--grTvIvIAHRLS------------- 1134 (1192)
|+|+++.||+++++ |+++|+||||+.+|...+ ..+.+.|+++.+ ++|+|+++|...
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~ 170 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQ 170 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCH
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCc
Confidence 47899999999986 999999999999997543 334455666543 789999999865
Q ss_pred HH-HhcCEEEEEeCC
Q psy13234 1135 TI-IHADEILVMHAG 1148 (1192)
Q Consensus 1135 TI-~~aDrIlVLe~G 1148 (1192)
.+ ..||.|++|++.
T Consensus 171 ~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 171 TLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHTSSEEEEEEEC
T ss_pred ceeecCcEEEEEEEe
Confidence 33 469999999755
No 123
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.45 E-value=1.4e-13 Score=151.41 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=94.8
Q ss_pred ecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHh-ccc
Q psy13234 924 ALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQ-YAR 1002 (1192)
Q Consensus 924 i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~-~G~ 1002 (1192)
+++|+. ++|+||+|||||||++.+++... .|++ +.|.+..+ +..+.|++.+... ..+..++. ++.
T Consensus 27 l~~G~i---~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~ 92 (279)
T 1nlf_A 27 MVAGTV---GALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA 92 (279)
T ss_dssp EETTSE---EEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT
T ss_pred ccCCCE---EEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh
Confidence 345555 99999999999999999998654 5766 34554321 3467787765432 22322321 111
Q ss_pred cCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHH
Q psy13234 1003 INASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQR 1082 (1192)
Q Consensus 1003 ~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQR 1082 (1192)
+. ++++..++++...+. ...+.....||+||+|+
T Consensus 93 -~~----------------------------------~~~~~~~~~~~l~l~-----------~~~~~~~~~ls~g~~~~ 126 (279)
T 1nlf_A 93 -HL----------------------------------SAEERQAVADGLLIQ-----------PLIGSLPNIMAPEWFDG 126 (279)
T ss_dssp -TS----------------------------------CHHHHHHHHHHEEEC-----------CCTTSCCCTTSHHHHHH
T ss_pred -hc----------------------------------ChhhhhhccCceEEe-----------ecCCCCcccCCHHHHHH
Confidence 11 112222223333322 12234456799999887
Q ss_pred HHHHHHhcCCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHc--CCceEEEEecChhHH
Q psy13234 1083 VAIARTLLKAPQIVLLDEATS--ALDTKTE---RNIQSALNRVC--ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1083 IALARALLrdP~ILLLDEATS--ALD~eTE---~~Iq~aL~~l~--~grTvIvIAHRLSTI 1136 (1192)
+ |+++++|+++|+||||+ ++|.... ..+.+.|+++. .++|+|+|+|.....
T Consensus 127 i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 127 L---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp H---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred H---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 5 68889999999999999 9997544 66777777664 379999999987654
No 124
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.40 E-value=5.8e-14 Score=177.65 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=58.7
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHc--CCceEEEEecChhHHHhcCEE
Q psy13234 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ-SALNRVC--ASRTTIIVAHRLSTIIHADEI 1142 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq-~aL~~l~--~grTvIvIAHRLSTI~~aDrI 1142 (1192)
..+|+|++|+..|+|+ ..+|+++||||||+++|+.....+. +.++.+. .++|+|++||.++....||+.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 4689999999999999 7899999999999999999988887 4555542 479999999999887766643
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.39 E-value=2.1e-13 Score=144.92 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=41.2
Q ss_pred ecCCcccceEEEEcCCCCcHHHHHHHHhc--CCCC-----CCceEEECCeecCC-CChHhhcccEEEEcC
Q psy13234 924 ALESQLVWYLLQVGQSGAGKSTIIRLLFR--FYDV-----ESGDIFIDNQNIKT-VSQASLRQAIGVVPQ 985 (1192)
Q Consensus 924 i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlR--lydp-----~sGsI~IDG~DI~~-i~~~sLR~~Ig~VPQ 985 (1192)
+++|+. ++|+||+|||||||++.+++ ..+| ..|.+++++.+.-. -....+++++++.||
T Consensus 21 i~~G~~---~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 87 (243)
T 1n0w_A 21 IETGSI---TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 87 (243)
T ss_dssp EETTSE---EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred CcCCeE---EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH
Confidence 455555 99999999999999999999 5655 67889999876311 112334445555554
No 126
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.38 E-value=7e-13 Score=152.39 Aligned_cols=74 Identities=31% Similarity=0.396 Sum_probs=68.6
Q ss_pred CCCChHHHHHH------HHHHHhcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEE
Q psy13234 1073 LKLSGGEKQRV------AIARTLLKA-PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 1145 (1192)
Q Consensus 1073 ~~LSGGQKQRI------ALARALLrd-P~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVL 1145 (1192)
..||||||||+ |+|||+..+ |+++|||||||+||+++.+.+.+.|.+..+++|+|+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 47999999988 678999999 99999999999999999999999999876668999999999877789999999
Q ss_pred e
Q psy13234 1146 H 1146 (1192)
Q Consensus 1146 e 1146 (1192)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 127
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=2.8e-13 Score=152.54 Aligned_cols=137 Identities=21% Similarity=0.270 Sum_probs=79.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHHHH
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR-FYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVK 1011 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR-lydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~ 1011 (1192)
+.|+||+|+||||+++++.| ++.|+.|+|.++|.+...... -+..+++++|++++.-..-. .+. .+.+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~ 110 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD----MGN--NDRIVIQ 110 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh----cCC--cchHHHH
Confidence 99999999999999999999 899999999999988765333 37789999998875321100 000 0111111
Q ss_pred HHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHhcC
Q psy13234 1012 EAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK 1091 (1192)
Q Consensus 1012 eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARALLr 1091 (1192)
+. +.++.+..++.+++ .||| +..
T Consensus 111 ~~------------------------------i~~~~~~~~~~~~~----------------~ls~-----------l~~ 133 (354)
T 1sxj_E 111 EL------------------------------LKEVAQMEQVDFQD----------------SKDG-----------LAH 133 (354)
T ss_dssp HH------------------------------HHHHTTTTC---------------------------------------
T ss_pred HH------------------------------HHHHHHhccccccc----------------cccc-----------cCC
Confidence 11 11111222222211 5676 778
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhH
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 1135 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLST 1135 (1192)
+|+++++|||++ ||.++...+.+.+++..+++++|++||+++.
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 999999999999 9999999999999988778999999999764
No 128
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.35 E-value=5.5e-16 Score=160.15 Aligned_cols=170 Identities=14% Similarity=0.068 Sum_probs=105.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccc-cccHHHHHhccccCCCHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKFNIQYARINASEE 1008 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LF-nGTIreNI~~G~~~asdE 1008 (1192)
|+.++|+|||||||||+++.|.+ |.+|++.+||.++... ..+++++|+...+ +.|+++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 45699999999999999999997 6789999999776432 2457788876433 457788875320
Q ss_pred HHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCC--ChHHHHHHHHH
Q psy13234 1009 EVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKL--SGGEKQRVAIA 1086 (1192)
Q Consensus 1009 eV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~L--SGGQKQRIALA 1086 (1192)
.... ..+ .+.+.+.-. ..... +.-.++ |+|++|++.++
T Consensus 67 --~~~~-~~~-~~~ild~~~-----------~~~~~-------------------------~~~~~~~~s~g~~~~~~~i 106 (189)
T 2bdt_A 67 --VNFL-LAQ-NDVVLDYIA-----------FPDEA-------------------------EALAQTVQAKVDDVEIRFI 106 (189)
T ss_dssp --HHHH-HTT-CEEEEESCC-----------CHHHH-------------------------HHHHHHHHHHCSSEEEEEE
T ss_pred --HHHH-hcC-CcEEEeecc-----------CHHHH-------------------------HHHHHHHHhcccCCCeEEE
Confidence 0000 000 000110000 00000 000123 78888888887
Q ss_pred H------HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEEEecC-hhHHH-hcCEEEEEeCCEEEEEcCHH
Q psy13234 1087 R------TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR-LSTII-HADEILVMHAGEIVERGRHE 1157 (1192)
Q Consensus 1087 R------ALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIvIAHR-LSTI~-~aDrIlVLe~G~IvE~Gthe 1157 (1192)
. +++++|+...+|| ++|++..+. .+.+.+..+ +.|+|..+|. ++.+. -||+|+ ++|+++..|+.+
T Consensus 107 ~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~ 180 (189)
T 2bdt_A 107 ILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGD 180 (189)
T ss_dssp EEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC----
T ss_pred EEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCC
Confidence 7 8888888877884 789877777 777776643 4788889999 88875 499998 999999999887
Q ss_pred HHH
Q psy13234 1158 ELL 1160 (1192)
Q Consensus 1158 ELL 1160 (1192)
-|-
T Consensus 181 ~~~ 183 (189)
T 2bdt_A 181 PLE 183 (189)
T ss_dssp ---
T ss_pred chh
Confidence 653
No 129
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.34 E-value=1.6e-13 Score=171.87 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=58.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHc--CCceEEEEecChhHHHhcCEEEEEeCCEE
Q psy13234 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVC--ASRTTIIVAHRLSTIIHADEILVMHAGEI 1150 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~I-q~aL~~l~--~grTvIvIAHRLSTI~~aDrIlVLe~G~I 1150 (1192)
.+|+|++| ++.+.....+|+++||||||+++|+.....+ .+.++.+. .++|+|++||.++....||++..+++|++
T Consensus 669 tf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 669 TFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL 747 (800)
T ss_dssp -CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEE
T ss_pred hhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEE
Confidence 35666665 4444456899999999999888888766655 55555554 37999999999998888998877777776
Q ss_pred EEE
Q psy13234 1151 VER 1153 (1192)
Q Consensus 1151 vE~ 1153 (1192)
...
T Consensus 748 ~~~ 750 (800)
T 1wb9_A 748 DAL 750 (800)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 130
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=4.7e-13 Score=156.63 Aligned_cols=186 Identities=12% Similarity=0.169 Sum_probs=111.0
Q ss_pred cccceeeecCCCCccccccccceeecCCcccce--EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWY--LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~--VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR 977 (1192)
.++ +++|+. .+ +++++ +.+.+ |+. +|||||||||||||+++|+|+. ++|.++...+....+
T Consensus 19 ~~~-~~~y~~-~~-L~~vs---l~i~~---Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~ 81 (427)
T 2qag_B 19 LAG-HVGFDS-LP-DQLVN---KSVSQ---GFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQL 81 (427)
T ss_dssp CCC-CC-CC---C-HHHHH---HSCC----CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEE
T ss_pred Eee-EEEECC-ee-cCCCc---eEecC---CCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceE
Confidence 444 666754 34 77777 66655 555 9999999999999999999983 566666655555567
Q ss_pred ccEEEEcCCCccc-cccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHc-ChHH
Q psy13234 978 QAIGVVPQDTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA-DIHE 1055 (1192)
Q Consensus 978 ~~Ig~VPQDp~LF-nGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A-~Lhd 1055 (1192)
+.+++++|++.++ +-|+.||+.||.. .+.++-++.. .++-++++.+.++.. ++.
T Consensus 82 ~~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i----------------------~~~i~~q~~~~L~e~~~i~- 137 (427)
T 2qag_B 82 QSNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPI----------------------VEFIDAQFEAYLQEELKIR- 137 (427)
T ss_dssp EEEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHH----------------------HHHHHHHHHHHHHHC--CC-
T ss_pred eeEEEEeecCccccccchhhhhhhhhc-cccchhhhHH----------------------HHHHHHHHHHHHHHHHhhh-
Confidence 7899999999887 5699999998853 3322111111 001122222333222 211
Q ss_pred HHhcCCCCCccc----c---cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-Hc-CCceE
Q psy13234 1056 RILSFPDGYDTQ----V---GERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR-VC-ASRTT 1126 (1192)
Q Consensus 1056 ~I~~LP~GyDT~----V---GErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~-l~-~grTv 1126 (1192)
.+++..-|+. | -+.|..|+-.+ +.++|+|-.+++|+++||+|..|.++--..+.+.+++ +. .|.++
T Consensus 138 --r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I 212 (427)
T 2qag_B 138 --RVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQI 212 (427)
T ss_dssp --CCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCC
T ss_pred --hhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcE
Confidence 1122223333 2 34455677766 7999999999999999999999988777777777775 43 45778
Q ss_pred EEEec
Q psy13234 1127 IIVAH 1131 (1192)
Q Consensus 1127 IvIAH 1131 (1192)
+.|+.
T Consensus 213 ~~is~ 217 (427)
T 2qag_B 213 YQFPT 217 (427)
T ss_dssp CCCC-
T ss_pred EecCC
Confidence 87775
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.29 E-value=1.2e-13 Score=157.31 Aligned_cols=187 Identities=18% Similarity=0.172 Sum_probs=119.6
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh----Hh
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----AS 975 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~----~s 975 (1192)
.+++++.|.. ..++++++ +.+.+|+. ++|+|++|||||||++.|.|++.|++|+|.++|.|+..... ..
T Consensus 32 ~~~~~~~~~~-~~~l~~i~---~~~~~g~~---v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~ 104 (337)
T 2qm8_A 32 SRRADHRAAV-RDLIDAVL---PQTGRAIR---VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILG 104 (337)
T ss_dssp CSSHHHHHHH-HHHHHHHG---GGCCCSEE---EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSC
T ss_pred eCCcccccCh-HHHHHhCC---cccCCCeE---EEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHH
Confidence 6677777743 34677787 77777777 99999999999999999999999999999999999865432 34
Q ss_pred hcccEEEEcCCCccccc----------c---HHHHHhc---c--------ccCC--CHHHHHHHhhhhhhhhhhccCCCC
Q psy13234 976 LRQAIGVVPQDTVLFNN----------S---IKFNIQY---A--------RINA--SEEEVKEAATSADIHERILSFPDG 1029 (1192)
Q Consensus 976 LR~~Ig~VPQDp~LFnG----------T---IreNI~~---G--------~~~a--sdEeV~eAa~~a~lh~~i~~~pd~ 1029 (1192)
.|+++++++|++.+|.. | ++|.+.. + .+.. ++..+.+ .+++--++..-..+
T Consensus 105 ~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~---~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 105 DKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVAD---LTDFFLVLMLPGAG 181 (337)
T ss_dssp CGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHT---TSSEEEEEECSCC-
T ss_pred HhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHh---hCCEEEEEEcCCCc
Confidence 67889999999999963 2 3333310 0 0111 1222222 11211111110000
Q ss_pred CchhhhhhcccHHHHHHHHHHcChHHHHhcCCC-----CCcccccCCCCCCChHHHHHHHHHHHhcC------CCCEEEE
Q psy13234 1030 YDTQYARINASEEEVKEAATSADIHERILSFPD-----GYDTQVGERGLKLSGGEKQRVAIARTLLK------APQIVLL 1098 (1192)
Q Consensus 1030 ~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~-----GyDT~VGErG~~LSGGQKQRIALARALLr------dP~ILLL 1098 (1192)
+ +.. .+.+.+...|+ ..|-. ....+|+|++|+++.|++++. +|+++.
T Consensus 182 -~-----------~~~------~i~~~i~~~~~ivvlNK~Dl~---~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~- 239 (337)
T 2qm8_A 182 -D-----------ELQ------GIKKGIFELADMIAVNKADDG---DGERRASAAASEYRAALHILTPPSATWTPPVVT- 239 (337)
T ss_dssp -----------------------CCTTHHHHCSEEEEECCSTT---CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE-
T ss_pred -c-----------cHH------HHHHHHhccccEEEEEchhcc---CchhHHHHHHHHHHHHHHhccccccCCCCCEEE-
Confidence 0 000 00000111121 12210 113479999999999999997 688876
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHc
Q psy13234 1099 DEATSALDTKTERNIQSALNRVC 1121 (1192)
Q Consensus 1099 DEATSALD~eTE~~Iq~aL~~l~ 1121 (1192)
|||+|.+.-..+.+.|.+..
T Consensus 240 ---~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 240 ---ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ---EBTTTTBSHHHHHHHHHHHH
T ss_pred ---EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999987754
No 132
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.27 E-value=1.9e-14 Score=172.40 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=118.8
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcccc-
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN- 991 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFn- 991 (1192)
.+++++ +.+.+|+. ++|+|||||||||++++|+|+++|++|.|.++|.+--..+. +.++++++|+.. ..
T Consensus 249 ~l~~l~---~~v~~g~~---i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~ 318 (511)
T 2oap_1 249 VLAYLW---LAIEHKFS---AIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEG 318 (511)
T ss_dssp HHHHHH---HHHHTTCC---EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSC
T ss_pred HHHHHH---HHHhCCCE---EEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccC
Confidence 344555 67777777 99999999999999999999999999999999976323221 456888888776 43
Q ss_pred -ccHHHHHhcc---cc------CCCHHHHHHHhhhhh-hhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcC
Q psy13234 992 -NSIKFNIQYA---RI------NASEEEVKEAATSAD-IHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSF 1060 (1192)
Q Consensus 992 -GTIreNI~~G---~~------~asdEeV~eAa~~a~-lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~L 1060 (1192)
-|.+++++.. +| +.+++|...+.+.++ =|..+.+... +...+++++ +...
T Consensus 319 ~~~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha-------------~~~~~~l~R------l~~~ 379 (511)
T 2oap_1 319 EIDMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHA-------------GDINQMVYR------LESE 379 (511)
T ss_dssp CBCHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEEC-------------SSHHHHHHH------HHST
T ss_pred CcCHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccccc-------------CCHHHHHHH------HHhc
Confidence 3788887532 33 356666655553333 1221111000 011112221 1122
Q ss_pred CCCCccccc-------CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CceEEE--Ee
Q psy13234 1061 PDGYDTQVG-------ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTII--VA 1130 (1192)
Q Consensus 1061 P~GyDT~VG-------ErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grTvIv--IA 1130 (1192)
|.|....+. .....+|||||||.++|. + | |++||+++.+.+.+.+.++.+ ++|+++ +|
T Consensus 380 ~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~s 447 (511)
T 2oap_1 380 PLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMP 447 (511)
T ss_dssp TTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCC
T ss_pred ccccHHHHHhhccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccH
Confidence 333332221 223468999999988762 1 7 999999888777766766544 688875 89
Q ss_pred cChhHHHh-cC
Q psy13234 1131 HRLSTIIH-AD 1140 (1192)
Q Consensus 1131 HRLSTI~~-aD 1140 (1192)
|+++.+.. |+
T Consensus 448 H~l~ei~~~~g 458 (511)
T 2oap_1 448 KKLEKMADFLG 458 (511)
T ss_dssp THHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 99998753 44
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.27 E-value=3.1e-12 Score=145.38 Aligned_cols=166 Identities=17% Similarity=0.145 Sum_probs=106.8
Q ss_pred CCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH----hhcc--cEEEEcCCCcccc-ccHHHHH
Q psy13234 926 ESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA----SLRQ--AIGVVPQDTVLFN-NSIKFNI 998 (1192)
Q Consensus 926 ~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~----sLR~--~Ig~VPQDp~LFn-GTIreNI 998 (1192)
+.++|+.+++||||||||||+++.|.|++.|++|+|.++|.|+...... .+++ .+.+++|+..+++ .|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3345666999999999999999999999999999999999999876632 2333 3559999988876 5889999
Q ss_pred hccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChH
Q psy13234 999 QYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGG 1078 (1192)
Q Consensus 999 ~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGG 1078 (1192)
.++... +. +.+ + .||. |-.. .-..=
T Consensus 205 ~~~~~~-------------~~-d~v---------------------------------l------iDta-G~~~-~~~~l 229 (328)
T 3e70_C 205 QHAKAR-------------GI-DVV---------------------------------L------IDTA-GRSE-TNRNL 229 (328)
T ss_dssp HHHHHH-------------TC-SEE---------------------------------E------EEEC-CSCC-TTTCH
T ss_pred HHHHhc-------------cc-hhh---------------------------------H------Hhhc-cchh-HHHHH
Confidence 764210 00 000 0 1111 1000 00001
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhH---------H-HhcCEEEEEeCC
Q psy13234 1079 EKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST---------I-IHADEILVMHAG 1148 (1192)
Q Consensus 1079 QKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLST---------I-~~aDrIlVLe~G 1148 (1192)
-++.-.++|++..++++++||.+|. .|.. .+.+.+.+ ..+.|.|++||--.+ + ...-.|..+..|
T Consensus 230 ~~eL~~i~ral~~de~llvLDa~t~-~~~~---~~~~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~G 304 (328)
T 3e70_C 230 MDEMKKIARVTKPNLVIFVGDALAG-NAIV---EQARQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVG 304 (328)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEGGGT-THHH---HHHHHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECS
T ss_pred HHHHHHHHHHhcCCCCEEEEecHHH-HHHH---HHHHHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCC
Confidence 1334459999999999999996665 2221 11222322 247899999994432 1 123468888888
Q ss_pred EEE
Q psy13234 1149 EIV 1151 (1192)
Q Consensus 1149 ~Iv 1151 (1192)
+-+
T Consensus 305 e~v 307 (328)
T 3e70_C 305 QGY 307 (328)
T ss_dssp SST
T ss_pred CCc
Confidence 754
No 134
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.25 E-value=5.6e-12 Score=149.65 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=66.1
Q ss_pred ccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC----hHh--hcccEEEEcCCCc
Q psy13234 915 DAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS----QAS--LRQAIGVVPQDTV 988 (1192)
Q Consensus 915 ~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~----~~s--LR~~Ig~VPQDp~ 988 (1192)
++++ +.+.+|+. ++|||+|||||||+++.|.|++.|++|+|.++|.|+.... +.. .|+.|+|++|++.
T Consensus 284 ~~Is---l~i~~GeV---I~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 284 EPLN---VEGKAPFV---ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG 357 (503)
T ss_dssp CCCC---CCSCTTEE---EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT
T ss_pred CCce---eeccCCeE---EEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC
Confidence 4555 66666666 9999999999999999999999999999999988875431 112 4778999999987
Q ss_pred cc-cccHHHHHhcc
Q psy13234 989 LF-NNSIKFNIQYA 1001 (1192)
Q Consensus 989 LF-nGTIreNI~~G 1001 (1192)
++ ..|+++||.++
T Consensus 358 ~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 358 ADSASVIFDAIQAA 371 (503)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55 56899999875
No 135
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.23 E-value=8.2e-12 Score=143.34 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=71.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEC-CeecCCCChHhhcccEEEEcCCCccccc-cHHHHHhccccCCC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYD-VESGDIFID-NQNIKTVSQASLRQAIGVVPQDTVLFNN-SIKFNIQYARINAS 1006 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlyd-p~sGsI~ID-G~DI~~i~~~sLR~~Ig~VPQDp~LFnG-TIreNI~~G~~~as 1006 (1192)
|+.++|+||||||||||+++|.|... |.+|+|.++ |.+.. ...++.++++||++.+++. |++++ +-.+.+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~e~---~l~~l~ 287 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVREF---GLWHLE 287 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTC---CCCCCC
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHHHh---hhcCCC
Confidence 44499999999999999999999999 999999997 77653 2456789999999998875 78875 222344
Q ss_pred HHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q psy13234 1007 EEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIA 1086 (1192)
Q Consensus 1007 dEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALA 1086 (1192)
++++.+.+ .++++.+++.+ --+..-.+|| ||+||+|||
T Consensus 288 ~~e~~~~~------------------------------~e~l~~~gl~~-----------f~~~~~~~lS-G~~~r~ala 325 (358)
T 2rcn_A 288 PEQITQGF------------------------------VEFHDYLGHCK-----------YRDCKHDADP-GCAIREAVE 325 (358)
T ss_dssp HHHHHHTS------------------------------GGGGGGTTCSS-----------STTCCSSSCT-TCHHHHHHH
T ss_pred HHHHHHHH------------------------------HHHHHHcCCch-----------hcCCCcccCC-HHHHHHHHH
Confidence 45443322 01113333222 1233445799 999999999
Q ss_pred HHhc
Q psy13234 1087 RTLL 1090 (1192)
Q Consensus 1087 RALL 1090 (1192)
++++
T Consensus 326 ~gli 329 (358)
T 2rcn_A 326 NGAI 329 (358)
T ss_dssp HTSS
T ss_pred hcCC
Confidence 9864
No 136
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.23 E-value=9.9e-14 Score=149.76 Aligned_cols=178 Identities=14% Similarity=0.206 Sum_probs=103.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHh---cCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcccc-ccHHHHHhccccCC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLF---RFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN-NSIKFNIQYARINA 1005 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLl---Rlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFn-GTIreNI~~G~~~a 1005 (1192)
++.++|+||+||||||++++|. |+..|+.|+|..+|.+.. ..++..+..++|++.+++ .|+.+|+...-..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~- 101 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN- 101 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-
Confidence 3559999999999999999999 999999999999887642 234555666778776655 4888888531000
Q ss_pred CHHHHHHHhhhhhhhhhhc-cCCCCCchhhhhhcccHHHHHHHHHHcChHHHHh--cCCC-C-CcccccCCCCCCChHHH
Q psy13234 1006 SEEEVKEAATSADIHERIL-SFPDGYDTQYARINASEEEVKEAATSADIHERIL--SFPD-G-YDTQVGERGLKLSGGEK 1080 (1192)
Q Consensus 1006 sdEeV~eAa~~a~lh~~i~-~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~--~LP~-G-yDT~VGErG~~LSGGQK 1080 (1192)
.. + ...+. .+|. +.++.....+..... .+. ..|. - ++-....+...|||
T Consensus 102 -------~~---~-~~~il~g~~~-----------~~~~~~~l~~~~~~~-~vi~L~~~~~~~l~r~~~r~~~~lSg--- 155 (246)
T 2bbw_A 102 -------RR---G-QHWLLDGFPR-----------TLGQAEALDKICEVD-LVISLNIPFETLKDRLSRRWIHPPSG--- 155 (246)
T ss_dssp -------CT---T-SCEEEESCCC-----------SHHHHHHHHTTCCCC-EEEEEECCHHHHHHHHHTEEEETTTT---
T ss_pred -------cC---C-CeEEEECCCC-----------CHHHHHHHHhhcCCC-EEEEEECCHHHHHHHHHcCCCcCCCC---
Confidence 00 0 00000 0111 011111110000000 000 0000 0 00001222346888
Q ss_pred HHHHHHHHh-cCCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEeC
Q psy13234 1081 QRVAIARTL-LKAPQIVLLD----EATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 1147 (1192)
Q Consensus 1081 QRIALARAL-LrdP~ILLLD----EATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe~ 1147 (1192)
|+ ||+ +.+|++++|| |||+++|.++++.+.+.+++..+....+ .....+.+++++++.
T Consensus 156 -rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v-----~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 156 -RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPV-----IELYKSRGVLHQFSG 218 (246)
T ss_dssp -EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHH-----HHHHHHTTCEEEEEC
T ss_pred -Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHH-----HHHHhhcCcEEEECC
Confidence 66 888 9999999999 9999999999999999988764321000 112233566777764
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.15 E-value=1.8e-11 Score=142.46 Aligned_cols=146 Identities=16% Similarity=0.274 Sum_probs=90.9
Q ss_pred ecCCcccceEEEEcCCCCcHHHHHHH--HhcCCCCCCc-----eEEECCeec-CCCChHhhcccEEEEcCCCccccccHH
Q psy13234 924 ALESQLVWYLLQVGQSGAGKSTIIRL--LFRFYDVESG-----DIFIDNQNI-KTVSQASLRQAIGVVPQDTVLFNNSIK 995 (1192)
Q Consensus 924 i~~Ge~Ge~VAIVG~SGSGKSTLlrL--LlRlydp~sG-----sI~IDG~DI-~~i~~~sLR~~Ig~VPQDp~LFnGTIr 995 (1192)
+++|+. ++|+||||||||||++. +.+..+++.| .|++|+.+. +......+++++++.|| ++.
T Consensus 175 I~~Gei---~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vl 244 (400)
T 3lda_A 175 VETGSI---TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DAL 244 (400)
T ss_dssp EETTSE---EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHH
T ss_pred cCCCcE---EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHh
Confidence 445555 99999999999999994 4566666444 899999763 22223334455665554 566
Q ss_pred HHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCC
Q psy13234 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKL 1075 (1192)
Q Consensus 996 eNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~L 1075 (1192)
+|+.+.++. +.+
T Consensus 245 eni~~~~~~-~~~------------------------------------------------------------------- 256 (400)
T 3lda_A 245 NNVAYARAY-NAD------------------------------------------------------------------- 256 (400)
T ss_dssp HTEEEEECC-SHH-------------------------------------------------------------------
T ss_pred hcEEEeccC-ChH-------------------------------------------------------------------
Confidence 676654321 111
Q ss_pred ChHHHHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHc--CCceEEEEecChh-----
Q psy13234 1076 SGGEKQRVAIARTLL--KAPQIVLLDEATSALDTKTE------------RNIQSALNRVC--ASRTTIIVAHRLS----- 1134 (1192)
Q Consensus 1076 SGGQKQRIALARALL--rdP~ILLLDEATSALD~eTE------------~~Iq~aL~~l~--~grTvIvIAHRLS----- 1134 (1192)
.|.+++.-+++++ .+|+++++||+|+.+|.+.. ..+.+.|+++. .+.|+|+|+|-.+
T Consensus 257 --~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~ 334 (400)
T 3lda_A 257 --HQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGG 334 (400)
T ss_dssp --HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-------
T ss_pred --HHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcc
Confidence 1122222222222 47999999999999997654 45566666654 3799999999832
Q ss_pred --------------HHH-hcCEEEEEeCCE
Q psy13234 1135 --------------TII-HADEILVMHAGE 1149 (1192)
Q Consensus 1135 --------------TI~-~aDrIlVLe~G~ 1149 (1192)
.+. .+|.+++|++|+
T Consensus 335 ~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 335 MAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -------------CHHHHHCSEEEEEEECS
T ss_pred ccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 233 379999998763
No 138
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.14 E-value=3.9e-13 Score=142.04 Aligned_cols=126 Identities=20% Similarity=0.255 Sum_probs=97.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC---CCCCceEEE--------CCeecCC-CChHhhcccEEEEcCCC------cccccc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY---DVESGDIFI--------DNQNIKT-VSQASLRQAIGVVPQDT------VLFNNS 993 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly---dp~sGsI~I--------DG~DI~~-i~~~sLR~~Ig~VPQDp------~LFnGT 993 (1192)
.++|+|+|||||||++++|.+.+ .++.|.|.. +|.++.+ ....++++++++++|++ .++..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGED 86 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECCee
Confidence 49999999999999999999877 788899987 7888763 56678999999999986 667778
Q ss_pred HHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccc-cCCC
Q psy13234 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQV-GERG 1072 (1192)
Q Consensus 994 IreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~V-GErG 1072 (1192)
+.+|++ ++++.+++ ..+..|+.+.....+.++.+ .++|
T Consensus 87 v~~~~~-------~~~~~~~~----------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~ 125 (227)
T 1cke_A 87 VSGEIR-------TQEVANAA----------------------------------SQVAAFPRVREALLRRQRAFRELPG 125 (227)
T ss_dssp CHHHHT-------SHHHHHHH----------------------------------HHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred CchhhC-------CHHHHHHH----------------------------------HHhcCCHHHHHHHHHHHHHHHhCCC
Confidence 888763 35555555 55666666665555555544 3567
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCC
Q psy13234 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLrdP~ILLLDEATS 1103 (1192)
.-++|+ .++++++++++++|+++++.
T Consensus 126 ~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 126 LIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred EEEECC-----CccceEecCCCEEEEEeCCH
Confidence 788887 56778899999999998864
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.13 E-value=1.3e-12 Score=152.92 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=37.9
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 969 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~ 969 (1192)
++|+.++|+|||||||||++++|+|+++|++|+|.++|.++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 345559999999999999999999999999999999998874
No 140
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.04 E-value=2.6e-11 Score=135.98 Aligned_cols=126 Identities=18% Similarity=0.148 Sum_probs=79.5
Q ss_pred eecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE---CCeecCCCChHhhc-ccEEEEcCCCccc------cc
Q psy13234 923 IALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFI---DNQNIKTVSQASLR-QAIGVVPQDTVLF------NN 992 (1192)
Q Consensus 923 ~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~I---DG~DI~~i~~~sLR-~~Ig~VPQDp~LF------nG 992 (1192)
...+|+. ++++||||||||||+++|. +.+|++|+|.+ +|+++..... ..+ +.+|+|+|+|-+. +-
T Consensus 161 ~~l~G~i---~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 161 DYLEGFI---CILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HHTTTCE---EEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTS
T ss_pred hhccCcE---EEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccC
Confidence 3445555 9999999999999999999 99999999999 9998876542 223 3799999999653 45
Q ss_pred cHHHHH--hccccCCCHHHHHHHhhhhh-hhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHH-HHhcCCCCCcccc
Q psy13234 993 SIKFNI--QYARINASEEEVKEAATSAD-IHERILSFPDGYDTQYARINASEEEVKEAATSADIHE-RILSFPDGYDTQV 1068 (1192)
Q Consensus 993 TIreNI--~~G~~~asdEeV~eAa~~a~-lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd-~I~~LP~GyDT~V 1068 (1192)
|+ ||+ .|+. . .+.. |+..+ .|. +.....+.++++..++.+ ...+. .
T Consensus 236 t~-e~l~~~f~~--~--~~~~--c~~~~~~~~----------------~e~~~~v~~~l~~~~L~~~~~~~~-------~ 285 (302)
T 2yv5_A 236 KP-REVRNYFRE--F--LRYQ--CKYPDCTHT----------------NEPGCAVKEAVKNGEISCERYKSY-------L 285 (302)
T ss_dssp CG-GGGGGGCGG--G--HHHH--HHSTTCCSS----------------SCTTCHHHHHHHTTSSCHHHHHHH-------H
T ss_pred CH-HHHHHHHHH--H--HHcc--CCCCCCCCC----------------CCCCCHHHHHHHcCCCCHHHHHHH-------H
Confidence 77 888 3421 0 0110 21111 010 112356778888888864 33322 1
Q ss_pred cCCCCCCChHHHHHHHHHH
Q psy13234 1069 GERGLKLSGGEKQRVAIAR 1087 (1192)
Q Consensus 1069 GErG~~LSGGQKQRIALAR 1087 (1192)
..|||.+++++.|||
T Consensus 286 ----~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 ----KIIKVYLEEIKELCR 300 (302)
T ss_dssp ----HHTTCCCTTHHHHSS
T ss_pred ----HHHHHHHHHHHHHhc
Confidence 358998889999997
No 141
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.02 E-value=1.5e-11 Score=125.75 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=70.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
-+++++.|.. +.+++++| +.+++|+. ++|+||+|||||||+|+|.|+. |++|+|.++|.++.+. ...+ +
T Consensus 10 ~~~~~~~~g~-~~~l~~vs---l~i~~Ge~---v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~ 78 (158)
T 1htw_A 10 DEFSMLRFGK-KFAEILLK---LHTEKAIM---VYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G 78 (158)
T ss_dssp SHHHHHHHHH-HHHHHHHH---HCCSSCEE---EEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T
T ss_pred CHHHHHHHHH-HHHHhccc---cccCCCCE---EEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C
Confidence 3445555632 34677787 88888888 9999999999999999999999 9999999999988531 1122 2
Q ss_pred EEEEcCCCccccccHHHHHh-cc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQ-YA 1001 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~-~G 1001 (1192)
+++|++.+|.-|+.||+. +|
T Consensus 79 --~~~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 79 --KMIYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp --EEEEEEECTTCSCTTHHHHST
T ss_pred --cceeccccccCCcHHHHHHcC
Confidence 799999999889999995 45
No 142
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.01 E-value=3.3e-10 Score=116.05 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=38.8
Q ss_pred cCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHc-CCceEEEEecChh
Q psy13234 1090 LKAPQIVLLDEATS-ALDTKTERNIQSALNRVC-ASRTTIIVAHRLS 1134 (1192)
Q Consensus 1090 LrdP~ILLLDEATS-ALD~eTE~~Iq~aL~~l~-~grTvIvIAHRLS 1134 (1192)
+.+|++|+||||++ ++|+...+.+.+.+.+.. +++|+|++||+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 44999999999996 899999999988887665 6799999999874
No 143
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.00 E-value=9.8e-13 Score=140.50 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=21.8
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHh-cCC
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLF-RFY 954 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLl-Rly 954 (1192)
...++| +.+.+|+. ++|+|||||||||++++|. |++
T Consensus 16 ~~~~~s---l~v~~G~i---i~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGS---MLKSVGVI---LVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ---------CCEECCCE---EEEECSCC----CHHHHHHC---
T ss_pred ccCCCC---cccCCCCE---EEEECCCCCCHHHHHHHHHhcCC
Confidence 345667 88888888 9999999999999999999 999
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.97 E-value=3.3e-10 Score=114.36 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=32.5
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-Cce-EEEEecC
Q psy13234 1089 LLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRT-TIIVAHR 1132 (1192)
Q Consensus 1089 LLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~-grT-vIvIAHR 1132 (1192)
++.+|++|+||||++ +|...++.+.+.+.+..+ ++| +|++||+
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 467899999999998 555557778888876544 577 7777775
No 145
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.93 E-value=7.4e-11 Score=122.18 Aligned_cols=146 Identities=21% Similarity=0.334 Sum_probs=70.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYD-------------VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlyd-------------p~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIre 996 (1192)
|+.++|+||||||||||+++|.|+++ |.+|++ ||.++...+.+.+++.+ .|+.++++.++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 34599999999999999999999998 888886 89888888877777654 3778888888888
Q ss_pred HHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH-cChHH---HHhc-CCCCCcccccCC
Q psy13234 997 NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS-ADIHE---RILS-FPDGYDTQVGER 1071 (1192)
Q Consensus 997 NI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~-A~Lhd---~I~~-LP~GyDT~VGEr 1071 (1192)
|+ ||.+ .+++.++.+.- .+.++ +.+-+.... ++. .+... +|.. -++-+...+.+|
T Consensus 76 ~~-yg~~---~~~i~~~l~~g--~~~il-------------~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~R 135 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSG--KTCIL-------------DIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGR 135 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTT--CEEEE-------------ECCHHHHHH-HHTCGGGCCEEEEEECSCC----------
T ss_pred ee-ccCc---HHHHHHHHHcC--CeEEE-------------EEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhc
Confidence 86 7754 34444443110 01111 011111111 122 11111 1111 125778888889
Q ss_pred CCCCChHHHHHHHHHHHhc-----CCCCEEEEeC
Q psy13234 1072 GLKLSGGEKQRVAIARTLL-----KAPQIVLLDE 1100 (1192)
Q Consensus 1072 G~~LSGGQKQRIALARALL-----rdP~ILLLDE 1100 (1192)
|..-....+||++-|++-+ +.++.+|..+
T Consensus 136 g~~~~~~i~~rl~~~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 136 GTETEESINKRLSAAQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp -----------------------CCCCSEEEECS
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCcEEEECc
Confidence 9888888899999999866 5567777654
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.91 E-value=2.9e-11 Score=135.64 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=72.3
Q ss_pred ccccccccccceeeecCCCCccccccccceee----------------cCCcccceEEEEcCCCCcHHHHHHHHhcCCC-
Q psy13234 893 ENKIEENMEEDQFGFRKGKGTRDAIGCLRMIA----------------LESQLVWYLLQVGQSGAGKSTIIRLLFRFYD- 955 (1192)
Q Consensus 893 ~g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i----------------~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd- 955 (1192)
.+.++ ++++++.|. +++++++ +.+ .+.+.|+.+||+|+||||||||+++|.|++.
T Consensus 35 ~~~i~--~~~v~~~y~---~~~~~i~---~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 35 NEDLS--LEEVAEIYL---PLSRLLN---FYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp CTTCC--HHHHHHTHH---HHHHHHH---HHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccccc--hHhHHHHHH---HHHHHHH---HHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35566 899999994 5677776 555 1334556699999999999999999999998
Q ss_pred -CCCceEEE---CCeecCCCChHhhcccEEEEcCCCccc-cccHHHHHhc
Q psy13234 956 -VESGDIFI---DNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKFNIQY 1000 (1192)
Q Consensus 956 -p~sGsI~I---DG~DI~~i~~~sLR~~Ig~VPQDp~LF-nGTIreNI~~ 1000 (1192)
|++|+|.+ ||.+.. ...++.++++ |+..++ .-|+.+|+.+
T Consensus 107 ~~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 107 WPEHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp STTCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CCCCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 99999999 998742 2456778888 765553 3478888754
No 147
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.87 E-value=5e-10 Score=125.30 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=43.8
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE---CCeecCCCChHhhcccEEEEcCCCcc
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFI---DNQNIKTVSQASLRQAIGVVPQDTVL 989 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~I---DG~DI~~i~~~sLR~~Ig~VPQDp~L 989 (1192)
+...+|+. ++++||||||||||+++|.|+..|++|+|.+ +|+++.........+.+++|+|+|.+
T Consensus 164 f~~l~gei---v~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 164 KEYLKGKI---STMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHHSSSE---EEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred HHHhcCCe---EEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence 34455655 9999999999999999999999999999999 99998765532222469999999964
No 148
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.87 E-value=8.3e-11 Score=128.10 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=62.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHh---cCCCCCCceEE--------ECCeec-CCCChHhhcccEEEEcC------CCcccc
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLF---RFYDVESGDIF--------IDNQNI-KTVSQASLRQAIGVVPQ------DTVLFN 991 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLl---Rlydp~sGsI~--------IDG~DI-~~i~~~sLR~~Ig~VPQ------Dp~LFn 991 (1192)
|+.++|+|||||||||++++|. |++.|++|.|. .+|.++ .......+++++++++| ...+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILEG 106 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEECC
Confidence 4449999999999999999999 99999999999 999999 45678899999999995 466888
Q ss_pred ccHHHHHh
Q psy13234 992 NSIKFNIQ 999 (1192)
Q Consensus 992 GTIreNI~ 999 (1192)
.++.+||+
T Consensus 107 ~~v~~~i~ 114 (252)
T 4e22_A 107 EDVSNEIR 114 (252)
T ss_dssp EECTTGGG
T ss_pred eehhHHHH
Confidence 89988875
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.84 E-value=1.1e-11 Score=136.98 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=94.9
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCC-ccc
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLF 990 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp-~LF 990 (1192)
.++++++ +..++| ++|+||+|||||||+++|.+...+ |.|.++|.++.+......++.+++++|++ ..+
T Consensus 34 ~~l~~~~---l~~~~G-----vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 34 DQFKALG---LVTPAG-----VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSA 103 (274)
T ss_dssp HHHHHTT---CCCCSE-----EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcC---CCCCCe-----EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 3455555 555544 899999999999999999999887 79999999987766666677788888875 222
Q ss_pred c-ccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCccccc
Q psy13234 991 N-NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVG 1069 (1192)
Q Consensus 991 n-GTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VG 1069 (1192)
+ -++.|||....+.-++++ . . ...+. +.
T Consensus 104 p~i~~~Deid~~~~~r~~~~----------------------------------~----~--~~~~~-----------~~ 132 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRE----------------------------------T----G--ASVRV-----------VN 132 (274)
T ss_dssp SEEEEEETCTTTCC-------------------------------------------------CTTH-----------HH
T ss_pred CCeEeeehhhhhhcccCCCc----------------------------------c----h--HHHHH-----------HH
Confidence 2 244455542211000000 0 0 00000 11
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCC------------CCCHHHHHHHHHHHH
Q psy13234 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS------------ALDTKTERNIQSALN 1118 (1192)
Q Consensus 1070 ErG~~LSGGQKQRIALARALLrdP~ILLLDEATS------------ALD~eTE~~Iq~aL~ 1118 (1192)
+.-..|||||+||..+|+|+..+|++| |||+. --|.+....|.+.+.
T Consensus 133 ~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 133 QLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp HHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred HHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 111258999999999999999999985 99974 347777777766553
No 150
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.84 E-value=9.2e-10 Score=114.18 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=53.2
Q ss_pred eecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcccccc
Q psy13234 923 IALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 993 (1192)
Q Consensus 923 ~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGT 993 (1192)
...+|+. ++|+||||||||||+++|.|+++ .+.++|.++...+....+..++|++|++.+|...
T Consensus 3 ~m~~g~i---i~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (205)
T 3tr0_A 3 AMNKANL---FIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAM 66 (205)
T ss_dssp --CCCCE---EEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred cCCCCcE---EEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHH
Confidence 3445555 99999999999999999999974 6899999888777666788999999999888753
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.83 E-value=2.7e-09 Score=119.50 Aligned_cols=136 Identities=17% Similarity=0.196 Sum_probs=90.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccCCCHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEE 1009 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~asdEe 1009 (1192)
|+.++++|++||||||+++.|.+.+.+++| +++.++.+|++ ..+..+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~--------- 155 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT--------- 155 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH---------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH---------
Confidence 444999999999999999999999998778 35777778773 4444444431
Q ss_pred HHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q psy13234 1010 VKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTL 1089 (1192)
Q Consensus 1010 V~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIALARAL 1089 (1192)
.+ +..+ +| -... ..++..+.+++++
T Consensus 156 ---~~----------------------------------~~~g-------l~----~~~~------~~~~~l~~al~~~- 180 (296)
T 2px0_A 156 ---YA----------------------------------ELLQ-------AP----LEVC------YTKEEFQQAKELF- 180 (296)
T ss_dssp ---HH----------------------------------TTTT-------CC----CCBC------SSHHHHHHHHHHG-
T ss_pred ---HH----------------------------------HhcC-------CC----eEec------CCHHHHHHHHHHh-
Confidence 11 1111 11 1111 1234567888875
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc---CCceEEEE--ecChhHHHh-cCEEEEEeCCEEEE
Q psy13234 1090 LKAPQIVLLDEATSALDTKTERNIQSALNRVC---ASRTTIIV--AHRLSTIIH-ADEILVMHAGEIVE 1152 (1192)
Q Consensus 1090 LrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~---~grTvIvI--AHRLSTI~~-aDrIlVLe~G~IvE 1152 (1192)
++|+++|+| |+++|+..+..+.+..+-.. .+.+++++ +|..+.+.. +|++-.++.|.++-
T Consensus 181 -~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 181 -SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp -GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred -cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 999999999 99999876655554333222 23456666 899877765 77766667777765
No 152
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.81 E-value=9.3e-10 Score=128.77 Aligned_cols=159 Identities=19% Similarity=0.152 Sum_probs=91.0
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccc
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 992 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnG 992 (1192)
.-++++ +.++.|+. ++|||++|||||||++.|.+..+ .+.+.+.. .+...+++|+|+.. ..-
T Consensus 146 ~~~~i~---lelk~g~~---VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ft-----Tl~p~~G~V~~~~~-~~~ 207 (416)
T 1udx_A 146 EKRRLR---LELMLIAD---VGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFT-----TLSPNLGVVEVSEE-ERF 207 (416)
T ss_dssp CEEEEE---EEECCSCS---EEEECCGGGCHHHHHHHHCSSCC------EECCCTTC-----SSCCEEEEEECSSS-CEE
T ss_pred eEeeee---eEEcCCCE---EEEECCCCCcHHHHHHHHHcCCc------cccCcccc-----eecceeeEEEecCc-ceE
Confidence 445676 88888888 99999999999999999999843 34554443 34456888888651 111
Q ss_pred cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCC
Q psy13234 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERG 1072 (1192)
Q Consensus 993 TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG 1072 (1192)
++.|+..+.. .+. +. .+. .. +..+.++.+. ..+.-+.-. +.+ -
T Consensus 208 ~l~DtpGli~-~a~--------------~~-----~~L---------~~-~fl~~~era~--~lL~vvDls-~~~----~ 250 (416)
T 1udx_A 208 TLADIPGIIE-GAS--------------EG-----KGL---------GL-EFLRHIARTR--VLLYVLDAA-DEP----L 250 (416)
T ss_dssp EEEECCCCCC-CGG--------------GS-----CCS---------CH-HHHHHHTSSS--EEEEEEETT-SCH----H
T ss_pred EEEecccccc-chh--------------hh-----hhh---------hH-HHHHHHHHHH--hhhEEeCCc-cCC----H
Confidence 2222211110 000 00 000 00 0000011111 111111000 222 2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCceEEEEec
Q psy13234 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAH 1131 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~--~grTvIvIAH 1131 (1192)
.+||+||+||.++||++..+|.|+++ +.+|..++. ..+.+.+.. .+.+++.||.
T Consensus 251 ~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~-~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 251 KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEE-AVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHH-HHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHH-HHHHHHHHHHhcCCeEEEEEC
Confidence 36999999999999999999999999 889987663 333333322 3567777763
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.81 E-value=2.4e-09 Score=119.70 Aligned_cols=140 Identities=13% Similarity=0.125 Sum_probs=95.8
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
.+++.+.|.... ++++ +. +|+. ++++|++|+||||+++.|.+.+.+..|+|.+.|.|++.-...
T Consensus 79 ~~~l~~~~~~~~---~~i~---~~--~~~~---i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~----- 142 (295)
T 1ls1_A 79 YEALKEALGGEA---RLPV---LK--DRNL---WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR----- 142 (295)
T ss_dssp HHHHHHHTTSSC---CCCC---CC--SSEE---EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-----
T ss_pred HHHHHHHHCCCC---ceee---cC--CCeE---EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-----
Confidence 566667774321 4565 55 5555 999999999999999999999999999999999887531110
Q ss_pred EEEEcCCCccccccHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhc
Q psy13234 980 IGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILS 1059 (1192)
Q Consensus 980 Ig~VPQDp~LFnGTIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~ 1059 (1192)
+.+. ..+ +..++. -
T Consensus 143 ----------------~ql~------------~~~----------------------------------~~~~l~----~ 156 (295)
T 1ls1_A 143 ----------------EQLR------------LLG----------------------------------EKVGVP----V 156 (295)
T ss_dssp ----------------HHHH------------HHH----------------------------------HHHTCC----E
T ss_pred ----------------HHHH------------Hhc----------------------------------ccCCeE----E
Confidence 0000 000 111110 0
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHcCCceEEEEe
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA-TSALDTKTERNIQSALNRVCASRTTIIVA 1130 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEA-TSALD~eTE~~Iq~aL~~l~~grTvIvIA 1130 (1192)
+|.| ..-+-.+-||.+|+++..++++++|+||| ++++|...-+.+.+..+....+.+++++.
T Consensus 157 ~~~~---------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 157 LEVM---------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EECC---------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEcC---------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 1111 11233456789999998899999999999 99999988888888877776677766654
No 154
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.78 E-value=1e-09 Score=116.33 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=61.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYD-------------VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlyd-------------p~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIre 996 (1192)
|+.++|+||||||||||++.|.+.++ |..|+ +||+|..-++.+.+++.+ .|+.+++.+++.+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~~~~ 93 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGSYQG 93 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhhhhc
Confidence 44499999999999999999999986 77888 799999999999999986 6999999999999
Q ss_pred HHhcccc
Q psy13234 997 NIQYARI 1003 (1192)
Q Consensus 997 NI~~G~~ 1003 (1192)
| .||.+
T Consensus 94 n-~YGt~ 99 (197)
T 3ney_A 94 N-MFGTK 99 (197)
T ss_dssp E-EEEEE
T ss_pred e-ecccc
Confidence 9 59864
No 155
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.72 E-value=1.4e-08 Score=114.24 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=35.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 969 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~ 969 (1192)
|+.++++|++||||||+++.|.+.+.++.|+|.+.+.|..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 3449999999999999999999999999999999887753
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.72 E-value=8.7e-10 Score=113.99 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy13234 1082 RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV 1120 (1192)
Q Consensus 1082 RIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l 1120 (1192)
...+||++.++|+++++| |||+|.++-+.+.+.|.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 467899999999999999 9999999999998887653
No 157
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.68 E-value=3.8e-09 Score=126.43 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=95.4
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhc--CCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHh
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFR--FYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQ 999 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlR--lydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~ 999 (1192)
+.+..+.. ++|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. =|+++. ++.+|
T Consensus 162 ldL~~~pH---lLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 162 ADLAKMPH---LLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTD-- 228 (512)
T ss_dssp EEGGGSCS---EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCS--
T ss_pred EEcccCce---EEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecC--
Confidence 44555555 99999999999999999886 67778899999888887655444331 133321 11111
Q ss_pred ccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHH
Q psy13234 1000 YARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGE 1079 (1192)
Q Consensus 1000 ~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQ 1079 (1192)
.++..++.+.+ ..+ -+++ .+.++..++.+. .+|+..+.+ .+||||
T Consensus 229 -------~~~a~~~L~~~------------------~~E-merR-~~ll~~~Gv~~i-----~~yn~~~~~---~~s~G~ 273 (512)
T 2ius_A 229 -------MKDAANALRWC------------------VNE-MERR-YKLMSALGVRNL-----AGYNEKIAE---ADRMMR 273 (512)
T ss_dssp -------HHHHHHHHHHH------------------HHH-HHHH-HHHHHHTTCSSH-----HHHHHHHHH---HHHTTC
T ss_pred -------HHHHHHHHHHH------------------HHH-HHHH-HHHHHHcCCccH-----HHHHHHHHH---HhhcCC
Confidence 12222222000 000 0111 133344443322 123322222 368888
Q ss_pred HHHH----------HHHHHhcCCCC-EEEEeCCCCCCCHHHHHHHHHHHH---HHcC--CceEEEEecChh
Q psy13234 1080 KQRV----------AIARTLLKAPQ-IVLLDEATSALDTKTERNIQSALN---RVCA--SRTTIIVAHRLS 1134 (1192)
Q Consensus 1080 KQRI----------ALARALLrdP~-ILLLDEATSALD~eTE~~Iq~aL~---~l~~--grTvIvIAHRLS 1134 (1192)
+||. ++||++-+.|. ++++||+++.+|.. .+.+.+.+. +..+ |.++|++|||++
T Consensus 274 ~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 274 PIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp CCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred cccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8753 46788888898 78899999999843 234444443 3222 679999999998
No 158
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.65 E-value=2.2e-10 Score=129.65 Aligned_cols=84 Identities=13% Similarity=0.237 Sum_probs=60.9
Q ss_pred CccccccccceeecCC----cccceEEEEcCCCCcHHHHHHHHhcCC----CCCCceEEECCeecCCCChHhhcccEEEE
Q psy13234 912 GTRDAIGCLRMIALES----QLVWYLLQVGQSGAGKSTIIRLLFRFY----DVESGDIFIDNQNIKTVSQASLRQAIGVV 983 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~G----e~Ge~VAIVG~SGSGKSTLlrLLlRly----dp~sGsI~IDG~DI~~i~~~sLR~~Ig~V 983 (1192)
.++++++ +.+.+| +.-+.++++||+|+|||||++++.+.. .+.+|++..++.|+..+....-+..|.++
T Consensus 32 ~~~~~l~---~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 32 NVKKKLS---LALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp HHHHHHH---HHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred HHHHHHH---HHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3445555 555554 222449999999999999999999998 77888888887776543222125679999
Q ss_pred cCCCccccccHHHHHh
Q psy13234 984 PQDTVLFNNSIKFNIQ 999 (1192)
Q Consensus 984 PQDp~LFnGTIreNI~ 999 (1192)
+|...++. |+.|++.
T Consensus 109 DE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 109 DEIHRLNK-AVEELLY 123 (334)
T ss_dssp ETGGGCCH-HHHHHHH
T ss_pred cchhhcCH-HHHHHHH
Confidence 99888776 7877774
No 159
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.64 E-value=1.4e-09 Score=112.08 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=60.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCC-CCceEE----------ECCeecCCCChHhhcccEEEEcCCCccccccHHHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDV-ESGDIF----------IDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNI 998 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp-~sGsI~----------IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI 998 (1192)
|+.++|+||||||||||+++|.+.+++ ..|+|. +||.|...++.+.+++. ++|+.+++.+++.+|
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n- 80 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA- 80 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc-
Confidence 445999999999999999999999874 445553 47888888888888874 579999999999999
Q ss_pred hccccCCCHHHHHHHh
Q psy13234 999 QYARINASEEEVKEAA 1014 (1192)
Q Consensus 999 ~~G~~~asdEeV~eAa 1014 (1192)
.||.+ .+++.+++
T Consensus 81 ~yg~~---~~~i~~~l 93 (180)
T 1kgd_A 81 MYGTK---LETIRKIH 93 (180)
T ss_dssp EEEEE---HHHHHHHH
T ss_pred ccccc---HHHHHHHH
Confidence 67754 34444444
No 160
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=2e-08 Score=113.12 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=42.6
Q ss_pred eecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE---CCeecCCCChHhhcccEEEEcCCCcccc-----ccH
Q psy13234 923 IALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFI---DNQNIKTVSQASLRQAIGVVPQDTVLFN-----NSI 994 (1192)
Q Consensus 923 ~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~I---DG~DI~~i~~~sLR~~Ig~VPQDp~LFn-----GTI 994 (1192)
.+.+|+. ++|+||||+|||||++.|.|..+|..|+|.+ +|+++.... +..+..+++|+|+|-++. -|+
T Consensus 169 ~~~~G~~---~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 169 PHFQDKT---TVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGTTSE---EEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred hhcCCCE---EEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH
Confidence 4445555 9999999999999999999999999999999 898876533 222223899999998764 477
Q ss_pred HHHHh
Q psy13234 995 KFNIQ 999 (1192)
Q Consensus 995 reNI~ 999 (1192)
||+.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 9984
No 161
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.56 E-value=3.2e-10 Score=131.65 Aligned_cols=164 Identities=13% Similarity=0.157 Sum_probs=103.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHhc------------CCCCCCceEEECCeecCCCCh-Hhhccc---EEEEcCCCccccc-
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFR------------FYDVESGDIFIDNQNIKTVSQ-ASLRQA---IGVVPQDTVLFNN- 992 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlR------------lydp~sGsI~IDG~DI~~i~~-~sLR~~---Ig~VPQDp~LFnG- 992 (1192)
|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+.. ..-++. ..++.+.|-+..+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 33499999999999999999999 678999999999854321110 011122 2366677776653
Q ss_pred cHHHHHhccccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcCh-HHHHhcCCCCCcccccCC
Q psy13234 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI-HERILSFPDGYDTQVGER 1071 (1192)
Q Consensus 993 TIreNI~~G~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~L-hd~I~~LP~GyDT~VGEr 1071 (1192)
|-.+++. .+..... +.++. -..+.... |. .
T Consensus 100 s~~e~L~--------~~fl~~i----------------------------------r~~d~il~Vvd~~~---d~----~ 130 (392)
T 1ni3_A 100 STGVGLG--------NAFLSHV----------------------------------RAVDAIYQVVRAFD---DA----E 130 (392)
T ss_dssp CSSSSSC--------HHHHHHH----------------------------------TTCSEEEEEEECCC---TT----C
T ss_pred cHHHHHH--------HHHHHHH----------------------------------HHHHHHHHHHhccc---cc----e
Confidence 2122210 0111111 11111 00111111 11 2
Q ss_pred CCCCChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-cCC-ceEEEEecChhHHH-hcCEEE-EE
Q psy13234 1072 GLKLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRV-CAS-RTTIIVAHRLSTII-HADEIL-VM 1145 (1192)
Q Consensus 1072 G~~LSGGQKQRIALARALLrdP--~ILLLDEATSALD~eTE~~Iq~aL~~l-~~g-rTvIvIAHRLSTI~-~aDrIl-VL 1145 (1192)
-..+||+ .|| +|.++||+++.+|.++-+...+.+++. .++ .|+ ++|.+..+. -||+|. +|
T Consensus 131 i~~v~~~------------~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L 196 (392)
T 1ni3_A 131 IIHVEGD------------VDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYL 196 (392)
T ss_dssp SSCCSSS------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHH
T ss_pred eeeeccc------------cCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHh
Confidence 2235554 299 999999999999999998888888876 444 553 399998764 589999 99
Q ss_pred eCC-EEEEEcCH
Q psy13234 1146 HAG-EIVERGRH 1156 (1192)
Q Consensus 1146 e~G-~IvE~Gth 1156 (1192)
++| +++..|+.
T Consensus 197 ~~G~~~~~~~~~ 208 (392)
T 1ni3_A 197 TETKQPIRKGDW 208 (392)
T ss_dssp HTTCSCGGGSCC
T ss_pred ccCCceeecCCC
Confidence 999 88766653
No 162
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.55 E-value=1.4e-08 Score=120.77 Aligned_cols=55 Identities=18% Similarity=-0.008 Sum_probs=49.1
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~ 973 (1192)
+.+++++ +.+.+ +. +||+||||||||||+++|.|+++|++|+|.++|+++...+.
T Consensus 18 ~~l~~vs---l~i~~-e~---~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 18 NGFFART---FDFDE-LV---TTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp TTEEEEE---EECCS-SE---EEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ccccceE---EEEcc-ce---EEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 3577787 88888 77 99999999999999999999999999999999999976553
No 163
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.53 E-value=1.4e-08 Score=106.33 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=42.5
Q ss_pred cCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccc
Q psy13234 925 LESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYAR 1002 (1192)
Q Consensus 925 ~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~ 1002 (1192)
+..++|+.++|+|+|||||||+++.|.+.++ .+.+++||++++++ +|+.++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 3444455599999999999999999999875 48999999999987 6776543
No 164
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.51 E-value=2.3e-08 Score=106.08 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=44.3
Q ss_pred HHHHHHHHHhc--CCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH--cCCceEEEEecChhH---------HHhcCEEEE
Q psy13234 1080 KQRVAIARTLL--KAPQIVLLDEATSAL--DTKTERNIQSALNRV--CASRTTIIVAHRLST---------IIHADEILV 1144 (1192)
Q Consensus 1080 KQRIALARALL--rdP~ILLLDEATSAL--D~eTE~~Iq~aL~~l--~~grTvIvIAHRLST---------I~~aDrIlV 1144 (1192)
.+....++.++ .+|+++++|++|+-+ |....+.....+.+. ..++|+|+++|.... ...||.|+.
T Consensus 114 ~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~ 193 (247)
T 2dr3_A 114 REFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIR 193 (247)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEE
Confidence 34444444444 479999999999887 543333343444333 247899999998764 356899999
Q ss_pred EeC
Q psy13234 1145 MHA 1147 (1192)
Q Consensus 1145 Le~ 1147 (1192)
|+.
T Consensus 194 L~~ 196 (247)
T 2dr3_A 194 LDL 196 (247)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.49 E-value=9.3e-09 Score=125.48 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=98.2
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCC-ceEEECCeecCCCChHhhcccEEEEcCCCccc
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVES-GDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~s-GsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LF 990 (1192)
.++++++ +.+.+|+. ++|+||+|+|||||+++|.++.++.. |.+.+++.+... ....++++||...
T Consensus 48 ~~l~~l~---~~i~~g~~---vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-----~~p~i~~~p~g~~-- 114 (604)
T 3k1j_A 48 HAVEVIK---TAANQKRH---VLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-----NMPRIKTVPACQG-- 114 (604)
T ss_dssp HHHHHHH---HHHHTTCC---EEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-----TSCEEEEEETTHH--
T ss_pred hhHhhcc---ccccCCCE---EEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-----cCCcEEEEecchH--
Confidence 4556666 78888877 99999999999999999999999988 889998876654 4557999988541
Q ss_pred cccHHHHHhc---cccCCCHHHHHHHhhhhhhhhhhc--c---CCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCC
Q psy13234 991 NNSIKFNIQY---ARINASEEEVKEAATSADIHERIL--S---FPDGYDTQYARINASEEEVKEAATSADIHERILSFPD 1062 (1192)
Q Consensus 991 nGTIreNI~~---G~~~asdEeV~eAa~~a~lh~~i~--~---~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~ 1062 (1192)
..+.+-... ...+..+......- ...++... + .+.++... ......+.+....
T Consensus 115 -~~~~e~~~~~~~~~~~~r~~~~~~~~--~~~~~nl~v~~~~~~~~~~v~~---------------~~~~~~~L~G~~~- 175 (604)
T 3k1j_A 115 -RRIVEKYREKAKSQESVKSSNMRLKS--TVLVPKLLVDNCGRTKAPFIDA---------------TGAHAGALLGDVR- 175 (604)
T ss_dssp -HHHHHHHHHHHHHHTCC-------------CCCEEEECCTTCSSCCEEEC---------------TTCCHHHHHCEEC-
T ss_pred -HHHHHHHHHhhccchhhhhhcccccc--cccccceeeccccCCCCCEEEc---------------CCCCHHhcCceEE-
Confidence 001111000 00000000000000 00000000 0 00000000 0111111221110
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy13234 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR 1119 (1192)
Q Consensus 1063 GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~ 1119 (1192)
++. .....+|+|++|++..++....++.+|+|||... |+++....+.+.|++
T Consensus 176 -~~~---~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 176 -HDP---FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp -CCC---C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred -ech---hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 111 1123499999999999999999999999999998 798888888888864
No 166
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.47 E-value=3e-08 Score=122.41 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=60.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDV--ESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNI 998 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp--~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI 998 (1192)
+.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.|++.+|.+.++.++++.||
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nl 78 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFL 78 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEE
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEE
Confidence 344999999999999999999987765 77999 899999999999999999999999999988777776
No 167
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.47 E-value=3e-10 Score=124.68 Aligned_cols=88 Identities=13% Similarity=0.023 Sum_probs=60.9
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++++...|.. ...+++++ +.+++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++.
T Consensus 52 l~~l~~~~~~-~~~l~~~~---~~~~~g-----vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~ 120 (278)
T 1iy2_A 52 LKEIVEFLKN-PSRFHEMG---ARIPKG-----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAAR 120 (278)
T ss_dssp HHHHHHHHHC-HHHHHHTT---CCCCCE-----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHH
T ss_pred HHHHHHHHHC-HHHHHHcC---CCCCCe-----EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHH
Confidence 4555555532 34566666 655544 89999999999999999999886 7999999988765544455566
Q ss_pred EEEEcCCCc-ccc-ccHHHHH
Q psy13234 980 IGVVPQDTV-LFN-NSIKFNI 998 (1192)
Q Consensus 980 Ig~VPQDp~-LFn-GTIreNI 998 (1192)
+++++|++. .+. -++.|||
T Consensus 121 i~~~~~~~~~~~~~i~~iDei 141 (278)
T 1iy2_A 121 VRDLFETAKRHAPCIVFIDEI 141 (278)
T ss_dssp HHHHHHHHHTSCSEEEEEETH
T ss_pred HHHHHHHHHhcCCcEEehhhh
Confidence 777777653 222 2445555
No 168
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.47 E-value=1.6e-08 Score=106.62 Aligned_cols=70 Identities=23% Similarity=0.186 Sum_probs=53.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCC-CCceEE----------ECCeecCCCChHhhcccEEEEcCCCccccccHHHHH
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDV-ESGDIF----------IDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNI 998 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp-~sGsI~----------IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI 998 (1192)
|+.++|+|||||||||+++.|.+.+++ ..+.+. .||++...++.+.+++.+ .|+.+++.+++.+|
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~~- 83 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVGN- 83 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEccc-
Confidence 445999999999999999999999987 333333 467777777777777765 68888888888777
Q ss_pred hcccc
Q psy13234 999 QYARI 1003 (1192)
Q Consensus 999 ~~G~~ 1003 (1192)
.||.+
T Consensus 84 ~yg~~ 88 (208)
T 3tau_A 84 YYGTP 88 (208)
T ss_dssp EEEEE
T ss_pred cCCCc
Confidence 56653
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.46 E-value=2.9e-08 Score=102.73 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy13234 1083 VAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV 1120 (1192)
Q Consensus 1083 IALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l 1120 (1192)
...||++.++|++.++| |||+|.+.-+.+.+.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999 9999999988888777654
No 170
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.38 E-value=2.4e-08 Score=107.99 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=39.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC--------hHhhcccEEEEcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--------QASLRQAIGVVPQD 986 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~--------~~sLR~~Ig~VPQD 986 (1192)
.++|+||||||||||+++|.|++.|++|+|.+||.++...+ ....+..+++|+|+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 48999999999999999999999999999999999984332 33457889999995
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.35 E-value=6.1e-07 Score=102.73 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH-----cCCceEEEEecChh------
Q psy13234 1081 QRVAIARTLLKA--PQIVLLDEATSAL----------DT---KTERNIQSALNRV-----CASRTTIIVAHRLS------ 1134 (1192)
Q Consensus 1081 QRIALARALLrd--P~ILLLDEATSAL----------D~---eTE~~Iq~aL~~l-----~~grTvIvIAHRLS------ 1134 (1192)
|-+.++|++.++ |+++|+||+++-+ |+ ..++.+.+.++++ ..++|+|+++|-.+
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 456688888865 9999999999998 32 1223344444433 23799999999543
Q ss_pred ----------HH-HhcCEEEEEeCCEEEEEcC
Q psy13234 1135 ----------TI-IHADEILVMHAGEIVERGR 1155 (1192)
Q Consensus 1135 ----------TI-~~aDrIlVLe~G~IvE~Gt 1155 (1192)
.+ ..||.++.++.+++...|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 13 3589999998877655444
No 172
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.31 E-value=3.4e-09 Score=114.34 Aligned_cols=88 Identities=13% Similarity=0.019 Sum_probs=59.5
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhccc
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~ 979 (1192)
++++...|.. +..+++++ +.+++| ++|+||+|||||||++++.+... .|.|.++|.++.+......++.
T Consensus 28 l~~l~~~~~~-~~~~~~~~---~~~~~g-----~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~ 96 (254)
T 1ixz_A 28 LKEIVEFLKN-PSRFHEMG---ARIPKG-----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAAR 96 (254)
T ss_dssp HHHHHHHHHC-HHHHHHTT---CCCCSE-----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHH
T ss_pred HHHHHHHHHC-HHHHHHcC---CCCCCe-----EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHH
Confidence 5555555532 34566666 655544 89999999999999999999876 7999999988755444444556
Q ss_pred EEEEcCCCc-cc-cccHHHHH
Q psy13234 980 IGVVPQDTV-LF-NNSIKFNI 998 (1192)
Q Consensus 980 Ig~VPQDp~-LF-nGTIreNI 998 (1192)
++.++|+.. .+ .-++.|||
T Consensus 97 i~~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 97 VRDLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HHHHHHHHTTSSSEEEEEETH
T ss_pred HHHHHHHHHhcCCeEEEehhh
Confidence 666666543 22 22444555
No 173
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.26 E-value=8.6e-07 Score=102.01 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=84.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC-----------CCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhcc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYD-----------VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYA 1001 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlyd-----------p~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G 1001 (1192)
++|||++|+|||||++.|.|... |+.|.|.++|.++. +....|++.|.|.-.-...+.-+
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl--- 252 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL--- 252 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH---
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH---
Confidence 99999999999999999999865 67799999997653 23345656554431110011000
Q ss_pred ccCCCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHH
Q psy13234 1002 RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQ 1081 (1192)
Q Consensus 1002 ~~~asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQ 1081 (1192)
+..+.+++--+.....++... .....+.+.+.++..++. ..| --.|+..--.+|+|++|
T Consensus 253 ----------~~~~~aD~il~VvD~s~~~~~----~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~ 311 (364)
T 2qtf_A 253 ----------SEAKYSDALILVIDSTFSENL----LIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYK 311 (364)
T ss_dssp ----------HGGGGSSEEEEEEETTSCHHH----HHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHH
T ss_pred ----------HHHHhCCEEEEEEECCCCcch----HHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHH
Confidence 001111111111111111000 000011223333332221 112 11224444457888999
Q ss_pred HHHHH----HHh-cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q psy13234 1082 RVAIA----RTL-LKAPQIVLLDEATSALDTKTERNIQSALNRVC 1121 (1192)
Q Consensus 1082 RIALA----RAL-LrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~ 1121 (1192)
|++++ |++ ..+|++ +||||+|.++-..+.+.|.+..
T Consensus 312 ~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 312 KLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 88877 776 545555 8999999999999988887643
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.25 E-value=2e-06 Score=101.49 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHHhc--CCCCEEEEeCCCCCCCHH--------HHHHHHHHHHHHc--CCceEEEEec----------
Q psy13234 1074 KLSGGEKQRVAIARTLL--KAPQIVLLDEATSALDTK--------TERNIQSALNRVC--ASRTTIIVAH---------- 1131 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALL--rdP~ILLLDEATSALD~e--------TE~~Iq~aL~~l~--~grTvIvIAH---------- 1131 (1192)
.+|++|.+ +.||++. .+|+++|+|+++.-.+.. .-..+.+.|+++. .+.|+|+++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 68999876 6777776 579999999999877431 1244555566543 3689999999
Q ss_pred -Chh---------HHHhcCEEEEEeCCEE
Q psy13234 1132 -RLS---------TIIHADEILVMHAGEI 1150 (1192)
Q Consensus 1132 -RLS---------TI~~aDrIlVLe~G~I 1150 (1192)
|+. .-..||.|++|+.++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 132 2346999999987654
No 175
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.17 E-value=2.1e-07 Score=112.55 Aligned_cols=60 Identities=27% Similarity=0.329 Sum_probs=45.0
Q ss_pred CcccceEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEE-ECCeecCC-------CCh---HhhcccEEEEcCC
Q psy13234 927 SQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESG-DIF-IDNQNIKT-------VSQ---ASLRQAIGVVPQD 986 (1192)
Q Consensus 927 Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sG-sI~-IDG~DI~~-------i~~---~sLR~~Ig~VPQD 986 (1192)
.++|+.++|+|+||||||||+++|.+.+.|++| +|. +||.++.+ ++. ...++++++|+|+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~ 437 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE 437 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 344555999999999999999999999999987 785 99987643 122 1234556777775
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.16 E-value=2.5e-07 Score=95.82 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=38.2
Q ss_pred ecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCc
Q psy13234 924 ALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV 988 (1192)
Q Consensus 924 i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~ 988 (1192)
+.+|+. ++|+|||||||||++++|.+.+.|+.| +.+ +...+.-. ...+..+++++|++.
T Consensus 3 i~~g~~---i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 3 NEKGLL---IVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp -CCCCE---EEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCE---EEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 345555 999999999999999999999977655 222 22222221 112234777777653
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.15 E-value=2e-07 Score=97.31 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=47.9
Q ss_pred CcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCccccc-cHHHHH
Q psy13234 927 SQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIKFNI 998 (1192)
Q Consensus 927 Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnG-TIreNI 998 (1192)
.+.|+.++|+|++||||||++++|.+.+ |.+.+||.++..-. ...+..+++++|++.++.. ++.+|+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCcccccHHHHHHHH
Confidence 3445559999999999999999999987 99999998875321 1222357889998765542 445554
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.11 E-value=3.7e-06 Score=95.94 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=33.4
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhc--CCCCCCceEEECCee
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFR--FYDVESGDIFIDNQN 967 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlR--lydp~sGsI~IDG~D 967 (1192)
..+++++ +.++ . +++||++|||||||++.|.| +.++.+|.+.-....
T Consensus 25 ~~l~~i~---~~lp---~---I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~ 73 (360)
T 3t34_A 25 SALPTLW---DSLP---A---IAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLV 73 (360)
T ss_dssp CCC-------CCCC---E---EEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEE
T ss_pred ccccccc---ccCC---E---EEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceE
Confidence 3455554 4444 5 99999999999999999999 778888877544443
No 179
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.10 E-value=7.2e-06 Score=93.60 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=50.8
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHcCCceEEEEe--cChh
Q psy13234 1074 KLSGGEKQRVAIARTLLKAPQIVLLD-EATSALDTKTERNIQSALNRVCASRTTIIVA--HRLS 1134 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALLrdP~ILLLD-EATSALD~eTE~~Iq~aL~~l~~grTvIvIA--HRLS 1134 (1192)
.+|+||+|++. |.+...|+-++++| ++++++|.+....+.+.+.+...++.+|+|. |++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 57999999887 66667788899999 9999999998888888888776688899998 7764
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.06 E-value=2.3e-07 Score=96.80 Aligned_cols=42 Identities=29% Similarity=0.444 Sum_probs=36.2
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCCCCCceE--EECCeecCC
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDI--FIDNQNIKT 970 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI--~IDG~DI~~ 970 (1192)
++|+.++|+|+|||||||++++|.+.+. ..|.+ .+||.++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 4455599999999999999999999988 77988 999987754
No 181
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.04 E-value=2.8e-08 Score=114.98 Aligned_cols=143 Identities=12% Similarity=0.157 Sum_probs=83.2
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCCcccc
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 991 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFn 991 (1192)
.++++++ +.+++|+. ++|+||+|||||||+++|.+.+ +|++..-+ .+.+.++..++++||+..+|-
T Consensus 157 ~~l~~~~---~~i~~~~~---i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~-----~~~~~~~~~lg~~~q~~~~l~ 222 (377)
T 1svm_A 157 DFLKCMV---YNIPKKRY---WLFKGPIDSGKTTLAAALLELC---GGKALNVN-----LPLDRLNFELGVAIDQFLVVF 222 (377)
T ss_dssp HHHHHHH---HCCTTCCE---EEEECSTTSSHHHHHHHHHHHH---CCEEECCS-----SCTTTHHHHHGGGTTCSCEEE
T ss_pred HHHHhcc---cccCCCCE---EEEECCCCCCHHHHHHHHHhhc---CCcEEEEe-----ccchhHHHHHHHhcchhHHHH
Confidence 3556666 77777777 9999999999999999999854 67776511 112233345788899876532
Q ss_pred ccHHHHHhcccc---CCCH-HHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHH---cChH----HHHh-c
Q psy13234 992 NSIKFNIQYARI---NASE-EEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS---ADIH----ERIL-S 1059 (1192)
Q Consensus 992 GTIreNI~~G~~---~asd-EeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~---A~Lh----d~I~-~ 1059 (1192)
|++..... +... +.+. ++..+.+.+.- ..+. +.+. -
T Consensus 223 ----dd~~~~~~~~r~l~~~~~~~----------------------------~~~~l~~~ldG~v~v~~~tn~~~~l~al 270 (377)
T 1svm_A 223 ----EDVKGTGGESRDLPSGQGIN----------------------------NLDNLRDYLDGSVKVNLEKKHLNKRTQI 270 (377)
T ss_dssp ----TTCCCSTTTTTTCCCCSHHH----------------------------HHHTTHHHHHCSSCEEECCSSSCCEEEC
T ss_pred ----HHHHHHHHHHhhccccCcch----------------------------HHHHHHHHhcCCCeEeeccCchhhHHHh
Confidence 34432211 0000 0000 01111111110 0000 0000 0
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHhcCCCCEEE-EeCCCC
Q psy13234 1060 FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVL-LDEATS 1103 (1192)
Q Consensus 1060 LP~GyDT~VGErG~~LSGGQKQRIALARALLrdP~ILL-LDEATS 1103 (1192)
+|.| .+.++-..+++|.+||++.+.+++.+|++++ ||+|++
T Consensus 271 f~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 271 FPPG---IVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp CCCE---EEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hcCc---ccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 1222 2334455689999999999999999999988 999987
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.01 E-value=1.7e-06 Score=90.07 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhH---HHhcCEEEEEe
Q psy13234 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST---IIHADEILVMH 1146 (1192)
Q Consensus 1075 LSGGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLST---I~~aDrIlVLe 1146 (1192)
.+.|+.+|-.+++.++.+|+.+-.+ ++.+++...+.+.+.+.+. .+.++|+-+|.+.. ...||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999999888644333 3345666666665555443 35677877887755 36799999996
No 183
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.99 E-value=6.3e-06 Score=98.11 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHH-----cCCceEEEEecChhHHH----
Q psy13234 1077 GGEKQRVAIARTLLKAPQIVLLDEATS----------ALDTKTERNIQSALNRV-----CASRTTIIVAHRLSTII---- 1137 (1192)
Q Consensus 1077 GGQKQRIALARALLrdP~ILLLDEATS----------ALD~eTE~~Iq~aL~~l-----~~grTvIvIAHRLSTI~---- 1137 (1192)
|++++|-.+++|...+|.||++||+.+ +.|.+.++.+.+.+..+ ..+..+|..||+++.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 788999999999999999999999944 56666666665555443 23567888899986542
Q ss_pred ---hcCEEEEE
Q psy13234 1138 ---HADEILVM 1145 (1192)
Q Consensus 1138 ---~aDrIlVL 1145 (1192)
++|+.+.+
T Consensus 173 R~gRFd~~i~i 183 (476)
T 2ce7_A 173 RPGRFDKKIVV 183 (476)
T ss_dssp STTSSCEEEEC
T ss_pred ccCcceeEeec
Confidence 45665544
No 184
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.96 E-value=6.3e-07 Score=92.49 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeec
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 968 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI 968 (1192)
.++|+|++||||||+.+.|.+. |...+|.-++
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~ 41 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-----GYPVLDLDAL 41 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHH
Confidence 4999999999999999999986 7777776443
No 185
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.94 E-value=3.8e-07 Score=97.64 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=46.9
Q ss_pred CCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC------ChHh----hcccEEEEcCCCcccc
Q psy13234 926 ESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV------SQAS----LRQAIGVVPQDTVLFN 991 (1192)
Q Consensus 926 ~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i------~~~s----LR~~Ig~VPQDp~LFn 991 (1192)
+++.|+.++|+|++||||||++++|.+. +|+|.++|.|...+ .... .++.+++++|++.++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3445666999999999999999999998 79999999886532 1111 2456788888876654
No 186
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.94 E-value=4.1e-06 Score=105.21 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=52.7
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHcCC-ceEEE-EecChhHHH
Q psy13234 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATS-ALDTKTERNIQSALNRVCAS-RTTII-VAHRLSTII 1137 (1192)
Q Consensus 1073 ~~LSGGQKQRIALARALLrdP~ILLLDEATS-ALD~eTE~~Iq~aL~~l~~g-rTvIv-IAHRLSTI~ 1137 (1192)
.-+|+|+.||..++++++.+++++|+|||.. ++|.+.-..+.+.+.+..++ +++++ .||..+.+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 3468999999999999999999999999997 99988777777777666655 55555 489876654
No 187
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.90 E-value=3.3e-06 Score=92.88 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEEEEe
Q psy13234 1082 RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH 1146 (1192)
Q Consensus 1082 RIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIlVLe 1146 (1192)
|++|||||..+|+++++|||| |.++...+ ++....++|+++++|..+....+|++++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 98886544 444456899999999999877788876554
No 188
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.88 E-value=0.0007 Score=82.28 Aligned_cols=119 Identities=16% Similarity=0.248 Sum_probs=80.7
Q ss_pred HHhhhhcccccCCCCcchHHHHHHHHHHHHHhhhheecccchhhhhhHHHHHhhhccccccccCccCCCCcc-cchhHHH
Q psy13234 371 KKIKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKPLV-FRWDYVL 449 (1192)
Q Consensus 371 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 449 (1192)
+.++.+++|++|.+ ..+++++++.++.-+.++..|+..+.++ |.+...... .-+...+
T Consensus 11 ~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------------d~~~~~~~~~~~~~~~~ 69 (582)
T 3b5x_A 11 QTFKRLWTYIRLYK-----AGLVVSTIALVINAAADTYMISLLKPLL----------------DEGFGNAESNFLRILPF 69 (582)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhccCchHHHHHHHH
Confidence 34555666665542 3445566666777888999999999888 333221110 0011111
Q ss_pred HHHHHHhhcCCCCcccchhhhhhhhhhhheeccchhHHHHHHHHhhccccccccccccccceeeeecc
Q psy13234 450 IFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNR 517 (1192)
Q Consensus 450 ~~~~~~~~~g~~~~~~~~~~~~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1192)
+++++.++ .++++-++++++.++.+...+.+..++|+|+..+++.|+-++++|+++..+.+
T Consensus 70 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~ 130 (582)
T 3b5x_A 70 MILGLMFV-------RGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITY 130 (582)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHH
Confidence 12322221 36778889999999999999999999999999999999999999998755443
No 189
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.85 E-value=2.5e-06 Score=87.03 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=41.9
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCe--ecCCCCh----HhhcccEEEEcCCCc
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ--NIKTVSQ----ASLRQAIGVVPQDTV 988 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~--DI~~i~~----~sLR~~Ig~VPQDp~ 988 (1192)
+...+| . ++|+||||||||||+++|.++..+..|...-.+. ++-.... ..-+..|.++.|++.
T Consensus 22 ~~~~~g-~---~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 22 IPFSKG-F---TAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp EECCSS-E---EEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred EecCCC-c---EEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 444444 4 9999999999999999999988887775433221 1111110 024567999999863
No 190
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.82 E-value=3.7e-05 Score=86.78 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=32.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc----CCceEEEEecChhHH
Q psy13234 1091 KAPQIVLLDEATSALDTKTERNIQSALNRVC----ASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1091 rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~----~grTvIvIAHRLSTI 1136 (1192)
.+|.++++||+... |.+.-..+.+.+.+.. .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999987 8776666666664433 367888889988543
No 191
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.81 E-value=7.4e-06 Score=92.72 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=57.9
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCh----Hhh-----cccEEEE-cCCCcccc
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----ASL-----RQAIGVV-PQDTVLFN 991 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~----~sL-----R~~Ig~V-PQDp~LFn 991 (1192)
+...+++. ++++|++|+||||++..|.+.+.+..|+|.+.+.|+..... ..+ +..+.++ +|++....
T Consensus 100 ~~~~~~~v---I~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p 176 (320)
T 1zu4_A 100 FKENRLNI---FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADP 176 (320)
T ss_dssp CCTTSCEE---EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCH
T ss_pred ccCCCCeE---EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCH
Confidence 55555555 99999999999999999999999999999999999865431 234 6789999 77755544
Q ss_pred c-cHHHHHh
Q psy13234 992 N-SIKFNIQ 999 (1192)
Q Consensus 992 G-TIreNI~ 999 (1192)
. ++++|+.
T Consensus 177 ~~~~~~~l~ 185 (320)
T 1zu4_A 177 ASVVFDAIK 185 (320)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 3 4556654
No 192
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.72 E-value=5e-05 Score=89.18 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=46.3
Q ss_pred cccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 900 MEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 900 fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
.+++...|.... ++++ +. +++. ++++|++||||||++..|.+.+.+..|+|.+.+.|+..-
T Consensus 79 ~~~L~~~~~~~~---~~i~---l~--~~~v---i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 79 YEALKEALGGEA---RLPV---LK--DRNL---WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (425)
T ss_dssp HHHHHHHTTSSC---CCCC---CC--SSEE---EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH
T ss_pred HHHHHHHhCCCc---cccc---CC--CCeE---EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc
Confidence 344555554322 4555 54 4555 999999999999999999999999999999988887653
No 193
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.71 E-value=9.1e-05 Score=85.12 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=41.5
Q ss_pred ecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceE-EECCeecCCCChHhhcccEEEEcCCCc
Q psy13234 924 ALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDI-FIDNQNIKTVSQASLRQAIGVVPQDTV 988 (1192)
Q Consensus 924 i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI-~IDG~DI~~i~~~sLR~~Ig~VPQDp~ 988 (1192)
+++|+. +.|.||+|||||||+..+.+...+..|.+ ++|+.+..+ . ...+++++.+|+..
T Consensus 58 i~~G~i---~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~--~-~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 58 YPRGRI---VEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD--P-VYAKNLGVDLKSLL 117 (356)
T ss_dssp EETTEE---EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC--H-HHHHHHTCCGGGCE
T ss_pred ccCCcE---EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc--h-HHHHHcCCchhhhh
Confidence 344555 99999999999999999999888877765 777754322 1 24455666665543
No 194
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.68 E-value=1.3e-06 Score=104.43 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=49.4
Q ss_pred CccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCC
Q psy13234 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT 987 (1192)
Q Consensus 912 ~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp 987 (1192)
..+++++ +.+++| +.|+||+|+|||||++++.+... .|.|.++|.++.+......++++..++|+.
T Consensus 54 ~~~~~lg---~~ip~G-----vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a 119 (499)
T 2dhr_A 54 SRFHEMG---ARIPKG-----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETA 119 (499)
T ss_dssp GGTTTTS---CCCCSE-----EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTS
T ss_pred hhhhhcc---CCCCce-----EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHH
Confidence 4556666 555544 89999999999999999999875 789999998886654444445555666654
No 195
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.67 E-value=6.6e-06 Score=90.07 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=34.6
Q ss_pred cccccccc-eeeecCCCCccccccccceeecC---CcccceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 896 IEENMEED-QFGFRKGKGTRDAIGCLRMIALE---SQLVWYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 896 I~~~fenV-sFsY~~~~~vL~~ISvL~~~i~~---Ge~Ge~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++ ++|+ +++|..+.++++++| +.+.+ |+. ++|+|+|||||||+.++|.+.+
T Consensus 18 l~--~~~~~~~~~~~~~~~l~~~~---~~i~~~l~g~~---i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 18 LE--TGSLLHSPFDEEQQILKKKA---EEVKPYLNGRS---MYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHH---HTTHHHHTTCC---EEEECSTTSCHHHHHHHHHHHH
T ss_pred eE--EcceeeEEecCcchhhhhhh---hhhhhhcCCCE---EEEECCCCCCHHHHHHHHHHhc
Confidence 55 8899 999955567899999 98888 887 9999999999999999998854
No 196
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.65 E-value=8.7e-05 Score=79.23 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVESG 959 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~sG 959 (1192)
++++|++|+|||||++.|+|-..+.+|
T Consensus 32 i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 999999999999999999987665555
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.62 E-value=1.8e-05 Score=89.27 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhc---CCCCEEEEeCCCCCCCHH-------HH--HHHHHH---HHHHc--CCceEEEEecCh
Q psy13234 1079 EKQRVAIARTLL---KAPQIVLLDEATSALDTK-------TE--RNIQSA---LNRVC--ASRTTIIVAHRL 1133 (1192)
Q Consensus 1079 QKQRIALARALL---rdP~ILLLDEATSALD~e-------TE--~~Iq~a---L~~l~--~grTvIvIAHRL 1133 (1192)
+.|.+..+++++ .+++++|+|+.++-.+.+ ++ +.+.+. |.+.. .++|+|++.|-.
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 346777788887 579999999999876432 12 123333 33332 278999988854
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.61 E-value=1.4e-05 Score=83.57 Aligned_cols=46 Identities=20% Similarity=0.088 Sum_probs=39.1
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChH
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA 974 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~ 974 (1192)
.|+.++|+|+|||||||+++.|.+.+++.+|.|.+.+.|....+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 3455999999999999999999999999999999888877665543
No 199
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.60 E-value=0.0013 Score=80.15 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=80.0
Q ss_pred hhhcccccCCCCcchHHHHHHHHHHHHHhhhheecccchhhhhhHHHHHhhhccccccccCccCCCCc-ccchhHHHHHH
Q psy13234 374 KTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKPL-VFRWDYVLIFV 452 (1192)
Q Consensus 374 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 452 (1192)
|.+++|+.|. +...++++++.++.-+.++..|++.+.++ |....... ...|...++++
T Consensus 12 ~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~~i----------------d~~~~~~~~~~~~~~~~~~~ 70 (587)
T 3qf4_A 12 KTLARYLKPY-----WIFAVLAPLFMVVEVICDLSQPTLLARIV----------------DEGIARGDFSLVLKTGILML 70 (587)
T ss_dssp CCGGGGTGGG-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHccCCHHHHHHHHHHHH
Confidence 3455666654 34566777788888899999999999998 44332211 11111222233
Q ss_pred HHHhhcCCCCcccchhhhhhhhhhhheeccchhHHHHHHHHhhccccccccccccccceeee
Q psy13234 453 GFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRV 514 (1192)
Q Consensus 453 ~~~~~~g~~~~~~~~~~~~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1192)
++-++ ..+++-++++++.++.+...+++..++|+|+..+++.|+-++++|+++..
T Consensus 71 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r 125 (587)
T 3qf4_A 71 IVALI-------GAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITR 125 (587)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHH
Confidence 22221 25677788999999999999999999999999999999999999987543
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.57 E-value=7.2e-05 Score=88.03 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=33.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeec
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 968 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI 968 (1192)
..++++|++||||||++..|.+.+.+..++|.+-+.|+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 34999999999999999999999999989998877664
No 201
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.57 E-value=0.00069 Score=82.34 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=80.1
Q ss_pred HHhhhhcccccCCCCcchHHHHHHHHHHHHHhhhheecccchhhhhhHHHHHhhhccccccccCccCCCCccc-chhHHH
Q psy13234 371 KKIKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKPLVF-RWDYVL 449 (1192)
Q Consensus 371 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 449 (1192)
+.++.+++|+.|. +..+++++++.++.-+.++..|+..+.++ |.+....... -+..++
T Consensus 11 ~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------------d~~~~~~~~~~~~~~~~ 69 (582)
T 3b60_A 11 QTFRRLWPTIAPF-----KAGLIVAGIALILNAASDTFMLSLLKPLL----------------DDGFGKTDRSVLLWMPL 69 (582)
T ss_dssp HHHHHHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHHHHHHTHHH----------------HSSTTSTTHHHHHHSHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhccCchHHHHHHHH
Confidence 3455566666544 23445556666777788899999999988 5443221100 000111
Q ss_pred HHHHHHhhcCCCCcccchhhhhhhhhhhheeccchhHHHHHHHHhhccccccccccccccceeeee
Q psy13234 450 IFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVM 515 (1192)
Q Consensus 450 ~~~~~~~~~g~~~~~~~~~~~~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1192)
+++++..+ .++++-++++++.++.+...+.+..++|+|+..+++.|+-++++|+++..+
T Consensus 70 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~ 128 (582)
T 3b60_A 70 VVIGLMIL-------RGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRI 128 (582)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHH
Confidence 22332222 357788899999999999999999999999999999999999999876544
No 202
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.57 E-value=0.001 Score=80.71 Aligned_cols=122 Identities=18% Similarity=0.284 Sum_probs=83.1
Q ss_pred hhhhcccccCCCCcchHHHHHHHHHHHHHhhhheecccchhhhhhHHHHHhhhccccccccCccCCCCcccc--------
Q psy13234 373 IKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKPLVFR-------- 444 (1192)
Q Consensus 373 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 444 (1192)
+|.+++|++|.+ ...++.+++.++.-++++..|++.+.++ |.+........
T Consensus 2 ~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~~i----------------d~~~~~~~~~~~~~~~~~~ 60 (578)
T 4a82_A 2 IKRYLQFVKPYK-----YRIFATIIVGIIKFGIPMLIPLLIKYAI----------------DGVINNHALTTDEKVHHLT 60 (578)
T ss_dssp HHHHHHHHGGGH-----HHHHHHHHHHHTTTHHHHHHHHHHHHHH----------------HHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhcCCchhhHHHHHHH
Confidence 455666766643 3455666677778888999999999988 43322111000
Q ss_pred hhHHHHHHHHHhhcCCCCcccchhhhhhhhhhhheeccchhHHHHHHHHhhccccccccccccccceeeeeccCCccc
Q psy13234 445 WDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSI 522 (1192)
Q Consensus 445 ~~~~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si 522 (1192)
+...++++++.+ ..++++-++++++.++++...+.+..++|+|+..+++.|+-++++|+++..+....+.+
T Consensus 61 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i 131 (578)
T 4a82_A 61 IAIGIALFIFVI-------VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131 (578)
T ss_dssp HHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHH
Confidence 111112222222 13577889999999999999999999999999999999999999999876554444433
No 203
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.54 E-value=6.8e-06 Score=83.85 Aligned_cols=42 Identities=29% Similarity=0.325 Sum_probs=34.4
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCeecCC
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYDVESG--DIFIDNQNIKT 970 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sG--sI~IDG~DI~~ 970 (1192)
++|+.++|+|++||||||+++.|.+.+++ .| .|.+||.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 45667999999999999999999998876 57 77888766654
No 204
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.48 E-value=4.9e-05 Score=88.08 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=44.7
Q ss_pred ccccccccccceeeecCCCCccc--------------cccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 893 ENKIEENMEEDQFGFRKGKGTRD--------------AIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 893 ~g~I~~~fenVsFsY~~~~~vL~--------------~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+++. |+|++|.||.++..++ |+. +.+.+|++ ++|+|+||+|||||++.|.|+.
T Consensus 131 ~~ri~--Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~---~pi~rGQr---~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKIL--FENLTPLHANSRLRMERGNGSTEDLTARVLDLA---SPIGRGQR---GLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCC--TTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHH---SCCBTTCE---EEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCce--eccccccCCCCccccccCCCCcccccceeeeee---eeecCCcE---EEEecCCCCChhHHHHHHHHHH
Confidence 45667 9999999998777776 444 66666666 9999999999999999999975
No 205
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.46 E-value=3.6e-05 Score=77.88 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=32.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 970 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~ 970 (1192)
|+.++|+|++||||||+++.|.+.+ |.+.+|+.++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~ 44 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP 44 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence 4559999999999999999999875 889999977653
No 206
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.45 E-value=0.00056 Score=78.05 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=27.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q psy13234 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALLrdP~ILLLDEATSALD 1106 (1192)
+||++|+||++.|...+.+++++|.|+|+.++|
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 688999999988888888888888888876554
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.44 E-value=0.00032 Score=76.95 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH----------HHHHHHHHHHc-----CCceEEEEecChhH-----
Q psy13234 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE----------RNIQSALNRVC-----ASRTTIIVAHRLST----- 1135 (1192)
Q Consensus 1076 SGGQKQRIALARALLrdP~ILLLDEATSALD~eTE----------~~Iq~aL~~l~-----~grTvIvIAHRLST----- 1135 (1192)
++++++|-.+++|...+|.+|++||+.+-.+.... ..+...+.... .+..+|..|+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 36788888888888889999999999887654321 12333333322 12345667887543
Q ss_pred HHhcCEEEEEe
Q psy13234 1136 IIHADEILVMH 1146 (1192)
Q Consensus 1136 I~~aDrIlVLe 1146 (1192)
.+++|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 45688877664
No 208
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.43 E-value=7.3e-05 Score=83.82 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=25.8
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYDVESG 959 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sG 959 (1192)
+.+..+.|.||+|+|||||++.+.+...+..|
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~ 74 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 33445999999999999999999987765433
No 209
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.39 E-value=7.3e-05 Score=87.66 Aligned_cols=67 Identities=27% Similarity=0.410 Sum_probs=44.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC------------CCCCceEEECCeecCCCChHhhcccEEEEcCCCccccc-cHHHHHh
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY------------DVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIKFNIQ 999 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly------------dp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnG-TIreNI~ 999 (1192)
++|||++|+|||||++.|.|.. ++.+|.+.+||.++.-++...+|+..++.+|+...|.. +..+++.
T Consensus 183 vaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~ 262 (439)
T 1mky_A 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIE 262 (439)
T ss_dssp EEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHh
Confidence 9999999999999999999985 37889999999988877777778778877787766653 2334554
No 210
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.36 E-value=7.1e-05 Score=77.88 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=24.3
Q ss_pred CCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 910 GKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 910 ~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
....++++| +.+.+|+. ++|+|++||||||+.+.|.+.+
T Consensus 11 ~~~~~~~~~---~~~~~~~~---i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLY---FQSNAMVR---IFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------------CCCE---EEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCcee---EecCCCCE---EEEEcCCCCCHHHHHHHHHHHc
Confidence 356778888 88888887 9999999999999999999876
No 211
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.30 E-value=0.0038 Score=76.01 Aligned_cols=126 Identities=14% Similarity=0.243 Sum_probs=85.6
Q ss_pred hhhhcccccCCCCcchHHHHHHHHHHHHHhhhheecccchhhhhhHHHHHhhhccccccccCccCCCC-cc---cchhHH
Q psy13234 373 IKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKP-LV---FRWDYV 448 (1192)
Q Consensus 373 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~ 448 (1192)
++.+++|++|. +..+++++++.++.-+..+..|++.+.++ |.+.... .. .-|..+
T Consensus 7 ~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~~i----------------d~~~~~~~~~~~~~~~~~~ 65 (595)
T 2yl4_A 7 ARKLLGLAYPE-----RRRLAAAVGFLTMSSVISMSAPFFLGKII----------------DVIYTNPTVDYSDNLTRLC 65 (595)
T ss_dssp HHHHHHHHGGG-----HHHHHHHHHHHHHHHHHHTTHHHHHHHHH----------------HHHHHCTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhcCchhhhHHHHHHH
Confidence 44555666543 33455566666777788999999998887 2221110 00 011122
Q ss_pred HHHHHHHhhcCCCCcccchhhhhhhhhhhheeccchhHHHHHHHHhhccccccccccccccceeeeeccCCccccccc
Q psy13234 449 LIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLL 526 (1192)
Q Consensus 449 ~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~vl 526 (1192)
..++++.++ .++++-++++++.++.+...+.+..++|+|+..+++.|+-++++|+++..+.+..+.+....
T Consensus 66 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~ 136 (595)
T 2yl4_A 66 LGLSAVFLC-------GAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSV 136 (595)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 223333332 24678889999999999999999999999999999999999999999888776666654433
No 212
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.26 E-value=0.00029 Score=82.84 Aligned_cols=67 Identities=12% Similarity=0.295 Sum_probs=42.7
Q ss_pred cC-CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHc-CCceEEEEecChh-HHHh-cCEEEE-EeCCEEEEEcCH
Q psy13234 1090 LK-APQIVLLDEATSALDT-KTERNIQSALNRVC-ASRTTIIVAHRLS-TIIH-ADEILV-MHAGEIVERGRH 1156 (1192)
Q Consensus 1090 Lr-dP~ILLLDEATSALD~-eTE~~Iq~aL~~l~-~grTvIvIAHRLS-TI~~-aDrIlV-Le~G~IvE~Gth 1156 (1192)
++ +|++|++||+..-.+. .+...+...+.+.. .++++|+.||+.. .+.. .|++.- ++.|.+++.+.+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 35 8999999999887764 56667777777654 4588888999842 2211 122221 345666665543
No 213
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.18 E-value=0.00015 Score=82.43 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=21.0
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcC
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+|+.+.|.||+|||||||+..+..-
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444999999999999999887764
No 214
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.15 E-value=0.00015 Score=73.01 Aligned_cols=32 Identities=41% Similarity=0.486 Sum_probs=26.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 965 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG 965 (1192)
|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 345999999999999999999998754 56665
No 215
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.00057 Score=72.97 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHcCCceEEE
Q psy13234 1076 SGGEKQRVAIARTLLKAPQIVLLDEATS-ALDTKTERNIQSALNRVCASRTTII 1128 (1192)
Q Consensus 1076 SGGQKQRIALARALLrdP~ILLLDEATS-ALD~eTE~~Iq~aL~~l~~grTvIv 1128 (1192)
+.|.-.+. .++-+++-+++|+|||-. ++|........+.+.+..+++.+|+
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEE
Confidence 34555444 344689999999999976 5777766555555555555533333
No 216
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.14 E-value=0.00015 Score=82.24 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=35.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHH
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDV--ESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp--~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIre 996 (1192)
.+||+|||||||||++++|.+++++ ++|. +++++||.+..+....+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~~~~~~l~ 141 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFLYSNAKLE 141 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccccchhhhh
Confidence 4999999999999999999999874 4443 56677777766554433
No 217
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.11 E-value=2.2e-05 Score=80.75 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=40.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhc------CCCCCCceEEECCe--ecCCCCh--------HhhcccEEEEcCCCccccccHH
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFR------FYDVESGDIFIDNQ--NIKTVSQ--------ASLRQAIGVVPQDTVLFNNSIK 995 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlR------lydp~sGsI~IDG~--DI~~i~~--------~sLR~~Ig~VPQDp~LFnGTIr 995 (1192)
.++|+|++||||||+++.|.+ +.+|..|...++.. |-..++. +.+++....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 489999999999999999998 34454443222211 1111110 1123334567788899999999
Q ss_pred HHHhcc
Q psy13234 996 FNIQYA 1001 (1192)
Q Consensus 996 eNI~~G 1001 (1192)
+|+.|.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 998864
No 218
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.05 E-value=8.4e-05 Score=77.62 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=23.9
Q ss_pred cCCcccceEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 925 LESQLVWYLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 925 ~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.+|.. ++|+|||||||||+++.|...++
T Consensus 10 ~~~~~---i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPP---LVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCC---EEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCE---EEEECCCCCCHHHHHHHHHHhCc
Confidence 34555 99999999999999999998774
No 219
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.05 E-value=0.0005 Score=76.75 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+++|||++|+|||||++.|.|.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4999999999999999999985
No 220
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.02 E-value=0.00015 Score=81.74 Aligned_cols=38 Identities=29% Similarity=0.249 Sum_probs=30.0
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGD 960 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGs 960 (1192)
..+..|+... +.+.||+|+||||+++.+.+...+..++
T Consensus 39 ~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 39 KFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 5566665433 8999999999999999999987766543
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.99 E-value=0.00011 Score=77.23 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=34.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCeec
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESG--DIFIDNQNI 968 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sG--sI~IDG~DI 968 (1192)
|..++|+|++||||||+++.|.+.++|..| .+.+||.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 444999999999999999999999998889 899987554
No 222
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.99 E-value=0.00059 Score=76.08 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=29.8
Q ss_pred cCCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHc-CCceEEEEecCh
Q psy13234 1090 LKAPQIVLLDEATSA-LDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133 (1192)
Q Consensus 1090 LrdP~ILLLDEATSA-LD~eTE~~Iq~aL~~l~-~grTvIvIAHRL 1133 (1192)
++++++|++||+..- -|..+.+.+...+.... .++.+|+.+++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 457999999998763 34466677777776544 356667777643
No 223
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.97 E-value=0.0076 Score=69.22 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=44.6
Q ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHcC-CceEEEEecChhHH-------------HhcCEEEEEeCC
Q psy13234 1091 KAPQIVLLDEATSALD---TKTERNIQSALNRVCA-SRTTIIVAHRLSTI-------------IHADEILVMHAG 1148 (1192)
Q Consensus 1091 rdP~ILLLDEATSALD---~eTE~~Iq~aL~~l~~-grTvIvIAHRLSTI-------------~~aDrIlVLe~G 1148 (1192)
+.|.++++||+=.-++ +...+.+.+.+++.++ +..++++||+++.+ .+|+-.+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 4588999999988885 6677778888877655 57899999999755 456777777654
No 224
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.96 E-value=0.00029 Score=71.18 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.7
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445669999999999999999999864
No 225
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.89 E-value=0.00073 Score=79.61 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHH
Q psy13234 1077 GGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1077 GGQKQRIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI 1136 (1192)
+.|++-...++..+++++++|+....+.-....+..+.+.+++ .++.+|+|.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 4588888899999999997776554444334445566666654 578899999887754
No 226
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.89 E-value=5.2e-05 Score=82.25 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=48.7
Q ss_pred eEEEEcCCCCcHHHHHHHHh---cCCCCCCceE--------EECCeecCCCC-hHhhcccEEEEc------CCCcccccc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLF---RFYDVESGDI--------FIDNQNIKTVS-QASLRQAIGVVP------QDTVLFNNS 993 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLl---Rlydp~sGsI--------~IDG~DI~~i~-~~sLR~~Ig~VP------QDp~LFnGT 993 (1192)
.++|+|||||||||+.+.|. |+.-.+.|.+ .-.|.|..+.. ...+-+.+.+.. |+.+|+...
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~~ 90 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGED 90 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCee
Confidence 39999999999999999998 5555666666 24566666543 445555665555 567787778
Q ss_pred HHHHHh
Q psy13234 994 IKFNIQ 999 (1192)
Q Consensus 994 IreNI~ 999 (1192)
|.+||+
T Consensus 91 v~~~ir 96 (233)
T 3r20_A 91 VSSEIR 96 (233)
T ss_dssp CTTGGG
T ss_pred hhhhhc
Confidence 877775
No 227
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.87 E-value=0.0012 Score=83.39 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=25.9
Q ss_pred eecCCcccceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13234 923 IALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV 956 (1192)
Q Consensus 923 ~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp 956 (1192)
.+.+++. +.|+||||||||||+++|.+..++
T Consensus 234 ~i~~~~~---vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 234 GVKPPRG---ILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCCE---EEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCCe---EEEECcCCCCHHHHHHHHHHHcCC
Confidence 3455555 999999999999999999998754
No 228
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.82 E-value=0.0014 Score=70.80 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC----CceEEEEecChhH
Q psy13234 1076 SGGEKQRVAIARTLL---KAPQIVLLDEATSALDTKTERNIQSALNRVCA----SRTTIIVAHRLST 1135 (1192)
Q Consensus 1076 SGGQKQRIALARALL---rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~----grTvIvIAHRLST 1135 (1192)
+.||+.+-.+.|+++ ++++++|+--..+.++. .+..+.+.+.+.+. ++++|+++|....
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 445666677778774 88887665443345554 44555555655432 5789999997553
No 229
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.78 E-value=0.00031 Score=80.23 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=34.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i 971 (1192)
.++|+|++|||||||++.|.|...+++|+|.+.+.|....
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 3999999999999999999999999999999988877654
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.76 E-value=0.0019 Score=70.93 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDI 961 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~sGsI 961 (1192)
+.++||+|+||||+++.+.+...+.+|.+
T Consensus 50 ~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred EEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 99999999999999999999887766643
No 231
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.74 E-value=0.00033 Score=72.39 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=35.2
Q ss_pred eeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhc----CC----CCCCceEEECCeecC
Q psy13234 905 FGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFR----FY----DVESGDIFIDNQNIK 969 (1192)
Q Consensus 905 FsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlR----ly----dp~sGsI~IDG~DI~ 969 (1192)
++|+.-.+++++++ +..+++ + ++++|++|+|||||++.+.+ .+ .++.+.+.++|.++.
T Consensus 7 ~~~~~~~~~l~~~~---~~~~~~-k---i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~ 72 (198)
T 1f6b_A 7 WIYSGFSSVLQFLG---LYKKTG-K---LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 72 (198)
T ss_dssp ------CHHHHHHT---CTTCCE-E---EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhh---ccCCCc-E---EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEE
Confidence 44554444555555 444433 3 89999999999999999986 22 334567777775543
No 232
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.72 E-value=0.00057 Score=70.50 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=33.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHH
Q psy13234 1091 KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 1136 (1192)
Q Consensus 1091 rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI 1136 (1192)
.+|.++++||+-. +|.+....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999876 78887777777776554567788888886543
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.68 E-value=0.00043 Score=83.55 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=34.9
Q ss_pred CCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCChHhhcccEEEEcCCC
Q psy13234 926 ESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT 987 (1192)
Q Consensus 926 ~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp 987 (1192)
+|+. +.++||+|+|||||+++|.+...+..|+|..+|..-..--....++.+|..||..
T Consensus 107 ~g~~---vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~ 165 (543)
T 3m6a_A 107 KGPI---LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165 (543)
T ss_dssp CSCE---EEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CH
T ss_pred CCCE---EEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence 4555 9999999999999999999999999999998885432222234456778777653
No 234
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.68 E-value=0.0011 Score=68.35 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVE 957 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~ 957 (1192)
+.|.||+|+|||||++.+.......
T Consensus 57 ~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999866543
No 235
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.67 E-value=0.0056 Score=65.76 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeec
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 968 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI 968 (1192)
+.|+||+|+||||+++++.+..... -+.+++.++
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 8999999999999999999876532 366666544
No 236
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.61 E-value=0.0017 Score=72.92 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=20.4
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhc
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlR 952 (1192)
++|+.+.|.|++|+||||++.-++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3455599999999999999877664
No 237
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.55 E-value=0.0022 Score=69.64 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|.||+|+||||+++.+.+..
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 9999999999999999998754
No 238
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.46 E-value=0.00081 Score=72.19 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=29.8
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFID 964 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~ID 964 (1192)
+.|..++|.|++||||||+++.|...+++ .+.+...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 34555999999999999999999999988 6666543
No 239
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.45 E-value=0.0015 Score=65.24 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++++|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999864
No 240
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.45 E-value=0.00051 Score=70.32 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=30.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceE-EECCe
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDI-FIDNQ 966 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI-~IDG~ 966 (1192)
|..+.++|++||||||+++.|.+.+.+..|.+ .+|+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 44599999999999999999999988777765 45553
No 241
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.36 E-value=0.00088 Score=69.43 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN 967 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~D 967 (1192)
.++|+|++||||||+++.|.+.+ |...+|+-+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 39999999999999999998876 556666544
No 242
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.35 E-value=0.0011 Score=66.70 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+++++|++|+|||||++.|.+-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3999999999999999999984
No 243
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.00093 Score=74.51 Aligned_cols=43 Identities=9% Similarity=0.317 Sum_probs=33.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhH
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 1135 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLST 1135 (1192)
+++|+++|| ...++.++...+.+.+++..++..+|+++++.+.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 5678888888888888876656667778877653
No 244
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.33 E-value=0.013 Score=57.84 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVE 957 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~ 957 (1192)
+.|.||+|+|||++++.+.......
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcc
Confidence 9999999999999999998765543
No 245
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.33 E-value=0.00065 Score=77.13 Aligned_cols=52 Identities=23% Similarity=0.119 Sum_probs=40.4
Q ss_pred ccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC
Q psy13234 913 TRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 970 (1192)
Q Consensus 913 vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~ 970 (1192)
++++++ +...+|.. ++|+|++|+||||+++.|.+.+.+..|++.+-+.|...
T Consensus 45 ~~~~l~---~~~~~~~~---i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 45 LLDAIM---PYCGNTLR---LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHG---GGCSCSEE---EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHhCC---cccCCCEE---EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 344444 55555555 99999999999999999999998888888887776644
No 246
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.31 E-value=0.0013 Score=71.11 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=31.8
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 969 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~ 969 (1192)
+.+..+.++|++||||||+.+.|.+.+. .|.+.+||-+++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 3344599999999999999999998775 367888886554
No 247
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.28 E-value=0.0027 Score=66.23 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.+.|+||+|+||||+++.+.+...
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 399999999999999999987554
No 248
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.26 E-value=0.0077 Score=67.77 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCee
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN 967 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~D 967 (1192)
.+.|.||+|+||||+++.+.+.......-+.+++..
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 399999999999999999998876544455555543
No 249
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.26 E-value=0.0088 Score=66.34 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=24.3
Q ss_pred ecCCcccceEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 924 ALESQLVWYLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 924 i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
+.+++. +.|.||+|+||||+++.+.+...
T Consensus 46 ~~~~~~---vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKG---VLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSE---EEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCce---EEEECCCCcCHHHHHHHHHHHhC
Confidence 345555 99999999999999999998653
No 250
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.14 E-value=0.012 Score=67.63 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=43.0
Q ss_pred HHHHHHHHhc--CCCCEEEEeCCCCCCC-HH------------HHHHHHHHHHHH-----cCCceEEEEecChh------
Q psy13234 1081 QRVAIARTLL--KAPQIVLLDEATSALD-TK------------TERNIQSALNRV-----CASRTTIIVAHRLS------ 1134 (1192)
Q Consensus 1081 QRIALARALL--rdP~ILLLDEATSALD-~e------------TE~~Iq~aL~~l-----~~grTvIvIAHRLS------ 1134 (1192)
|...++|.+. .+++++|+|++++-.. .+ .++.+.+.++++ ..++|+|++.|--.
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 4556667664 5799999999998763 22 112334444333 23689999888532
Q ss_pred ----------HH-HhcCEEEEEeCCEEE
Q psy13234 1135 ----------TI-IHADEILVMHAGEIV 1151 (1192)
Q Consensus 1135 ----------TI-~~aDrIlVLe~G~Iv 1151 (1192)
.+ ..||-++.+...++.
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~ 235 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAV 235 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeee
Confidence 12 258888888765543
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.14 E-value=0.0017 Score=67.17 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCee
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQN 967 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~---sGsI~IDG~D 967 (1192)
.++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 39999999999999999999876543 3778887755
No 252
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.08 E-value=6.7e-05 Score=85.76 Aligned_cols=84 Identities=12% Similarity=0.031 Sum_probs=57.0
Q ss_pred CCChHHHHHHHHHHHhc-CCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHcC--CceEEEEecChhHHHhcCE
Q psy13234 1074 KLSGGEKQRVAIARTLL-KAPQIVLLDE---AT------SALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIHADE 1141 (1192)
Q Consensus 1074 ~LSGGQKQRIALARALL-rdP~ILLLDE---AT------SALD~eTE~~Iq~aL~~l~~--grTvIvIAHRLSTI~~aDr 1141 (1192)
.+|+|++||..++++.. .+|++++||| |+ +++|.+....+.++|++..+ +.|+|+++|--..-+-+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45778889999999875 5999999999 54 68999999999999987655 7899999986333344555
Q ss_pred EEEEeCCEEEEEcCHHHH
Q psy13234 1142 ILVMHAGEIVERGRHEEL 1159 (1192)
Q Consensus 1142 IlVLe~G~IvE~GtheEL 1159 (1192)
+.++++ +.+.|+.+||
T Consensus 338 i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISEL 353 (365)
T ss_dssp HHHHHH--HTSCCCCSSC
T ss_pred HHHHHH--HhcccchhHh
Confidence 544432 2334444444
No 253
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.03 E-value=0.0038 Score=69.94 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.+.|.||+|+||||+++.+.+...
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999988663
No 254
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.00 E-value=0.0031 Score=63.94 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVE 957 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~ 957 (1192)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 49999999999999999999975443
No 255
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.00 E-value=0.0025 Score=65.24 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc----CCCC----CCceEEECCeec
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR----FYDV----ESGDIFIDNQNI 968 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR----lydp----~sGsI~IDG~DI 968 (1192)
++++|++|+|||||++.+.+ .+.| +.+++.++|..+
T Consensus 26 i~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 26 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 99999999999999999987 2333 346667777544
No 256
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.98 E-value=0.0032 Score=65.05 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlR 952 (1192)
.++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 499999999999999999999
No 257
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.92 E-value=0.0058 Score=62.27 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHH-hcC----CCCCCc----eEEECCee
Q psy13234 933 LLQVGQSGAGKSTIIRLL-FRF----YDVESG----DIFIDNQN 967 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLL-lRl----ydp~sG----sI~IDG~D 967 (1192)
++++|++|+|||||++.+ -+- +.|+.| .+.++|..
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 999999999999999654 444 677777 67777754
No 258
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.82 E-value=0.0032 Score=72.53 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChhHHHhcCEEE
Q psy13234 1082 RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEIL 1143 (1192)
Q Consensus 1082 RIALARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLSTI~~aDrIl 1143 (1192)
+.+|++|+..+|+++++|||| |.++ +..+++....|.+++.++|..+....+||++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHhcCCEEEEEECcchHHHHHHHHH
Confidence 469999999999999999999 7665 4445555566899999999877666666653
No 259
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.79 E-value=0.0041 Score=62.61 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.+.|+|+|||||||+.+.|..-++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 499999999999999999998664
No 260
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.78 E-value=0.066 Score=58.63 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|.||+|+||||+++.+.+.+
T Consensus 70 vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999888765
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.74 E-value=0.0014 Score=68.04 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVE 957 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~ 957 (1192)
.++|+|++||||||+++.|.+.+++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999999988754
No 262
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.73 E-value=0.018 Score=58.52 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChh
Q psy13234 1091 KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134 (1192)
Q Consensus 1091 rdP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLS 1134 (1192)
.++.++++||+-. ++.+....+.+.+.+...+..+|+++.+..
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 3688999999754 677777777777776555566677777664
No 263
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.71 E-value=0.0056 Score=71.30 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=30.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC-----------CCCCCceEEECCee
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF-----------YDVESGDIFIDNQN 967 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl-----------ydp~sGsI~IDG~D 967 (1192)
+++|||++|+|||||++.|.+. .+|+.|.+.++|..
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r 70 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDER 70 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCcc
Confidence 3999999999999999999998 78889999887753
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.69 E-value=0.0045 Score=61.53 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|++||||||+++.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998654
No 265
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.66 E-value=0.0053 Score=62.94 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=24.1
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcC
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+..+.+.. ++|+|++||||||+.+.|...
T Consensus 5 ~~~~~~~~---I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGIN---ILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCE---EEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCE---EEEECCCCCCHHHHHHHHHHh
Confidence 55555555 999999999999999999875
No 266
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.57 E-value=0.0021 Score=71.93 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=36.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 970 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~ 970 (1192)
|+.++++|++|+||||++..|.+.+.+..|+|.+.+.|.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 44599999999999999999999999999999998888754
No 267
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.56 E-value=0.0038 Score=63.23 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC----CCCCCc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF----YDVESG 959 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl----ydp~sG 959 (1192)
++++|++|+|||||++.+.+- +.|+.|
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 999999999999999999876 355666
No 268
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.51 E-value=0.0058 Score=61.99 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
|..++++|++||||||+.+.|...+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4459999999999999999998644
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.47 E-value=0.033 Score=65.77 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFI 963 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~I 963 (1192)
.++++|++||||||++.-|...+....-++.+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 39999999999999999998877655444443
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.46 E-value=0.0065 Score=59.96 Aligned_cols=19 Identities=42% Similarity=0.707 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q psy13234 932 YLLQVGQSGAGKSTIIRLL 950 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLL 950 (1192)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 271
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.45 E-value=0.0076 Score=66.84 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 965 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG 965 (1192)
..+.|+|+|||||||+++.|..-++ .|.+.||+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3499999999999999999987553 36677776
No 272
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.38 E-value=0.06 Score=57.30 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|.||+|+||||+++.+.+..
T Consensus 42 vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998754
No 273
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.37 E-value=0.036 Score=60.30 Aligned_cols=23 Identities=35% Similarity=0.678 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
+.++||+|+||||+++.+.+..+
T Consensus 53 vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998763
No 274
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.33 E-value=0.024 Score=64.43 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|.||+|+||||+++.+.+..
T Consensus 120 vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 120 ILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 9999999999999999998754
No 275
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.31 E-value=0.02 Score=61.53 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecC-----------hhHHHhcCEEEEEe
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR-----------LSTIIHADEILVMH 1146 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHR-----------LSTI~~aDrIlVLe 1146 (1192)
+++++++||+.- +|.+.-+.+ +.+.+ .+.++|++.|+ ...+.-||.|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999974 665422222 33433 37899999992 34567899998864
No 276
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.29 E-value=0.016 Score=64.14 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.+.||+|+|||+|++.+.+..
T Consensus 39 lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7788999999999999999865
No 277
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.23 E-value=0.0089 Score=60.42 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.+.|+|++||||||+++.|...+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 499999999999999999987543
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.15 E-value=0.0091 Score=60.56 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+.|+|++||||||+.+.|..-+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999997654
No 279
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.09 E-value=0.017 Score=59.85 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=33.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChh-----------HHHhcCEEEEEeC
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS-----------TIIHADEILVMHA 1147 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLS-----------TI~~aDrIlVLe~ 1147 (1192)
+++++++||+-- +|++-...+.+... .+..+|+..++.+ .+..||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999964 65443333322222 3677888788443 4567999987753
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.07 E-value=0.0086 Score=62.68 Aligned_cols=63 Identities=25% Similarity=0.447 Sum_probs=43.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC-------------CCCCceEEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHh
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY-------------DVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQ 999 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly-------------dp~sGsI~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~ 999 (1192)
+.|+||||||||||++.|+.-+ +|-.|+ +||+|..-++.+...+.|. ++-++-.+.+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i~---~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHH---TTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHHH---cCCEEEEEEEcCc-e
Confidence 8899999999999999887543 344565 4888888888777766543 5555555554444 3
Q ss_pred cc
Q psy13234 1000 YA 1001 (1192)
Q Consensus 1000 ~G 1001 (1192)
||
T Consensus 78 YG 79 (186)
T 1ex7_A 78 YG 79 (186)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 281
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.03 E-value=0.019 Score=56.87 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlR 952 (1192)
+++++|++|+|||||++.+.+
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 399999999999999999976
No 282
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.02 E-value=0.012 Score=61.53 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 965 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG 965 (1192)
.++|+|++||||||+++.|.++ |...+|.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 4999999999999999999872 5556654
No 283
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.99 E-value=0.012 Score=60.48 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
..++|+|++||||||+.+.|...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 349999999999999999999887
No 284
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.95 E-value=0.018 Score=56.91 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999998865
No 285
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.94 E-value=0.016 Score=66.75 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhc-----------CCCCCCceEEECCe
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFR-----------FYDVESGDIFIDNQ 966 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlR-----------lydp~sGsI~IDG~ 966 (1192)
-+++|||.+|+|||||++.|.+ -.+|+.|.+.++|.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 3599999999999999999998 45788898888763
No 286
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.92 E-value=0.011 Score=59.70 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+.|+|++||||||+.+.|.+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 38999999999999999998754
No 287
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.89 E-value=0.018 Score=67.64 Aligned_cols=26 Identities=8% Similarity=-0.041 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+|+.+.|.|++|+||||++.-++.-.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44559999999999999998776544
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.87 E-value=0.012 Score=58.89 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlR 952 (1192)
.+.|+|++||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999987
No 289
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.79 E-value=0.13 Score=57.28 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
+.|.||+|+||||+++.+.+...
T Consensus 58 vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECcCCCCHHHHHHHHHHHhC
Confidence 99999999999999999987653
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.74 E-value=0.0088 Score=61.81 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDVES---GDIFIDN 965 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp~s---GsI~IDG 965 (1192)
++|+|+|||||||++..|.+.+.... |.|..|.
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 89999999999999999988765432 4555444
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.73 E-value=0.014 Score=59.09 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+.|+|++||||||+++.|...+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 39999999999999999998554
No 292
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.71 E-value=0.013 Score=59.38 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
..+.|+|++||||||+.+.|...+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 349999999999999999998754
No 293
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.70 E-value=0.013 Score=67.15 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=31.1
Q ss_pred cccccccccceeeecCCCCccccccccceeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCe
Q psy13234 894 NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 966 (1192)
Q Consensus 894 g~I~~~fenVsFsY~~~~~vL~~ISvL~~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~ 966 (1192)
+.+. ++++...|.. +.++++++ +. ++|||++|+|||||++.|++...+..|.+..++.
T Consensus 16 ~~v~--~~~l~~~~~~-k~~~~~~~---~~---------I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 16 GYVG--FANLPNQVHR-KSVKKGFE---FT---------LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp -------CCHHHHHHT-HHHHHCCE---EC---------EEECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred ceEE--eccchHHhCC-eeecCCCC---EE---------EEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 4455 7777666643 23444544 32 8999999999999999999986666665544443
No 294
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.70 E-value=0.037 Score=61.97 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChh
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLS 1134 (1192)
+++++++||+-. +|.+....+.+.+++...+..+|++|++.+
T Consensus 119 ~~~vliiDe~~~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGGG-SCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcch-hcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 578999999754 677777777777766544556677787765
No 295
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.68 E-value=0.012 Score=60.58 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+++||++|+|||||++.+.+.
T Consensus 26 i~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEECSTTSSHHHHHHHTCCE
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 999999999999999999653
No 296
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.66 E-value=0.022 Score=55.31 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998754
No 297
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.64 E-value=0.014 Score=63.38 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|||||||||+.+.|.+-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 48999999999999999998754
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.64 E-value=0.014 Score=59.01 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.+.|+|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999988654
No 299
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.027 Score=55.09 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlR 952 (1192)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 399999999999999999987
No 300
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.58 E-value=0.017 Score=57.94 Aligned_cols=19 Identities=37% Similarity=0.746 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q psy13234 933 LLQVGQSGAGKSTIIRLLF 951 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLl 951 (1192)
.+|+||+||||||++.+|.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999999986
No 301
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.55 E-value=0.11 Score=59.08 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|.||+|+||||+++.+.+..
T Consensus 87 iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 9999999999999999999764
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.54 E-value=0.016 Score=59.53 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYDV 956 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlydp 956 (1192)
..++|.|++||||||+++.|..-+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 34999999999999999999887654
No 303
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.47 E-value=0.019 Score=66.18 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+++|||++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3999999999999999999986
No 304
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.46 E-value=0.038 Score=62.17 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+.|.||+|+||||+++.+.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998754
No 305
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.46 E-value=0.11 Score=57.17 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|.||+|+||||+++.+....
T Consensus 41 vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998743
No 306
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.45 E-value=0.016 Score=59.82 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
..++|+|++||||||+.+.|...+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 349999999999999999998754
No 307
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.45 E-value=0.017 Score=58.86 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|++||||||+.+.|...+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999998654
No 308
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.41 E-value=0.035 Score=56.15 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.|.+-
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999998873
No 309
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.39 E-value=0.017 Score=58.83 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|++||||||+.+.|...+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999998755
No 310
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.36 E-value=0.019 Score=56.13 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999999863
No 311
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.36 E-value=0.018 Score=61.30 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++|+|++||||||+.+.|.+.
T Consensus 19 i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999873
No 312
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.35 E-value=0.018 Score=59.95 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++|+|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999996644
No 313
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.03 Score=58.07 Aligned_cols=20 Identities=25% Similarity=0.695 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 29 i~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 99999999999999998765
No 314
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.30 E-value=0.02 Score=58.28 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.++|.|++||||||+++.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999987663
No 315
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.28 E-value=0.028 Score=54.93 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++++|++|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999988654
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.27 E-value=0.021 Score=57.68 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|++||||||+.+.|...+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999997644
No 317
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.25 E-value=0.019 Score=56.16 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 39999999999999999998754
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.25 E-value=0.02 Score=58.10 Aligned_cols=23 Identities=43% Similarity=0.465 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|++||||||+.+.|...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 39999999999999999998754
No 319
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.23 E-value=0.044 Score=55.01 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 21 LLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999999863
No 320
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.22 E-value=0.021 Score=55.40 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999988875
No 321
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.20 E-value=0.02 Score=58.75 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 49999999999999999998754
No 322
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.18 E-value=0.022 Score=56.84 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+.|+|++||||||+.+.|...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999998644
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.17 E-value=0.019 Score=59.87 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++|+|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999997654
No 324
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.14 E-value=0.022 Score=58.87 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
..++|+|++||||||+++.|...+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999998654
No 325
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.14 E-value=0.021 Score=55.28 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999999764
No 326
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.13 E-value=0.024 Score=55.84 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++++|++|+|||||++.+.+-.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHHHhcCC
Confidence 9999999999999999998643
No 327
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.11 E-value=0.029 Score=56.21 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.|.+-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999999875
No 328
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.09 E-value=0.023 Score=55.20 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999999853
No 329
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.07 E-value=0.025 Score=55.51 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 39999999999999999997643
No 330
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.07 E-value=0.025 Score=56.28 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998744
No 331
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.04 E-value=0.025 Score=57.30 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998755
No 332
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.02 E-value=0.024 Score=55.25 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999999985
No 333
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.01 E-value=0.026 Score=56.43 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.++|+|++||||||+.+.|...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999997643
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.01 E-value=0.028 Score=58.03 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|++||||||+.+.|...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999998754
No 335
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.00 E-value=0.19 Score=56.40 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|.||+|+||||+++.+.+..
T Consensus 48 iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEEESSSSSCHHHHHHHHHHHT
T ss_pred EEEECCCCccHHHHHHHHHHHc
Confidence 8999999999999999999865
No 336
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.99 E-value=0.044 Score=56.17 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999999763
No 337
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.97 E-value=0.023 Score=62.11 Aligned_cols=22 Identities=55% Similarity=0.726 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++||++|+|||||++.|++--
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999998743
No 338
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.96 E-value=0.025 Score=55.17 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999988753
No 339
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.96 E-value=0.024 Score=55.52 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 999999999999999999863
No 340
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.025 Score=57.13 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++++|++|+|||||++.|.+-.
T Consensus 51 i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999998754
No 341
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.95 E-value=0.026 Score=55.34 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999998854
No 342
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.89 E-value=0.027 Score=55.79 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999888763
No 343
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.86 E-value=0.028 Score=55.59 Aligned_cols=21 Identities=38% Similarity=0.581 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.|.+-
T Consensus 12 i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999999863
No 344
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.84 E-value=0.028 Score=55.64 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999999753
No 345
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.81 E-value=0.029 Score=61.13 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999874
No 346
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.77 E-value=0.028 Score=56.40 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDV 956 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp 956 (1192)
++++|++|+|||||++.+.+-+..
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEECCCCCCHHHHHHHHHhhccc
Confidence 999999999999999999987653
No 347
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.75 E-value=0.029 Score=54.71 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999999885
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.71 E-value=0.029 Score=56.59 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|++||||||+.+.|...+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999998644
No 349
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.71 E-value=0.027 Score=56.85 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.|.+-
T Consensus 26 i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999999864
No 350
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.68 E-value=0.028 Score=56.41 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++++|++|+|||||++.+.+-.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 26 VAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHcCc
Confidence 9999999999999999998753
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.67 E-value=0.029 Score=60.46 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++|.|++||||||+.+.|...+
T Consensus 25 I~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998744
No 352
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.65 E-value=0.1 Score=57.05 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChh
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLS 1134 (1192)
+++++++||+-. ++.+....+.+.+.+...+..+|++|++.+
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 478999999754 555666667777776555566777787764
No 353
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.61 E-value=0.032 Score=55.71 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999999853
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.61 E-value=0.028 Score=57.89 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|++||||||+.+.|..-+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 39999999999999999998654
No 355
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.59 E-value=0.024 Score=64.03 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.9
Q ss_pred eecCCcccceEEEEcCCCCcHHHHHHHHhc
Q psy13234 923 IALESQLVWYLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 923 ~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlR 952 (1192)
....|.. ++|+|+||+||||++..|.+
T Consensus 140 v~~~g~~---vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 140 VDVYGVG---VLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEETTEE---EEEEESTTSSHHHHHHHHHH
T ss_pred EEECCEE---EEEEeCCCCCHHHHHHHHHh
Confidence 3336666 99999999999999998887
No 356
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.59 E-value=0.032 Score=58.38 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++|+|++||||||+.+.|...
T Consensus 15 IgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999875
No 357
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.57 E-value=0.13 Score=59.25 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=40.7
Q ss_pred HHHHHHHHhcC--CCCEEEEeCCCCCC-----CH--------HHHHHHHHHHHHH-----cCCceEEEEecChhH-----
Q psy13234 1081 QRVAIARTLLK--APQIVLLDEATSAL-----DT--------KTERNIQSALNRV-----CASRTTIIVAHRLST----- 1135 (1192)
Q Consensus 1081 QRIALARALLr--dP~ILLLDEATSAL-----D~--------eTE~~Iq~aL~~l-----~~grTvIvIAHRLST----- 1135 (1192)
|.+.++|.+.+ +++++|+|..++=. |. ..++.+.+.++++ ..++++|++.|--..
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~f 218 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMY 218 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCccc
Confidence 45667777764 58999999988654 11 1224455555544 235778777774221
Q ss_pred -----------H-HhcCEEEEEeCCE
Q psy13234 1136 -----------I-IHADEILVMHAGE 1149 (1192)
Q Consensus 1136 -----------I-~~aDrIlVLe~G~ 1149 (1192)
+ ..||.++.|..++
T Consensus 219 g~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 219 GNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp -------CHHHHHHHCSEEEEEEEES
T ss_pred CCccccCCcchhhheeeEEEEEEecc
Confidence 1 2478888876443
No 358
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.57 E-value=0.18 Score=59.10 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|.||+|+|||||++.+.+..
T Consensus 170 vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 9999999999999999999865
No 359
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.57 E-value=0.032 Score=55.71 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 14 i~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999999986
No 360
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.48 E-value=0.038 Score=54.72 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 999999999999999998863
No 361
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.46 E-value=0.032 Score=55.83 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3899999999999999999874
No 362
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.45 E-value=0.035 Score=54.17 Aligned_cols=21 Identities=43% Similarity=0.493 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlR 952 (1192)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999999875
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.44 E-value=0.027 Score=56.78 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=16.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
..+.|+|++||||||+.+.|...+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 349999999999999999998654
No 364
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.42 E-value=0.038 Score=57.88 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+.|+|++||||||+.+.|...+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999998755
No 365
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.42 E-value=0.18 Score=62.94 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.++||+|+|||++++.|....
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999875
No 366
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.42 E-value=0.033 Score=60.63 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
++++|++|||||||++.|.|...
T Consensus 6 i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 99999999999999999998753
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.41 E-value=0.034 Score=58.40 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.+.|+|++||||||+.+.|..-+.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999987553
No 368
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.40 E-value=0.043 Score=55.29 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999998864
No 369
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.40 E-value=0.033 Score=54.90 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 17 i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999999875
No 370
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.39 E-value=0.036 Score=54.33 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 10 i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999999965
No 371
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.37 E-value=0.036 Score=58.49 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+.|+|++||||||+++.|..-+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999998654
No 372
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.32 E-value=0.034 Score=60.16 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=25.1
Q ss_pred CCCCEEEEeCCCC-CCC-HHHHHHHHHHHHHHcCCceEEEEec
Q psy13234 1091 KAPQIVLLDEATS-ALD-TKTERNIQSALNRVCASRTTIIVAH 1131 (1192)
Q Consensus 1091 rdP~ILLLDEATS-ALD-~eTE~~Iq~aL~~l~~grTvIvIAH 1131 (1192)
++|+++|+||+-. +.+ ...+...++......++.-++..+|
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 5899999999763 233 2333344444444445667777777
No 373
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.32 E-value=0.037 Score=54.84 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 13 i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 999999999999999998763
No 374
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.29 E-value=0.038 Score=54.48 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999999863
No 375
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.28 E-value=0.12 Score=61.74 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|.||+|+|||++++.+....
T Consensus 241 vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 9999999999999999998743
No 376
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.27 E-value=0.062 Score=53.49 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q psy13234 932 YLLQVGQSGAGKSTIIRLLF 951 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLl 951 (1192)
+++++|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 39999999999999999888
No 377
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.25 E-value=0.04 Score=54.70 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999998864
No 378
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.20 E-value=0.04 Score=54.73 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 21 i~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 99999999999999999985
No 379
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.14 E-value=0.022 Score=63.25 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+||.|+|||||||+.+.|...+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999998744
No 380
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.14 E-value=0.057 Score=54.51 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 20 i~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 20 VVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEECCTTSCHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999999987
No 381
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.13 E-value=0.041 Score=55.38 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.|.+-
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999999763
No 382
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.08 E-value=0.04 Score=60.78 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlR 952 (1192)
.++|+|++||||||+.+.|..
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999985
No 383
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.03 E-value=0.18 Score=55.15 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChh
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLS 1134 (1192)
++.++++||+-. ++.+....+.+.+.+...+..+|+++.+.+
T Consensus 110 ~~~vliiDe~~~-l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 110 SFKIIFLDEADA-LTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp SCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCeEEEEeCCCc-CCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 688999999854 566777777777776544555666666654
No 384
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.97 E-value=0.042 Score=54.89 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 13 i~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999998753
No 385
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.91 E-value=0.047 Score=54.53 Aligned_cols=20 Identities=40% Similarity=0.727 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 21 i~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 99999999999999999885
No 386
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.91 E-value=0.046 Score=55.54 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999998753
No 387
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.90 E-value=0.047 Score=55.64 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999998764
No 388
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.90 E-value=0.03 Score=57.98 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++++|++|+|||||++.|.+--
T Consensus 32 i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 32 IAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 9999999999999999998853
No 389
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.85 E-value=0.046 Score=58.68 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++|+|++|+|||||++.|++-
T Consensus 25 I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 25 IILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEECTTSCHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999999874
No 390
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.85 E-value=0.048 Score=55.08 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999998764
No 391
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.85 E-value=0.05 Score=57.12 Aligned_cols=19 Identities=37% Similarity=0.746 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q psy13234 933 LLQVGQSGAGKSTIIRLLF 951 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLl 951 (1192)
.+|+||+||||||++.+|.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 8999999999999998774
No 392
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.84 E-value=0.034 Score=55.43 Aligned_cols=20 Identities=45% Similarity=0.614 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 21 i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 21 ILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999998873
No 393
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.80 E-value=0.046 Score=55.21 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 11 i~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHc
Confidence 99999999999999999986
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.79 E-value=0.05 Score=54.92 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 23 i~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999999875
No 395
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.75 E-value=0.051 Score=54.05 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 8 i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999988874
No 396
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.71 E-value=0.052 Score=58.36 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++|.|++||||||+.+.|..-+
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998654
No 397
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.70 E-value=0.051 Score=54.73 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 19 i~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999999863
No 398
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.049 Score=55.36 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 26 i~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999998753
No 399
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.68 E-value=0.055 Score=55.15 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999998764
No 400
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.65 E-value=0.15 Score=56.41 Aligned_cols=43 Identities=16% Similarity=0.368 Sum_probs=31.6
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHcCCceEEEEecChhH
Q psy13234 1092 APQIVLLDEATSALD-TKTERNIQSALNRVCASRTTIIVAHRLST 1135 (1192)
Q Consensus 1092 dP~ILLLDEATSALD-~eTE~~Iq~aL~~l~~grTvIvIAHRLST 1135 (1192)
+++++++||+-. +. .+....+.+.+++...+..+|++|.+.+.
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999854 34 55666667777766666778888888663
No 401
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.65 E-value=0.053 Score=53.81 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 11 i~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999998875
No 402
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.64 E-value=0.052 Score=60.55 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+++|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999999974
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.63 E-value=0.051 Score=56.78 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998754
No 404
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.63 E-value=0.052 Score=56.08 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++++|++|+|||||++.|.+-.
T Consensus 15 i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 15 IIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999998754
No 405
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.61 E-value=0.055 Score=55.10 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.|.+-
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999999863
No 406
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.59 E-value=0.053 Score=57.67 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=23.4
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.....|.. +.|+||||||||||+..|..-.
T Consensus 29 ~v~~~g~~---ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 29 LVDIYGLG---VLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEETTEE---EEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEECCEE---EEEECCCCCCHHHHHHHHHHhC
Confidence 34445555 9999999999999998887643
No 407
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.57 E-value=0.056 Score=59.51 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++++|++|+|||||++.|.|-.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 39999999999999999999853
No 408
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.55 E-value=0.085 Score=59.96 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhc
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlR 952 (1192)
..+.|.||+|+|||||+..+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3389999999999999988874
No 409
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.53 E-value=0.073 Score=56.16 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++|||++|+|||||++.+.+.
T Consensus 40 VvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999999864
No 410
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.52 E-value=0.052 Score=55.58 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 27 i~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 999999999999999999864
No 411
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.50 E-value=0.058 Score=56.63 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 32 I~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 32 IILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEECSTTSSHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999999873
No 412
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.42 E-value=0.06 Score=58.38 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
.+.|+|++||||||+++.|...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4999999999999999999875
No 413
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.38 E-value=0.06 Score=54.99 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDV 956 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp 956 (1192)
++++|++|+|||||++.+.+-+.+
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEECCCCCCHHHHHHHHHhcCCC
Confidence 999999999999999998885443
No 414
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.38 E-value=0.06 Score=54.54 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999998863
No 415
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.37 E-value=0.056 Score=54.76 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 26 i~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 999999999999999998863
No 416
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.36 E-value=0.083 Score=54.86 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999999874
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.31 E-value=0.064 Score=56.69 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+.|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998654
No 418
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.30 E-value=0.061 Score=59.98 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
+|||+|++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3999999999999999999985
No 419
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.30 E-value=0.33 Score=65.68 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=24.9
Q ss_pred ecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q psy13234 924 ALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESG 959 (1192)
Q Consensus 924 i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sG 959 (1192)
+++|+. +.|.||+|+|||||+..+........|
T Consensus 729 l~~G~l---VlI~G~PG~GKTtLal~lA~~aa~~g~ 761 (1706)
T 3cmw_A 729 LPMGRI---VEIYGPESSGKTTLTLQVIAAAQREGK 761 (1706)
T ss_dssp EETTSE---EEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCce---EEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 445555 999999999999999888765544333
No 420
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.30 E-value=0.062 Score=53.94 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999998763
No 421
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.28 E-value=0.062 Score=54.98 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999998853
No 422
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.27 E-value=0.053 Score=61.94 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.++|+||||||||||.+.|...+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 399999999999999999987664
No 423
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.25 E-value=0.064 Score=54.05 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 19 i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 19 VIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999999985
No 424
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.24 E-value=0.053 Score=54.77 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++++|++|+|||||++.+.+-.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999998653
No 425
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.22 E-value=0.064 Score=55.06 Aligned_cols=20 Identities=30% Similarity=0.703 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 99999999999999999875
No 426
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.20 E-value=0.064 Score=54.94 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++||++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 399999999999999999986
No 427
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.17 E-value=0.066 Score=54.29 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999998864
No 428
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.17 E-value=0.061 Score=55.39 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 28 i~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 28 LVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999999873
No 429
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.16 E-value=0.058 Score=54.19 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999999863
No 430
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.15 E-value=0.071 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
+.|+||+|+||||+++.+.+.+.
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999987653
No 431
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.13 E-value=0.068 Score=54.38 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 31 i~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999998763
No 432
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.11 E-value=0.41 Score=53.76 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=28.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEEEecChh
Q psy13234 1092 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134 (1192)
Q Consensus 1092 dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIvIAHRLS 1134 (1192)
+.+|+|+||+-. |..+....+.+.+++-.++...|++|++++
T Consensus 108 ~~kvviIdead~-l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchhh-cCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 578999999853 555555556666654333455677888875
No 433
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.10 E-value=0.067 Score=54.63 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 31 i~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 999999999999999998753
No 434
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.08 E-value=0.068 Score=54.08 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 25 i~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999999985
No 435
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.04 E-value=0.06 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+|++||||||+.+.|.+.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 39999999999999999998865
No 436
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.04 E-value=0.078 Score=60.52 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.+.|+||||||||||...|+.-++
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 499999999999999999998764
No 437
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.03 E-value=0.057 Score=53.64 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 10 i~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 99999999999999998875
No 438
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.03 E-value=0.065 Score=59.00 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++|||++|+|||||++.|+|.-
T Consensus 27 I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 27 IVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHHCCC
Confidence 9999999999999999999864
No 439
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.03 E-value=0.07 Score=55.99 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
-.+.|+|++||||||+.+.|...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999998755
No 440
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.02 E-value=0.075 Score=54.84 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999998863
No 441
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.00 E-value=0.066 Score=62.38 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 965 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG 965 (1192)
..+.++|++||||||+++.|..-+ |-..+|.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 459999999999999999998744 4555554
No 442
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.99 E-value=0.076 Score=54.03 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 23 i~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999988753
No 443
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.99 E-value=0.21 Score=58.85 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=20.0
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhc
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlR 952 (1192)
++|+.+.|.|++|+||||++.-++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3455599999999999999866654
No 444
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.98 E-value=0.068 Score=58.11 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++++|++|+|||||++.|++--
T Consensus 42 I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 42 ILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999999743
No 445
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.97 E-value=0.064 Score=58.43 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++||++|+|||||++.|.|--
T Consensus 29 i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEeCCCCCHHHHHHHHHCCC
Confidence 9999999999999999999864
No 446
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.89 E-value=0.051 Score=54.23 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=8.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 11 i~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 99999999999999998864
No 447
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.88 E-value=0.072 Score=57.73 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.|++-
T Consensus 39 I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 39 VLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEECTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999999973
No 448
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.87 E-value=0.07 Score=55.36 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|||||||++.|.+-
T Consensus 33 i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 33 VNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 999999999999999888764
No 449
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.85 E-value=0.075 Score=55.22 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 37 i~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 99999999999999999986
No 450
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.83 E-value=0.076 Score=58.16 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=23.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 965 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG 965 (1192)
.+.|+|++||||||+.+.|...+ .|-..++.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~~ 34 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHhC---CCcEEecc
Confidence 48999999999999999998732 25555543
No 451
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.82 E-value=0.075 Score=54.73 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 10 i~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999988864
No 452
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.81 E-value=0.078 Score=53.81 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 24 i~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 99999999999999988764
No 453
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.81 E-value=0.073 Score=58.30 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++++|++|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 39999999999999999999864
No 454
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.71 E-value=0.084 Score=55.06 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=22.8
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhc
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlR 952 (1192)
.....|.. +.|.|+||+||||++..|..
T Consensus 11 ~v~v~G~g---vli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 11 FLVIDKMG---VLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEETTEE---EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCEE---EEEEcCCCCCHHHHHHHHHH
Confidence 34455666 99999999999999987775
No 455
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.69 E-value=0.074 Score=54.50 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 28 i~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999999863
No 456
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.50 E-value=0.082 Score=53.96 Aligned_cols=21 Identities=43% Similarity=0.493 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlR 952 (1192)
+++++|++|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 399999999999999999864
No 457
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.50 E-value=0.091 Score=57.55 Aligned_cols=30 Identities=37% Similarity=0.330 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDI 961 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sGsI 961 (1192)
++++||.+|+|||||++.|.|-..+..|.+
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred heEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 499999999999999999998766554543
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.46 E-value=0.083 Score=53.41 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999998854
No 459
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.45 E-value=0.15 Score=62.04 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDV 956 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp 956 (1192)
.+.|.|+.|+||||+++.+...+..
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3899999999999999999887653
No 460
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.33 E-value=0.095 Score=57.02 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++++|++|+|||||++.|.|-.
T Consensus 8 I~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 8 VALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 9999999999999999999843
No 461
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.32 E-value=0.099 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.+.++|++||||||+.+.|..-+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999998765
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.26 E-value=0.29 Score=58.33 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=56.1
Q ss_pred ccccCCCCCCChHHHHHHHHHHH--hcC---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEE
Q psy13234 1066 TQVGERGLKLSGGEKQRVAIART--LLK---------------APQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 1128 (1192)
Q Consensus 1066 T~VGErG~~LSGGQKQRIALARA--LLr---------------dP~ILLLDEATSALD~eTE~~Iq~aL~~l~~grTvIv 1128 (1192)
+........+||||+|-.-+|.+ ++. .=.+++|||| |-+|.+.-+...+.++++ |-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 55665667899999995433322 111 1157999999 999999999999999876 666777
Q ss_pred EecChhHHHhcCEEEEEe
Q psy13234 1129 VAHRLSTIIHADEILVMH 1146 (1192)
Q Consensus 1129 IAHRLSTI~~aDrIlVLe 1146 (1192)
+|=. .....+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7766 4456789988764
No 463
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.26 E-value=0.081 Score=52.04 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
+.|.||+|+|||++++.+.....
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 99999999999999999988654
No 464
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.26 E-value=0.089 Score=59.65 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.+.|+||||||||||.+.|..-+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999998653
No 465
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.22 E-value=0.1 Score=59.06 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
.++|+||||||||||...|+.-+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 38999999999999999998765
No 466
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.14 E-value=0.051 Score=56.14 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.|.+
T Consensus 14 i~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999998874
No 467
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.11 E-value=0.071 Score=53.71 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 25 i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 25 VLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999999854
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.00 E-value=0.095 Score=54.54 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++|+|++|+|||||++-+.+-
T Consensus 41 i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 41 FDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 999999999999999887764
No 469
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.80 E-value=0.42 Score=56.31 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.+.||+|+|||+|++++++-.
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 9999999999999999999754
No 470
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.77 E-value=0.095 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFYDV 956 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRlydp 956 (1192)
+.|+||+|+||||+++.+.+....
T Consensus 46 vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHHT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999886643
No 471
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.74 E-value=0.1 Score=53.70 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 33 i~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 33 CVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 99999999999999988774
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.72 E-value=0.056 Score=54.88 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=3.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 23 i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 23 VAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEC----------------
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 99999999999999998875
No 473
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.65 E-value=0.18 Score=63.89 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCce-EEECCeecCCCChHhhcccEEEEcCCCccccccHHHHHhccccC
Q psy13234 926 ESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGD-IFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARIN 1004 (1192)
Q Consensus 926 ~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGs-I~IDG~DI~~i~~~sLR~~Ig~VPQDp~LFnGTIreNI~~G~~~ 1004 (1192)
+.++...+.|+||+|+|||++++.|........+. |.+|..++
T Consensus 584 ~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~------------------------------------ 627 (854)
T 1qvr_A 584 PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY------------------------------------ 627 (854)
T ss_dssp SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC------------------------------------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc------------------------------------
Q ss_pred CCHHHHHHHhhhhhhhhhhccCCCCCchhhhhhcccHHHHHHHHHHcChHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q psy13234 1005 ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVA 1084 (1192)
Q Consensus 1005 asdEeV~eAa~~a~lh~~i~~~pd~~~~~~~~~~~sdeeI~~AL~~A~Lhd~I~~LP~GyDT~VGErG~~LSGGQKQRIA 1084 (1192)
........+..-|.|| .|.++.+.-
T Consensus 628 --------------------------------------------~~~~~~s~l~g~~~~~-----------~G~~~~g~l 652 (854)
T 1qvr_A 628 --------------------------------------------MEKHAVSRLIGAPPGY-----------VGYEEGGQL 652 (854)
T ss_dssp --------------------------------------------CSSGGGGGC-------------------------CH
T ss_pred --------------------------------------------cchhHHHHHcCCCCCC-----------cCccccchH
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----------cCCceEEEEecC
Q psy13234 1085 IARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-----------CASRTTIIVAHR 1132 (1192)
Q Consensus 1085 LARALLrdP~ILLLDEATSALD~eTE~~Iq~aL~~l-----------~~grTvIvIAHR 1132 (1192)
....--+.+.+|+|||+ -.++++.-..+.+.+.+- +++..+|+.|++
T Consensus 653 ~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 653 TEAVRRRPYSVILFDEI-EKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp HHHHHHCSSEEEEESSG-GGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred HHHHHhCCCeEEEEecc-cccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
No 474
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.59 E-value=0.11 Score=53.35 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 32 i~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhh
Confidence 99999999999999998875
No 475
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.50 E-value=0.12 Score=53.87 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 16 i~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEESCTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999998863
No 476
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.44 E-value=0.14 Score=55.14 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=23.4
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
.+|..+.+.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455599999999999999999987654
No 477
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.36 E-value=0.12 Score=59.37 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
++|+|++||||||+.++|.+.+
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 8999999999999999998853
No 478
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.24 E-value=0.093 Score=56.71 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
..++|.|+.||||||+++.|...+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3499999999999999999988763
No 479
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.16 E-value=0.13 Score=53.47 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
++++|++|+|||||++.+.+-
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999988763
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.02 E-value=0.13 Score=54.68 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 931 WYLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 931 e~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
..++|.|..||||||+++.|...++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3499999999999999999998764
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.01 E-value=0.13 Score=52.80 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 12 i~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 99999999999999998875
No 482
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.01 E-value=0.14 Score=62.27 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCc---eEEECC
Q psy13234 926 ESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESG---DIFIDN 965 (1192)
Q Consensus 926 ~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sG---sI~IDG 965 (1192)
.|+.|..+.|+|.|||||||+.+.|...+.. .| .+.+||
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~ 433 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLLLG 433 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcc-cCCceEEEECc
Confidence 4566667999999999999999999876542 13 456664
No 483
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.00 E-value=0.15 Score=60.33 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC----CCCCC--------ceEEECCeecCCCChHhh
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF----YDVES--------GDIFIDNQNIKTVSQASL 976 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl----ydp~s--------GsI~IDG~DI~~i~~~sL 976 (1192)
++|||++|+|||||++.|.+- ..+.. ..+.++|.++.=+|..-+
T Consensus 227 V~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~ 282 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGI 282 (462)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----
T ss_pred EEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcc
Confidence 999999999999999999874 12222 357778877655554333
No 484
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.92 E-value=0.15 Score=54.11 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDV 956 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp 956 (1192)
|..+.+.|++||||||+++.|...++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 344999999999999999999877654
No 485
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.81 E-value=0.13 Score=58.08 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+.|+||||||||||...|..-+
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 8999999999999999998765
No 486
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.66 E-value=0.17 Score=55.97 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDVESG 959 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp~sG 959 (1192)
++++||.+|+|||||++.|.|-.....|
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred eEEEEecCCCchHHHHHHHhcCceeecC
Confidence 4999999999999999999987644433
No 487
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.51 E-value=0.27 Score=57.40 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=30.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC----CCC--------ceEEECCeecCCCChHhhc
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYD----VES--------GDIFIDNQNIKTVSQASLR 977 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlyd----p~s--------GsI~IDG~DI~~i~~~sLR 977 (1192)
++++||++|+|||||++.|.+--. +.. +.+.++|..+.=+|..-.|
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~ 234 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 234 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcC
Confidence 499999999999999999997532 112 2445566555545544443
No 488
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=89.46 E-value=0.19 Score=55.98 Aligned_cols=23 Identities=43% Similarity=0.788 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY 954 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly 954 (1192)
+++++|++|+|||||++.+++-+
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 49999999999999999988753
No 489
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.41 E-value=0.24 Score=57.84 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC----C--------CCCceEEECCeec
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFY----D--------VESGDIFIDNQNI 968 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRly----d--------p~sGsI~IDG~DI 968 (1192)
+++|||++++|||||++-|.|-- + ...|.+.++|..+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEE
Confidence 49999999999999999998753 2 2245677777644
No 490
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.39 E-value=0.17 Score=62.16 Aligned_cols=41 Identities=27% Similarity=0.255 Sum_probs=30.0
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCeecC
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDV-ESGDIFIDNQNIK 969 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRlydp-~sGsI~IDG~DI~ 969 (1192)
+|..+.++|.+||||||+++.|...+.. .-..+.+||..++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 4556999999999999999999875521 1135677765554
No 491
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.33 E-value=0.17 Score=54.78 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRFYDV 956 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRlydp 956 (1192)
.+.+.|++||||||+++.|...+..
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4999999999999999999877654
No 492
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=89.23 E-value=0.18 Score=57.38 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
|++||.+++|||||++.|.+-
T Consensus 161 V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 161 VGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeCCCCCCHHHHHHHHHcC
Confidence 999999999999999998863
No 493
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=89.13 E-value=0.15 Score=60.54 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy13234 933 LLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlRl 953 (1192)
|+|||++|+|||||++.|.+-
T Consensus 236 V~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999999875
No 494
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.09 E-value=0.16 Score=54.76 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=19.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYD 955 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlyd 955 (1192)
|..+.+.|++||||||+++.|...++
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44599999999999999999987664
No 495
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.99 E-value=0.16 Score=60.98 Aligned_cols=38 Identities=5% Similarity=0.060 Sum_probs=28.6
Q ss_pred cccceEEEEcCCCCcHHHHHHHHhcCCCC-CCc--eEEECC
Q psy13234 928 QLVWYLLQVGQSGAGKSTIIRLLFRFYDV-ESG--DIFIDN 965 (1192)
Q Consensus 928 e~Ge~VAIVG~SGSGKSTLlrLLlRlydp-~sG--sI~IDG 965 (1192)
+.|..+.++|.|||||||+.++|.+-+.- +.| .-.+||
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDg 433 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEH 433 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCC
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecC
Confidence 44455999999999999999999988765 322 235666
No 496
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.94 E-value=0.19 Score=53.41 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13234 930 VWYLLQVGQSGAGKSTIIRLLFRFYDV 956 (1192)
Q Consensus 930 Ge~VAIVG~SGSGKSTLlrLLlRlydp 956 (1192)
|..+.+.|++||||||+++.|...++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345999999999999999999877653
No 497
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=88.91 E-value=0.18 Score=57.87 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q psy13234 932 YLLQVGQSGAGKSTIIRLLFRF 953 (1192)
Q Consensus 932 ~VAIVG~SGSGKSTLlrLLlRl 953 (1192)
.+++||+||+|||||++.|++-
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEcCCCCchHHHHHHHHhh
Confidence 3999999999999999999986
No 498
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.83 E-value=0.027 Score=71.18 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=34.8
Q ss_pred eeecCCcccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC
Q psy13234 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 970 (1192)
Q Consensus 922 ~~i~~Ge~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~IDG~DI~~ 970 (1192)
+.+.+++. +.++||+|+|||||++++.+... .+-+.+++.++.+
T Consensus 506 ~~~~~~~~---vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 506 FGMTPSKG---VLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp CCCCCCCC---CCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred cCCCCCce---eEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 44556666 99999999999999999999875 4567777777643
No 499
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=88.75 E-value=0.097 Score=62.18 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=26.0
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q psy13234 929 LVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIF 962 (1192)
Q Consensus 929 ~Ge~VAIVG~SGSGKSTLlrLLlRlydp~sGsI~ 962 (1192)
+|++++|+|+||+|||||++.|.+-.....|.|.
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 3455999999999999999999876554444443
No 500
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=88.39 E-value=0.082 Score=54.11 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy13234 933 LLQVGQSGAGKSTIIRLLFR 952 (1192)
Q Consensus 933 VAIVG~SGSGKSTLlrLLlR 952 (1192)
++++|++|+|||||++.+.+
T Consensus 33 i~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 33 CVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 99999999999999987753
Done!