RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13234
(1192 letters)
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 499 bits (1288), Expect = e-165
Identities = 240/560 (42%), Positives = 317/560 (56%), Gaps = 85/560 (15%)
Query: 630 RSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLF 689
R L+ V Q R + F HLH LSLR+HL R+TG + R + RGT I +L ++LF
Sbjct: 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILF 61
Query: 690 QIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNAL 749
I+PT+++I + V + W+ + T+ LYL+ +++V++WRT F+R MN AD+
Sbjct: 62 NILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDA 121
Query: 750 NTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGL 809
N ++IDSLLNFETVKY+G EEYE Y A++TY+ A + +SL+ LN Q I + GL
Sbjct: 122 NAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGL 181
Query: 810 LAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLVPLPK----- 864
+ V Q LTVGD + + QL +PLN+ R + +L + K
Sbjct: 182 RVMMTMSALGVEEGQ-LTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240
Query: 865 --------KTNAKE-----CRTISCIC-HLTKAVTRIVLKRIENKIEENMEEDQFGFRKG 910
+A ++ I R +L I F G
Sbjct: 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGI-----------SFTIPLG 289
Query: 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 970
K +A+ VG+SGAGKSTI+RLLFRFYDV SG I ID Q+I+
Sbjct: 290 K----------TVAI----------VGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329
Query: 971 VSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGY 1030
V+Q SLR+AIG+VPQDTVLFN++I +NI+Y R +A+ EEV AA +A IH+ I S P+GY
Sbjct: 330 VTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGY 389
Query: 1031 DTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLL 1090
DT VGERGLKLSGGEKQRVAIART+L
Sbjct: 390 DTG----------------------------------VGERGLKLSGGEKQRVAIARTIL 415
Query: 1091 KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEI 1150
K P I++LDEATSALDT TE+ IQ+AL V A RTT+++AHRLSTII ADEI+V+ G I
Sbjct: 416 KNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRI 475
Query: 1151 VERGRHEELLERNGVYASMW 1170
VERG HEELL G+YA MW
Sbjct: 476 VERGTHEELLAAGGLYAEMW 495
Score = 103 bits (260), Expect = 5e-23
Identities = 36/96 (37%), Positives = 54/96 (56%)
Query: 472 RSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLF 531
R L+ V Q R + F HLH LSLR+HL R+TG + R + RGT I +L ++LF
Sbjct: 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILF 61
Query: 532 QIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYL 567
I+PT+++I + V + W+ + T+ LYL
Sbjct: 62 NILPTLVEISLVAVILWRVYGWWFALTTLVTVILYL 97
Score = 51.6 bits (124), Expect = 2e-06
Identities = 47/238 (19%), Positives = 69/238 (28%), Gaps = 58/238 (24%)
Query: 366 WAGAAKKIKTLAPFLWPKKSALLKLQVII--CILLLIIARVINLFVPIYNRLLVIIIIII 423
A AP LWP ++L + + R L + L + I+
Sbjct: 241 DVEAEVSDAPDAPPLWP-----VRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIV 295
Query: 424 ILSGWETLNMNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYT 483
SG ++ + F+F G + + QQ
Sbjct: 296 GESG----------------AGKSTILRLLFRFYDVN----SGSITIDGQDIRDVTQQSL 335
Query: 484 TREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 543
R I I + + + G + + Q +P D
Sbjct: 336 RRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGA-AAEAAQIHDFIQSLPEGYD---- 390
Query: 544 IVFFVSTFSTWYGVIVFTTMALYLGKNTVGERGLKLSGGEKQRVAIALNSLVDKPLVF 601
T VGERGLKLSGGEKQRVAIA L + P++
Sbjct: 391 ------------------TG--------VGERGLKLSGGEKQRVAIARTILKNPPILI 422
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the mitochondria.
Although the specific function of ATM1 is unknown, its
disruption results in the accumulation of excess
mitochondrial iron, loss of mitochondrial cytochromes,
oxidative damage to mitochondrial DNA, and decreased
levels of cytosolic heme proteins. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 236
Score = 366 bits (943), Expect = e-119
Identities = 140/238 (58%), Positives = 169/238 (71%), Gaps = 34/238 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKSTI+RLLFRFYDV SG I ID Q+I+ V+ SLR+AIGVVPQDTVLFN++I
Sbjct: 33 VGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+NI+Y R +A++EEV EAA +A IH++I+ FPDGYDT
Sbjct: 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTI---------------------- 130
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
VGERGLKLSGGEKQRVAIAR +LK P I+LLDEATSALDT TER IQ+
Sbjct: 131 ------------VGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
AL V RTTI++AHRLSTI++AD+I+V+ G IVERG HEELL + G+YA MW Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236
Score = 52.6 bits (127), Expect = 3e-07
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVF 601
VGERGLKLSGGEKQRVAIA L + P++
Sbjct: 131 VGERGLKLSGGEKQRVAIARAILKNPPILL 160
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 325 bits (835), Expect = 9e-99
Identities = 180/569 (31%), Positives = 282/569 (49%), Gaps = 51/569 (8%)
Query: 608 IFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTG 667
+ L GVL ++S L + Q ++ +LF L L L + K+G
Sbjct: 50 ELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSG 109
Query: 668 EVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLVT 727
+++ + +++SNL++ VL + +IL ++ ++V S S +I+ + L +
Sbjct: 110 DLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSL-SWRLALILLLILPLLALV 168
Query: 728 SIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAE 787
++ K R++ A LN R ++SL +K +GAE+ E+K + +A + + A
Sbjct: 169 LSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRAN 228
Query: 788 YQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNW 847
+ S L L L+ + G + L V++ LTVG F+ Y+L+L P+
Sbjct: 229 LRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGS-LTVGALAAFILYLLRLLTPILQ 287
Query: 848 FDALTRYLEASLVPLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGF 907
+ L+ + + + V + E F +
Sbjct: 288 LGEVVSLLQRASA---------AAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSY 338
Query: 908 RKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN 967
K L+ I+ + + VG SG+GKST+I+LL R YD SG+I ID +
Sbjct: 339 PGKKPV------LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID 392
Query: 968 IKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFP 1027
I+ +S SLR+ IG+V QD +LF+ +I+ NI R +A++EE++EA A+ HE I + P
Sbjct: 393 IRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLP 452
Query: 1028 DGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIAR 1087
DGYDT VGERG+ LSGG++QR+AIAR
Sbjct: 453 DGYDTI----------------------------------VGERGVNLSGGQRQRLAIAR 478
Query: 1088 TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 1147
LL+ P I++LDEATSALDT+TE IQ AL ++ RTT+I+AHRLSTI +AD I+V+
Sbjct: 479 ALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDN 538
Query: 1148 GEIVERGRHEELLERNGVYASMWIQQNTK 1176
G IVERG HEELL + G+YA ++ Q
Sbjct: 539 GRIVERGTHEELLAKGGLYARLYQAQGGA 567
Score = 59.0 bits (143), Expect = 1e-08
Identities = 36/197 (18%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 371 KKIKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWET 430
++ L +L K +++ ILLL+++ +++L +P+ ++ ++
Sbjct: 2 SLLRRLLKYLKYK-------LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-------- 46
Query: 431 LNMNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIE 490
D + +L+ + GVL ++S L + Q ++ +
Sbjct: 47 -------DLGELLELLLLLLLLAL---------LGGVLRALQSYLGSRLGQKIVADLRRD 90
Query: 491 LFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVST 550
LF L L L + K+G+++ + +++SNL++ VL + +IL ++ ++V S
Sbjct: 91 LFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSL 150
Query: 551 FSTWYGVIVFTTMALYL 567
S +I+ + L
Sbjct: 151 -SWRLALILLLILPLLA 166
Score = 35.5 bits (82), Expect = 0.21
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLV 600
L G +T VGERG+ LSGG++QR+AIA L + P++
Sbjct: 449 ANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL 487
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron homeostasis
and one of four ABC transporters expressed in the
mitochondrial inner membrane, the other three being
MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1
(multidrug resistance-like protein 1) and MDL2 (multidrug
resistance-like protein 2) transporters are also included
in this CD. MDL1 is an ATP-dependent permease that acts
as a high-copy suppressor of ATM1 and is thought to have
a role in resistance to oxidative stress. Interestingly,
subfamily B is more closely related to the
carboxyl-terminal component of subfamily C than the two
halves of ABCC molecules are with one another.
Length = 238
Score = 294 bits (756), Expect = 5e-92
Identities = 113/238 (47%), Positives = 155/238 (65%), Gaps = 34/238 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG GKST++ LL RFYD SG+I +D +I+ ++ LR IG+V Q+ VLF+ +I
Sbjct: 35 VGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI+Y + +A++EEV+EAA A+IH F
Sbjct: 95 ENIRYGKPDATDEEVEEAAKKANIH----DF----------------------------- 121
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I+S PDGYDT VGERG +LSGG+KQR+AIAR LL+ P+I+LLDEATSALD ++E+ +Q
Sbjct: 122 -IMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
AL+R RTTI++AHRLSTI +AD I V+ G++VE+G H+EL+ + GVYA + Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238
Score = 43.3 bits (103), Expect = 4e-04
Identities = 15/19 (78%), Positives = 18/19 (94%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
VGERG +LSGG+KQR+AIA
Sbjct: 133 VGERGSQLSGGQKQRIAIA 151
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 234
Score = 294 bits (755), Expect = 6e-92
Identities = 118/235 (50%), Positives = 158/235 (67%), Gaps = 34/235 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKST++ L+ RFYDV+SG I ID +++ + ASLR+ IG+V QD LFN+++
Sbjct: 34 VGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVA 93
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y R A+ EEV+EAA +A NA HE
Sbjct: 94 ENIAYGRPGATREEVEEAARAA--------------------NA--------------HE 119
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I+ P+GYDT +GERG+KLSGG++QR+AIAR LLK P I++LDEATSALDT++ER +Q+
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170
AL R+ +RTT ++AHRLSTI +AD I+V+ G+IVERG HEELL + GVYA +
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234
Score = 43.4 bits (103), Expect = 3e-04
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPL 599
+GERG+KLSGG++QR+AIA L D P+
Sbjct: 132 IGERGVKLSGGQRQRIAIARALLKDPPI 159
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an
N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 278 bits (713), Expect = 3e-80
Identities = 157/551 (28%), Positives = 252/551 (45%), Gaps = 89/551 (16%)
Query: 644 EIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIV 703
E+ FRHL L L + R GE++ + + + ++ I+ I+D++ A++
Sbjct: 228 ELSGRFFRHLLRLPLSYFEKRSVGEIISRVR----ELEQIREFLTGSILTLIIDLLFALI 283
Query: 704 FFV--STFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMN--LADNA-LNTRSIDSLL 758
F +S +IV + L ++ +++ +RK + ++A + ++++
Sbjct: 284 FLAVMFLYSWKLTLIVLAAIPLNVLITLIFQP---LLRRKTRKLIEESAEQQSFLVETIK 340
Query: 759 NFETVKYYGAEEYEIKEYGKAIQTYQVAEY---QNSLSLVFLNSLQNLIITGGLLA-GSL 814
ETVK AE ++ + + + +L L + SL + + +L G++
Sbjct: 341 GIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAI 400
Query: 815 LCVHEVVNNQTLTVGDYTLFVSYILQLYV--PL-NWFDALTRYLEA--------SLVPLP 863
L V LT+G L +L Y P+ T + +A ++ P
Sbjct: 401 L-----VLEGELTLG--QLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTP 453
Query: 864 KKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMI 923
+ + I + + FR G L +
Sbjct: 454 PEQEGDKTLIHLPKLQ-----GEIEFENVS-------------FRYGPDDPPV---LEDL 492
Query: 924 ALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 983
+LE + VG+SG+GKST+++LL Y + G I +D ++ + ASLR+ +G V
Sbjct: 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV 552
Query: 984 PQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE 1043
QD LF+ SI+ NI + A++EE
Sbjct: 553 LQDPFLFSGSIRENI--------------------------AL--------GNPEATDEE 578
Query: 1044 VKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103
+ EAA A HE I + P GYDT VGE G LSGG++QR+A+AR LL P+I+LLDEATS
Sbjct: 579 IIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATS 638
Query: 1104 ALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERN 1163
ALD +TE I L ++ RT II+AHRLSTI AD I+V+ G+IVE+G HEELL +
Sbjct: 639 ALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
Query: 1164 GVYASMWIQQN 1174
G+YA ++ QQ
Sbjct: 699 GLYARLYQQQE 709
Score = 49.9 bits (120), Expect = 7e-06
Identities = 33/193 (17%), Positives = 75/193 (38%), Gaps = 33/193 (17%)
Query: 376 LAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNS 435
P L+ + L +L ++ +++ L P++++ ++I ++ + TL
Sbjct: 145 FIPLLFKYRRLLF-----EVLLASLLLQLLALATPLFSQ--IVIDKVLPDASRSTLT--- 194
Query: 436 LVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHL 495
+ I + L +L +R+ L + + E+ FRHL
Sbjct: 195 -----------VLAIGLLLAAL------FEALLRLLRTYLIAHLGKRLDLELSGRFFRHL 237
Query: 496 HGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFV--STFST 553
L L + R GE++ + + + ++ I+ I+D++ A++F +S
Sbjct: 238 LRLPLSYFEKRSVGEIISRVR----ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSW 293
Query: 554 WYGVIVFTTMALY 566
+IV + L
Sbjct: 294 KLTLIVLAAIPLN 306
Score = 39.1 bits (92), Expect = 0.016
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 562 TMALYLGKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
L +G +T VGE G LSGG++QR+A+A +L+ KP + D
Sbjct: 592 IENLPMGYDTPVGEGGANLSGGQRQRLALA-RALLSKPKILLLD 634
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family and
is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 256 bits (657), Expect = 2e-78
Identities = 108/229 (47%), Positives = 146/229 (63%), Gaps = 34/229 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +GAGK+T+I LL RFYD + G I ID +I+ +S+ SLR IGVV QDT LF+ +I
Sbjct: 35 VGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM 94
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI+ R NA++EEV EAA KEA H+
Sbjct: 95 ENIRLGRPNATDEEVIEAA------------------------------KEAG----AHD 120
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I+ P+GYDT +GE G LS GE+Q +AIAR +L+ P+I++LDEATS +DT+TE+ IQ
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNG 1164
AL ++ RT+II+AHRLSTI +AD+ILV+ G+I+E G H+ELL + G
Sbjct: 181 ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
Score = 30.7 bits (70), Expect = 3.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GE G LS GE+Q +AIA
Sbjct: 133 LGENGGNLSQGERQLLAIA 151
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide chain
transporter in the ATP-binding cassette (ABC) transporter
family, MsbA, which exports lipid A. It may also act in
multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members of
this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 261 bits (670), Expect = 8e-76
Identities = 155/561 (27%), Positives = 262/561 (46%), Gaps = 75/561 (13%)
Query: 633 LWIGVQQYTT------------REIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSI 680
+ G+ + + R+I + +F L GL + + + TG +L +R T
Sbjct: 65 VLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLL---SRITFDS 121
Query: 681 SNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYL-VTSIVVTEWRTKFQ 739
+ + I + + + I F+ +Y + + + L V SI++ + +
Sbjct: 122 EQVASAATDAFIVLVRETLTVIGLFIVLL--YYSWQLTLIVVVMLPVLSILMRRVSKRLR 179
Query: 740 R---KMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVF 796
R ++ + + T + ++L + VK +G + YE + + + + + +
Sbjct: 180 RISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239
Query: 797 LNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLE 856
+ + LI + L + + + LT GD+T F++ ++ L PL +LT
Sbjct: 240 SSPITQLIASLALAVVLFIALFQAQAGS-LTAGDFTAFITAMIALIRPLK---SLTN--- 292
Query: 857 ASLVPLPKKTNAKECRTISCICHLTKAVT--RIVLKRIENKIE-ENMEEDQFGFRKGKGT 913
V P + ++ + ++R +E N+ FR
Sbjct: 293 ---VNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVT-----FRYPGRD 344
Query: 914 RDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973
R A+ + ++ + V VG+SG+GKST++ L+ RFY+ +SG I +D ++ +
Sbjct: 345 RPALDSISLVIEPGETVAL---VGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401
Query: 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQ 1033
ASLR+ + +V QD VLFN++I NI Y R + D
Sbjct: 402 ASLRRQVALVSQDVVLFNDTIANNIAYGR------------------------TEQAD-- 435
Query: 1034 YARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAP 1093
E++ A +A + + P G DT +GE G+ LSGG++QR+AIAR LLK
Sbjct: 436 -------RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA 488
Query: 1094 QIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER 1153
I++LDEATSALD ++ER +Q+AL R+ RTT+++AHRLSTI AD I+VM G IVER
Sbjct: 489 PILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVER 548
Query: 1154 GRHEELLERNGVYASMWIQQN 1174
G H ELL RNG+YA + Q
Sbjct: 549 GTHNELLARNGLYAQLHNMQF 569
Score = 37.4 bits (87), Expect = 0.048
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPL 599
+GE G+ LSGG++QR+AIA L D P+
Sbjct: 463 IGENGVLLSGGQRQRLAIARALLKDAPI 490
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 242 bits (619), Expect = 1e-68
Identities = 112/234 (47%), Positives = 148/234 (63%), Gaps = 34/234 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +GAGKST+I LL R +D +SG I ID +I+TV++ASLR+ I VV QD LFN SI+
Sbjct: 367 VGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE 426
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI+ R PD A++EE++ AA A H+
Sbjct: 427 DNIRVGR------------------------PD----------ATDEEMRAAAERAQAHD 452
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I PDGYDT VGERG +LSGGE+QR+AIAR LLK P I++LDEATSALD +TE +++
Sbjct: 453 FIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKA 512
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
AL+ + RTT I+AHRLST+ +AD ILV G +VE G +EL+ R G +A++
Sbjct: 513 ALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL 566
Score = 43.4 bits (103), Expect = 7e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPL 599
VGERG +LSGGE+QR+AIA L D P+
Sbjct: 465 VGERGRQLSGGERQRLAIARALLKDPPI 492
Score = 36.9 bits (86), Expect = 0.082
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 27/133 (20%)
Query: 647 IELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNL-LNYV---------LFQIIPTIL 696
E F + L L WH R +G L + RGTD++ L L ++ L ++P L
Sbjct: 93 TEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLAL 152
Query: 697 --DIVIAIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTK-FQRKMNLADNALNTRS 753
+ +++V V IV+T L+T++V+ +TK Q + + L
Sbjct: 153 FMNWRLSLVLVVL-------GIVYT-----LITTLVMR--KTKDGQAAVEEHYHDLFAHV 198
Query: 754 IDSLLNFETVKYY 766
D++ N V+ Y
Sbjct: 199 SDAIGNVSVVQSY 211
Score = 35.3 bits (82), Expect = 0.19
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 19/88 (21%)
Query: 489 IELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNL-LNYV---------LFQIIPTIL 538
E F + L L WH R +G L + RGTD++ L L ++ L ++P L
Sbjct: 93 TEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLAL 152
Query: 539 --DIVIAIVFFVSTFSTWYGVIVFTTMA 564
+ +++V V IV+T +
Sbjct: 153 FMNWRLSLVLVVL-------GIVYTLIT 173
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B,
subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a Sec-independent
fashion across both membranes of E. coli. The hemolysin A
(HlyA) transport machinery is composed of the ATP-binding
cassette (ABC) transporter HlyB located in the inner
membrane, hemolysin D (HlyD), also anchored in the inner
membrane, and TolC, which resides in the outer membrane.
HlyD apparently forms a continuous channel that bridges
the entire periplasm, interacting with TolC and HlyB.
This arrangement prevents the appearance of periplasmic
intermediates of HlyA during substrate transport. Little
is known about the molecular details of HlyA transport,
but it is evident that ATP-hydrolysis by the
ABC-transporter HlyB is a necessary source of energy.
Length = 237
Score = 228 bits (584), Expect = 3e-68
Identities = 104/238 (43%), Positives = 142/238 (59%), Gaps = 34/238 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG+SG+GKST+ +L+ RFY E+G + +D ++ A LR+ +GVV Q+ VLFN SI+
Sbjct: 34 VGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A S E V EAA A H+ F
Sbjct: 94 DNIALADPGMSMERVIEAAKLAGAHD----F----------------------------- 120
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I P+GYDT VGE+G LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I
Sbjct: 121 -ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
++ +CA RT II+AHRLST+ +AD I+VM G IVE+G H+ELL NG+YA ++ Q
Sbjct: 180 NMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237
Score = 39.4 bits (92), Expect = 0.006
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
L G +T VGE+G LSGG++QR+AIA +L+ P + +D
Sbjct: 122 SELPEGYDTIVGEQGAGLSGGQRQRIAIA-RALIHNPRILIFD 163
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 239 bits (613), Expect = 4e-68
Identities = 106/232 (45%), Positives = 146/232 (62%), Gaps = 34/232 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SGAGKST+ +LL RFYD +SG I +D +++ + A LR + +VPQD VLF S+
Sbjct: 372 VGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVM 431
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI+Y R PD A++EEV+ AA +A HE
Sbjct: 432 ENIRYGR------------------------PD----------ATDEEVEAAARAAHAHE 457
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I + P+GYDT +GERG+ LSGG++QR+AIAR +LK I+LLDEATSALD ++E+ +Q
Sbjct: 458 FISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQ 517
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYA 1167
AL + RTT+I+AHRL+T++ AD I+VM G IV +G H EL+ + G+YA
Sbjct: 518 ALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYA 569
Score = 43.2 bits (102), Expect = 7e-04
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPL 599
+GERG+ LSGG++QR+AIA L D P+
Sbjct: 470 LGERGVTLSGGQRQRIAIARAILKDAPI 497
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 230 bits (588), Expect = 1e-64
Identities = 108/232 (46%), Positives = 149/232 (64%), Gaps = 33/232 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG+SG+GKSTI LL RFYD++ G+I +D +++ + ASLR + +V Q+ LFN++I
Sbjct: 375 VGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI YAR QY+R E+++EAA A +
Sbjct: 435 NNIAYAR----------------------------TEQYSR-----EQIEEAARMAYAMD 461
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I +G DT +GE G+ LSGG++QR+AIAR LL+ I++LDEATSALDT++ER IQ+
Sbjct: 462 FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYA 1167
AL+ + +RT++++AHRLSTI ADEILV+ GEIVERG H ELL +NGVYA
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYA 573
Score = 36.2 bits (84), Expect = 0.12
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 568 GKNTV-GERGLKLSGGEKQRVAIALNSLVDKPL 599
G +TV GE G+ LSGG++QR+AIA L D P+
Sbjct: 469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 220 bits (563), Expect = 2e-61
Identities = 138/585 (23%), Positives = 233/585 (39%), Gaps = 97/585 (16%)
Query: 621 GGMGVLNNVRSLL-WIGVQ------QYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVM 673
+ + +R+ L W+ + + + L L + + G +
Sbjct: 44 ILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLA 103
Query: 674 NRGTDSISNLLNYVLFQ-----IIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLVTS 728
G + + L Q I+P + I+IAI FF W ++ A +
Sbjct: 104 LEGIEQLEPYYARYLPQMFLSAIVPLL--ILIAIFFF-----NWAAALILLITAPLIPLF 156
Query: 729 IVVTEWRTKFQRKMNLAD-NALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAE 787
+++ K + + L+ +D L ET++ +G E + K + ++
Sbjct: 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFR-KA 215
Query: 788 YQNSLSLVFLNSLQ-NLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLN 846
+ L + FL+S + ++ ++ LT+ + + + PL
Sbjct: 216 TMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLR 275
Query: 847 WF--------------DALTRYLEASLVPLPKKTNAKECRTISCICHLTKAVTRIVLKRI 892
D L LE+ + A+
Sbjct: 276 DLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVAN-------------------- 315
Query: 893 ENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFR 952
E IE ++E FR G A+ L + QL VG SGAGKST++ LL
Sbjct: 316 EPPIEISLEN--LSFRYPDGKP-ALSDLNLTIKAGQLTAL---VGASGAGKSTLLNLLLG 369
Query: 953 FYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKE 1012
F G+I ++ +++ +S + R+ I V Q+ LF +I+ NI AR +AS+EE+
Sbjct: 370 FLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIA 429
Query: 1013 AATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERG 1072
A A + E + PDG DT +GE G
Sbjct: 430 ALDQAGLLE-----------------------------------FVPKPDGLDTVIGEGG 454
Query: 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132
LSGG+ QR+A+AR LL ++LLDE T+ LD +TE+ I AL + +T +++ HR
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514
Query: 1133 LSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTKQ 1177
L AD I+V+ G +VE+G HEEL E+ G+YA++ QQ ++
Sbjct: 515 LEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEGRR 559
Score = 34.2 bits (79), Expect = 0.44
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GE G LSGG+ QR+A+A
Sbjct: 450 IGEGGAGLSGGQAQRLALA 468
Score = 31.5 bits (72), Expect = 3.5
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 463 GGMGVLNNVRSLL-WIGVQ------QYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVM 515
+ + +R+ L W+ + + + L L + + G +
Sbjct: 44 ILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLA 103
Query: 516 NRGTDSISNLLNYVLFQ-----IIPTILDIVIAIVFF 547
G + + L Q I+P + I+IAI FF
Sbjct: 104 LEGIEQLEPYYARYLPQMFLSAIVPLL--ILIAIFFF 138
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter,
HlyB family. Type I protein secretion is a system in
some Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are not
cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion [Protein fate, Protein and peptide secretion
and trafficking].
Length = 694
Score = 216 bits (551), Expect = 5e-59
Identities = 99/238 (41%), Positives = 134/238 (56%), Gaps = 34/238 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKST+ +LL R Y + G + +D ++ A LR+ +GVV Q+ VLF+ SI+
Sbjct: 489 VGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A E V IH AA A H+
Sbjct: 549 DNIALCNPGAPFEHV--------IH--------------------------AAKLAGAHD 574
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I P GY+T+VGE+G LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I
Sbjct: 575 FISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
+ +C RT II+AHRLST+ D I+V+ G+I E GRHEELL G+YA +W QQ
Sbjct: 635 NMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQ 692
Score = 43.2 bits (102), Expect = 8e-04
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 20/180 (11%)
Query: 593 SLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIEL--- 649
++DK LV R L + L + + L + + T I++EL
Sbjct: 164 VVIDKVLVHRGLSTLSVLALAML------AVAIFEPALGGLRTYLFAHLTSRIDVELGAR 217
Query: 650 -FRHLHGLSLRWHLSRKTGE-VLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVS 707
+RHL GL L + SR+ G+ V RV R + I N L + +LD++ +VF
Sbjct: 218 LYRHLLGLPLGYFESRRVGDTVARV--RELEQIRNFLTG---SALTVVLDLLFVVVFLAV 272
Query: 708 TF---STWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVK 764
F T GV++ + + L++ V R + + K + A + ++S+ ET+K
Sbjct: 273 MFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAA-TSFLVESVTGIETIK 331
Score = 37.8 bits (88), Expect = 0.035
Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 47/266 (17%)
Query: 408 FVPI---YNRLLVIIIIIIILSGWETLNMNSLVDKPLVFR--WDYVLIFVGFKFLQ--GG 460
F+P Y + +++I + L + +LV PL+F+ D VL+ G L
Sbjct: 130 FIPAIIRYRKQFREVLLISLA-----LQLFALV-TPLLFQVVIDKVLVHRGLSTLSVLAL 183
Query: 461 GTGGMGVLNNVRSLLWIGVQQYTTREIEIEL----FRHLHGLSLRWHLSRKTGE-VLRVM 515
+ + L + + T I++EL +RHL GL L + SR+ G+ V RV
Sbjct: 184 AMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV- 242
Query: 516 NRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTF---STWYGVIVFTTMALYLGKNTV 572
R + I N L + +LD++ +VF F T GV++ + + L V
Sbjct: 243 -RELEQIRNFLTG---SALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFV 298
Query: 573 GERGLKLSGGEKQRVAIALNSLVDK--------------PLVFRWDYVL---IFVGFKFL 615
G K + +R A A + LV+ RWD L + F+
Sbjct: 299 GPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVT 358
Query: 616 QGGGTGGMGV--LNNVRS--LLWIGV 637
G G + + + LLW G
Sbjct: 359 NLGNIAGQAIELIQKLTFAILLWFGA 384
Score = 35.9 bits (83), Expect = 0.17
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 4/37 (10%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIALNSLVDKP--LVF 601
G NT VGE+G LSGG++QR+AIA +LV P L+F
Sbjct: 582 GYNTEVGEKGANLSGGQRQRIAIA-RALVGNPRILIF 617
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter,
peptidase/ATP-binding protein. This protein describes a
multidomain ABC transporter subunit that is one of three
protein families associated with some regularity with a
distinctive family of putative bacteriocins. It includes
a bacteriocin-processing peptidase domain at the
N-terminus. Model TIGR03793 describes a conserved
propeptide region for this bacteriocin family, unusual
because it shows obvious homology a region of the enzyme
nitrile hydratase up to the classic Gly-Gly cleavage
motif. This family is therefore predicted to be a subunit
of a bacteriocin processing and export system
characteristic to this system that we designate NHLM,
Nitrile Hydratase Leader Microcin [Transport and binding
proteins, Amino acids, peptides and amines, Cellular
processes, Biosynthesis of natural products].
Length = 710
Score = 212 bits (543), Expect = 9e-58
Identities = 158/576 (27%), Positives = 248/576 (43%), Gaps = 98/576 (17%)
Query: 622 GMGVLNNVRSLL-WIGVQQYTTREIEIEL--------FRHLHGLSLRWHLSRKTGEVL-R 671
GMG+ ++ +L W+ Q Y R ++I+L H+ L +R+ R G++ R
Sbjct: 199 GMGLTALLQGVLTWL--QLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASR 256
Query: 672 VMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTF--STWYGVIVFTTMALYLVTSI 729
V + D ++ L+ Q+ T LD V+ + + + +I A+ ++
Sbjct: 257 V--QLNDQVAEFLSG---QLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQ 311
Query: 730 VVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAE-EYEIKEYG---KAIQTYQV 785
+V+ R R++ L +I L + ET+K G E ++ + G K + Q
Sbjct: 312 LVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQE 371
Query: 786 AEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPL 845
+ V L +L L+ G L V+ Q LT+G F S + P+
Sbjct: 372 LGVLTQILGVLPTLLTSLNSALILVVGGLR----VMEGQ-LTIGMLVAFQSLMSSFLEPV 426
Query: 846 N---WFDALTRYLEASLVPLPKKTNA-------KECRTISCICHLTKAVTRIVLKRIE-- 893
N F + LE L L +E + + + L+ I
Sbjct: 427 NNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFG 486
Query: 894 -NKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFR 952
+ +E + E+ F G R +AL VG SG+GKSTI +L+
Sbjct: 487 YSPLEPPLIEN-FSLTLQPGQR--------VAL----------VGGSGSGKSTIAKLVAG 527
Query: 953 FYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKE 1012
Y SG+I D + + + L ++ +V QD LF +++ N+
Sbjct: 528 LYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTL------------ 575
Query: 1013 AATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERG 1072
+D + ++ A A IH+ I S P GYD ++ E G
Sbjct: 576 -----------------WDP-----TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613
Query: 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-NRVCASRTTIIVAH 1131
LSGG++QR+ IAR L++ P I++LDEATSALD +TE+ I L R C T IIVAH
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGC---TCIIVAH 670
Query: 1132 RLSTIIHADEILVMHAGEIVERGRHEELLERNGVYA 1167
RLSTI DEI+V+ G++V+RG HEEL G YA
Sbjct: 671 RLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYA 706
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants in
this loci have lost functions of virulence and motility.
It is unclear as to how virulence and osmoadaptaion are
related [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 585
Score = 198 bits (504), Expect = 9e-54
Identities = 150/539 (27%), Positives = 242/539 (44%), Gaps = 83/539 (15%)
Query: 648 ELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVS 707
E F + + L WH R T L + R T+++ L + + L +A+ +
Sbjct: 94 EAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLW----LEFMRQHLATFVALFLLIP 149
Query: 708 T---FSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVK 764
T +++ LY++ + +V + Q + + + DS+ N V
Sbjct: 150 TAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVH 209
Query: 765 YYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQ 824
Y E E + A+Y + L + T ++ ++ V+ +
Sbjct: 210 SYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGE 269
Query: 825 TLTVGDYTLFVSYILQLYVPLNWFDALTRY-------------LEASLVPLPKKTNAKEC 871
L+VG+ F+ + L L+ LE S+ + +A E
Sbjct: 270 -LSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPE- 327
Query: 872 RTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGK-GTRDAIGCLRMIALESQLV 930
L ++ +E F F G D ++ E++
Sbjct: 328 -----------------LPNVKGAVE--FRHITFEFANSSQGVFD-------VSFEAKAG 361
Query: 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990
+ VG +GAGK+T+I LL R YD G I ID +I TV++ SLR++I V QD LF
Sbjct: 362 QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF 421
Query: 991 NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
N SI+ NI+ R A++EEV EAA +A H+ IL R N
Sbjct: 422 NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILK----------RSN------------ 459
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
GYDT VGERG +LSGGE+QR+AIAR +LK I++LDEATSALD +TE
Sbjct: 460 ------------GYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507
Query: 1111 RNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
+++A++ + +RTT I+AHRLST+ +AD +L + G ++E+G +EL++++G + +
Sbjct: 508 ARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKL 566
Score = 39.1 bits (91), Expect = 0.013
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLV 600
VGERG +LSGGE+QR+AIA L + P++
Sbjct: 465 VGERGNRLSGGERQRLAIARAILKNAPIL 493
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 197 bits (503), Expect = 1e-53
Identities = 122/539 (22%), Positives = 224/539 (41%), Gaps = 70/539 (12%)
Query: 642 TREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 701
+ + LF L LS L ++G++L + D++ NL V+ + L ++
Sbjct: 90 LSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAV-VALVLIAV 148
Query: 702 IVFFVSTFSTWYGVIVFTTM-ALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNF 760
+ +S FS +++ + L L+ + KF + AL ++ D +
Sbjct: 149 VTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQ 208
Query: 761 ETVKYYGAEEYEIKEYGKAIQTYQVAEYQNS----LSLVFLNSLQNLIITGGLLAGSLLC 816
+ +GAE+ ++ A+ + + LS L + L++ G LL +
Sbjct: 209 AELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQV 268
Query: 817 VHEVVNNQTLTVGDYTLFVSYILQLYVPLNW--FDALTRYLEAS--LVPLPKKTNAKECR 872
+ + +F + L+ + PL F L + + ++ L + +
Sbjct: 269 GAGALAQPGAALALLVIFAA--LEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP 326
Query: 873 TISCICHLTKAVTRIVLKRIENKIEENMEE--DQFGFRKGKGTRDAIGCLRMIALESQLV 930
+ L+ + + F +G + AI
Sbjct: 327 DEQ----TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAI------------- 369
Query: 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990
+G+SG+GKST+++LL +D + G I ++ I ++ + +LR+ I V+ Q LF
Sbjct: 370 -----LGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424
Query: 991 NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
+ +++ N++ A +AS+EE+ A + + + S PDG +T
Sbjct: 425 SGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTW----------------- 467
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+GE G +LSGGE++R+A+AR LL + LLDE T LD TE
Sbjct: 468 -----------------LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510
Query: 1111 RNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
R + + L +T ++V HRL + D I+V+ G+I+E G H ELL NG Y +
Sbjct: 511 RQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRL 569
Score = 35.4 bits (82), Expect = 0.18
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLV 600
+ G NT +GE G +LSGGE++R+A+A L D PL
Sbjct: 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496
Score = 30.4 bits (69), Expect = 7.4
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 484 TREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 543
+ + LF L LS L ++G++L + D++ NL V+ + L ++
Sbjct: 90 LSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAV-VALVLIAV 148
Query: 544 IVFFVSTFSTWYGVIVFTTMALYL 567
+ +S FS +++ + L L
Sbjct: 149 VTIGLSFFSIPLALLLGLILLLLL 172
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug
resistance-associated protein. The ABC subfamily C is
also known as MRP (multidrug resistance-associated
protein). Some of the MRP members have five additional
transmembrane segments in their N-terminus, but the
function of these additional membrane-spanning domains is
not clear. The MRP was found in the multidrug-resistance
lung cancer cell in which p-glycoprotein was not
overexpressed. MRP exports glutathione by drug
stimulation, as well as, certain substrates in conjugated
forms with anions, such as glutathione, glucuronate, and
sulfate.
Length = 221
Score = 183 bits (468), Expect = 1e-52
Identities = 73/219 (33%), Positives = 113/219 (51%), Gaps = 35/219 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++G+GKS+++ LFR ++ SG I ID +I + LR I ++PQD VLF+ +I+
Sbjct: 36 VGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIR 95
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ D S+EE+ +A + E
Sbjct: 96 SNL-------------------DPFGE----------------YSDEELWQALERVGLKE 120
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+ S P G DT V E G LS G++Q + +AR LL+ +I++LDEAT+++D +T+ IQ
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 1154
+ T + +AHRL TII +D ILV+ G +VE
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFD 219
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 193 bits (491), Expect = 4e-52
Identities = 94/250 (37%), Positives = 138/250 (55%), Gaps = 37/250 (14%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996
G +G+GKST++ L+ R +DV GDI + + + S R + VV Q LF++++
Sbjct: 348 GPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVAN 407
Query: 997 NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056
NI R PD A+++E++ A A +H+
Sbjct: 408 NIALGR------------------------PD----------ATQQEIEHVARLASVHDD 433
Query: 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA 1116
IL P GYDT+VGERG+ LSGG+KQR++IAR LL +I++LD+A SA+D +TE I
Sbjct: 434 ILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN 493
Query: 1117 LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTK 1176
L + RT II AHRLS + A EILVM G I +RG H++L +++G Y M+ Q
Sbjct: 494 LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ--- 550
Query: 1177 QSEPSSDESP 1186
Q E + D++P
Sbjct: 551 QLEAALDDAP 560
Score = 40.1 bits (94), Expect = 0.007
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVD 596
VGERG+ LSGG+KQR++IA L++
Sbjct: 445 VGERGVMLSGGQKQRISIARALLLN 469
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many non-lantibiotic
bacteriocins of lactic acid bacteria are produced as
precursors which have N-terminal leader peptides that
share similarities in amino acid sequence and contain a
conserved processing site of two glycine residues in
positions -1 and -2. A dedicated ATP-binding cassette
(ABC) transporter is responsible for the proteolytic
cleavage of the leader peptides and subsequent
translocation of the bacteriocins across the cytoplasmic
membrane.
Length = 220
Score = 178 bits (453), Expect = 8e-51
Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 34/219 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G+ G+GKST+++LL Y SG + +D +I+ + A LR+ IG VPQD LF +++
Sbjct: 36 IGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLR 95
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A +E + AA A + T + +
Sbjct: 96 DNITLGAPLADDERILRAAELAGV------------TDFVNKH----------------- 126
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
P+G D Q+GERG LSGG++Q VA+AR LL P I+LLDE TSA+D +E ++
Sbjct: 127 -----PNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKE 181
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 1154
L ++ +T II+ HR S + D I+VM +G IV G
Sbjct: 182 RLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
Score = 33.7 bits (78), Expect = 0.44
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GERG LSGG++Q VA+A
Sbjct: 134 IGERGRGLSGGQRQAVALA 152
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 171 bits (434), Expect = 3e-48
Identities = 88/215 (40%), Positives = 120/215 (55%), Gaps = 34/215 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKST++ LL FY + G + +D + I L + +V Q+ VLF S++
Sbjct: 46 VGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQ 105
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y + S E VKEAA A H SF
Sbjct: 106 DNIAYGLQSCSFECVKEAAQKAHAH----SF----------------------------- 132
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I GYDT+VGE+G +LSGG+KQRVAIAR L++ PQ+++LDEATSALD ++E+ +Q
Sbjct: 133 -ISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEI 1150
AL RT +++AHRLST+ AD+ILV+ G I
Sbjct: 192 ALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
Score = 40.1 bits (94), Expect = 0.003
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
VGE+G +LSGG+KQRVAIA +L+ P V D
Sbjct: 144 VGEKGSQLSGGQKQRVAIA-RALIRNPQVLILD 175
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for killing
or inhibiting the closely related species or even
different strains of the same species. Bacteriocins are
usually encoded by bacterial plasmids. Bacteriocins are
named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 183 bits (466), Expect = 6e-48
Identities = 153/566 (27%), Positives = 266/566 (46%), Gaps = 92/566 (16%)
Query: 625 VLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLL 684
+L+ ++ L + Q + +I + +HL L + + +R+TGE++ +R TD+ S+++
Sbjct: 211 ILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIV---SRFTDA-SSII 266
Query: 685 NYVLFQIIPTILD--IVIAIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKM 742
+ + I+ LD I++ + F+ + ++ ++ +Y V I+ K
Sbjct: 267 DALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDA 326
Query: 743 NLADNALNTRSIDSLLNFETVKYYGAE-------EYEIKEYGKAIQTYQVAEYQNSLSLV 795
A+ LN+ I+ L ET+K +E + E +Y YQ A+
Sbjct: 327 MQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386
Query: 796 FLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGD---YTLFVSYILQLYVPLNWFDALT 852
+ N++I L G+ L V LT+G + +SY L PL L
Sbjct: 387 VTKLILNVVI---LWTGAYL-----VMRGKLTLGQLITFNALLSYFLT---PLENIINLQ 435
Query: 853 RYLEASLVP---------LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEED 903
L+A+ V + + K+ RT N + ++ +
Sbjct: 436 PKLQAARVANNRLNEVYLVDSEFINKKKRTEL------------------NNLNGDIVIN 477
Query: 904 QFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFI 963
+ G G+ L I+L ++ VG SG+GKST+ +LL F+ SG+I +
Sbjct: 478 DVSYSYGYGSN----ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 964 DNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERI 1023
+ ++K + + +LRQ I +PQ+ +F+ SI N+ +
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENL------------------------L 569
Query: 1024 LSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRV 1083
L A+ N S++E+ A A+I + I + P GY T++ E G +SGG+KQR+
Sbjct: 570 LG---------AKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620
Query: 1084 AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEIL 1143
A+AR LL ++++LDE+TS LDT TE+ I + L + +T I VAHRLS +D+I+
Sbjct: 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKII 679
Query: 1144 VMHAGEIVERGRHEELLERNGVYASM 1169
V+ G+I+E+G H+ELL+RNG YAS+
Sbjct: 680 VLDHGKIIEQGSHDELLDRNGFYASL 705
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 179 bits (456), Expect = 2e-47
Identities = 91/254 (35%), Positives = 138/254 (54%), Gaps = 35/254 (13%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +G+GKST+ LL +Y + G+I +D + + ++S + LRQ + +V QD V+ ++
Sbjct: 373 VGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL 432
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ R DI SEE+V +A + + E
Sbjct: 433 ANVTLGR---------------DI--------------------SEEQVWQALETVQLAE 457
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
S PDG T +GE+G LS G+KQ +A+AR L++ PQI++LDEAT+ +D+ TE+ IQ
Sbjct: 458 LARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ 517
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175
AL V T +++AHRLSTI+ AD ILV+H G+ VE+G H++LL G Y M+ Q
Sbjct: 518 ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLA 577
Query: 1176 KQSEPSSDESPPSS 1189
+ +S S
Sbjct: 578 GEELAASVREEESL 591
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 177 bits (451), Expect = 5e-46
Identities = 90/234 (38%), Positives = 137/234 (58%), Gaps = 36/234 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKST+ LL Y G + +D + L + + +V Q+ VLF+ S++
Sbjct: 513 VGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y G + +EE+ AA +A+ H+
Sbjct: 573 ENIAY----------------------------GLT------DTPDEEIMAAAKAANAHD 598
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I+ FP+GYDT+VGE+G +LSGG+KQR+AIAR L++ P++++LDEATSALD + E+ +Q
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
+ +R ASRT +++AHRLST+ AD+ILV+ G +VE G H++L+E G Y +
Sbjct: 659 SRSR--ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
Score = 37.4 bits (87), Expect = 0.046
Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
G +T VGE+G +LSGG+KQR+AIA +LV KP V D
Sbjct: 606 GYDTEVGEKGSQLSGGQKQRIAIA-RALVRKPRVLILD 642
Score = 35.9 bits (83), Expect = 0.14
Identities = 42/204 (20%), Positives = 81/204 (39%), Gaps = 10/204 (4%)
Query: 642 TREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIA 701
I +LFR L L + KTGE+ ++ T ++S L+ + ++ L +++
Sbjct: 233 NLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNV-NVLLRNLVMLLG 291
Query: 702 IVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFE 761
++ F+ S ++ + L + V + ++ A N + ++L
Sbjct: 292 LLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMR 351
Query: 762 TVKYYGAEEYEIKEYGKAI----QTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCV 817
TV+ + AEE E + +A+ Q + + L + L LI L G L
Sbjct: 352 TVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQL-- 409
Query: 818 HEVVNNQTLTVGDYTLFVSYILQL 841
V ++ G+ F+ Y QL
Sbjct: 410 ---VLTGKVSSGNLVSFLLYQEQL 430
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome bd
complex is further supported by the conserved operon
structure found outside the gammaproteobacteria (cydABCD)
containing both the transporter and oxidase genes
components. The genes used as the seed members for this
model are all either found in the gammproteobacterial
context or the CydABCD context. All members of this
family scoring above trusted at the time of its creation
were from genomes which encode a cytochrome bd complex.
Unfortunately, the gene symbol nomenclature adopted based
on this operon in B. subtilis assigns cydC to the third
gene in the operon where this gene is actually homologous
to the E. coli cydD gene. We have chosen to name all
homologs in this family in accordance with the precedence
of publication of the E. coli name, CydD.
Length = 529
Score = 172 bits (437), Expect = 2e-45
Identities = 138/540 (25%), Positives = 210/540 (38%), Gaps = 120/540 (22%)
Query: 641 TTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVI 700
++ L + L RW R +GE+ + G ++ L Y + +P ++ VI
Sbjct: 75 VKSQLRERLLEAVAALGPRWLQGRPSGELATLALEGVEA---LDGY-FARYLPQLVLAVI 130
Query: 701 ---AIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRS---I 754
AI+ V G+I+ T L + I++ W Q AL+ S +
Sbjct: 131 VPLAILAAVFPQDWISGLILLLTAPLIPIFMILIG-WAA--QAAARKQWAALSRLSGHFL 187
Query: 755 DSLLNFETVKYYGAEEYEIK-------EYGKA-IQTYQVAEYQNSLSLVFLNSLQNLIIT 806
D L T+K +G + + EY + ++ ++A + +S L +L ++
Sbjct: 188 DRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIA-FLSSAVLELFATLSVALVA 246
Query: 807 ---G-GLLAGSLLCVHEVVNNQTLTVGDYTLFVSYIL--QLYVPL--------------N 846
G LLAG L L G LFV +L + Y+PL
Sbjct: 247 VYIGFRLLAGDL----------DLATG---LFV-LLLAPEFYLPLRQLGAQYHARADGVA 292
Query: 847 WFDALTRYLEASLVPLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEE-DQF 905
+AL L+A+ PL K + +
Sbjct: 293 AAEALFAVLDAAPRPLAGKAPV-----------TAAPAPSLEFSGVSVAYPGRRPALRPV 341
Query: 906 GFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 965
F G R A+ VG SGAGKST++ LL F D G I ++
Sbjct: 342 SFTVPPGERVAL------------------VGPSGAGKSTLLNLLLGFVDPTEGSIAVNG 383
Query: 966 QNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILS 1025
+ S R I VPQ LF +I NI+ AR
Sbjct: 384 VPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR----------------------- 420
Query: 1026 FPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAI 1085
PD AS+ E++EA A + E + + P G DT +GE G LSGG+ QR+A+
Sbjct: 421 -PD----------ASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLAL 469
Query: 1086 ARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 1145
AR L+ ++LLDE T+ LD +TE + AL + RT ++V HRL+ AD I+V+
Sbjct: 470 ARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
Score = 38.0 bits (89), Expect = 0.031
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 564 ALYLGKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLV 600
AL G +T +GE G LSGG+ QR+A+A L D PL+
Sbjct: 443 ALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLL 480
Score = 31.5 bits (72), Expect = 3.3
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 483 TTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVI 542
++ L + L RW R +GE+ + G ++ L Y + +P ++ VI
Sbjct: 75 VKSQLRERLLEAVAALGPRWLQGRPSGELATLALEGVEA---LDGY-FARYLPQLVLAVI 130
Query: 543 ---AIVFFVSTFSTWYGVIVFTTMAL 565
AI+ V G+I+ T L
Sbjct: 131 VPLAILAAVFPQDWISGLILLLTAPL 156
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are not
cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 173 bits (441), Expect = 7e-45
Identities = 82/225 (36%), Positives = 118/225 (52%), Gaps = 34/225 (15%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996
G+ G+GKST+++LL Y G + +D +I+ + A LR+ IG VPQD LF +++
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557
Query: 997 NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056
NI A +EE+ AA A + E + H
Sbjct: 558 NIALGAPYADDEEILRAAELAGVTEFV----------------------------RRH-- 587
Query: 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA 1116
PDG D Q+GERG LSGG++Q VA+AR LL+ P I+LLDE TSA+D ++E +
Sbjct: 588 ----PDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643
Query: 1117 LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLE 1161
L R A +T ++V HR S + D I+VM G IV G +++LE
Sbjct: 644 LKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688
Score = 34.5 bits (80), Expect = 0.43
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GERG LSGG++Q VA+A
Sbjct: 595 IGERGRSLSGGQRQAVALA 613
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 167 bits (426), Expect = 1e-43
Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 35/235 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G++G GKST+++LL R +D + G+I ++ Q I S+A+LRQAI VV Q LF+ +++
Sbjct: 372 LGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ A NAS+E + E + E
Sbjct: 432 DNLLLAAPNASDEALIEVLQQVGL-----------------------------------E 456
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
++L G + +GE G +LSGGE++R+ IAR LL ++LLDE T LD +TER I
Sbjct: 457 KLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILE 516
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW 1170
L ++T +++ HRL+ + D I VM G+I+E+G H+ELL + G Y +
Sbjct: 517 LLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLK 571
Score = 31.7 bits (73), Expect = 2.6
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 573 GERGLKLSGGEKQRVAIALNSLVDKPLV 600
GE G +LSGGE++R+ IA L D PL+
Sbjct: 470 GEGGRQLSGGEQRRLGIARALLHDAPLL 497
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter,
ATP-binding protein. Members of this protein family are
ABC transporter ATP-binding subunits, part of a
three-gene putative bacteriocin transport operon. The
other subunits include another ATP-binding subunit
(TIGR03796), which has an N-terminal leader sequence
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, members of protein families related to
nitrile hydratase alpha subunit or to nif11 have
undergone paralogous family expansions, with members
possessing a putative bacteriocin cleavage region ending
with a classic Gly-Gly motif. Those sets of putative
bacteriocins, members of this protein family and its
partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 168 bits (427), Expect = 4e-43
Identities = 88/232 (37%), Positives = 132/232 (56%), Gaps = 37/232 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKST++RLL F ESG +F D Q++ + ++R+ +GVV Q+ L + SI
Sbjct: 485 VGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIF 544
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A A + + +E EAA A + E
Sbjct: 545 ENI---------------AGGAPL--------------------TLDEAWEAARMAGLAE 569
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I + P G T + E G LSGG++QR+ IAR L++ P+I+L DEATSALD +T+ +
Sbjct: 570 DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE 629
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYA 1167
+L R+ +R I++AHRLSTI +AD I V+ AG +V++G ++EL+ R G++A
Sbjct: 630 SLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFA 679
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 165 bits (420), Expect = 1e-42
Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 35/242 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SGAGK++++ L F + G + I+ ++ + S R+ + V Q+ L + +++
Sbjct: 382 VGPSGAGKTSLLNALLGFLPYQ-GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ +AS+E++++A +A + E F
Sbjct: 441 DNVLLGNPDASDEQLQQALENAWVSE----F----------------------------- 467
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+ P G DT +G++ LS G+ QR+A+AR LL+ Q++LLDE T++LD +E+ +
Sbjct: 468 -LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ 526
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175
ALN +TT++V H+L + D+I VM G+IV++G + EL + G++A++ +
Sbjct: 527 ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQE 586
Query: 1176 KQ 1177
+
Sbjct: 587 EI 588
Score = 30.2 bits (69), Expect = 7.5
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 564 ALYLGKNT-VGERGLKLSGGEKQRVAIA 590
L G +T +G++ LS G+ QR+A+A
Sbjct: 470 LLPQGLDTPIGDQAAGLSVGQAQRLALA 497
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily
C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 146 bits (371), Expect = 5e-40
Identities = 75/220 (34%), Positives = 111/220 (50%), Gaps = 53/220 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++GAGKST+I LFRF + E G I ID +I T+ LR ++ ++PQD LF+ +I+
Sbjct: 40 VGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR 99
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ D +D S+EE+ A
Sbjct: 100 SNL-----------------------------DPFDEY------SDEEIYGA-------- 116
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+V E GL LS G++Q + +AR LLK P++++LDEAT+++D T+ IQ
Sbjct: 117 ----------LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQK 166
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGR 1155
+ + T + +AHRL TII D+ILVM AGE+ E
Sbjct: 167 TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 160 bits (407), Expect = 1e-39
Identities = 95/276 (34%), Positives = 148/276 (53%), Gaps = 26/276 (9%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFI-DNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 994
VG+SG GKSTI++L+ R YD GDI I D+ N+K ++ R IGVV QD +LF+NSI
Sbjct: 417 VGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSI 476
Query: 995 KFNIQYA-----RINASEEEVKE--AATSADIHER-------------ILSFPDGYDTQY 1034
K NI+Y+ + A E + + ++R + + D +
Sbjct: 477 KNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIE 536
Query: 1035 ARIN---ASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK 1091
R N + EV + + IH+ + + PD Y+T VG KLSGG+KQR++IAR +++
Sbjct: 537 MRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIR 596
Query: 1092 APQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAGE 1149
P+I++LDEATS+LD K+E +Q +N + +R TII+AHRLSTI +A+ I V+ E
Sbjct: 597 NPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656
Query: 1150 IVERGRHEELLERNGVYASMWIQQNTKQSEPSSDES 1185
+ + E +N K +++ +
Sbjct: 657 RGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNN 692
Score = 140 bits (355), Expect = 1e-33
Identities = 95/262 (36%), Positives = 150/262 (57%), Gaps = 34/262 (12%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFI------------------DNQNI--KTVSQAS 975
VG++G+GKST++ LL RFYD+++ + + QN+ K V++ S
Sbjct: 1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259
Query: 976 LRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADI--HERILSFPDGYDT- 1032
L + G +D+ +F NS K I ++ + +K+ I E +L Y+
Sbjct: 1260 LTKE-GGSGEDSTVFKNSGK--ILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENI 1316
Query: 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKA 1092
++ + +A+ E+VK A A I E I S P+ YDT VG G LSGG+KQR+AIAR LL+
Sbjct: 1317 KFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLRE 1376
Query: 1093 PQIVLLDEATSALDTKTERNIQSALNRV--CASRTTIIVAHRLSTIIHADEILVMH---- 1146
P+I+LLDEATS+LD+ +E+ I+ + + A +T I +AHR+++I +D+I+V +
Sbjct: 1377 PKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDR 1436
Query: 1147 AGEIVE-RGRHEELLE-RNGVY 1166
G V+ G HEELL ++GVY
Sbjct: 1437 TGSFVQAHGTHEELLSVQDGVY 1458
Score = 31.2 bits (70), Expect = 4.3
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
VG G LSGG+KQR+AIA +L+ +P + D
Sbjct: 1352 VGPYGKSLSGGQKQRIAIA-RALLREPKILLLD 1383
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and
permease components [General function prediction only].
Length = 580
Score = 150 bits (381), Expect = 7e-38
Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 35/226 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G SG+GKST+ RLL + SG + +D +++ + L + IG +PQD LF+ +I
Sbjct: 368 IGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIA 427
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI AR A E+V EAA A +HE
Sbjct: 428 ENI--ARF--------------------------------GEEADPEKVIEAARLAGVHE 453
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
IL P GYDT++GE G LSGG++QR+A+AR L P +V+LDE S LD++ E + +
Sbjct: 454 LILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA 513
Query: 1116 ALNRVCAS-RTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL 1160
A+ A T +++AHR S + D+ILV+ G I G EE+L
Sbjct: 514 AILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559
Score = 33.8 bits (78), Expect = 0.62
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GE G LSGG++QR+A+A
Sbjct: 466 IGEGGATLSGGQRQRIALA 484
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter,
PrtD family. Type I protein secretion is a system in
some Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are not
cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion [Protein fate, Protein and peptide secretion
and trafficking].
Length = 544
Score = 149 bits (377), Expect = 2e-37
Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 35/226 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G SG+GKST+ RL+ + SG + +D ++K + + + IG +PQD LF ++
Sbjct: 350 IGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVA 409
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI AR F + NA E++ EAA A +HE
Sbjct: 410 ENI--AR-----------------------FGE---------NADPEKIIEAAKLAGVHE 435
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
IL PDGYDT +G G LSGG++QR+A+AR L P++V+LDE S LD + E+ + +
Sbjct: 436 LILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN 495
Query: 1116 ALNRVCASR-TTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL 1160
A+ + A T +++ HR S + D+ILV+ G I G +E+L
Sbjct: 496 AIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541
Score = 31.2 bits (71), Expect = 4.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+G G LSGG++QR+A+A
Sbjct: 448 IGPGGATLSGGQRQRIALA 466
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP (Multidrug
Resistance Protein)-like transporters are involved in
drug, peptide, and lipid export. They belong to the
subfamily C of the ATP-binding cassette (ABC) superfamily
of transport proteins. The ABCC subfamily contains
transporters with a diverse functional spectrum that
includes ion transport, cell surface receptor, and toxin
secretion activities. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 171
Score = 126 bits (319), Expect = 2e-33
Identities = 42/75 (56%), Positives = 55/75 (73%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134
LSGG++QR+AIAR LL+ P I++LDEATSALD +TE I AL + +T I++AHRLS
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156
Query: 1135 TIIHADEILVMHAGE 1149
TI AD I+V+ G
Sbjct: 157 TIRDADRIIVLDDGR 171
Score = 102 bits (258), Expect = 5e-25
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKST+++LL R YD SG+I ID +++ + SLR+ I VPQD LF+ +I+
Sbjct: 34 VGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIR 93
Query: 996 FNI 998
NI
Sbjct: 94 ENI 96
Score = 32.0 bits (74), Expect = 0.95
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG++QR+AIA
Sbjct: 97 LSGGQRQRIAIA 108
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome bd
complex is further supported by the conserved operon
structure found outside the gammaproteobacteria (cydABCD)
containing both the transporter and oxidase genes
components. The genes used as the seed members for this
model are all either found in the gammproteobacterial
context or the CydABCD context. All members of this
family scoring above trusted at the time of its creation
were from genomes which encode a cytochrome bd complex.
Length = 530
Score = 134 bits (339), Expect = 9e-33
Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 34/198 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G SG+GKST++ L D G++ +D + ++ Q +R+ + V QD LF+ +++
Sbjct: 367 LGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVR 426
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N++ AR PD A++EE+ A + +
Sbjct: 427 ENLRLAR------------------------PD----------ATDEELWAALERVGLAD 452
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+ + PDG DT +GE G +LSGGE+QR+A+AR LL I+LLDE T LD +T +
Sbjct: 453 WLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLE 512
Query: 1116 ALNRVCASRTTIIVAHRL 1133
L + RT +++ H L
Sbjct: 513 DLLAALSGRTVVLITHHL 530
Score = 35.0 bits (81), Expect = 0.24
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 564 ALYLGKNT-VGERGLKLSGGEKQRVAIALNSLVDKPLV 600
AL G +T +GE G +LSGGE+QR+A+A L D P++
Sbjct: 456 ALPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 493
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 135 bits (341), Expect = 7e-32
Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 36/235 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++GAGKS+++ LFR ++E G I ID +I LR+ +G++PQ VLF+ +++
Sbjct: 1271 VGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
FN+ D ++ ++ ++ E+ A + +
Sbjct: 1331 FNL-----------------------------DPFNEH------NDADLWESLERAHLKD 1355
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I G D +V E G S G++Q +++AR LL+ +I++LDEAT+A+D +T+ IQ
Sbjct: 1356 VIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQK 1415
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER-NGVYASM 1169
+ S T +I+AHRL+TII D ILV+ AG +VE E LL ++ M
Sbjct: 1416 TIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM 1470
Score = 74.0 bits (182), Expect = 5e-13
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 1061 PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNR 1119
P G T++GERG+ +SGG+KQRV++AR + + + D+ SALD R + +
Sbjct: 727 PGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKD 786
Query: 1120 VCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEEL 1159
+T ++V ++L + D I+++H G I E G +EEL
Sbjct: 787 ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEEL 826
Score = 35.9 bits (83), Expect = 0.15
Identities = 12/19 (63%), Positives = 18/19 (94%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GERG+ +SGG+KQRV++A
Sbjct: 734 IGERGVNISGGQKQRVSMA 752
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain
of the phosphate transport system. Phosphate uptake is
of fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient. The
Pst system of E. coli comprises four distinct subunits
encoded by the pstS, pstA, pstB, and pstC genes. The PstS
protein is a phosphate-binding protein located in the
periplasmic space. PstA and PstC are hydrophobic and they
form the transmembrane portion of the Pst system. PstB is
the catalytic subunit, which couples the energy of ATP
hydrolysis to the import of phosphate across cellular
membranes through the Pst system, often referred as
ABC-protein. PstB belongs to one of the largest
superfamilies of proteins characterized by a highly
conserved adenosine triphosphate (ATP) binding cassette
(ABC), which is also a nucleotide binding domain (NBD).
Length = 227
Score = 120 bits (304), Expect = 1e-30
Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 50/235 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKTVSQA--SLRQAIGVVPQDTV 988
+G SG GKST++RLL R D+ G++ +D ++I + LR+ +G+V Q
Sbjct: 32 IGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y R++ +E V+EA
Sbjct: 92 PFPGSIYDNVAYGLRLH----------------------------GIKLKEELDERVEEA 123
Query: 1048 ATSADIHERILSFPDGYDTQVGER--GLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
A + + V +R L LSGG++QR+ +AR L P+++LLDE TSAL
Sbjct: 124 LRKAALWDE-----------VKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172
Query: 1106 DTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEEL 1159
D + I+ + + T +IV H + AD + G +VE G E++
Sbjct: 173 DPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
Score = 31.4 bits (72), Expect = 2.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 576 GLKLSGGEKQRVAIA 590
L LSGG++QR+ +A
Sbjct: 139 ALGLSGGQQQRLCLA 153
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 130 bits (328), Expect = 2e-30
Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 35/234 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++GAGKS++ LFR + G+I ID NI + LR I ++PQD VLF+ S++
Sbjct: 1318 VGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ P QY S+EEV A A +
Sbjct: 1378 MNLD---------------------------PFS---QY-----SDEEVWWALELAHLKT 1402
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+ + PD D + E G LS G++Q V +AR LL+ +I++LDEAT+A+D +T+ IQS
Sbjct: 1403 FVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQS 1462
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
+ T + +AHRL+TI+ ++V+ GE+ E G LL++ G++ SM
Sbjct: 1463 TIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSM 1516
Score = 85.4 bits (211), Expect = 1e-16
Identities = 68/257 (26%), Positives = 114/257 (44%), Gaps = 51/257 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VGQ G GKS+++ L D K ++ ++ VPQ + N+S++
Sbjct: 670 VGQVGCGKSSLLSALLAEMD-------------KVEGHVHMKGSVAYVPQQAWIQNDSLR 716
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI + + A E+ + A A D+
Sbjct: 717 ENILFGK--ALNEKYYQQVLEA-----------------------------CALLPDLE- 744
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
IL P G T++GE+G+ LSGG+KQRV++AR + I L D+ SA+D ++I
Sbjct: 745 -IL--PSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 801
Query: 1116 AL---NRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQ 1172
+ V ++T I+V H +S + D I+VM G+I E G ++ELL+R+G +A
Sbjct: 802 HVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRT 861
Query: 1173 QNTKQSEPSSDESPPSS 1189
+ + ++S +
Sbjct: 862 YAPDEQQGHLEDSWTAL 878
Score = 33.0 bits (75), Expect = 1.3
Identities = 12/19 (63%), Positives = 18/19 (94%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GE+G+ LSGG+KQRV++A
Sbjct: 754 IGEKGVNLSGGQKQRVSLA 772
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 130 bits (327), Expect = 3e-30
Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 35/229 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++GAGKS+++ LFR ++E G I ID+ ++ LR+ + ++PQ VLF+ +++
Sbjct: 1268 VGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
FNI F + D ++ EA A I +
Sbjct: 1328 FNID-------------------------PFSEHNDA----------DLWEALERAHIKD 1352
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I P G D +V E G S G++Q +++AR LL+ +I++LDEAT+++D +T+ IQ
Sbjct: 1353 VIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQR 1412
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNG 1164
+ S T +++AHRL+TII D+ILV+ +G+++E +ELL R+
Sbjct: 1413 TIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDT 1461
Score = 64.6 bits (157), Expect = 3e-10
Identities = 63/281 (22%), Positives = 112/281 (39%), Gaps = 57/281 (20%)
Query: 920 LRMIALESQLVWYLLQVGQSGAGKSTIIR-LLFRFYDVESGDIFIDNQNIKTVSQASLRQ 978
L I LE + + VG +G GK+++I +L E+ + I R
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVI-------------RG 679
Query: 979 AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARIN 1038
++ VPQ + +FN +++ NI + SE + +A H+ L
Sbjct: 680 SVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDL-------------- 725
Query: 1039 ASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLL 1098
P T++GERG+ +SGG+KQRV++AR + I +
Sbjct: 726 ---------------------LPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIF 764
Query: 1099 DEATSALDTKTERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHE 1157
D+ SALD + S + +T ++V ++L + D I+++ G I E G
Sbjct: 765 DDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFA 824
Query: 1158 ELLERNGVY-------ASMWIQQNTKQSEPSSDESPPSSTA 1191
EL + ++ M Q ++ + + P+ T
Sbjct: 825 ELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTI 865
Score = 32.6 bits (74), Expect = 1.7
Identities = 12/19 (63%), Positives = 18/19 (94%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GERG+ +SGG+KQRV++A
Sbjct: 734 IGERGVNISGGQKQRVSMA 752
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE). The
NikABCDE system of E. coli belongs to this family and is
composed of the periplasmic binding protein NikA, two
integral membrane components (NikB and NikC), and two
ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 117 bits (296), Expect = 1e-29
Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 45/228 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQDTVLFNN 992
VG+SG+GKST+ R + SG I D +++ +S+ R+ I +V QD
Sbjct: 37 VGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQD------ 90
Query: 993 SIKFNIQYARINAS---EEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
+ +N E++ E RI + + + V
Sbjct: 91 ------PMSSLNPRMTIGEQIAEPL-------RIHGKLSKKEARKEAVLLLLVGVGLPEE 137
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ +P +LSGG++QRVAIAR L P++++ DE TSALD
Sbjct: 138 VLN------RYPH-----------ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
Query: 1110 ERNIQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERG 1154
+ I L ++ T + + H L + AD + VM+AG+IVE G
Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
Score = 31.3 bits (72), Expect = 2.4
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 579 LSGGEKQRVAIALNSLVDKP 598
LSGG++QRVAIA +L P
Sbjct: 146 LSGGQRQRVAIAR-ALALNP 164
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain
of methionine transporter. MetN (also known as YusC) is
an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 116 bits (292), Expect = 5e-29
Identities = 69/235 (29%), Positives = 105/235 (44%), Gaps = 52/235 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQDTVLFNN 992
+G+SGAGKST+IR + SG + +D ++ +S LR+A IG++ Q L ++
Sbjct: 37 IGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96
Query: 993 SIKF-NIQYA-RI-NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
F N+ I + E++E +L D
Sbjct: 97 RTVFENVALPLEIAGVPKAEIEERV------LELLELVGLED------------------ 132
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
D Y Q LSGG+KQRV IAR L P+++L DEATSALD +T
Sbjct: 133 ----------KADAYPAQ-------LSGGQKQRVGIARALANNPKVLLCDEATSALDPET 175
Query: 1110 ERNIQSALNRVCASR--TTIIVAHRLSTI--IHADEILVMHAGEIVERGRHEELL 1160
++I + L + T +++ H + + I D + VM GE+VE G EE+
Sbjct: 176 TQSILALLRDINRELGLTIVLITHEMEVVKRI-CDRVAVMEKGEVVEEGTVEEVF 229
Score = 32.9 bits (76), Expect = 0.67
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 579 LSGGEKQRVAIA 590
LSGG+KQRV IA
Sbjct: 141 LSGGQKQRVGIA 152
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 339
Score = 118 bits (299), Expect = 6e-29
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 48/232 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQDTVLFNN 992
+G SGAGKST++RL+ SG +F+D Q++ +S+A LRQ IG++ Q L ++
Sbjct: 38 IGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS 97
Query: 993 SIKF-NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
F N+ + A A+I +R V E
Sbjct: 98 RTVFENVAFPLELAGV-------PKAEIKQR---------------------VAELLELV 129
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ ++ +P +LSGG+KQRVAIAR L P+I+L DEATSALD +T +
Sbjct: 130 GLSDKADRYP-----------AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178
Query: 1112 NIQSALNRVCASR--TTIIVAHRLSTI--IHADEILVMHAGEIVERGRHEEL 1159
+I L + T +++ H + + I D + V+ G +VE G E+
Sbjct: 179 SILELLKDINRELGLTIVLITHEMEVVKRI-CDRVAVLDQGRLVEEGTVSEV 229
Score = 32.2 bits (74), Expect = 1.7
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG+KQRVAIA
Sbjct: 142 LSGGQKQRVAIA 153
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 213
Score = 114 bits (288), Expect = 1e-28
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 47/224 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G SG GK+T++RL+ +SG+I ID +++ V R+ IG+V QD LF + ++
Sbjct: 32 LGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTV 89
Query: 995 KFNIQYARINASEEEVKEAATS-ADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
NI + +K A+I R V+E +
Sbjct: 90 AENIAFG--------LKLRGVPKAEIRAR---------------------VRELLELVGL 120
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ +P +LSGG++QRVA+AR L + P ++LLDE SALD K +
Sbjct: 121 EGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169
Query: 1114 QSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERG 1154
+ L + TTI V H + AD I VM+ G IV+ G
Sbjct: 170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
Score = 31.3 bits (72), Expect = 2.1
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG++QRVA+A
Sbjct: 131 LSGGQQQRVALA 142
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition metal
cobalt is an essential component of many enzymes and must
be transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport systems.
Length = 211
Score = 111 bits (281), Expect = 1e-27
Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 59/226 (26%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ--DTVLFNNS 993
VG +G+GKST++RLL SG++ +D +++ +S LR+ +G+V Q D F +
Sbjct: 33 VGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINA--SEEEVKEAATSA 1051
+ EEEV + N EEE++E A
Sbjct: 93 V------------EEEVA----------------------FGLENLGLPEEEIEERVEEA 118
Query: 1052 DIHERILSFPDGYDTQVGERGLK------LSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
VG GL+ LSGG+KQRVAIA L P I+LLDE T+ L
Sbjct: 119 L-------------ELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165
Query: 1106 DTKTERNIQSALNRVCASRTTIIVA-HRLSTII-HADEILVMHAGE 1149
D R + L ++ A TII+ H L ++ AD ++V+ G+
Sbjct: 166 DPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
Score = 34.0 bits (79), Expect = 0.26
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG+KQRVAIA
Sbjct: 135 LSGGQKQRVAIA 146
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea
receptor SUR. The SUR domain 2. The sulfonylurea
receptor SUR is an ATP binding cassette (ABC) protein of
the ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor passive,
but associates with the potassium channel proteins Kir6.1
or Kir6.2 to form the ATP-sensitive potassium (K(ATP))
channel. Within the channel complex, SUR serves as a
regulatory subunit that fine-tunes the gating of Kir6.x
in response to alterations in cellular metabolism. It
constitutes a major pharmaceutical target as it binds
numerous drugs, K(ATP) channel openers and blockers,
capable of up- or down-regulating channel activity.
Length = 257
Score = 113 bits (283), Expect = 1e-27
Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 36/234 (15%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996
G++G+GKS++ FR D+ G I ID +I + +LR + ++ QD +LF+ SI+F
Sbjct: 54 GRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRF 113
Query: 997 NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056
N+ + E K +++ + EA A +
Sbjct: 114 NL--------DPECK---------------------------CTDDRLWEALEIAQLKNM 138
Query: 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA 1116
+ S P G D V E G S G++Q +AR ++ I+++DEAT+++D TE +Q
Sbjct: 139 VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKV 198
Query: 1117 LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL-ERNGVYASM 1169
+ A RT + +AHR+STI+ AD +LV+ G +VE E LL + +GV+AS+
Sbjct: 199 VMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 113 bits (285), Expect = 5e-27
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 44/231 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G SG GK+T++R++ F SG+I +D ++I V ++ IG+V Q LF + ++
Sbjct: 37 LGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTV 94
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
+ N+ + +V++ A+I R V+EA +
Sbjct: 95 EENVAF------GLKVRKKLKKAEIKAR---------------------VEEALELVGLE 127
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
P +LSGG++QRVA+AR L+ P+++LLDE SALD K ++
Sbjct: 128 GFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176
Query: 1115 SALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
L + T + V H + +D I VM+ G I + G EE+ ER
Sbjct: 177 KELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227
Score = 33.4 bits (77), Expect = 0.69
Identities = 13/23 (56%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Query: 578 KLSGGEKQRVAIALNSLVDKPLV 600
+LSGG++QRVA+A +LV +P V
Sbjct: 136 QLSGGQQQRVALA-RALVPEPKV 157
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 235
Score = 109 bits (274), Expect = 1e-26
Identities = 64/247 (25%), Positives = 115/247 (46%), Gaps = 45/247 (18%)
Query: 920 LRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979
L+ ++LE + Y + +G +G+GKS ++ + F +SG I ++ ++I + ++
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 980 IGVVPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARIN 1038
I VPQ+ LF + ++ NI Y ++ +
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEI-------------------------- 106
Query: 1039 ASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLL 1098
E +V E A I + P LSGGE+QRVAIAR L+ P+I+LL
Sbjct: 107 --ERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARALVVNPKILLL 153
Query: 1099 DEATSALDTKTERNIQSALNRVC-ASRTTII-VAHRLSTI-IHADEILVMHAGEIVERGR 1155
DE SALD +T+ ++ L ++ T++ V H AD++ +M G++++ G+
Sbjct: 154 DEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213
Query: 1156 HEELLER 1162
EE+ ++
Sbjct: 214 PEEVFKK 220
Score = 32.3 bits (74), Expect = 1.2
Identities = 14/20 (70%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Query: 579 LSGGEKQRVAIALNSLVDKP 598
LSGGE+QRVAIA +LV P
Sbjct: 130 LSGGEQQRVAIA-RALVVNP 148
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 108 bits (273), Expect = 2e-26
Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 49/240 (20%)
Query: 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV-SQASLRQAIGVVPQ--DTV 988
+L +G +G+GKST+++LL SG++ +D + + S LRQ +G+V Q D
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQ 91
Query: 989 LFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
LF +++ + + N EE++E V E
Sbjct: 92 LFGPTVEDEVAFGLENLGLPREEIEER------------------------------VAE 121
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
A + E + P LSGG+KQRVAIA L P+I+LLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPP-----------FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 1107 TKTERNIQSALNRVCASR--TTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERN 1163
K R + L ++ T IIV H L ++ +AD ++V+ G+I+ G E+
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Score = 33.8 bits (78), Expect = 0.45
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG+KQRVAIA
Sbjct: 139 LSGGQKQRVAIA 150
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component
[Defense mechanisms].
Length = 293
Score = 108 bits (273), Expect = 7e-26
Identities = 64/234 (27%), Positives = 104/234 (44%), Gaps = 46/234 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +GAGK+T++++L SG+I + ++ A +R+ IG VPQ+ L
Sbjct: 37 LGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYVPQEPSL------ 89
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
Y + E L F +AR+ +E E I E
Sbjct: 90 ----YPELTVRE---------------NLEF-------FARLYGLSKEEAEE----RIEE 119
Query: 1056 --RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ D + +V LSGG KQR++IA LL P++++LDE TS LD ++ R I
Sbjct: 120 LLELFGLEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175
Query: 1114 QSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERNG 1164
L + T ++ H L D +++++ G+I+ G EEL E+ G
Sbjct: 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229
Score = 33.0 bits (76), Expect = 0.91
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 578 KLSGGEKQRVAIALNSLVDKPLVFRWD 604
LSGG KQR++IAL +L+ P + D
Sbjct: 136 TLSGGMKQRLSIAL-ALLHDPELLILD 161
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 108 bits (271), Expect = 3e-24
Identities = 71/233 (30%), Positives = 105/233 (45%), Gaps = 41/233 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIGVVPQDTVLFNNS 993
VG+SG+GKST+ R+L SG I D Q++ LR+ I +V QD
Sbjct: 323 VGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQD------- 375
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
Y+ +N T DI L G R A A++
Sbjct: 376 -----PYSSLNPR-------MTVGDILAEPLRIHGGGSGAERR-----------ARVAEL 412
Query: 1054 HERI-LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
E + L P+ D E LSGG++QRVAIAR L P++++LDE SALD +
Sbjct: 413 LELVGLP-PEFLDRYPHE----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQ 467
Query: 1113 IQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ + L + T + ++H L+ + + AD + VM+ G IVE G E++ E
Sbjct: 468 VLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
Score = 107 bits (269), Expect = 6e-24
Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 50/241 (20%)
Query: 936 VGQSGAGKST----IIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ----AIGVVPQDT 987
VG+SG+GKST ++ LL + SG++ +D +++ +S+ +R+ I ++ QD
Sbjct: 41 VGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP 100
Query: 988 V-LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
+ N + Q + A + + E
Sbjct: 101 MTSLNPVMTIGDQIREALRLHGKGSRAE-------------------------ARKRAVE 135
Query: 1047 AATSADIH--ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
+ ER +P +LSGG +QRV IA L P++++ DE T+A
Sbjct: 136 LLEQVGLPDPERRDRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTA 184
Query: 1105 LDTKTERNIQSALNRVCASRTT--IIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
LD T+ I L + + + H L + AD ++VM+ GEIVE G EE+L
Sbjct: 185 LDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
Query: 1162 R 1162
Sbjct: 245 N 245
Score = 32.5 bits (75), Expect = 1.4
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 579 LSGGEKQRVAIAL 591
LSGG++QRVAIA
Sbjct: 430 LSGGQRQRVAIAR 442
Score = 31.0 bits (71), Expect = 4.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 579 LSGGEKQRVAIA 590
LSGG +QRV IA
Sbjct: 155 LSGGMRQRVMIA 166
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 103 bits (259), Expect = 6e-24
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 43/232 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G SG+GK+T ++++ R + SG+I ID ++I + LR+ IG V Q LF +
Sbjct: 33 IGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH--- 89
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPD--GYDTQYARINASEEEVKEAATSADI 1053
+ E I + P G+D + RI ++ E +
Sbjct: 90 LTVA---------------------ENIATVPKLLGWDKE--RI---KKRADELLDLVGL 123
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ D Y + LSGG++QRV +AR L P I+L+DE ALD T + +
Sbjct: 124 DPS--EYADRYPHE-------LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL 174
Query: 1114 QSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
Q + + +T + V H + + AD I VM AGEIV+ +E+L
Sbjct: 175 QEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or opuA.
A gene library from L.lactis functionally complements an
E.coli proU mutant. The comlementing locus is similar to
a opuA locus in B.sutlis. This clarifies the differences
in nomenclature [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 363
Score = 104 bits (261), Expect = 8e-24
Identities = 72/239 (30%), Positives = 103/239 (43%), Gaps = 59/239 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR-----------QAIGVVP 984
+G SG+GKST +R+L R + +G IFID +NI S LR Q + P
Sbjct: 25 MGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84
Query: 985 QDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044
T+L N + E+E KE A
Sbjct: 85 HMTILQN--TSLGPELLGWP--EQERKEKA------------------------------ 110
Query: 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
E + E +PD +LSGG +QRV +AR L P I+L+DEA SA
Sbjct: 111 LELLKLVGLEEYEHRYPD-----------ELSGGMQQRVGLARALAAEPDILLMDEAFSA 159
Query: 1105 LDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
LD ++Q L ++ A+ +T + + H L I D I++M AGEIV+ G +E+L
Sbjct: 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 100 bits (252), Expect = 1e-23
Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 47/229 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIGVVPQDTVLFN 991
VG SG+GKST++ LL SG++ I+ +++ +S+ L R+ IG V Q+ L
Sbjct: 37 VGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96
Query: 992 N-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
+ ++ N++ + A + + +E
Sbjct: 97 DLTVLENVELPLLIAGK----------------------------SAGRRKRAAEELLEV 128
Query: 1051 ADIHERILS-FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ +R+L P +LSGG++QRVAIAR L+ P+I+L DE T LD+KT
Sbjct: 129 LGLEDRLLKKKPS-----------ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177
Query: 1110 ERNIQSALNRVCASR--TTIIVAHRLSTIIHADEILVMHAGEIVERGRH 1156
+ + L + R T I+V H +AD ++ + G+I E
Sbjct: 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEEELD 226
Score = 35.2 bits (82), Expect = 0.13
Identities = 10/13 (76%), Positives = 13/13 (100%)
Query: 578 KLSGGEKQRVAIA 590
+LSGG++QRVAIA
Sbjct: 142 ELSGGQQQRVAIA 154
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 101 bits (254), Expect = 1e-23
Identities = 69/239 (28%), Positives = 101/239 (42%), Gaps = 59/239 (24%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR-----------QAIGVVPQ 985
G SG+GKST++R + R + SG + ID Q+I +S+ LR Q+ ++P
Sbjct: 57 GLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116
Query: 986 DTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
TVL N + +Q E +E A
Sbjct: 117 RTVLENVAFGLEVQ----GVPRAEREERAA------------------------------ 142
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
EA + +PD +LSGG +QRV +AR L P I+L+DEA SAL
Sbjct: 143 EALELVGLEGWEHKYPD-----------ELSGGMQQRVGLARALAVDPDILLMDEAFSAL 191
Query: 1106 DTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
D R +Q L R+ A +T + + H L + D I +M G +V+ G EE+L
Sbjct: 192 DPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 101 bits (253), Expect = 1e-23
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 45/232 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +G+GKST+++ L +SG++ +D ++I ++S L + + VPQ
Sbjct: 34 LGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93
Query: 996 FNI----QYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+ + +Y + + D EE V+EA
Sbjct: 94 YELVLLGRYPHLGLFGRP-----SKED----------------------EEIVEEALELL 126
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ D V E LSGGE+QRV IAR L + I+LLDE TS LD +
Sbjct: 127 GLEHLA-------DRPVDE----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175
Query: 1112 NIQSALNRVCASR--TTIIVAHRLS-TIIHADEILVMHAGEIVERGRHEELL 1160
+ L + + T ++V H L+ +AD ++++ G+IV +G EE+L
Sbjct: 176 EVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release of
lipoproteins from the cytoplasmic membrane (LolCDE). They
are clustered together phylogenetically. MacAB is an
exporter that confers resistance to macrolides, while the
LolCDE system is not a transporter at all. An FtsE null
mutants showed filamentous growth and appeared viable on
high salt medium only, indicating a role for FtsE in cell
division and/or salt transport. The LolCDE complex
catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 99.9 bits (250), Expect = 1e-23
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 46/222 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIGVVPQDTVLFN 991
VG SG+GKST++ +L SG++ +D +I +S+ L R+ IG V Q L
Sbjct: 36 VGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95
Query: 992 N-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
+ + N++ + A + ER +E
Sbjct: 96 DLTALENVELPLLLAGVP-------KKERRERA---------------------EELLER 127
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+ +R+ +P +LSGG++QRVAIAR L P+I+L DE T LD++T
Sbjct: 128 VGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176
Query: 1111 RNIQSALNRVCASR-TTIIVA-HRLSTIIHADEILVMHAGEI 1150
+ + L + TTI+V H +AD I+ + G+I
Sbjct: 177 KEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
Score = 34.8 bits (81), Expect = 0.16
Identities = 10/13 (76%), Positives = 13/13 (100%)
Query: 578 KLSGGEKQRVAIA 590
+LSGG++QRVAIA
Sbjct: 140 ELSGGQQQRVAIA 152
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 102 bits (256), Expect = 2e-23
Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 49/241 (20%)
Query: 936 VGQSGAGKST----IIRLL-FRFYDVESGDIFIDNQNIKTVSQASLRQ----AIGVVPQD 986
VG+SG+GKS I+ LL + G+I D +++ ++S+ LR+ I ++ QD
Sbjct: 37 VGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96
Query: 987 TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
+ S N I +++ E +H + LS + A+ E E
Sbjct: 97 PM---TS--LNPVM-TI---GDQIAEVL---RLHGKGLS------KKEAK-----ERAIE 133
Query: 1047 AATSADIH--ERIL-SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103
I ER L S+P +LSGG +QRV IA L P++++ DE T+
Sbjct: 134 LLELVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALALNPKLLIADEPTT 182
Query: 1104 ALDTKTERNIQSALNRVCASRTT--IIVAHRLSTII-HADEILVMHAGEIVERGRHEELL 1160
ALD + I L + + T I++ H L + AD + VM+AG IVE G EE+
Sbjct: 183 ALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
Query: 1161 E 1161
+
Sbjct: 243 K 243
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 107 bits (270), Expect = 2e-23
Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 37/236 (15%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++G+GKST++ R +V G+I ++ + I LR+ ++PQD VLF+ +++
Sbjct: 1342 VGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ + AS EV A + ER+ ASE E
Sbjct: 1402 QNVD-PFLEASSAEVWAALELVGLRERV---------------ASESE------------ 1433
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK-APQIVLLDEATSALDTKTERNIQ 1114
G D++V E G S G++Q + +AR LLK +L+DEAT+ +D +R IQ
Sbjct: 1434 -------GIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ 1486
Query: 1115 SALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLE-RNGVYASM 1169
+ + ++ T I +AHRL T+ D+I+VM G + E G EL+ R ++ SM
Sbjct: 1487 ATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSM 1542
Score = 74.4 bits (183), Expect = 3e-13
Identities = 56/253 (22%), Positives = 116/253 (45%), Gaps = 52/253 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +G+GKST+++ L +++ G ++ + ++I VPQ + N +++
Sbjct: 692 LGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVR 738
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI + EE+ +A + + + R++ E ++
Sbjct: 739 GNILFF----DEED------AARLADAV------------RVSQLEADLA---------- 766
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT-ERNIQ 1114
G +T++GE+G+ LSGG+K RV++AR + + LLD+ SALD ER ++
Sbjct: 767 ---QLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVE 823
Query: 1115 SALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW--IQ 1172
A +T ++ H++ + AD ++ + G + G + + R +YA++ ++
Sbjct: 824 ECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFM-RTSLYATLAAELK 882
Query: 1173 QNTKQSEPSSDES 1185
+N E +D
Sbjct: 883 ENKDSKEGDADAE 895
Score = 31.3 bits (71), Expect = 3.8
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GE+G+ LSGG+K RV++A
Sbjct: 776 IGEKGVNLSGGQKARVSLA 794
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 100 bits (251), Expect = 2e-23
Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 49/235 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-KTVSQASLRQAIGVVPQDTVLFNNSI 994
VG+SG+GKST+ RLL SG I +D + + + + + +V QD
Sbjct: 39 VGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDP------- 91
Query: 995 KFNIQYARINAS---EEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
Y+ +N + E + + S++ + E
Sbjct: 92 -----YSSLNPRRTVGRILSEPLRPHGLSK------------------SQQRIAELLDQV 128
Query: 1052 DIHERILS-FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+ L P +LSGG++QR+AIAR L+ P++++LDE TSALD +
Sbjct: 129 GLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177
Query: 1111 RNIQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
I + L + R T + ++H L+ + H D I VM G+IVE G EELL
Sbjct: 178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
Score = 31.1 bits (71), Expect = 2.7
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 578 KLSGGEKQRVAIA 590
+LSGG++QR+AIA
Sbjct: 141 ELSGGQRQRIAIA 153
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 99.5 bits (249), Expect = 4e-23
Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 48/234 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLFNN-S 993
+G SG+GKST++R L + +SG I +D +++ LR+ +G+V Q LF + +
Sbjct: 34 IGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLT 93
Query: 994 IKFNIQYARINA---SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
+ N+ A + S+ E +E A +L E+V
Sbjct: 94 VLENVTLAPVKVKKLSKAEAREKA------LELL-----------------EKV------ 124
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+ ++ ++P +LSGG++QRVAIAR L P+++L DE TSALD +
Sbjct: 125 -GLADKADAYPA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELV 172
Query: 1111 RNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ + + T IIV H + AD ++ M G+I+E G EE +
Sbjct: 173 GEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
Score = 33.6 bits (78), Expect = 0.43
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG++QRVAIA
Sbjct: 137 LSGGQQQRVAIA 148
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 99.6 bits (248), Expect = 4e-23
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 46/237 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYD------VESGDIFIDNQNI--KTVSQASLRQAIGVVPQDT 987
+G SG GK+T++R + R D VE G I+ Q+I + R+ +G+V Q
Sbjct: 35 IGPSGCGKTTLLRSINRMNDHIPGFRVE-GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93
Query: 988 VLFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
F SI N+ + RI+ + + K +RI+ EE +K+
Sbjct: 94 TPFPMSIYDNVAFGPRIHGVKSKHK--------LDRIV----------------EESLKK 129
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
AA D +++ + G +LSGG++QR+ IAR L P+++LLDE TSALD
Sbjct: 130 AA-----------LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178
Query: 1107 TKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ I+ L + + T +IV H + I AD I M+ GE++E G E++ER
Sbjct: 179 PIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 101 bits (254), Expect = 4e-23
Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 49/233 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G SG GKST++R++ + SG+I ID +++ + R I +V Q+ L+ + ++
Sbjct: 35 LGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP-PEKRG-IAMVFQNYALYPHMTV 92
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
NI + + A+I +R VKE A +
Sbjct: 93 YENIAFGLKLRGVPK-------AEIDKR---------------------VKEVAKLLGLE 124
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
+ P L+LSGG++QRVA+AR L++ P++ LLDE S LD K ++
Sbjct: 125 HLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMR 173
Query: 1115 SALNRVCASR--TTIIVAHRL---STIIHADEILVMHAGEIVERGRHEELLER 1162
S + ++ TTI V H T+ AD I+VM+ G I + G EL ER
Sbjct: 174 SEIKKLHERLGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELYER 224
Score = 34.9 bits (81), Expect = 0.24
Identities = 17/30 (56%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 575 RGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
+ L+LSGG++QRVA+A +LV KP VF D
Sbjct: 130 KPLQLSGGQRQRVALA-RALVRKPKVFLLD 158
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 98.6 bits (246), Expect = 8e-23
Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 43/231 (18%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFNNSIK 995
G++GAGK+T++R++ +SG + ID + TV S +R+ IGV+ + L
Sbjct: 35 GENGAGKTTLLRMIATLLIPDSGKVTIDGVD--TVRDPSFVRRKIGVLFGERGL------ 86
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
YAR+ A E + F I A E+ +
Sbjct: 87 ----YARLTA--------------RENLKYFARLNGLSRKEIKARIAELSKR-------- 120
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
L + D +VGE S G KQ+VAIAR L+ P I++LDE TS LD +T R
Sbjct: 121 --LQLLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHD 174
Query: 1116 ALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERNG 1164
+ ++ R I +H + + D ++V+H GE+V G E L R
Sbjct: 175 FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 269
Score = 98.7 bits (246), Expect = 1e-22
Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 43/230 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ--DTVLFNNS 993
VG +G+GKSTI +L+ V+SG+IF +NQ I + LR+ IG+V Q D +
Sbjct: 41 VGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
+K+++ + N A ++H R V EA D+
Sbjct: 101 VKYDVAFGLEN-------HAVPYDEMHRR---------------------VSEALKQVDM 132
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
ER P+ LSGG+KQRVAIA L P +++LDEATS LD +N+
Sbjct: 133 LERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181
Query: 1114 QSALNRVCASR--TTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLE 1161
+ +V + T I + H LS + AD ++VM+ G + + G E+ +
Sbjct: 182 LDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231
Score = 30.1 bits (68), Expect = 6.1
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG+KQRVAIA
Sbjct: 143 LSGGQKQRVAIA 154
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 97.8 bits (244), Expect = 1e-22
Identities = 68/235 (28%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST++R L R D V G + D Q+I K + LR+ +G+V Q
Sbjct: 33 IGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
F SI NI Y + ++ E + EE +K+AA
Sbjct: 93 PFPMSIYDNIAYG------PRLHGIKDKKELDEIV-----------------EESLKKAA 129
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
D ++ + L LSGG++QR+ IAR L P+++LLDE TSALD
Sbjct: 130 -----------LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178
Query: 1109 TERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
I+ + + T +IV H + +D + GE+VE G E++
Sbjct: 179 ATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine
and glutamine transporters. HisP and GlnQ are the
ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and is
accessible from both sides of the membrane, presumably by
its interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain structure
of the amino acid uptake systems is typical for
prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 96.4 bits (241), Expect = 2e-22
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 49/223 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIGVVPQDTVLFNN- 992
+G SG+GKST++R + + +SG I ID + + LRQ +G+V Q LF +
Sbjct: 32 IGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91
Query: 993 SIKFNIQYARINA---SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
++ NI A I S+ E +E A +L E+V
Sbjct: 92 TVLENITLAPIKVKGMSKAEAEERA------LELL-----------------EKVG---- 124
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ ++ ++P +LSGG++QRVAIAR L P+++L DE TSALD +
Sbjct: 125 ---LADKADAYPA-----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL 170
Query: 1110 ERNIQSALNRVCASRTT-IIVAHRLSTIIH-ADEILVMHAGEI 1150
+ + + T ++V H + AD ++ M G I
Sbjct: 171 VGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
Score = 32.9 bits (76), Expect = 0.74
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG++QRVAIA
Sbjct: 136 LSGGQQQRVAIA 147
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 97.0 bits (242), Expect = 3e-22
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 38/231 (16%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQDTVLFNN 992
+G SGAGKST++R + R + SG I ++ +I + LR+ IG++ Q L
Sbjct: 34 IGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93
Query: 993 -SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
++ N+ + R+ ++ SEE+ + A
Sbjct: 94 LTVLENVLHGRLGYK------------------PTWRSLLGRF-----SEEDKERAL--- 127
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
ER+ G + +R +LSGG++QRVAIAR L + P ++L DE ++LD KT +
Sbjct: 128 SALERV-----GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK 182
Query: 1112 NIQSALNRVCASR--TTIIVAHRLSTII-HADEILVMHAGEIVERGRHEEL 1159
+ L R+ T II H++ +AD I+ + AGEIV G EL
Sbjct: 183 QVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
Score = 31.9 bits (73), Expect = 1.8
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 575 RGLKLSGGEKQRVAIALNSLVDKP 598
R +LSGG++QRVAIA +L +P
Sbjct: 142 RADQLSGGQQQRVAIA-RALAQQP 164
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug
resistance-associated protein, subfamily C. This
subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was found
in the multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 94.1 bits (235), Expect = 1e-21
Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 52/217 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG G+GKS+++ L + SG + + I V Q+ + N +I+
Sbjct: 37 VGPVGSGKSSLLSALLGELEKLSGSVSVPGS-------------IAYVSQEPWIQNGTIR 83
Query: 996 FNIQY-ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
NI + + EE ++ +K A D+
Sbjct: 84 ENILFGKPFD--EERYEKV------------------------------IKACALEPDLE 111
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI- 1113
PDG T++GE+G+ LSGG+KQR+++AR + I LLD+ SA+D R+I
Sbjct: 112 ----ILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167
Query: 1114 QSALNRVCA-SRTTIIVAHRLSTIIHADEILVMHAGE 1149
++ + + ++T I+V H+L + HAD+I+V+ G
Sbjct: 168 ENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
Score = 40.5 bits (96), Expect = 0.002
Identities = 13/24 (54%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
Query: 568 GKNT-VGERGLKLSGGEKQRVAIA 590
G T +GE+G+ LSGG+KQR+++A
Sbjct: 116 GDLTEIGEKGINLSGGQKQRISLA 139
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 95.3 bits (237), Expect = 1e-21
Identities = 69/229 (30%), Positives = 103/229 (44%), Gaps = 45/229 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SGAGKST+I+L+ R D G I ID +IKT+ LR+ IG+V Q LF ++K
Sbjct: 35 VGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI+Y + E+ V + + I+ G + +YA +
Sbjct: 95 DNIEYGPMLKGEKNV-----DVEYYLSIV----GLNKEYATRDVKN-------------- 131
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
LSGGE QRV+IARTL P+++LLDE TSALD + I+
Sbjct: 132 -------------------LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172
Query: 1116 ALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
+ ++ T I + H + D ++ G +VE + +
Sbjct: 173 LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 94.2 bits (235), Expect = 2e-21
Identities = 57/233 (24%), Positives = 90/233 (38%), Gaps = 57/233 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---LRQAIGVVPQD-TVLFN 991
G SGAGKST+++L++ G I ++ ++ + LR+ IGVV QD +L +
Sbjct: 34 TGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPD 93
Query: 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
++ N+ + +I R V E
Sbjct: 94 RTVYENVALPLRVIGKPP-------REIRRR---------------------VSEVLDLV 125
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ + + P +LSGGE+QRVAIAR ++ P ++L DE T LD
Sbjct: 126 GLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW 174
Query: 1112 NIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNG 1164
I + TT+++A H E+V R RH L +G
Sbjct: 175 EIMRLFEEINRLGTTVLMA--------------THDLELVNRMRHRVLALEDG 213
Score = 37.6 bits (88), Expect = 0.020
Identities = 14/22 (63%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLV 600
LSGGE+QRVAIA ++V++P V
Sbjct: 138 LSGGEQQRVAIA-RAIVNQPAV 158
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 253
Score = 94.5 bits (236), Expect = 3e-21
Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 65/245 (26%)
Query: 937 GQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTVL 989
G SG GKST++R L R D+ G++ +D +NI V LR+ +G+V Q
Sbjct: 40 GPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99
Query: 990 FNNSIKFNIQYA-RINAS-----EEEVKEAATSADIHERILSFPDGYDTQYARINASEEE 1043
F SI N+ Y R++ +E V+ + A + + E
Sbjct: 100 FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWD---------------------E 138
Query: 1044 VKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103
VK+ +H+ L LSGG++QR+ IAR L P+++L+DE TS
Sbjct: 139 VKD-----RLHKS---------------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178
Query: 1104 ALDTKTERNIQSALNRVCASRTTIIVAH------RLSTIIHADEILVMHAGEIVERGRHE 1157
ALD + I+ + + T +IV H R+S D + GE+VE G +
Sbjct: 179 ALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVS-----DYTAFFYLGELVEFGPTD 233
Query: 1158 ELLER 1162
++
Sbjct: 234 KIFTN 238
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 96.4 bits (241), Expect = 3e-21
Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 62/235 (26%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQD------ 986
+G SGAGKST+IR + SG + +D Q++ +S+ LR+A IG++ Q
Sbjct: 37 IGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96
Query: 987 -TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
TV F+N + ++ A A+I R+ E+
Sbjct: 97 RTV-FDN-VALPLELAGTPK-----------AEIKARV------------------TELL 125
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
E +D +R Y Q LSGG+KQRVAIAR L P+++L DEATSAL
Sbjct: 126 ELVGLSDKADR-------YPAQ-------LSGGQKQRVAIARALASNPKVLLCDEATSAL 171
Query: 1106 DTKTERNIQSALNRVCASR----TTIIVAHRLSTIIH-ADEILVMHAGEIVERGR 1155
D T R+I L + +R T +++ H + + D + V+ AG +VE+G
Sbjct: 172 DPATTRSILELLKDI--NRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
Score = 33.2 bits (77), Expect = 0.84
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG+KQRVAIA
Sbjct: 141 LSGGQKQRVAIA 152
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of E.
coli and it has been proposed that they were necessary
for biosynthesis of the cytochrome bd quinol oxidase and
for periplasmic c-type cytochromes. CydCD were proposed
to determine a heterooligomeric complex important for
heme export into the periplasm or to be involved in the
maintenance of the proper redox state of the periplasmic
space. In Bacillus subtilis, the absence of CydCD does
not affect the presence of halo-cytochrome c in the
membrane and this observation suggests that CydCD
proteins are not involved in the export of heme in this
organism.
Length = 178
Score = 91.6 bits (228), Expect = 3e-21
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 1064 YDTQVGER-GLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122
+DT + G + SGGE+QR+A+AR LL+ IVLLDE T LD TER + S + V
Sbjct: 87 FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK 146
Query: 1123 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 1154
+T I + H L+ I H D+IL + G+I+ +G
Sbjct: 147 DKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
Score = 53.9 bits (130), Expect = 4e-08
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996
G+SG+GKST+++LL + G+I +D + + + +L I V+ Q LF+ +++
Sbjct: 35 GRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRPYLFDTTLRN 93
Query: 997 NI 998
N+
Sbjct: 94 NL 95
Score = 33.1 bits (76), Expect = 0.43
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 558 IVFTTMALYLGKNTVGER-GLKLSGGEKQRVAIALNSLVDKPLV 600
I YL T+ G + SGGE+QR+A+A L D P+V
Sbjct: 77 ISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIV 120
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type transporter
that associates with the bacterial inner membrane. The
FtsE/X transporter is thought to be involved in cell
division and is important for assembly or stability of
the septal ring.
Length = 214
Score = 92.9 bits (231), Expect = 4e-21
Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 57/233 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI---KTVSQASLRQAIGVVPQDTVLFNN 992
VG SGAGKST+++L+++ SG I ++ Q++ + + LR+ IGVV QD L +
Sbjct: 33 VGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92
Query: 993 SIKF-NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+ N+ +A + + +E + V A
Sbjct: 93 RNVYENVAFA-LEVTGVPPREIR---------------------------KRVPAALELV 124
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ + + P LSGGE+QRVAIAR ++ +P I++ DE T LD T
Sbjct: 125 GLSHKHRALPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173
Query: 1112 NIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNG 1164
I + L ++ + TT++VA HA E+V+ RH + G
Sbjct: 174 EIMNLLKKINKAGTTVVVA--------------THAKELVDTTRHRVIALERG 212
Score = 30.1 bits (68), Expect = 6.3
Identities = 13/20 (65%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 579 LSGGEKQRVAIALNSLVDKP 598
LSGGE+QRVAIA ++V+ P
Sbjct: 137 LSGGEQQRVAIA-RAIVNSP 155
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a 60-kDa
integral membrane protein sharing 37% identity with HlyB,
the ABC component of the alpha-hemolysin secretion
pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but contain
a C-terminal secretion signal. The Type I secretion
apparatus is made up of three components, an ABC
transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is TolC,
which is thought to interact with the MFP to form a
continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 91.1 bits (227), Expect = 5e-21
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRL 1133
LSGG++QR+ +AR L P+I++LDE S LD + ER + A+ + A T I++AHR
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 1134 STIIHADEILVMHAGEI 1150
T+ AD ILV+ G +
Sbjct: 157 ETLASADRILVLEDGRV 173
Score = 56.1 bits (136), Expect = 7e-09
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G SG+GKST+ RL+ SG + +D +I L +G +PQD LF+ SI
Sbjct: 34 IGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIA 93
Query: 996 FNI 998
NI
Sbjct: 94 ENI 96
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 92.9 bits (231), Expect = 8e-21
Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 44/236 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST +R L R D+ G+I +D +NI V LR+ +G+V Q
Sbjct: 38 IGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y R+N +++ A + ER+ E ++ A
Sbjct: 98 PFPKSIFENVAYGLRVNGVKDK-------AYLAERV-----------------ERSLRHA 133
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ +R+ E L LSGG++QR+ IAR L P+++L+DE SALD
Sbjct: 134 ALWDEVKDRL-----------HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ I+ ++ + A T IIV H + +D + G+++E G E++ R
Sbjct: 183 IATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase activity
and the residues required for homodimerization with PotA
and heterdimerization with PotB. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 232
Score = 92.3 bits (230), Expect = 8e-21
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 53/234 (22%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN---- 992
G SG GK+T++RL+ F SG+I +D ++I + R + V Q+ LF +
Sbjct: 33 GPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRP-VNTVFQNYALFPHLTVF 90
Query: 993 -SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+I F ++ ++ + E+KE V EA
Sbjct: 91 ENIAFGLRLKKL--PKAEIKE------------------------------RVAEALDLV 118
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ P +LSGG++QRVAIAR L+ P+++LLDE ALD K +
Sbjct: 119 QLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167
Query: 1112 NIQSALNRVCASR--TTIIVAHRLS-TIIHADEILVMHAGEIVERGRHEELLER 1162
++Q L R+ T + V H + +D I VM+ G+I + G EE+ E
Sbjct: 168 DMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
Score = 33.4 bits (77), Expect = 0.60
Identities = 14/23 (60%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
Query: 578 KLSGGEKQRVAIALNSLVDKPLV 600
+LSGG++QRVAIA +LV++P V
Sbjct: 130 QLSGGQQQRVAIA-RALVNEPKV 151
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model
describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 91.5 bits (228), Expect = 1e-20
Identities = 56/212 (26%), Positives = 87/212 (41%), Gaps = 56/212 (26%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQD------ 986
G SGAGK+T+++LL+ G + I +++ + LR+ IGVV QD
Sbjct: 34 TGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93
Query: 987 -TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
TV N ++ ++ + + V A + + +FP+
Sbjct: 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE----------------- 136
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
+LSGGE+QRVAIAR ++ +P ++L DE T L
Sbjct: 137 ----------------------------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 1106 DTKTERNIQSALNRVCASRTTIIVA-HRLSTI 1136
D I L R+ TT+IVA H LS +
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200
Score = 34.1 bits (79), Expect = 0.28
Identities = 13/20 (65%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 579 LSGGEKQRVAIALNSLVDKP 598
LSGGE+QRVAIA ++V+ P
Sbjct: 138 LSGGEQQRVAIA-RAIVNSP 156
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 92.2 bits (229), Expect = 1e-20
Identities = 73/244 (29%), Positives = 107/244 (43%), Gaps = 52/244 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNIKTVSQ--ASLRQAIGVVPQDTV 988
+G SG GKST++R R D+ GDI + +NI +LR+ IG+V Q
Sbjct: 38 IGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y RI+ K T I E+ L + A +EVK+
Sbjct: 98 PFPKSIYENVAYGPRIHG----EKNKKTLDTIVEKSL-----------KGAALWDEVKDR 142
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
+H+ LS LSGG++QR+ IARTL P+++L+DE SALD
Sbjct: 143 -----LHDSALS---------------LSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIHADEIL-VMHAGEIVERGR--------HEE 1158
I+ + + T IIV H + + M+ G+++E + HEE
Sbjct: 183 IATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEE 242
Query: 1159 LLER 1162
L E
Sbjct: 243 LTEN 246
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 94.3 bits (235), Expect = 1e-20
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 52/236 (22%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA-IGVVPQDTVLFNNS-- 993
G SGAGKST++R++ ++G I ++ + + VS ++R +G V Q LF +
Sbjct: 35 GPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTV 94
Query: 994 ---IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
I F ++ + SE E++ EE+
Sbjct: 95 ADNIAFGLKVRKERPSEAEIRARV---------------------------EELLRLVQL 127
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+ +R +P +LSGG++QRVA+AR L P+++LLDE ALD K
Sbjct: 128 EGLADR---YP-----------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173
Query: 1111 RNIQSALNRVCASR---TTIIVAHRLS-TIIHADEILVMHAGEIVERGRHEELLER 1162
+ ++ L R R TT+ V H + AD ++V++ G I + G +E+ +
Sbjct: 174 KELRRWL-RKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 92.3 bits (230), Expect = 2e-20
Identities = 59/267 (22%), Positives = 102/267 (38%), Gaps = 24/267 (8%)
Query: 588 AIALNSLVDKPLVFRWD-YVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIE 646
L+SL+D R L + +GVL + + + + I
Sbjct: 23 GRFLDSLIDGNGDERSSLISLAILLI---------AVGVLQGLLLQGSFYLGERLGQRIR 73
Query: 647 IELF----RHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAI 702
LF R + GL + + + GE+ + I + L L ++ V+
Sbjct: 74 KRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSLA-TVVGG 132
Query: 703 VFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFET 762
+ + +++ + L ++ S V+ + K RK A + + +SL T
Sbjct: 133 FIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRT 192
Query: 763 VKYYGAEEYEIKEYGKAIQTYQVAEYQ----NSLSLVFLNSLQNLIITGGLLAGSLLCVH 818
VK +G EEYE++ Y KA++ + A + LS + L L G+ L
Sbjct: 193 VKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFGAYL--- 249
Query: 819 EVVNNQTLTVGDYTLFVSYILQLYVPL 845
V + L+VG F+S LQL PL
Sbjct: 250 --VISGGLSVGTVFAFLSLGLQLSGPL 274
Score = 46.1 bits (110), Expect = 5e-05
Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 21/176 (11%)
Query: 392 VIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKPLVFRWDYVLIF 451
++I ILLLI+A L P+ + ++L + ++ + +LI
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFL-----------DSLIDGNGDERSSLISLAILLIA 49
Query: 452 VGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEV 511
VG G+L L + Q + + L R + GL + + + GE+
Sbjct: 50 VGV---------LQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGEL 100
Query: 512 LRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYL 567
+ I + L L ++ V+ + + +++ + L +
Sbjct: 101 TSRLTNDVSKIRDGLGDKLGLFFQSLA-TVVGGFIVMFYYGWKLTLVLLAILPLLI 155
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 271
Score = 92.4 bits (230), Expect = 2e-20
Identities = 64/237 (27%), Positives = 114/237 (48%), Gaps = 49/237 (20%)
Query: 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQDTV 988
Y+ +G +G+GKSTI ++L +SG+I ID T+S+ +L++ IG++ Q
Sbjct: 37 YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG---ITISKENLKEIRKKIGIIFQ--- 90
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASE--EEVKE 1046
N +F I A+ E+ DI + + ++ + + + +
Sbjct: 91 --NPDNQF------IGATVED--------DI---------AFGLENKKVPPKKMKDIIDD 125
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
A + + + P LSGG+KQRVAIA L P+I++ DE+TS LD
Sbjct: 126 LAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Query: 1107 TKTERNIQSALN--RVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLE 1161
K +R I+ + R +T I + H + I AD+++V G+++ +G+ +E+L
Sbjct: 175 PKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231
Score = 32.7 bits (75), Expect = 0.93
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 577 LKLSGGEKQRVAIA 590
LSGG+KQRVAIA
Sbjct: 141 QNLSGGQKQRVAIA 154
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 235
Score = 91.0 bits (227), Expect = 2e-20
Identities = 71/236 (30%), Positives = 110/236 (46%), Gaps = 55/236 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVLFNN 992
+G SG+GKST++RL+ +SG++ ID ++I +S+A LR+ +G++ Q LF
Sbjct: 32 IGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF-- 89
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS-- 1050
S + E + +FP T+ SEEE++E
Sbjct: 90 ----------------------DSLTVFENV-AFPLREHTRL-----SEEEIREIVLEKL 121
Query: 1051 --ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD-- 1106
+ +P +LSGG K+RVA+AR L P+++L DE T+ LD
Sbjct: 122 EAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170
Query: 1107 --TKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEEL 1159
+ I+S L + T+I+V H L T AD I V++ G+IV G EEL
Sbjct: 171 ASGVIDDLIRS-LKKELGL-TSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the
osmoprotectant transporter. OpuCA is a the ATP binding
component of a bacterial solute transporter that serves a
protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition, to
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 242
Score = 91.2 bits (227), Expect = 3e-20
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G SG+GK+T ++++ R + SG+IFID ++I+ LR+ IG V Q LF + ++
Sbjct: 33 IGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
+ NI A + + KE E E A +
Sbjct: 93 EENI--ALVPKLLKWPKEKI--------------------------RERADELL--ALVG 122
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
F D Y + LSGG++QRV +AR L P ++L+DE ALD T +Q
Sbjct: 123 LDPAEFADRYPHE-------LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175
Query: 1115 SALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
R+ +T + V H + AD I +M GEIV+ G +E+L
Sbjct: 176 EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 91.2 bits (227), Expect = 3e-20
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 40/232 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQDTVLFNN 992
+G SGAGKST++R L D SG+I + I + LR+ IG++ Q L
Sbjct: 36 IGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINA--SEEEVKEAATS 1050
+ E +L GY + + + S+E+ +A
Sbjct: 96 L------------------------SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQAL-- 129
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
D ER+ G + +R LSGG++QRVAIAR L++ P+I+L DE ++LD ++
Sbjct: 130 -DALERV-----GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESA 183
Query: 1111 RNIQSALNRVCASR--TTIIVAHRLSTII-HADEILVMHAGEIVERGRHEEL 1159
+ + L + T I+ H++ +AD I+ + AG IV G EL
Sbjct: 184 KKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
Score = 31.5 bits (72), Expect = 2.6
Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 578 KLSGGEKQRVAIALNSLVDKP 598
LSGG++QRVAIA +LV +P
Sbjct: 147 TLSGGQQQRVAIA-RALVQQP 166
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 93.6 bits (233), Expect = 4e-20
Identities = 71/239 (29%), Positives = 106/239 (44%), Gaps = 61/239 (25%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR-----------QAIGVVPQ 985
G SG+GKST++RLL R + G+I +D ++I +S A LR Q+ ++P
Sbjct: 61 GLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120
Query: 986 DTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERI-LSFPDGYDTQYARINASEEEV 1044
TVL N + F ++ + +E E + E + L +GY +Y
Sbjct: 121 RTVLEN--VAFGLEVQGVPKAEREER-------ALEALELVGLEGYADKY---------- 161
Query: 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
+E LSGG +QRV +AR L P I+L+DEA SA
Sbjct: 162 --------PNE-------------------LSGGMQQRVGLARALANDPDILLMDEAFSA 194
Query: 1105 LDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
LD +Q L + A +T + + H L + D I +M GEIV+ G EE+L
Sbjct: 195 LDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an ABC
transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 89.7 bits (223), Expect = 6e-20
Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 43/232 (18%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIK 995
G +GAGKST+ LL R Y + G I + +++ +A+L + +GVV Q L + S++
Sbjct: 34 GPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVR 92
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N++Y A +H G AR +E + E
Sbjct: 93 QNLRY---------------HAALH--------GLSRAEARARIAEL-----LARLGLAE 124
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
R D +V E L+GG ++RV IAR LL P ++LLDE T LD + I +
Sbjct: 125 RA-------DDKVRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITA 173
Query: 1116 ALNRVCASRTTIIV--AHRLSTIIHADEILVMHAGEIVERGRHEELLERNGV 1165
+ + + ++ H + I D ++V+H G ++ G EL G
Sbjct: 174 HVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGG 225
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 157
Score = 87.3 bits (217), Expect = 8e-20
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 1133
LSGG++QRVA+AR LL P ++LLDE TS LD + + L + RT IIV H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 1134 STIIHA-DEILVMHAGE 1149
A D ++V+ G+
Sbjct: 141 ELAELAADRVIVLKDGK 157
Score = 59.2 bits (144), Expect = 5e-10
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 985
VG +G+GKST++R + SG+I ID ++I + LR+ IG VPQ
Sbjct: 31 VGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
Score = 31.1 bits (71), Expect = 1.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSGG++QRVA+A L++ L+
Sbjct: 81 LSGGQRQRVALARALLLNPDLLL 103
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit;
Provisional.
Length = 400
Score = 92.4 bits (229), Expect = 1e-19
Identities = 84/287 (29%), Positives = 131/287 (45%), Gaps = 68/287 (23%)
Query: 890 KRIENKIEENMEEDQFGFRKGK--GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTII 947
+R IE+ + ++Q + G G +DA +A+E ++ ++ G SG+GKST++
Sbjct: 19 QRAFKYIEQGLSKEQILEKTGLSLGVKDA-----SLAIEEGEIFVIM--GLSGSGKSTMV 71
Query: 948 RLLFRFYDVESGDIFIDNQNIKTVSQASLR-----------QAIGVVPQDTVLFNNSIKF 996
RLL R + G + ID +I +S A LR Q+ ++P TVL N + F
Sbjct: 72 RLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTA--F 129
Query: 997 NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056
++ A INA EE +E A A + ++ Y
Sbjct: 130 GMELAGINA--EERREKALDALRQVGLENYAHSY-------------------------- 161
Query: 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA 1116
PD +LSGG +QRV +AR L P I+L+DEA SALD +Q
Sbjct: 162 ----PD-----------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206
Query: 1117 LNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
L ++ A RT + ++H L + D I +M GE+V+ G +E+L
Sbjct: 207 LVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 90.1 bits (224), Expect = 1e-19
Identities = 73/238 (30%), Positives = 108/238 (45%), Gaps = 54/238 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST++R R D V+ G+I +D QNI K V A LR+ +G+V Q
Sbjct: 57 IGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y R+ + + ER L R A +EVK+
Sbjct: 117 PFPKSIYENVVYGLRLQG----INNRRVLDEAVERSL-----------RGAALWDEVKD- 160
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
++ E LSGG++QR+ IAR + P+++LLDE TSALD
Sbjct: 161 -------------------RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 1108 KTERNIQSALNRVCASRTTIIVAH------RLSTIIHADEILVMHAGEIVERGRHEEL 1159
+ I+ + + + T +IV H R+S D M+ G++VE G + L
Sbjct: 202 ISTLKIEELITELKSKYTIVIVTHNMQQAARVS-----DYTAFMYMGKLVEYGDTDTL 254
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 263
Score = 89.2 bits (222), Expect = 2e-19
Identities = 60/247 (24%), Positives = 113/247 (45%), Gaps = 52/247 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVLFNN 992
+G SG+GKST++RL+ + G+I ID ++I +S+ +R+ +GV+ Q LF++
Sbjct: 40 LGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSS 99
Query: 993 -SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
++ N+ + ++ I E +L +++
Sbjct: 100 LTVFENVAFPLREHTKLPESL------IRELVL-----------------MKLELVGLRG 136
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD----T 1107
+ +P +LSGG ++RVA+AR + P+++ LDE TS LD
Sbjct: 137 AAADL---YPS-----------ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERNGVY 1166
+ I+ + + T I+V H L +++ AD + V+ G+++ G EELL +
Sbjct: 183 VIDELIRELNDALGL--TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASD--- 237
Query: 1167 ASMWIQQ 1173
W++Q
Sbjct: 238 -DPWVRQ 243
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 88.9 bits (220), Expect = 2e-19
Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 46/235 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST IR L R D+ G I++D +I V LR+ +G+V Q
Sbjct: 35 IGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y RI+ ++E I ER+ EE +K A
Sbjct: 95 PFPKSIFDNVAYGLRIHGEDDEDF-------IEERV-----------------EESLKAA 130
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ +++ + L LSGG++QR+ IART+ +P+++L+DE SALD
Sbjct: 131 ALWDEVKDKL-----------DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP 179
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRL--STIIHADEILVMHAGEIVERGRHEELL 1160
+ I+ ++++ T +IV H + +T + ++ GEI+E G +++
Sbjct: 180 ISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLN-GEIIESGLTDQIF 233
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments of
photoreceptor cells, and therefore, performs a crucial
step in the visual cycle. The ABCA genes are not present
in yeast. However, evolutionary studies of ABCA genes
indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 86.8 bits (216), Expect = 4e-19
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 42/218 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +GAGK+T +++L SG +I+ +I+T + + RQ++G PQ LF+
Sbjct: 34 LGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSLGYCPQFDALFDE--- 89
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINA-SEEEVKEAATSADIH 1054
V+E H R YAR+ + E+KE ++
Sbjct: 90 LT------------VRE-------HLRF----------YARLKGLPKSEIKE---EVELL 117
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
R+L D + + LSGG K+++++A L+ P ++LLDE TS LD + R I
Sbjct: 118 LRVLGLTDKANKRART----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173
Query: 1115 SALNRVCASRTTIIVAHRLSTI-IHADEILVMHAGEIV 1151
+ V R+ I+ H + D I +M G++
Sbjct: 174 DLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 87.8 bits (218), Expect = 5e-19
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 44/234 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYD-VES----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST +R L R D + S G++ +D Q+I + LR+ +G+V Q
Sbjct: 35 IGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y R + +K+ +I E+ L K A
Sbjct: 95 PFPMSIYDNVAYGPRTHG----IKDKKKLDEIVEKSL--------------------KGA 130
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ +R+ + L LSGG++QR+ IAR L P+++L+DE TSALD
Sbjct: 131 ALWDEVKDRL-----------KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP 179
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ I+ + + T +IV H + +D+ GEIVE G +L
Sbjct: 180 ISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 211
Score = 86.5 bits (215), Expect = 5e-19
Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 42/221 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +GAGK+T++R+L SG I ID Q++ Q LR+ IG +PQ+
Sbjct: 31 LGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK-LRRRIGYLPQE--------- 80
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
F + Y E + A I + AR++ E V ++ +
Sbjct: 81 FGV-YPNFTV-REFLDYIAWLKGIPSK---------EVKARVDEVLELV-------NLGD 122
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN-IQ 1114
R ++G LSGG ++RV IA+ L+ P I+++DE T+ LD + ER +
Sbjct: 123 R-------AKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE-ERIRFR 170
Query: 1115 SALNRVCASRTTIIVAHRLSTI-IHADEILVMHAGEIVERG 1154
+ L+ + R I+ H + + +++ V++ G++V G
Sbjct: 171 NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from the
environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 85.7 bits (213), Expect = 5e-19
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 1072 GLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIV 1129
L LSGG++QRVA+AR L P ++LLDE TSALD T R +++ L + A T ++V
Sbjct: 98 ALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLV 157
Query: 1130 AHRLSTIIH-ADEILVMHAGE 1149
H L AD ++V+ G+
Sbjct: 158 THDLDEAARLADRVVVLRDGK 178
Score = 54.1 bits (131), Expect = 4e-08
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS--LRQAIGVVPQDTVLFNN- 992
+G SG+GKST++R + + +SG I ID +++ + LR+ IG+V QD LF +
Sbjct: 32 LGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL 91
Query: 993 SIKFNIQYA 1001
++ NI
Sbjct: 92 TVLENIALG 100
Score = 33.7 bits (78), Expect = 0.29
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 558 IVFTTMALYLGKNTVGE-RGLKLSGGEKQRVAIA 590
+VF AL+ TV E L LSGG++QRVA+A
Sbjct: 80 MVFQDFALFPHL-TVLENIALGLSGGQQQRVALA 112
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 87.8 bits (218), Expect = 5e-19
Identities = 68/239 (28%), Positives = 107/239 (44%), Gaps = 56/239 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTVSQ--ASLRQAIGVVPQDTV 988
+G SG GKST++R R Y++ G+I +D +NI T Q A LR +G+V Q
Sbjct: 45 IGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104
Query: 989 LFNNSIKFNIQYA-----RINASE--EEVKEAATSADIHERILSFPDGYDTQYARINASE 1041
F SI NI + +++ +E E V+ A T A A
Sbjct: 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKA---------------------ALW 143
Query: 1042 EEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101
EVK+ ++ + G LSGG++QR+ IAR + P+++LLDE
Sbjct: 144 NEVKD--------------------KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP 183
Query: 1102 TSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEEL 1159
SALD + I+ + + T +IV H + +D M+ GE++E G + +
Sbjct: 184 CSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein (see
TIGR01654). This model represents a small clade within
the ABC transporters that regularly are found adjacent to
these bacteriocin system gene pairs and are likely serve
as export proteins [Cellular processes, Toxin production
and resistance, Transport and binding proteins, Unknown
substrate].
Length = 206
Score = 86.5 bits (215), Expect = 5e-19
Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 53/218 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQAS--LRQAIGVVPQDTVLFN 991
+G+SG+GKST++ ++ +SG ++++ Q + +AS R+ +G + Q+ L
Sbjct: 30 IGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALIE 89
Query: 992 N-SIKFNIQ----YARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
N +++ N+ Y +++ E+ K+ +E +++
Sbjct: 90 NETVEENLDLGLKYKKLSKKEKREKK----------------------------KEALEK 121
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
+ + ++I LSGGE+QRVA+AR +LK P ++L DE T +LD
Sbjct: 122 VGLNLKLKQKIYE---------------LSGGEQQRVALARAILKPPPLILADEPTGSLD 166
Query: 1107 TKT-ERNIQSALNRVCASRTTIIVAHRLSTIIHADEIL 1143
K + + L +T IIV H AD ++
Sbjct: 167 PKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVI 204
Score = 33.0 bits (76), Expect = 0.71
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSGGE+QRVA+A L PL+
Sbjct: 135 LSGGEQQRVALARAILKPPPLIL 157
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 88.3 bits (219), Expect = 1e-18
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 47/231 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G SG GK+T++RLL F +SG I +D +++ V + I +V Q LF + ++
Sbjct: 2 LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV--PPHLRHINMVFQSYALFPHMTV 59
Query: 995 KFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
+ N+ + ++ +I R V EA +
Sbjct: 60 EENVAFGLKMRKVPRA--------EIKPR---------------------VLEALRLVQL 90
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
E P +LSGG++QRVA+AR L+ P+I+LLDE SALD K +
Sbjct: 91 EEFADRKP-----------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQM 139
Query: 1114 QSALNRVCASR--TTIIVAHRLS-TIIHADEILVMHAGEIVERGRHEELLE 1161
Q L + T + V H + +D I +M G+I + G EE+ E
Sbjct: 140 QLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190
Score = 31.7 bits (72), Expect = 2.5
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 578 KLSGGEKQRVAIALNSLVDKPLVFRWD 604
+LSGG++QRVA+A +LV KP + D
Sbjct: 100 QLSGGQQQRVALA-RALVFKPKILLLD 125
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 88.0 bits (218), Expect = 1e-18
Identities = 66/240 (27%), Positives = 109/240 (45%), Gaps = 41/240 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYD------------VESGDIFIDNQNIKTVSQASLRQAIGVV 983
+G SG GKST +R L R D ++ DI+ D N+ LR+ +G+V
Sbjct: 77 IGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL-----VELRKRVGMV 131
Query: 984 PQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE 1043
Q F SI+ NI Y DI+ +L+ G D + A E
Sbjct: 132 FQSPNPFPKSIRENISYG-----------PRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 1044 VKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103
+++AA ++++R+ + L LSGG++QR+ IAR L P+++L+DE S
Sbjct: 181 LRQAALWDEVNDRL-----------DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 1104 ALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILV-MHAGEIVERGRHEELLE 1161
ALD I+ + + T ++V H + +D+ V + GE+VE +++ E
Sbjct: 230 ALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE 289
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the
Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding protein
and a single integral membrane protein.
Length = 218
Score = 85.5 bits (212), Expect = 1e-18
Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 46/251 (18%)
Query: 907 FRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 966
FR K T A+ + ++ L G +GAGK+T +R+L + ++G +D
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLL---GPNGAGKTTTLRMLAGLLEPDAGFATVDG- 66
Query: 967 NIKTVSQ-ASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILS 1025
V + A R+ +G V T L Y R+ A E +
Sbjct: 67 -FDVVKEPAEARRRLGFVSDSTGL----------YDRLTA--------------RENLEY 101
Query: 1026 FPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAI 1085
F Y + + A EE+ + ++ +R R S G +Q+VAI
Sbjct: 102 FAGLYGLKGDELTARLEELADRLGMEELLDR--------------RVGGFSTGMRQKVAI 147
Query: 1086 ARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRLSTIIH-ADEIL 1143
AR L+ P ++LLDE T+ LD R ++ + ++ A I+ + H + + D ++
Sbjct: 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVV 207
Query: 1144 VMHAGEIVERG 1154
V+H G +V G
Sbjct: 208 VLHRGRVVYEG 218
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 220
Score = 85.6 bits (213), Expect = 1e-18
Identities = 63/230 (27%), Positives = 93/230 (40%), Gaps = 62/230 (26%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD-------TV 988
VG SG GKST++R++ SG++ +D + + G V Q TV
Sbjct: 36 VGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPD-----RGYVFQQDALLPWLTV 90
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
L N ++ +Q + E +E A E +L E V
Sbjct: 91 LDNVALGLELQ----GVPKAEARERA------EELL-----------------ELV---- 119
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
+ F + Y Q LSGG +QRVA+AR L P ++LLDE SALD
Sbjct: 120 -------GLSGFENAYPHQ-------LSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165
Query: 1109 TERNIQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHA--GEIVER 1153
T +Q L + T ++V H + + AD ++V+ A G IV
Sbjct: 166 TREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215
Score = 30.1 bits (69), Expect = 6.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 579 LSGGEKQRVAIA 590
LSGG +QRVA+A
Sbjct: 132 LSGGMRQRVALA 143
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 86.2 bits (213), Expect = 1e-18
Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 37/230 (16%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVES---GDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 992
+G SG GKST +R R D + G + I+ +++K +LR+ +G+V Q +F
Sbjct: 34 IGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
SI NI YA +H I N EEE A D
Sbjct: 94 SIYENISYA---------------PKLHGMIK-------------NKDEEE----ALVVD 121
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+++ F + D ++ + L LSGG++QR+ IAR L P+++LLDE TSALD +
Sbjct: 122 CLQKVGLFEEVKD-KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180
Query: 1113 IQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
I+ L + + + I+V H + AD H GE++E G +E E
Sbjct: 181 IEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 86.8 bits (215), Expect = 1e-18
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 46/235 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYD-VES----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKSTI+R R D + G + +N+ V +R+ IG+V Q
Sbjct: 42 IGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101
Query: 989 LFNNSIKFNIQY-ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI NI Y ARIN + ++ E + ER L R A +EVK+
Sbjct: 102 PFPKSIYDNIAYGARINGYKGDMDE------LVERSL-----------RQAALWDEVKD- 143
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
++ + GL LSGG++QR+ IAR + P+++L+DE SALD
Sbjct: 144 -------------------KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP 184
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG-RHEELLE 1161
+ I+ ++ + T IIV H + ++ E+ E G R+ L+E
Sbjct: 185 ISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily
C. The cystic fibrosis transmembrane regulator (CFTR),
the product of the gene mutated in patients with cystic
fibrosis, has adapted the ABC transporter structural
motif to form a tightly regulated anion channel at the
apical surface of many epithelia. Use of the term
assembly of a functional ion channel implies the coming
together of subunits or at least smaller not-yet
functional components of the active whole. In fact, on
the basis of current knowledge only the CFTR polypeptide
itself is required to form an ATP- and protein kinase
A-dependent low-conductance chloride channel of the type
present in the apical membrane of many epithelial cells.
CFTR displays the typical organization (IM-ABC)2 and
carries a characteristic hydrophilic R-domain that
separates IM1-ABC1 from IM2-ABC2.
Length = 275
Score = 86.8 bits (215), Expect = 1e-18
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 36/215 (16%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G++G+GKST++ R + E GDI ID + +V R+A GV+PQ +F+ + +
Sbjct: 36 LGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFR 94
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ D Y S+EE+ + A +
Sbjct: 95 KNL-----------------------------DPYGKW------SDEEIWKVAEEVGLKS 119
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I FP D + + G LS G KQ + +AR++L +I+LLDE ++ LD T + I+
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEI 1150
L + A T I+ HR+ ++ LV+ ++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKV 214
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 86.9 bits (215), Expect = 2e-18
Identities = 67/236 (28%), Positives = 107/236 (45%), Gaps = 44/236 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST +R + R D+ +G + D ++I K + LR+ IG+V Q
Sbjct: 71 IGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI NI Y R++ + + +I E+ L ++A
Sbjct: 131 PFPKSIFDNIAYGPRLHG----INDKKQLEEIVEKSL--------------------RKA 166
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ +R+ + L LSGG++QR+ +ARTL P+I+LLDE TSALD
Sbjct: 167 ALWDEVSDRL-----------DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDP 215
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
K I+ + + S T +IV H + +D + + G +VE +L
Sbjct: 216 KATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 85.8 bits (212), Expect = 2e-18
Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 44/226 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST +RL R D+ G+I ID +NI K V LR+ +G+V Q
Sbjct: 35 IGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y R+N ++ A I +R+ EE +K A
Sbjct: 95 PFPKSIFENVAYGLRVNGVKDN-------AFIRQRV-----------------EETLKGA 130
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ +++ E LSGG++QR+ IAR + +P ++L+DE SALD
Sbjct: 131 ALWDEVKDKL-----------KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP 179
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE 1152
+ ++ ++ + T +IV H + +D+ + GE+VE
Sbjct: 180 ISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 84.8 bits (211), Expect = 2e-18
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 46/231 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-KTVSQASLRQAIGVVPQDTVLFNN-S 993
+G++GAGK+T+++ + SG I D ++I R IG VP+ +F +
Sbjct: 32 LGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILS-FPDGYDTQYARINASEEEVKEAATSAD 1052
++ N+ + K A + ER+ FP
Sbjct: 92 VEENLLLGAYARRRAKRK-----ARL-ERVYELFPR------------------------ 121
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ ER G LSGGE+Q +AIAR L+ P+++LLDE + L K
Sbjct: 122 LKER-------RKQLAGT----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 170
Query: 1113 IQSALNRVCASRTTII-VAHRLSTII-HADEILVMHAGEIVERGRHEELLE 1161
I A+ + TI+ V + AD V+ G +V G ELL
Sbjct: 171 IFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 89.6 bits (223), Expect = 3e-18
Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 42/234 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---LRQAIGVVPQDTVLFNN 992
VG+SG+GKST+ L R G+I D Q+I +S+ LR+ + VV QD
Sbjct: 319 VGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP---YG 374
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
S+ + +I EE ++ +HE LS + ++ V EA
Sbjct: 375 SLSPRMTVGQI--IEEGLR-------VHEPKLSAAE-----------RDQRVIEALEEVG 414
Query: 1053 IHERILS-FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ + +P + SGG++QR+AIAR L+ P+++LLDE TSALD +
Sbjct: 415 LDPATRNRYPH-----------EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQA 463
Query: 1112 NIQSALNRVCASR--TTIIVAHRLSTI-IHADEILVMHAGEIVERGRHEELLER 1162
+ L + + + ++H L+ + ++VM G+IVE+G E +
Sbjct: 464 QVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
Score = 71.9 bits (177), Expect = 8e-13
Identities = 76/280 (27%), Positives = 105/280 (37%), Gaps = 70/280 (25%)
Query: 936 VGQSGAGKS----TIIRLLFRFYDVE-SGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990
VG+SG+GKS +I+ LL SG I D +++ S+ LR G
Sbjct: 42 VGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRG--------- 92
Query: 991 NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
N I Q E TS + I Q A + + AA
Sbjct: 93 -NKIGMIFQ------------EPMTSLNPLHTI-------GKQLAEVLRLHRGLSRAAAR 132
Query: 1051 ADIHERILSFPDGYDTQVG----ERGLK-----LSGGEKQRVAIARTLLKAPQIVLLDEA 1101
A R L + VG E+ L LSGG++QRV IA L P +++ DE
Sbjct: 133 A----RALELLE----LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEP 184
Query: 1102 TSALDTKTE-------RNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVER 1153
T+ALD + + +Q+ L + + H L + AD + VM GEIVE
Sbjct: 185 TTALDVTVQAQILDLLKELQAELG-----MAILFITHDLGIVRKFADRVYVMQHGEIVET 239
Query: 1154 GRHEELLER-NGVYASMWIQQNTKQSEPSSDESPPSSTAQ 1192
G E L Y + +EPS D P A
Sbjct: 240 GTTETLFAAPQHPYTRKLL-----AAEPSGDPPPLPEDAP 274
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 85.8 bits (212), Expect = 3e-18
Identities = 68/235 (28%), Positives = 105/235 (44%), Gaps = 42/235 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST +R + R D+ G+I + NI ++ +LR+ IG+V Q
Sbjct: 53 IGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
F SI NI +A +K A ER S D EE + +AA
Sbjct: 113 PFPKSIYNNITHA--------LKYAG------ERRKSVLD---------EIVEESLTKAA 149
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
++ +R+ L LSGG++QR+ IARTL P ++LLDE SALD
Sbjct: 150 LWDEVKDRL-----------HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPI 198
Query: 1109 TERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ I+ + + + IIV H + + +D G++VE + E++
Sbjct: 199 SNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain
of the molybdenum transport system. ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 214
Score = 84.3 bits (209), Expect = 4e-18
Identities = 58/231 (25%), Positives = 90/231 (38%), Gaps = 57/231 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFID-------NQNIKTVSQASLRQAIGVVPQDTV 988
G SGAGKST++R + + G I ++ + I Q ++ IG+V Q
Sbjct: 29 FGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQ---QRKIGLVFQQYA 85
Query: 989 LFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
LF + +++ N+ + R E+ +
Sbjct: 86 LFPHLNVRENLAFG--------------------------------LKRKRNREDRISVD 113
Query: 1048 ATSADIHERILSFPDGYDTQVGERG-LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
+ + R +LSGGEKQRVA+AR L P+++LLDE SALD
Sbjct: 114 ELLDLLGL----------DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163
Query: 1107 TKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERG 1154
+ L ++ + I V H LS + AD I+VM G + G
Sbjct: 164 RALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
Score = 33.8 bits (78), Expect = 0.38
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 558 IVFTTMALYLGKNTVGERG-LKLSGGEKQRVAI--ALNS-----LVDKPL 599
I + LG + + R +LSGGEKQRVA+ AL + L+D+P
Sbjct: 110 ISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF 159
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases of
this group of transporters are very similar to members of
iron-siderophore uptake family suggesting that they share
a common ancestor. The best characterized metal-type ABC
transporters are the YfeABCD system of Y. pestis, the
SitABCD system of Salmonella enterica serovar
Typhimurium, and the SitABCD transporter of Shigella
flexneri. Moreover other uncharacterized homologs of
these metal-type transporters are mainly found in
pathogens like Haemophilus or enteroinvasive E. coli
isolates.
Length = 213
Score = 84.1 bits (209), Expect = 4e-18
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 39/212 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +GAGKST+++ + SG I + + ++ R+ IG VPQ +
Sbjct: 31 VGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE-----RKRIGYVPQ---------R 76
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+I S +V H+ + A+++ + E V +++ +
Sbjct: 77 RSIDRDF-PISVRDV--VLMGLYGHKGLFRRLS--KADKAKVDEALERVG----LSELAD 127
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
R Q+GE LSGG++QRV +AR L++ P ++LLDE + +D KT+ +I
Sbjct: 128 R----------QIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173
Query: 1116 ALNRVCASRTTII-VAHRLSTII-HADEILVM 1145
L + TI+ V H L ++ + D +L++
Sbjct: 174 LLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 83.8 bits (207), Expect = 5e-18
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 48/230 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
G SG GKST+++++ SG + + +++ T+ + RQ + Q LF ++++
Sbjct: 35 TGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94
Query: 996 FNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
N+ + +I + A D+ R +
Sbjct: 95 DNLIFPWQIRNRRPDRAAAL---DLLAR----------------------------FALP 123
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
+ IL+ + +LSGGEKQR+A+ R L P+I+LLDE TSALD +RNI+
Sbjct: 124 DSILT----------KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173
Query: 1115 SALNRVCA--SRTTIIVAH-RLSTIIHADEILVM---HAGEIVERGRHEE 1158
++R + + + H + I HAD+++ + HAGE+ E +
Sbjct: 174 EMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEMQEARQELA 223
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 83.7 bits (207), Expect = 8e-18
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 55/235 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR-QAIGVVPQDTVLFNN-- 992
+G SG+GKST++R++ +SG I ++ Q+ ++ R + IG V Q LF +
Sbjct: 32 LGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQD---ATRVHARDRKIGFVFQHYALFKHLT 88
Query: 993 ---SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
+I F ++ + A+I A EE+ E
Sbjct: 89 VRDNIAFGLEIRKHPK-----------------------------AKIKARVEELLELV- 118
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
++ D Y Q LSGG++QRVA+AR L PQ++LLDE ALD K
Sbjct: 119 ------QLEGLGDRYPNQ-------LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165
Query: 1110 ERNIQSALNRVC--ASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
+ ++S L ++ TT+ V H + AD I+VM G+I + G +E+ +
Sbjct: 166 RKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 352
Score = 86.2 bits (214), Expect = 8e-18
Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 53/234 (22%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI----KTVSQASLRQAIGVVPQDTVLFNN 992
G SG+GK+++I ++ + G I ++ + + K + ++ IG V QD LF +
Sbjct: 31 GPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH 90
Query: 993 -SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+++ N++Y + + + I + +P
Sbjct: 91 YTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP------------------------ 126
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
LSGGEKQRVAI R LL AP+++L+DE ++LD +R
Sbjct: 127 ---------------------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165
Query: 1112 NIQSALNRVC-ASRTTII-VAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
I L R+ I+ V+H L ++ AD ++V+ G++ G EE+
Sbjct: 166 EILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
Score = 34.6 bits (80), Expect = 0.28
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 7/29 (24%)
Query: 578 KLSGGEKQRVAI--ALNS-----LVDKPL 599
LSGGEKQRVAI AL + L+D+PL
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPL 156
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 84.9 bits (210), Expect = 9e-18
Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 49/237 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYD------VESGDIFIDNQNI--KTVSQASLRQAIGVVPQDT 987
+G SG GKST +R + R D VE G++ +N+ V +LR+ IG+V Q
Sbjct: 71 IGPSGCGKSTFLRCINRMNDLIDAARVE-GELTFRGKNVYDADVDPVALRRRIGMVFQKP 129
Query: 988 VLFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
F SI N+ Y +I + DI ER+ EE ++
Sbjct: 130 NPFPKSIYDNVAYGLKIQGYDG---------DIDERV-----------------EESLRR 163
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
AA D Q+ GL LSGG++QR+ IAR + P+++L+DE SALD
Sbjct: 164 AA-----------LWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 1107 TKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILV-MHAGEIVERGRHEELLE 1161
I+ + + T +IV H + +D+ V + GE+VE +++ E
Sbjct: 213 PVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 287
Score = 84.7 bits (210), Expect = 1e-17
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 54/235 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQASLRQAIGVVPQ--DTVLFN 991
+G +G+GKST+I+ L SG I ID +I K V + +R+ +G+V Q + LF
Sbjct: 39 IGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98
Query: 992 NSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
+I+ +I + IN SEEE++ R+ + V
Sbjct: 99 ETIEKDIAFGPINLGLSEEEIEN-----------------------RVKRAMNIVG---- 131
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
L + D D E LSGG+K+RVAIA + P+I++LDE T+ LD K
Sbjct: 132 --------LDYEDYKDKSPFE----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
Query: 1110 ERNIQSALNRVCASR-----TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEE 1158
I LN++ T I+V+H + + AD I+VM+ G+ +G E
Sbjct: 180 RDEI---LNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 83.6 bits (206), Expect = 1e-17
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 44/236 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESG-----DIFIDNQNIKT--VSQASLRQAIGVVPQDTV 988
+G SG GKST++R L R D+ SG + +DN+NI + + +LR+ +G+V Q
Sbjct: 36 IGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARIN-ASEEEVKEA 1047
F SI N+ + R+L T +R++ E+ +++A
Sbjct: 96 PFPKSIFDNVAFG-------------------PRMLGT-----TAQSRLDEVVEKSLRQA 131
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ + + + GL LSGG++QR+ IAR L P+++L+DE SALD
Sbjct: 132 ALWDEVKDNL-----------HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIHA-DEILVMHAGEIVERGRHEELLER 1162
+ I+ + + + T IV H + A D + G++VE GR E+ R
Sbjct: 181 VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein.
This model represents the ATP-binding cassette (ABC)
protein of the three subunit molybdate ABC transporter.
The three proteins of this complex are homologous to
proteins of the sulfate ABC transporter. Molybdenum may
be used in nitrogenases of nitrogen-fixing bacteria and
in molybdopterin cofactors. In some cases, molybdate may
be transported by a sulfate transporter rather than by a
specific molybdate transporter [Transport and binding
proteins, Anions].
Length = 354
Score = 85.5 bits (212), Expect = 1e-17
Identities = 64/234 (27%), Positives = 104/234 (44%), Gaps = 49/234 (20%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIGVVPQDTVLFNN 992
G+SG+GK+T+IRL+ + G+I ++ + + + ++ IG V Q+ LF +
Sbjct: 30 GRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPH 89
Query: 993 -SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
S++ N++Y A ER S E V E
Sbjct: 90 LSVRGNLRYGM------------KRARPSER---------------RISFERVIE----- 117
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+L G +G +LSGGEKQRVAI R LL +P+++L+DE +ALD +
Sbjct: 118 -----LL----GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKY 168
Query: 1112 NIQSALNRVCASRT--TIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
I L R+ A + V+H L ++ AD ++V+ G + G E+
Sbjct: 169 EILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
Score = 33.9 bits (78), Expect = 0.44
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 7/29 (24%)
Query: 578 KLSGGEKQRVAI--ALNS-----LVDKPL 599
+LSGGEKQRVAI AL S L+D+PL
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPL 159
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 83.7 bits (207), Expect = 2e-17
Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 45/227 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYD-VES----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST++R L R D +E G + D ++ V +R+ IG+V Q
Sbjct: 45 IGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104
Query: 989 LFNNSIKFNIQY-ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI NI + ARIN + D+ E + E +++A
Sbjct: 105 PFPKSIYENIAFGARING---------YTGDMDELV-----------------ERSLRKA 138
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A + +++ E G LSGG++QR+ IART+ P+++L+DE SALD
Sbjct: 139 AVWDECKDKL-----------NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDP 187
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 1154
+ I+ ++ + + T +IV H + + ++ E VE G
Sbjct: 188 ISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGG 234
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 82.6 bits (205), Expect = 2e-17
Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 60/223 (26%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD-------TV 988
+G SG GKST++RL+ SG++ +D + + IG V Q+ TV
Sbjct: 35 LGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT-----GPGPDIGYVFQEDALLPWLTV 89
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
L N + ++ + +E R E V A
Sbjct: 90 LDN--VALGLELRGKSKAEAR-------------------------ERAKELLELVGLAG 122
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
D +P +LSGG +QRVAIAR L P+++LLDE ALD
Sbjct: 123 -FED------KYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1109 TERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAG 1148
T +Q L R+ +T ++V H + ++ AD ++V+
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
Score = 31.4 bits (72), Expect = 2.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 579 LSGGEKQRVAIA 590
LSGG +QRVAIA
Sbjct: 131 LSGGMRQRVAIA 142
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of a
transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 78.5 bits (194), Expect = 3e-17
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 45/162 (27%)
Query: 944 STIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLFNN-SIKFNIQYA 1001
ST+++L+ SG I +D ++ +S LR+ IGVV QD LF +++ N+ +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF- 59
Query: 1002 RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFP 1061
R ++ +EA + + +
Sbjct: 60 --------------------------------GLRDKEADARAEEALERVGLPDFLDR-- 85
Query: 1062 DGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103
E LSGG+KQRVAIAR LLK P+++LLDE T+
Sbjct: 86 --------EPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
Score = 33.1 bits (76), Expect = 0.20
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 574 ERGLKLSGGEKQRVAIALNSLVDKPLVF 601
E LSGG+KQRVAIA L L+
Sbjct: 86 EPVGTLSGGQKQRVAIARALLKKPKLLL 113
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 82.3 bits (204), Expect = 4e-17
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 15/97 (15%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-------QSALNRVCASRTTI 1127
LSGG++QR+ IAR L P++++ DE SALD + I Q L T
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG------LTY 163
Query: 1128 I-VAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ ++H LS + + +D I VM+ G+IVE G EE+
Sbjct: 164 LFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
Score = 43.0 bits (102), Expect = 5e-04
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAI 980
VG+SG GKST+ RL+ + SG+I + ++I +S+ R+ +
Sbjct: 45 VGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERV 89
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 81.1 bits (201), Expect = 8e-17
Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 38/228 (16%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +GAGKST+++ + SG+I I + ++ + R IG VPQ K
Sbjct: 36 IGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVR---KRRKRLRIGYVPQ---------K 83
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
++ + + ++V + + D +E+V EA + +
Sbjct: 84 SSVDRS-FPITVKDV--VLLGRYGKKGWFRRLNKKD---------KEKVDEALERVGMED 131
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
D Q+GE LSGG+KQRV +AR L + P ++LLDE + +D ++ I
Sbjct: 132 LR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD 180
Query: 1116 ALNR-VCASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLE 1161
L +T ++V H L ++ + D ++ ++ ++ G EE+L
Sbjct: 181 LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227
Score = 31.0 bits (71), Expect = 2.9
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 578 KLSGGEKQRVAIALNSLVDKP 598
+LSGG+KQRV +A +L P
Sbjct: 139 ELSGGQKQRVLLAR-ALAQNP 158
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 81.2 bits (200), Expect = 9e-17
Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 44/234 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST +R L R D +E +G+I + QNI + LR+ +G+V Q
Sbjct: 36 IGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F S+ N+ Y +I ++ KE I +R+ EE +K+A
Sbjct: 96 PFPFSVYDNVAYGLKIAGVKD--KEL-----IDQRV-----------------EESLKQA 131
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A + + + SGG++QR+ IAR L P++VLLDE TSALD
Sbjct: 132 AIWKETKDNL-----------DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ I+ L + T I+V H L +D+ + G+++E G EE+
Sbjct: 181 ISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 82.6 bits (204), Expect = 1e-16
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 54/230 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQDTVLFNN 992
+G SGAGKST+IR + SG + +D Q++ T+S + L R+ IG++ Q
Sbjct: 37 IGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQ------- 89
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS-- 1050
FN+ +S + + + P D N ++E+K T
Sbjct: 90 --HFNL---------------LSSRTVFGNV-ALPLELD------NTPKDEIKRKVTELL 125
Query: 1051 --ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
+ ++ S+P LSGG+KQRVAIAR L P+++L DEATSALD
Sbjct: 126 ALVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 1109 TERNIQSAL---NRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERG 1154
T ++I L NR T +++ H + + D + V+ GE++E+G
Sbjct: 175 TTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQG 223
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 239
Score = 80.5 bits (199), Expect = 1e-16
Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 45/231 (19%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ-AIGVVPQDTVLFNNSIK 995
G SG+GK+T++RL+ +SG I ++ + +++ +G V Q LF +
Sbjct: 35 GPSGSGKTTLLRLIAGLERPDSGTILFGGED---ATDVPVQERNVGFVFQHYALFRHMTV 91
Query: 996 F-NIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
F N+ + R+ E EA A +HE +L
Sbjct: 92 FDNVAFGLRVKPRSERPPEAEIRAKVHE-LLKL--------------------------- 123
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
++ D Y Q LSGG++QRVA+AR L P+++LLDE ALD K + +
Sbjct: 124 -VQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175
Query: 1114 QSALNRVC--ASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
+ L R+ TT+ V H + AD ++VM+ G I + G +E+ +
Sbjct: 176 RRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and two
nucleotide binding domains (NBDs) or subunits that couple
transport to the hydrolysis of ATP. In the maltose
transport system, the periplasmic maltose binding protein
(MBP) stimulates the ATPase activity of the
membrane-associated transporter, which consists of two
transmembrane subunits, MalF and MalG, and two copies of
the ATP binding subunit, MalK, and becomes tightly bound
to the transporter in the catalytic transition state,
ensuring that maltose is passed to the transporter as ATP
is hydrolyzed.
Length = 213
Score = 80.0 bits (198), Expect = 1e-16
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 47/224 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSI 994
+G SG GK+T +R++ + SG I+I +++ + + I +V Q+ L+ + ++
Sbjct: 32 LGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTV 89
Query: 995 KFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
NI + ++ ++ +I ER V+E A I
Sbjct: 90 YDNIAFGLKLRKVPKD--------EIDER---------------------VREVAELLQI 120
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
E +L D Q LSGG++QRVA+ R +++ P++ L+DE S LD K +
Sbjct: 121 -EHLL---DRKPKQ-------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169
Query: 1114 QSALNRVCA--SRTTIIVAH-RLSTIIHADEILVMHAGEIVERG 1154
++ L R+ TTI V H ++ + AD I VM+ G+I + G
Sbjct: 170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
Score = 33.8 bits (78), Expect = 0.34
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVFRWD 604
LSGG++QRVA+ ++V +P VF D
Sbjct: 131 LSGGQRQRVALG-RAIVREPKVFLMD 155
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 81.0 bits (200), Expect = 1e-16
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 48/235 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG+GKST++R + R D+ +G I + NI LR+ IG+V Q
Sbjct: 37 IGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y R+ +K+ +L A E+ +K A
Sbjct: 97 PFPMSIYENVVYGLRLKG----IKDKQ--------VLD------------EAVEKSLKGA 132
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
+ ++ +R+ +D+ +G LSGG++QRV IAR L +P+I+LLDE TSALD
Sbjct: 133 SIWDEVKDRL------HDSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDP 181
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRL---STIIHADEILVMHAGEIVERGRHEEL 1159
+ I+ L + T ++V + S I +D G+++E +++
Sbjct: 182 ISAGKIEETLLGLKDDYTMLLVTRSMQQASRI--SDRTGFFLDGDLIEYNDTKQM 234
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 80.9 bits (200), Expect = 1e-16
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 43/233 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYD-VES----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST +R L R D ++ G I +D ++I + LR +G+V Q
Sbjct: 51 IGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y RI+ A + A++ E + E +++A
Sbjct: 111 PFPKSIYENVAYGPRIHGL------ARSKAELDEIV-----------------ETSLRKA 147
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
++ +R+ E G LSGG++QR+ IAR + +P+++L+DE SALD
Sbjct: 148 GLWEEVKDRL-----------HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP 196
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM-HAGEIVERGRHEEL 1159
++ ++ + + T +IV H + + H G +VE G E++
Sbjct: 197 IATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 80.5 bits (199), Expect = 2e-16
Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 50/236 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSI 994
+G +GAGKST+++ L +SG++ ++ + + L + V+PQ++ L F ++
Sbjct: 33 LGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV 92
Query: 995 KFNIQYARI--NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
+ +Q RI + E ++ I + L AAT
Sbjct: 93 QEVVQMGRIPHRSGREPEEDER----IAAQAL----------------------AATDLS 126
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIV------LLDEATSALD 1106
G D + LSGGE+QRV +AR L + V LDE TSALD
Sbjct: 127 GLA-------GRDYRT------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173
Query: 1107 TKTERNIQSALNRVCASRTTII-VAHRLS-TIIHADEILVMHAGEIVERGRHEELL 1160
+ + ++ ++ V H L+ +AD I+++H G ++ G +++L
Sbjct: 174 IAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 85.0 bits (210), Expect = 2e-16
Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 36/210 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G++G+GKST++ L R E G+I ID + +V+ + R+A GV+PQ +F+ + +
Sbjct: 1251 LGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR 1309
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ D +E+ S+EE+ + A +
Sbjct: 1310 KNL-------------------DPYEQW----------------SDEEIWKVAEEVGLKS 1334
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I FPD D + + G LS G KQ + +AR++L +I+LLDE ++ LD T + I+
Sbjct: 1335 VIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK 1394
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVM 1145
L + ++ T I+ HR+ ++ + LV+
Sbjct: 1395 TLKQSFSNCTVILSEHRVEALLECQQFLVI 1424
Score = 69.6 bits (170), Expect = 8e-12
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ E I FP+ T +GE G+ LSGG++ R+++AR + K + LLD + LD TE+
Sbjct: 527 LEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKE 586
Query: 1113 I-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEEL 1159
I +S L ++ +++T I+V +L + AD+IL++H G G EL
Sbjct: 587 IFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 79.3 bits (196), Expect = 2e-16
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 48/223 (21%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQDTVLFNN- 992
G SG+GK+T++ L+ V+ G + + Q + S+ L R+ IG + Q L
Sbjct: 38 GPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
+ + N+Q A ++ + Y + EA
Sbjct: 98 TARQNVQMA---------------LELQPNL---------SYQEARERARAMLEAV---G 130
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ + + +P LSGG+KQRVAIAR L+ P++VL DE T+ALD+K+ R+
Sbjct: 131 LGDHLDYYPHN-----------LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRD 179
Query: 1113 IQSALNRVCASR--TTIIVAH--RLSTIIHADEILVMHAGEIV 1151
+ + ++ + T +IV H R+ + AD I+ M G+++
Sbjct: 180 VVELMQKLAREQGCTILIVTHDNRILDV--ADRIVHMEDGKLL 220
Score = 33.1 bits (76), Expect = 0.66
Identities = 14/20 (70%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 579 LSGGEKQRVAIALNSLVDKP 598
LSGG+KQRVAIA +LV +P
Sbjct: 142 LSGGQKQRVAIA-RALVHRP 160
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 80.4 bits (198), Expect = 2e-16
Identities = 73/278 (26%), Positives = 119/278 (42%), Gaps = 57/278 (20%)
Query: 912 GTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE-----SGDIFI--D 964
G A+ + M+ E Q+ +G SG GKST +R R +D+ G+I + D
Sbjct: 27 GGYQALKNINMMVHEKQVTAL---IGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPD 83
Query: 965 NQNI--KTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHER 1022
N NI V +R I +V Q F SI N+ Y ++ + + ER
Sbjct: 84 NVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGL------RIRGVKRRSILEER 137
Query: 1023 ILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQR 1082
+ E ++ AA ++ +R+ G+ LSGG++QR
Sbjct: 138 V-----------------ENALRNAALWDEVKDRL-----------GDLAFNLSGGQQQR 169
Query: 1083 VAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADE 1141
+ IAR L P+I+L DE TSALD +I+ ++ + T +IV H + +D
Sbjct: 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDY 229
Query: 1142 ILVMHAGEIVERGRHEELLERNGVYASMWIQQNTKQSE 1179
M+ GE++E G +++I+ KQ+E
Sbjct: 230 TAYMYMGELIEF----------GATDTIFIKPKNKQTE 257
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 79.7 bits (197), Expect = 2e-16
Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 47/238 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G SGAGKST++ L+ F SG+I I+ + T S + R + ++ Q+ LF + ++
Sbjct: 31 LGPSGAGKSTLLNLIAGFETPASGEILINGVDH-TASPPAER-PVSMLFQENNLFAHLTV 88
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE-VKEAATSADI 1053
NI ++NA + E V+ AA +
Sbjct: 89 AQNIGLGLSPG-----------------------------LKLNAEQREKVEAAAAQVGL 119
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
G+ ++ +LSGG++QRVA+AR L++ I+LLDE SALD +
Sbjct: 120 --------AGFLKRLPG---ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM 168
Query: 1114 QSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERNGVYAS 1168
+ ++++C R T ++V H AD ++ + G I +G +ELL A+
Sbjct: 169 LALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKASAAA 226
Score = 31.6 bits (72), Expect = 2.1
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 579 LSGGEKQRVAIALNSLVDKPL 599
LSGG++QRVA+A + ++P+
Sbjct: 130 LSGGQRQRVALARCLVREQPI 150
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters and
related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are widely
conserved in bacteria and archaea. Only very few species
lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC forms
the contact region with the ATP-binding cassette and
represent a conserved motif among the ABC transporters.
Length = 180
Score = 78.2 bits (194), Expect = 2e-16
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 1132
LSGGE+QRV +AR L + P I+LLDE TS LD + + L R+ R T ++V H
Sbjct: 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157
Query: 1133 LS-TIIHADEILVMHAGEIVERG 1154
L+ +AD ++++ G IV +G
Sbjct: 158 LNLAARYADRVILLKDGRIVAQG 180
Score = 55.5 bits (135), Expect = 1e-08
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 985
+G +GAGKST+++ L SG+I +D +++ ++S L + I VPQ
Sbjct: 31 LGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80
Score = 30.9 bits (71), Expect = 2.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 579 LSGGEKQRVAIA 590
LSGGE+QRV +A
Sbjct: 98 LSGGERQRVLLA 109
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 79.9 bits (197), Expect = 2e-16
Identities = 67/232 (28%), Positives = 105/232 (45%), Gaps = 41/232 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI-KTVSQASLRQAIGVVPQDTVL 989
+G SG GKST++R L R D +E +G + +D ++I + A LR +G+V Q
Sbjct: 35 IGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94
Query: 990 FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
F SI N+ Y + +K+ ++ ER L R A +EVK+
Sbjct: 95 FPMSIYENVAYG---LRAQGIKDKKVLDEVVERSL-----------RGAALWDEVKD--- 137
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
R+ S G LSGG++QR+ IART+ P ++L+DE TSALD
Sbjct: 138 ------RLKSHAFG-----------LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
Query: 1110 ERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
I+ + + + T +IV H + +D GE+VE + +
Sbjct: 181 THKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 82.9 bits (206), Expect = 3e-16
Identities = 62/223 (27%), Positives = 94/223 (42%), Gaps = 45/223 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA----IGVVPQDTVLFN 991
+G++GAGKST++++L Y +SG+I ID K V+ +S R A I V Q+ L
Sbjct: 40 LGENGAGKSTLMKILSGVYPPDSGEILIDG---KPVAFSSPRDALAAGIATVHQELSLVP 96
Query: 992 N-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
N S+ NI + D + R
Sbjct: 97 NLSVAENIF-------------------LGREPTRRFGLIDRKAMR----------RRAR 127
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+ L DT VG+ LS ++Q V IAR L ++++LDE T+AL K
Sbjct: 128 ELLAR--LGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181
Query: 1111 RNIQSALNRVCASRTTII-VAHRLSTII-HADEILVMHAGEIV 1151
+ + R+ A II ++HRL + AD I V+ G +V
Sbjct: 182 ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
Score = 72.2 bits (178), Expect = 7e-13
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 50/242 (20%)
Query: 940 GAGKSTIIRLLFRFYDVESGDIFIDNQ--NIKTVSQASLRQAIGVVPQD-----TVLFNN 992
GAG++ + R LF SG+I +D + I++ A ++ I VP+D VL +
Sbjct: 295 GAGRTELARALFGARPASSGEILLDGKPVRIRSPRDA-IKAGIAYVPEDRKSEGLVL-DM 352
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
SI NI L+ + + E + E
Sbjct: 353 SIAENI------------------------TLASLRRFSRRGLIDRRKERALAERYI-RR 387
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ + S + +G LSGG +Q+V +AR L P++++LDE T +D +
Sbjct: 388 LRIKTPSP----EQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE 439
Query: 1113 IQSALNRVCASRTTIIVAHRLST----IIH-ADEILVMHAGEIVERGRHEELLERNGVYA 1167
I + + A I++ +S+ ++ +D ILVM G IV EE E + A
Sbjct: 440 IYRLIRELAAEGKAILM---ISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMAA 496
Query: 1168 SM 1169
+
Sbjct: 497 AF 498
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ for
thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 211
Score = 78.3 bits (193), Expect = 4e-16
Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 47/224 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
VG SG+GKST++ L+ F +SG + I+ ++ A + + ++ Q+ LF + ++
Sbjct: 30 VGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA--DRPVSMLFQENNLFAHLTV 87
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE-VKEAATSADI 1053
+ N+ ++ A + + ++ A +
Sbjct: 88 EQNVGLGLSPG-----------------------------LKLTAEDRQAIEVALARVGL 118
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
P +LSGGE+QRVA+AR L++ ++LLDE +ALD +
Sbjct: 119 AGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM 167
Query: 1114 QSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERG 1154
+ + A T ++V H+ A ++ + G I +G
Sbjct: 168 LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
Score = 32.1 bits (73), Expect = 1.2
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 579 LSGGEKQRVAIALNSLVDKPLV 600
LSGGE+QRVA+A + DKP++
Sbjct: 129 LSGGERQRVALARVLVRDKPVL 150
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 78.8 bits (194), Expect = 5e-16
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 44/234 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST +R L R D+ G++ +D +NI K V LR+ +G+V Q
Sbjct: 36 IGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y RI+ +K+ I E +K+A
Sbjct: 96 PFPMSIYDNVAYGPRIHG----IKDKKELDKI--------------------VEWALKKA 131
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ + + + LKLSGG++QR+ IART+ P ++L+DE TSALD
Sbjct: 132 ALWDEVKD-----------DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP 180
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ I+ + + T +IV H + +D G+++E + E++
Sbjct: 181 ISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 80.8 bits (200), Expect = 6e-16
Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 55/233 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG GKST++R++ D+ SGD+FI + + V A + +G+V Q L
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQSYAL------ 86
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASE--EEVKEAATSADI 1053
Y ++ +E +SF + A E + V + A
Sbjct: 87 ----YPHLSVAEN---------------MSF----GLKLAGAKKEEINQRVNQVA----- 118
Query: 1054 HERILSFPDGYDTQVG---ERGLK-LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+L Q+ +R K LSGG++QRVAI RTL+ P + LLDE S LD
Sbjct: 119 --EVL--------QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 1110 ERNIQSALNRVCA--SRTTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEEL 1159
++ ++R+ RT I V H ++ + AD+I+V+ AG + + G+ EL
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 33.5 bits (77), Expect = 0.71
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVFRWD 604
LSGG++QRVAI +LV +P VF D
Sbjct: 134 LSGGQRQRVAIG-RTLVAEPSVFLLD 158
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 78.5 bits (193), Expect = 8e-16
Identities = 69/235 (29%), Positives = 103/235 (43%), Gaps = 45/235 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST IR L R D+ G + I+ ++I V LR+ +G+V Q
Sbjct: 44 IGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y RI+ A D+ DG E ++ A
Sbjct: 104 PFPMSIYDNVAYGPRIHG--------ANKKDL--------DG---------VVENALRSA 138
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A + +R+ S L LSGG++QR+ IARTL P+I+L DE TSALD
Sbjct: 139 ALWDETSDRLKS-----------PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
+ I+ + + T +IV H + +D GE++E G+ ++
Sbjct: 188 ISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 79.6 bits (197), Expect = 8e-16
Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 52/239 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASLRQAIGVVPQDTVLFNN 992
VG+SG GKST+ RLL G+++ Q++ Q LRQ I +V F N
Sbjct: 47 VGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIV------FQN 100
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
Y +N ++ +IL P +T ++A+E K A A
Sbjct: 101 P------YGSLNPRKKV-----------GQILEEPLLINTS---LSAAERREKALAMMAK 140
Query: 1053 IHERILSFPDGYDTQVGERGLKL-SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ R P+ YD R + SGG++QR+AIAR L+ P +V+ DE SALD +
Sbjct: 141 VGLR----PEHYD-----RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQA 191
Query: 1112 NI-------QSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ Q L + + ++H LS + H ADE++VM+ G VE+G E++
Sbjct: 192 QVLNLMMDLQQELG-----LSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional.
Length = 351
Score = 79.4 bits (196), Expect = 1e-15
Identities = 68/238 (28%), Positives = 106/238 (44%), Gaps = 61/238 (25%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA-IGVVPQDTVLFNN-SI 994
G SG GK+T++RL+ G IFID ++ V+ S++Q I +V Q LF + S+
Sbjct: 39 GPSGCGKTTVLRLVAGLEKPTEGQIFIDGED---VTHRSIQQRDICMVFQSYALFPHMSL 95
Query: 995 KFNIQYA--RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
N+ Y + +EE K+ VKEA D
Sbjct: 96 GENVGYGLKMLGVPKEERKQ------------------------------RVKEALELVD 125
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ F D Y Q+ SGG++QRVA+AR L+ P+++L DE S LD R+
Sbjct: 126 LA----GFEDRYVDQI-------SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174
Query: 1113 -------IQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+Q N T++ V H S +D ++VM+ G+I++ G +EL +
Sbjct: 175 MREKIRELQQQFN-----ITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227
Score = 29.7 bits (67), Expect = 9.6
Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 578 KLSGGEKQRVAIALNSLVDKPLVFRWD 604
++SGG++QRVA+A +L+ KP V +D
Sbjct: 136 QISGGQQQRVALA-RALILKPKVLLFD 161
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a 2-AEP-specific
transporter likely [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 353
Score = 79.3 bits (196), Expect = 2e-15
Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 59/237 (24%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIK 995
G SG GK+T++R++ +G I+ ++I + ++ G+V Q LF N ++
Sbjct: 37 GPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVFQSYALFPNLTVA 94
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y N G A++ E
Sbjct: 95 DNIAYGLKNR-----------------------GMGR------------------AEVAE 113
Query: 1056 RILSFPD--GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK----- 1108
R+ D G + +LSGG++QRVA+AR L +P ++LLDE SALD +
Sbjct: 114 RVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL 173
Query: 1109 -TE-RNIQSALNRVCASRTTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEELLER 1162
TE R +Q L TTI+V H + + AD I+VM+ G I + G +E+
Sbjct: 174 RTEIRQLQRRLG-----VTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 279
Score = 77.8 bits (192), Expect = 2e-15
Identities = 67/234 (28%), Positives = 102/234 (43%), Gaps = 49/234 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +G+GKST +RL+ + ESG I ID + + +R IG+ V N +
Sbjct: 39 IGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGM-----VFQNPDNQ 93
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
F + A+ E+ D+ +F G + + +E V EA
Sbjct: 94 F------VGATVED--------DV-----AF--GLENKGIPHEEMKERVNEA-------- 124
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK------- 1108
L D + E +LSGG+KQRVAIA + P+I++LDEATS LD +
Sbjct: 125 --LELVGMQDFKEREPA-RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181
Query: 1109 TERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER 1162
T + I+ T I + H L + +D +LVM G++ EL R
Sbjct: 182 TIKGIRDDYQ-----MTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230
Score = 30.9 bits (70), Expect = 3.6
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 578 KLSGGEKQRVAIA 590
+LSGG+KQRVAIA
Sbjct: 140 RLSGGQKQRVAIA 152
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug
resistance transporter and related proteins, subfamily A.
This family of ATP-binding proteins belongs to a
multi-subunit transporter involved in drug resistance
(BcrA and DrrA), nodulation, lipid transport, and
lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic systems
of the ABCA subfamily display ABC domains that are quite
similar to this family. The ATP-binding domain shows the
highest similarity between all members of the ABC
transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 75.1 bits (186), Expect = 2e-15
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-H 1131
LKLSGG KQR+A+A+ LL P++++LDE TS LD ++ R L + TI+++ H
Sbjct: 94 LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSH 153
Query: 1132 RLSTIIH-ADEILVMHAGEI 1150
L D + +++ G I
Sbjct: 154 ILEEAERLCDRVAILNNGRI 173
Score = 51.6 bits (125), Expect = 2e-07
Identities = 18/66 (27%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G +GAGK+T+I+++ +SG+I + ++IK +++ IG +P++ L+ N ++
Sbjct: 32 LGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTV 90
Query: 995 KFNIQY 1000
+ N++
Sbjct: 91 RENLKL 96
Score = 30.8 bits (71), Expect = 2.6
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 577 LKLSGGEKQRVAIALNSLVDKP 598
LKLSGG KQR+A+A +L+ P
Sbjct: 94 LKLSGGMKQRLALAQ-ALLHDP 114
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 77.4 bits (190), Expect = 2e-15
Identities = 64/253 (25%), Positives = 108/253 (42%), Gaps = 47/253 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST++R R D+ G + ++NI ++ LR+ +G+V Q
Sbjct: 52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI NI +A R N + + E E+ ++ A
Sbjct: 112 PFPKSIYENIAFAPRANGYKGNLDELV--------------------------EDSLRRA 145
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ +++ E+G LSGG++QR+ IAR + P ++L+DE SALD
Sbjct: 146 AIWEEVKDKL-----------KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDP 194
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG-RHEELLERNGVY 1166
+ R ++ + T I+V H + + EI E G R +L+E +
Sbjct: 195 ISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPT- 253
Query: 1167 ASMWIQQNTKQSE 1179
M+ TK++
Sbjct: 254 EQMFGSPQTKEAR 266
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 275
Score = 77.4 bits (191), Expect = 2e-15
Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 61/247 (24%)
Query: 922 MIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQ 978
M+AL +G +GAGKST+ SG++ I + IK + SL R+
Sbjct: 30 MVAL----------LGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK-YDKKSLLEVRK 78
Query: 979 AIGVVPQ--DTVLFNNSIKFNIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQY 1034
+G+V Q D LF +++ ++ + +N S+EEV
Sbjct: 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEV------------------------ 114
Query: 1035 ARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQ 1094
E+ VKEA + + +G++ + LSGG+K+RVAIA L P+
Sbjct: 115 ------EKRVKEALKAVGM--------EGFENKPPHH---LSGGQKKRVAIAGILAMKPE 157
Query: 1095 IVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRLSTI-IHADEILVMHAGEIVE 1152
I++LDE TS LD I L + TII++ H + + ++AD++ VM G+I++
Sbjct: 158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK 217
Query: 1153 RGRHEEL 1159
G +E+
Sbjct: 218 EGTPKEV 224
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 279
Score = 77.4 bits (191), Expect = 3e-15
Identities = 64/245 (26%), Positives = 100/245 (40%), Gaps = 69/245 (28%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ--NIKTVSQASLR----------QAIGVV 983
VG +G+GKST+ +LL E+G I + + +TV + Q +G
Sbjct: 39 VGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98
Query: 984 PQDTVLF---NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINAS 1040
QD V F N + EE+ E R++ +
Sbjct: 99 VQDDVAFGLENIGV-----------PREEMVE-----------------------RVDQA 124
Query: 1041 EEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE 1100
+V + F + +LSGG+KQRVAIA L P I++LDE
Sbjct: 125 LRQV-----------GMEDFLN-------REPHRLSGGQKQRVAIAGVLALQPDIIILDE 166
Query: 1101 ATSALDTKTERNIQSALNRVCASR--TTIIVAHRLSTIIHADEILVMHAGEIVERGRHEE 1158
ATS LD + R + + ++ + T + + H L AD ++VM+ GEI+E G EE
Sbjct: 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEE 226
Query: 1159 LLERN 1163
+ +
Sbjct: 227 IFKSG 231
Score = 31.9 bits (73), Expect = 1.9
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG+KQRVAIA
Sbjct: 141 LSGGQKQRVAIA 152
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea
receptor, subfamily C. The SUR domain 1. The
sulfonylurea receptor SUR is an ATP transporter of the
ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates with
the potassium channel proteins Kir6.1 or Kir6.2 to form
the ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 75.4 bits (185), Expect = 4e-15
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 42/220 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIGVVPQDTVLFN 991
VGQ G GKS+++ + G + N+N S + R ++ Q L N
Sbjct: 33 VGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN 92
Query: 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+++ NI +F ++ Q K +
Sbjct: 93 ATVEENI--------------------------TFGSPFNKQ---------RYKAVTDAC 117
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK-TE 1110
+ I P G T++GERG+ LSGG++QR+ +AR L + IV LD+ SALD ++
Sbjct: 118 SLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD 177
Query: 1111 RNIQSALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAG 1148
+Q + + RT ++V H+L + HAD I+ M G
Sbjct: 178 HLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
Score = 33.1 bits (75), Expect = 0.62
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GERG+ LSGG++QR+ +A
Sbjct: 134 IGERGINLSGGQRQRICVA 152
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 75.9 bits (187), Expect = 4e-15
Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 46/225 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLR-QAIGVVPQDTVLFN 991
VG SG+GKST++ +L D SG++ + Q + + + A+LR + +G V Q L
Sbjct: 42 VGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIP 101
Query: 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
N + A E V A ++ G + +R A
Sbjct: 102 N----------LTA-LENV---ALPLEL--------RGESSADSRAGAKALLEA-----V 134
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ +R+ +P +LSGGE+QRVA+AR P ++ DE T LD T
Sbjct: 135 GLGKRLTHYPA-----------QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 1112 NIQS---ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER 1153
I ALNR + T ++V H D L + +G +VE
Sbjct: 184 KIADLLFALNRERGT-TLVLVTHDPQLAARCDRQLRLRSGRLVED 227
Score = 30.8 bits (70), Expect = 3.3
Identities = 10/13 (76%), Positives = 13/13 (100%)
Query: 578 KLSGGEKQRVAIA 590
+LSGGE+QRVA+A
Sbjct: 146 QLSGGEQQRVALA 158
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 76.5 bits (188), Expect = 4e-15
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 48/228 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST I+ L + +G++ + NI V LR+ IG+V Q
Sbjct: 44 IGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103
Query: 989 LFNNSIKFNIQYA-RINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
F SI N+ Y RI+ ++++++E E+ +K
Sbjct: 104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIV--------------------------EKSLK 137
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
+ A ++ +R+ + + L LSGG++QR+ IAR L P ++L+DE TSAL
Sbjct: 138 DVALWDEVKDRLHT-----------QALSLSGGQQQRLCIARALATNPDVLLMDEPTSAL 186
Query: 1106 DTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE 1152
D + R I+ + ++ T +IV H + +D+ + GE+VE
Sbjct: 187 DPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 76.2 bits (187), Expect = 4e-15
Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 44/226 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST +R L R D+ +G++ + QNI LR+ +G+V Q
Sbjct: 37 IGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y R+ VK+ + +L A E +K+A
Sbjct: 97 PFPFSIYENVIYGLRLAG----VKD--------KAVLD------------EAVETSLKQA 132
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ + + E L LSGG++QRV IAR L P ++LLDE TSALD
Sbjct: 133 AIWDEVKDHL-----------HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP 181
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE 1152
+ I++ L + T I+V H + +D+ G ++E
Sbjct: 182 ISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 76.2 bits (187), Expect = 5e-15
Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 43/234 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST++R + R +D+ +G I +D+ +I + V S+R+ +G+V Q
Sbjct: 36 IGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASE-EEVKEA 1047
F + I++ +++ GY R+N SE +E+ E+
Sbjct: 96 PF------------------------PAMSIYDNVIA---GYKLN-GRVNRSEADEIVES 127
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
+ + ++ D ++ ++LSGG++QR+ IART+ P+++L+DE SALD
Sbjct: 128 SL------KRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP 181
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ I+ + + T IIV H + +D + G++VE G +++
Sbjct: 182 ISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 290
Score = 76.6 bits (189), Expect = 5e-15
Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 51/239 (21%)
Query: 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI----KTVSQASLRQAIGVVPQ-- 985
Y+ +G +G+GKST+++ L SG + I + I K LR+ +G+V Q
Sbjct: 35 YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFP 94
Query: 986 DTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE 1043
+ LF +++ +I + +N SEE+ K+ A E
Sbjct: 95 EHQLFEETVEKDICFGPMNFGVSEEDAKQKA--------------------------REM 128
Query: 1044 VKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103
++ ++ R +LSGG+ +RVAIA L P++++LDE T+
Sbjct: 129 IELVGLPEELLAR--------------SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTA 174
Query: 1104 ALDTKTERNIQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEEL 1159
LD K + + ++ + TT++V H + AD+I+VMH G + +G E+
Sbjct: 175 GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response to
hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 76.0 bits (187), Expect = 5e-15
Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 55/243 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK-------TVSQAS------LRQAIGV 982
+G SG+GKSTI+R+L ++ G I ++ + + + A +R IG+
Sbjct: 32 IGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91
Query: 983 VPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042
V Q LF + V + T A + +L +E+
Sbjct: 92 VFQSFNLF---------------PHKTVLDNVTEAPVL--VLGMARA---------EAEK 125
Query: 1043 EVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEAT 1102
E + ++ P +LSGG++QRVAIAR L P+++L DE T
Sbjct: 126 RAMELLDMVGLADKADHMP-----------AQLSGGQQQRVAIARALAMRPKVMLFDEVT 174
Query: 1103 SALDTKTERNIQSALNRVCASR--TTIIVAHRLSTIIH--ADEILVMHAGEIVERGRHEE 1158
SALD + + + + R+ + T ++V H + AD + G IVE+G+ +E
Sbjct: 175 SALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDE 233
Query: 1159 LLE 1161
+
Sbjct: 234 IFR 236
Score = 31.7 bits (72), Expect = 2.1
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 578 KLSGGEKQRVAIALNSLVDKPLVFRWDYV 606
+LSGG++QRVAIA +L +P V +D V
Sbjct: 146 QLSGGQQQRVAIA-RALAMRPKVMLFDEV 173
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable carbon-to-phosphorus
(C-P) bond. Phosphonates are widespread among naturally
occurring compounds in all kingdoms of wildlife, but only
prokaryotic microorganisms are able to cleave this bond.
Certain bacteria such as E. coli can use
alkylphosphonates as a phosphorus source. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 241
Score = 75.3 bits (186), Expect = 6e-15
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH 1131
+LSGG++QRVAIAR L++ P+++L DE ++LD + R + L R+ T I+ H
Sbjct: 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLH 203
Query: 1132 RLSTII-HADEILVMHAGEIVERGRHEEL 1159
++ +AD I+ + G IV G EL
Sbjct: 204 QVDLAREYADRIVGLKDGRIVFDGPPAEL 232
Score = 45.3 bits (108), Expect = 7e-05
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQD 986
+G SGAGKST++R L + SG + ID +I + +LRQ IG++ Q
Sbjct: 33 IGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQ 86
Score = 32.5 bits (75), Expect = 1.1
Identities = 12/21 (57%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Query: 578 KLSGGEKQRVAIALNSLVDKP 598
+LSGG++QRVAIA +L+ +P
Sbjct: 144 QLSGGQQQRVAIA-RALMQQP 163
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems,
ATPase component [Amino acid transport and metabolism].
Length = 237
Score = 74.8 bits (185), Expect = 9e-15
Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 46/236 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGVVPQDTVLFNN-S 993
+G++GAGK+T+++ + SG I D ++I + R I VP+ +F +
Sbjct: 35 LGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLT 94
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILS-FPDGYDTQYARINASEEEVKEAATSAD 1052
++ N+ ++E +E E + FP
Sbjct: 95 VEENLLLGAYARRDKEAQE-----RDLEEVYELFPR------------------------ 125
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ ER +R LSGGE+Q +AIAR L+ P+++LLDE + L K
Sbjct: 126 LKERR-----------NQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 174
Query: 1113 IQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERNGV 1165
I A+ + T ++V + AD V+ G IV G ELL V
Sbjct: 175 IFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain II
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition metal
cobalt is an essential component of many enzymes and must
be transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport systems.
Length = 205
Score = 73.8 bits (182), Expect = 9e-15
Identities = 57/226 (25%), Positives = 89/226 (39%), Gaps = 62/226 (27%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNS 993
G++GAGK+T+ ++L SG I ++ + IK R++IG V QD LF +S
Sbjct: 32 TGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK---AKERRKSIGYVMQDVDYQLFTDS 88
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
+ EE+ +L + E+ + D+
Sbjct: 89 V------------REEL------------LLGLKELDA--------GNEQAETVLKDLDL 116
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ P L LSGG+KQR+AIA LL +++ DE TS LD K +
Sbjct: 117 YALKERHP-----------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165
Query: 1114 QSALNRVCASRTTIIVAHRLSTIIH--------ADEILVMHAGEIV 1151
+ + A +IV I H D +L++ G IV
Sbjct: 166 GELIRELAAQGKAVIV------ITHDYEFLAKVCDRVLLLANGAIV 205
Score = 36.1 bits (84), Expect = 0.065
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSGG+KQR+AIA L K L+
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLI 149
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is a
well-described phenomenon occurring in fungi and shares
several similarities with processes in bacteria and
higher eukaryotes. Compared to other members of the ABC
transporter subfamilies, the ABCG transporter family is
composed of proteins that have an ATP-binding cassette
domain at the N-terminus and a TM (transmembrane) domain
at the C-terminus.
Length = 194
Score = 73.4 bits (181), Expect = 1e-14
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 1133
LSGGE++RV+IA L+ P ++ LDE TS LD+ + + S L R+ RT I H+
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171
Query: 1134 STIIHA--DEILVMHAGEIVERG 1154
S+ I D++L++ G ++ G
Sbjct: 172 SSEIFELFDKLLLLSQGRVIYFG 194
Score = 39.8 bits (94), Expect = 0.003
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 937 GQSGAGKSTIIRLL--FRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990
G SGAGKST++ L R SG++ I+ + + + S R+ IG VPQD +L
Sbjct: 42 GPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL---DKRSFRKIIGYVPQDDILH 94
Score = 30.6 bits (70), Expect = 3.3
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVFRWD 604
LSGGE++RV+IAL LV P + D
Sbjct: 112 LSGGERKRVSIAL-ELVSNPSLLFLD 136
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 75.3 bits (185), Expect = 1e-14
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 1041 EEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE 1100
E K + + E I FP+ +T +GE G+ LSGG++ R+++AR + K + LLD
Sbjct: 126 EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 185
Query: 1101 ATSALDTKTERNI-QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEEL 1159
LD TE+ I +S + ++ A++T I+V ++ + AD+IL++H G G EL
Sbjct: 186 PFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 277
Score = 75.1 bits (184), Expect = 1e-14
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 49/232 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ--DTVLFNNS 993
+GQ+G+GKST RL+ ++ G + ID + + + +LR+ IG+V Q D +
Sbjct: 39 IGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT 98
Query: 994 IKFNIQYARINAS---EEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
++ ++ + N EE +K + E +L+ +N + + +E A
Sbjct: 99 VEDDVAFGMENQGIPREEMIKR------VDEALLA-----------VNMLDFKTREPA-- 139
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+LSGG+KQRVA+A + P+I++LDE+TS LD
Sbjct: 140 -----------------------RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 1111 RNIQSALNRVCASR--TTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELL 1160
+ I ++ + T + + H L +D ILVM AGEI++ EL
Sbjct: 177 QEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 73.6 bits (181), Expect = 2e-14
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 57/234 (24%)
Query: 934 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ------DT 987
L G SG GKST+++++ SG + + ++I T+ RQ + Q DT
Sbjct: 37 LITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDT 96
Query: 988 VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
V N + F Q + A D+ R + + +
Sbjct: 97 VYDN--LIFPWQIRNQ-----QPDPAIFLDDL---------------ERFALPDTILTKN 134
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
LSGGEKQR+++ R L P+++LLDE TSALD
Sbjct: 135 IAE------------------------LSGGEKQRISLIRNLQFMPKVLLLDEITSALDE 170
Query: 1108 KTERNIQSALNRVCASRTTII--VAHRLSTIIHADEILVM--HAGEIVERGRHE 1157
+ N+ ++R + + V H I HAD+++ + HAGE+ E R+E
Sbjct: 171 SNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQE-ARYE 223
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This
model describes the energy-transducing ATPase subunit
ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate)
ABC transporter in several Proteobacteria. This protein
is found so far only in Proteobacteria, and is found in
complete genomes only if the ThiB and ThiP subunits are
also found [Transport and binding proteins, Other].
Length = 213
Score = 73.4 bits (180), Expect = 2e-14
Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 47/220 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G SGAGKST++ L+ F + SG I +++Q+ + A ++ + ++ Q+ LF + ++
Sbjct: 30 MGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL--APYQRPVSMLFQENNLFAHLTV 87
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE-VKEAATSADI 1053
+ NI ++ ++NA ++E V +AA I
Sbjct: 88 RQNIGLG-LHPG----------------------------LKLNAEQQEKVVDAAQQVGI 118
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ + P+ +LSGG++QRVA+AR L++ I+LLDE SALD +
Sbjct: 119 ADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM 167
Query: 1114 QSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEI 1150
+ + ++C+ R T ++V H LS A +I V+ G+I
Sbjct: 168 LALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 74.3 bits (182), Expect = 2e-14
Identities = 64/246 (26%), Positives = 107/246 (43%), Gaps = 46/246 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GK+T +R + R +D+ +G I +D Q+I V ++R+ +G+V Q
Sbjct: 36 IGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
F F+ A + + G + + +E ++ AA
Sbjct: 96 PFPTMSVFDNVVAGLKLA----------------------GIRDRDHLMEVAERSLRGAA 133
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
++ +R+ + G LSGG++QR+ IAR L P+I+L+DE TSALD
Sbjct: 134 LWDEVKDRLKTPATG-----------LSGGQQQRLCIARALAVEPEILLMDEPTSALDPA 182
Query: 1109 TERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL-----ER 1162
+ I+ + + T IIV H + +D G++VE G ++L ER
Sbjct: 183 STARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDER 242
Query: 1163 NGVYAS 1168
Y S
Sbjct: 243 TEAYVS 248
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate uptake
proteins that transport only monosaccharides (Monos). The
Carb_Monos family is involved in the uptake of
monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include glucose,
galactose, and fructose. In members of the Carb_monos
family, the single hydrophobic gene product forms a
homodimer while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 163
Score = 71.7 bits (177), Expect = 2e-14
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 1133
LS GE+Q V IAR L + ++++LDE T+AL + + R+ A +I ++HRL
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 1134 STIIH-ADEILVMHAGEIV 1151
+ AD + V+ G +V
Sbjct: 143 DEVFEIADRVTVLRDGRVV 161
Score = 44.7 bits (107), Expect = 5e-05
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQ 985
+G++GAGKST++++L Y +SG+I +D + + S + + R I +V Q
Sbjct: 32 LGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ 82
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 75.7 bits (187), Expect = 2e-14
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 13/111 (11%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTII-VAHR 1132
LSGGEKQRVAI R LL AP+++L+DE ++LD +R + L R+ I+ V+H
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188
Query: 1133 LSTIIH-ADEILVMHAGEIVERGRHEELLERNGVYAS--M--WIQQNTKQS 1178
L I+ AD ++V+ G++ G EE V+AS M W+ + + S
Sbjct: 189 LDEILRLADRVVVLEQGKVKAFGPLEE------VWASSAMRPWLPKEEQSS 233
Score = 36.4 bits (85), Expect = 0.084
Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 7/28 (25%)
Query: 579 LSGGEKQRVAI--ALNS-----LVDKPL 599
LSGGEKQRVAI AL + L+D+PL
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPL 156
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P lyase
systems for utilization of phosphonates. These systems
resemble phosphonatase-based systems in having a three
component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble
transporter ATP-binding proteins but are suggested, based
on mutatgenesis studies, to be part of this C-P lyase
complex rather than part of a transporter per se.
Length = 224
Score = 73.2 bits (180), Expect = 2e-14
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT-VSQASLRQAIGVVPQDTVLFNNSIK 995
G SGAGKST+++ L+ Y +SG I + ++ ++QAS R+ + V + I
Sbjct: 41 GPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKT-------IG 93
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+ Q+ R V ++ ++ L + R A+ +E +I E
Sbjct: 94 YVSQFLR-------VIPRVSALEVVAEPL-----LERGVPR-EAARARARELLARLNIPE 140
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
R+ P SGGE+QRV IAR + I+LLDE T++LD + +
Sbjct: 141 RLWHLPPA----------TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE 190
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEI 1142
+ A +I I H +E+
Sbjct: 191 LIAEAKARGAALI------GIFHDEEV 211
Score = 30.4 bits (69), Expect = 4.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 580 SGGEKQRVAIALNSLVDKPL 599
SGGE+QRV IA + D P+
Sbjct: 151 SGGEQQRVNIARGFIADYPI 170
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the ABC
transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring proteins
excluded by this model include homologs from the archaeal
genus Methanosarcina [Protein fate, Protein and peptide
secretion and trafficking].
Length = 221
Score = 73.2 bits (180), Expect = 3e-14
Identities = 66/232 (28%), Positives = 98/232 (42%), Gaps = 62/232 (26%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLR-QAIGVV-------P 984
VG SG+GKST++ LL + SG++ + Q++ +S A LR + +G + P
Sbjct: 37 VGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96
Query: 985 QDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044
T L N ++ I S +E KE A +L E+V
Sbjct: 97 DFTALENVAMPLLIG----KKSVKEAKERA------YEML-----------------EKV 129
Query: 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
G + ++ R +LSGGE+QRVAIAR L+ P +VL DE T
Sbjct: 130 ------------------GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGN 171
Query: 1105 LDTKTERNI---QSALNRVCASRTT-IIVAHRLSTIIHADEILVMHAGEIVE 1152
LD + I LNR T+ ++V H L D +L M G++
Sbjct: 172 LDNNNAKIIFDLMLELNR--ELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
Score = 34.2 bits (79), Expect = 0.28
Identities = 14/20 (70%), Positives = 18/20 (90%), Gaps = 1/20 (5%)
Query: 579 LSGGEKQRVAIALNSLVDKP 598
LSGGE+QRVAIA +LV++P
Sbjct: 142 LSGGERQRVAIA-RALVNQP 160
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 74.0 bits (182), Expect = 3e-14
Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 42/225 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG+GKST +R L R D +G I +I K ++ +R+ IG+V Q
Sbjct: 52 IGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
F SI NI +A A VK+ +I E L + A ++VK+
Sbjct: 112 PFAKSIYENITFALERAG---VKDKKVLDEIVETSL-----------KQAALWDQVKD-- 155
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
D+H+ L+ LSGG++QR+ IAR + P I+L+DE SALD
Sbjct: 156 ---DLHKSALT---------------LSGGQQQRLCIARAIAVKPDILLMDEPASALDPI 197
Query: 1109 TERNIQSALNRVCASRTTIIVAHRLSTIIHA-DEILVMHAGEIVE 1152
+ ++ + + + T IIV H + A D + G+++E
Sbjct: 198 STMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 277
Score = 74.1 bits (182), Expect = 3e-14
Identities = 67/257 (26%), Positives = 108/257 (42%), Gaps = 47/257 (18%)
Query: 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 970
G+++A+ + IA + + + G +GAGKST+ R SG + I + I
Sbjct: 14 SGSKEALNNINFIAPRNSRIAVI---GPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK 70
Query: 971 VSQASLRQAIGVVPQ--DTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPD 1028
+ +R+ +G+V Q D +F+ +++ +I + IN
Sbjct: 71 ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL----------------------- 107
Query: 1029 GYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIART 1088
G D + V A + E P LSGGEK+RVAIA
Sbjct: 108 GLDEE-----TVAHRVSSALHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGV 151
Query: 1089 LLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVM 1145
+ PQ+++LDE T+ LD + + + LN + + T I H+L + AD I VM
Sbjct: 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVM 211
Query: 1146 HAGEIVERGRHEELLER 1162
G IV G EE+ +
Sbjct: 212 DKGRIVAYGTVEEIFLQ 228
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 73.5 bits (180), Expect = 3e-14
Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 42/233 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ------NIKTVSQASLRQAIGVVPQDTVL 989
+G SG+GKST++++L R ++ I +D + +I + LR+ +G+V Q
Sbjct: 42 MGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNP 101
Query: 990 FNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
F + SI NI Y + +E +E ++I+ EE +++
Sbjct: 102 FPHLSIYDNIAYPLKSHGIKEKREI-------KKIV----------------EECLRKVG 138
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
++++R+ S +LSGG++QR+ IAR L P+++L+DE TS +D
Sbjct: 139 LWKEVYDRLNS-----------PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIV 187
Query: 1109 TERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ I+ + + +IV+H + AD + ++ GE+VE G E+
Sbjct: 188 NSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in the
import of very long-chain fatty acids (VLCFA) into the
peroxisome. The peroxisomal membrane forms a permeability
barrier for a wide variety of metabolites required for
and formed during fatty acid beta-oxidation. To
communicate with the cytoplasm and mitochondria,
peroxisomes need dedicated proteins to transport such
hydrophilic molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC) transporter
protein family. The disease is characterized by a
striking and unpredictable variation in phenotypic
expression. Phenotypes include the rapidly progressive
childhood cerebral form (CCALD), the milder adult form,
adrenomyeloneuropathy (AMN), and variants without
neurologic involvement (i.e. asymptomatic).
Length = 166
Score = 71.0 bits (175), Expect = 4e-14
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134
LSGGE+QR+A AR LL P+ V LDEATSALD ++E + L + T I V HR S
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGI--TVISVGHRPS 149
Query: 1135 TIIHADEIL 1143
D +L
Sbjct: 150 LWKFHDRVL 158
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 72.9 bits (179), Expect = 4e-14
Identities = 64/232 (27%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ-----NIKTVSQA-SLRQAIGVVPQD 986
L+ +G SGAGKS+++R+L SG + I + LR+ +G+V Q
Sbjct: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
Query: 987 TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
L+ + +Q I A R+L S+++
Sbjct: 91 YNLWPH---LTVQENLIEAPC--------------RVLGL-------------SKDQALA 120
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
A R+ + D Y L LSGG++QRVAIAR L+ PQ++L DE T+ALD
Sbjct: 121 RAEKLLKRLRLKPYADRYP-------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
Query: 1107 TKTERNIQSALNRVCASR-TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRH 1156
+ I S + + + T +IV H + A ++ M G IVE+G
Sbjct: 174 PEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
Score = 32.1 bits (73), Expect = 1.4
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 577 LKLSGGEKQRVAIALNSLVDKPLVFRWD 604
L LSGG++QRVAIA +L+ +P V +D
Sbjct: 140 LHLSGGQQQRVAIA-RALMMEPQVLLFD 166
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 286
Score = 73.7 bits (181), Expect = 6e-14
Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 49/259 (18%)
Query: 911 KGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-- 968
KGT + + E + Y VGQ+G+GKST+I+ + +G + +D+ I
Sbjct: 14 KGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITH 73
Query: 969 KTVSQA--SLRQAIGVVPQ--DTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERIL 1024
KT + +R+ IG+V Q ++ LF ++++ I + N
Sbjct: 74 KTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKN-------------------- 113
Query: 1025 SFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERG-LKLSGGEKQRV 1083
+ +EVK A H ++ G+ V + ++SGG+ +++
Sbjct: 114 ------------FKMNLDEVKNYA-----HRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154
Query: 1084 AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR--VCASRTTIIVAHRLSTII-HAD 1140
AI L P I++LDE T+ LD +++R + L ++T I+V+H ++ + +AD
Sbjct: 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYAD 214
Query: 1141 EILVMHAGEIVERGRHEEL 1159
E++VM G IV + +EL
Sbjct: 215 EVIVMKEGSIVSQTSPKEL 233
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 72.5 bits (178), Expect = 8e-14
Identities = 73/241 (30%), Positives = 108/241 (44%), Gaps = 59/241 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESG-----DIFID-----NQNIKTVSQASLRQAIGVVPQ 985
+G SG+GK+T++R + E+G DI ID +Q + Q LRQ +G V Q
Sbjct: 35 IGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ--LRQHVGFVFQ 92
Query: 986 DTVLF-NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044
+ LF + ++ NI + E +EA A R L A++ + +E
Sbjct: 93 NFNLFPHRTVLENIIEGPVIVKGEPKEEATARA----REL---------LAKVGLAGKET 139
Query: 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
S+P +LSGG++QRVAIAR L P+++L DE TSA
Sbjct: 140 --------------SYPR-----------RLSGGQQQRVAIARALAMRPEVILFDEPTSA 174
Query: 1105 LDTKTERNIQSALNRVCA----SRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEEL 1159
LD + + LN + RT +IV H +S AD + M G IVE+G + L
Sbjct: 175 LDPEL---VGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
Query: 1160 L 1160
Sbjct: 232 F 232
Score = 29.7 bits (67), Expect = 9.3
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 578 KLSGGEKQRVAIALNSLVDKPLVFRWD 604
+LSGG++QRVAIA +L +P V +D
Sbjct: 144 RLSGGQQQRVAIA-RALAMRPEVILFD 169
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 72.3 bits (178), Expect = 9e-14
Identities = 54/235 (22%), Positives = 103/235 (43%), Gaps = 49/235 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +GAGKST++ ++ R +SG+I ID + + L + + ++ Q+ N I
Sbjct: 33 IGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQE-----NHIN 87
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDG-YDTQYARINASEEEVKEAATS---- 1050
+ V++ ++ F G + R+ + + A
Sbjct: 88 SRLT----------VRD----------LVGF--GRFPYSQGRLTKEDRRIINEAIEYLHL 125
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
D+ +R L +LSGG++QR IA L + VLLDE + LD K
Sbjct: 126 EDLSDRYLD--------------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171
Query: 1111 RNIQSALNRVCA--SRTTIIVAHRLS-TIIHADEILVMHAGEIVERGRHEELLER 1162
I L R+ +T ++V H ++ ++D I+ + G++V++G +E+++
Sbjct: 172 VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 72.0 bits (177), Expect = 1e-13
Identities = 65/237 (27%), Positives = 99/237 (41%), Gaps = 59/237 (24%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN------QNIKTVSQASLRQAIGVV--- 983
L+ +G SGAGKS+++R+L SG + I + + LR+ +G+V
Sbjct: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 984 ----PQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINA 1039
P TV N I EA R+L
Sbjct: 91 YNLWPHLTVQ-QNLI-----------------EAPC------RVLGL------------- 113
Query: 1040 SEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLD 1099
S+++ A R+ + D + L LSGG++QRVAIAR L+ PQ++L D
Sbjct: 114 SKDQALARAEKLLERLRLKPYADRFP-------LHLSGGQQQRVAIARALMMEPQVLLFD 166
Query: 1100 EATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTIIH-ADEILVMHAGEIVERG 1154
E T+ALD + I S + + + T +IV H + A ++ M G IVE+G
Sbjct: 167 EPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
Score = 33.1 bits (76), Expect = 0.62
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 577 LKLSGGEKQRVAIALNSLVDKPLVFRWD 604
L LSGG++QRVAIA +L+ +P V +D
Sbjct: 140 LHLSGGQQQRVAIA-RALMMEPQVLLFD 166
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of
branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF and
LivG components of the E. coli branched-chain amino acid
transporter. MJ1267 contains an insertion from residues
114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 71.3 bits (176), Expect = 1e-13
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 47/234 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGVVPQDTVLFNN-S 993
+G +GAGK+T+ L+ F SG + D ++I + + R IG Q LF +
Sbjct: 32 IGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
+ N+ A + G AR E E +E A
Sbjct: 92 VLENVMVAAQART----------------------GSGLLLARARREEREARERA----- 124
Query: 1054 HERILSF---PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
E +L D D GE LS G+++R+ IAR L P+++LLDE + L E
Sbjct: 125 -EELLERVGLADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEE 178
Query: 1111 RN-----IQSALNRVCASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEE 1158
I+ L T ++V H + ++ AD + V+ G ++ G +E
Sbjct: 179 TEELAELIRE-LRE--RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 74.1 bits (182), Expect = 1e-13
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 40/229 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSI 994
VG +GAGK+T++R + +G + + +++ +S + + + VPQDT L F +
Sbjct: 35 VGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV 94
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
+ ++ R F D + V+ A +
Sbjct: 95 RQVVEMGR-----------------TPHRSRF-DTWT------ETDRAAVERAMERTGV- 129
Query: 1055 ERILSFPDGYDTQVGERGL-KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-RN 1112
Q +R + LSGGE+QRV +AR L +A ++LLDE T++LD + R
Sbjct: 130 -----------AQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRT 178
Query: 1113 IQSALNRVCASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELL 1160
++ V +T + H L + DE++++ G + G ++L
Sbjct: 179 LELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 72.2 bits (177), Expect = 1e-13
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 43/206 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST I+ L R ++ +G I +QNI K+ S LR +G+V Q
Sbjct: 56 IGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y +I+ +K+ T +I E+ L R A +E+K+
Sbjct: 116 PFPKSIYDNVTYGPKIHG----IKDKKTLDEIVEKSL-----------RGAAIWDELKD- 159
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
++ + LSGG++QR+ IAR L P ++L+DE TSALD
Sbjct: 160 -------------------RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP 200
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRL 1133
+ ++ + + + IIV H +
Sbjct: 201 ISTLKVEELVQELKKDYSIIIVTHNM 226
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 73.7 bits (181), Expect = 1e-13
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 57/236 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF----- 990
+G SG GKST++R+L F +G I +D ++ V ++ I ++ Q LF
Sbjct: 51 LGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PPYQRPINMMFQSYALFPHMTV 108
Query: 991 NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
+I F ++ ++ +E I + E+
Sbjct: 109 EQNIAFGLKQDKLPKAE-----------------------------IASRVNEMLGLVHM 139
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+ +R + +LSGG++QRVA+AR+L K P+++LLDE ALD K
Sbjct: 140 QEFAKR--------------KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLR 185
Query: 1111 RNIQ----SALNRVCASRTTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEELLE 1161
+Q L RV T ++V H + + A I +M+ G+ V+ G EE+ E
Sbjct: 186 DRMQLEVVDILERVGV--TCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 74.6 bits (184), Expect = 1e-13
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++GAGKST++++L + +SG++ K + L Q + P+ TVL + I+
Sbjct: 35 VGRNGAGKSTLLKILAGELEPDSGEVTRP----KGLRVGYLSQEPPLDPEKTVL-DYVIE 89
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+ + A EE D + ++ E +
Sbjct: 90 GFGELRELLAELEEAYALLADPDDELL-----AELEALLEELDGWTLEARAEEALLG--- 141
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
L FPD D V LSGG ++RVA+AR LL+ P ++LLDE T+ LD ++
Sbjct: 142 --LGFPD-EDRPVSS----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLES 188
Score = 56.5 bits (137), Expect = 6e-08
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 72/240 (30%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSI 994
VG +GAGKST+++LL SG + + +K IG Q L +
Sbjct: 354 VGPNGAGKSTLLKLLAGELGPLSGTV-KVGETVK----------IGYFDQHRDELDPDKT 402
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA-----T 1049
EE+ E D E+EV+ T
Sbjct: 403 VL-----------EELSEGFPDGD----------------------EQEVRAYLGRFGFT 429
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
D + + LSGGEK R+ +A+ LL+ P ++LLDE T+ LD ++
Sbjct: 430 GEDQEKPVGV---------------LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474
Query: 1110 ERNIQSALNRVCASRTTIIVAH-R--LSTIIHADEILVMHAGEIVERGRHEELLERNGVY 1166
++ AL T ++V+H R L + A I ++ G +E+ LE+
Sbjct: 475 LEALEEALLDF--EGTVLLVSHDRYFLDRV--ATRIWLVEDKVEEFEGGYEDYLEQKKER 530
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 71.4 bits (175), Expect = 2e-13
Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 41/234 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNIKTVSQ--ASLRQAIGVVPQDTV 988
+G SG GKST +R R D G++ ID ++ +V LR +G+V Q
Sbjct: 37 IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
F SI N+ Y +H G +++ E V+++
Sbjct: 97 PFPKSIYDNVAYG---------------PKLH--------GLAKNKKKLD---EIVEKSL 130
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
TS + E + ++ + +LSGG++QR+ IAR + P ++L+DE SALD
Sbjct: 131 TSVGLWEEL-------GDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183
Query: 1109 TERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
I++ + + + T I+V H + +D + +G IVE +E+ +
Sbjct: 184 ATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 72.5 bits (177), Expect = 2e-13
Identities = 83/322 (25%), Positives = 137/322 (42%), Gaps = 52/322 (16%)
Query: 848 FDALTRYLEA-SLVPLPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFG 906
F L +Y A + + LPK+ A E + L K T++ L + + E F
Sbjct: 34 FQKLNKYQRAFAWLKLPKQKKA-ELKQF-----LNKKKTQVDLLKEDFNHANVFEIRNFN 87
Query: 907 FRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDV-----ESGDI 961
F T+ + L + +++ + +G SG GKST +R L + D+ G+I
Sbjct: 88 FWYMNRTKHVLHDLNLDIKRNKVTAF---IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI 144
Query: 962 FI--DNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADI 1019
+ N K +S LR IG+V Q F SI N+ Y N + K I
Sbjct: 145 YFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRK-------I 197
Query: 1020 HERILSFPDGYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGE 1079
E+I+ E+ +K AA ++ + + + G LSGG+
Sbjct: 198 LEKIV----------------EKSLKSAALWDEVKD-----------DLDKAGNALSGGQ 230
Query: 1080 KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH- 1138
+QR+ IAR + P+++L+DE TSALD I+ + + + IIV H ++
Sbjct: 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRI 290
Query: 1139 ADEILVMHAGEIVERGRHEELL 1160
+DE + + G I E G + +
Sbjct: 291 SDETVFFYQGWIEEAGETKTIF 312
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been shown
to be involved in the regulation of lipid-trafficking
mechanisms in macrophages, hepatocytes, and intestinal
mucosa cells. ABCG1 (ABC8), the human homolog of the
Drosophila white gene is induced in monocyte-derived
macrophages during cholesterol influx mediated by
acetylated low-density lipoprotein. It is possible that
human ABCG1 forms heterodimers with several heterologous
partners.
Length = 226
Score = 70.4 bits (173), Expect = 2e-13
Identities = 59/230 (25%), Positives = 93/230 (40%), Gaps = 61/230 (26%)
Query: 937 GQSGAGKSTIIRLL---FRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 993
G SG+GK+T++ + SG I + Q K ++ + V QD
Sbjct: 40 GSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQKCVAYVRQDD------ 90
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA-- 1051
I V+E T I L P R ++ K
Sbjct: 91 ---------ILLPGLTVRETLTYTAI----LRLP--------RKSSDAIRKKRVEDVLLR 129
Query: 1052 DIHERILSFPDGYDTQVGERGLK-LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
D+ T++G +K +SGGE++RV+IA LL P++++LDE TS LD+ T
Sbjct: 130 DLA----------LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179
Query: 1111 RNIQSALNRVCASRTTIIVAHRLSTIIHA---------DEILVMHAGEIV 1151
N+ S L+++ +I+ IH D IL++ +GEIV
Sbjct: 180 LNLVSTLSQLARRNRIVILT------IHQPRSDLFRLFDRILLLSSGEIV 223
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 70.9 bits (174), Expect = 2e-13
Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 55/238 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQASLRQAIGVV-------PQD 986
+G SG+GKST++R + + ++ SGD+ +D + V + +RQ G+V P
Sbjct: 33 IGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92
Query: 987 TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
T L N + F R AS+EE ++ A +E
Sbjct: 93 TALEN--VMFGPLRVR-GASKEEAEKQA------------------------------RE 119
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
+ ER +P +LSGG++QRVAIAR L P+++L DE TSALD
Sbjct: 120 LLAKVGLAERAHHYPS-----------ELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
Query: 1107 TKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ + + + T +IV H + A ++ + G I E G + L++
Sbjct: 169 PELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
Score = 30.1 bits (68), Expect = 6.6
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 567 LGKNTVGERG----LKLSGGEKQRVAIALNSLVDKP 598
L K + ER +LSGG++QRVAIA +L KP
Sbjct: 121 LAKVGLAERAHHYPSELSGGQQQRVAIA-RALAVKP 155
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 289
Score = 71.2 bits (174), Expect = 3e-13
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 50/236 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDN----QNIKTVSQAS-LRQAIGVVPQ--DTV 988
+G +G+GKST+I+L E+G + + N+K + + LR+ IG+V Q +
Sbjct: 43 IGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
LF +I+ +I + +N E + +E K+
Sbjct: 103 LFQETIEKDIAFGPVNLGENK-------------------------------QEAYKKVP 131
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
+ + P+ Y V +LSGG+K+RVA+A + ++LDE T LD K
Sbjct: 132 ELLKL----VQLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184
Query: 1109 TER---NIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
E N+ LN+ R I+V H + ++ ADE++VMH G+++ G E+
Sbjct: 185 GEEDFINLFERLNKEYKKR-IIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 70.6 bits (173), Expect = 4e-13
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 43/231 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G++G+GKST+ ++L + SG++ ID+ + + Q I ++ QD
Sbjct: 45 IGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQD--------- 95
Query: 996 FNIQYARINASEEEVKEAATSADIHERI---LSFPDGYDTQYARINASEEEVKEAATSAD 1052
+TS + +RI L FP +T + + E + T
Sbjct: 96 -----------------PSTSLNPRQRISQILDFPLRLNTD---LEPEQREKQIIETLRQ 135
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ PD L+ G+KQR+ +AR L+ P++++ DEA ++LD
Sbjct: 136 VGLL----PD----HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQ 187
Query: 1113 IQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ + + + + + I V L + H +D++LVMH GE+VERG ++L
Sbjct: 188 LINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 70.2 bits (172), Expect = 5e-13
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 47/233 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G++G+GKST+ ++L + SG+I I++ + + + I ++ QD +
Sbjct: 45 IGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDP-----NTS 99
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N R+ + IL FP R+N E + +
Sbjct: 100 LN---PRLRIGQ---------------ILDFP-------LRLNTDLEPEQRRKQIFETLR 134
Query: 1056 RILSFPD--GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ PD Y + L+ G+KQRVA+AR L+ P+I++ DEA ++LD +
Sbjct: 135 MVGLLPDHANYYPHM------LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL 188
Query: 1114 QSALNRVCASR-----TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+N + + + I V + I H +D++LVMH GE+VERG ++L
Sbjct: 189 ---INLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 70.0 bits (171), Expect = 6e-13
Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 45/234 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST++R L R D+ G + Q++ K V +R+ IG+V Q
Sbjct: 40 IGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F+ SI N+ + R+N + D+ +R+ + ++ A
Sbjct: 100 PFSMSIFDNVAFGLRLNRYK---------GDLGDRV-----------------KHALQGA 133
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ +++ GL LSGG++QR+ IAR + P+++LLDE SALD
Sbjct: 134 ALWDEVKDKLKV-----------SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDP 182
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLE 1161
R ++ + + T +V H + I + + +I + R L+E
Sbjct: 183 IATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 69.7 bits (170), Expect = 7e-13
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 49/239 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST I+ L R ++E G + QNI ++ LR+ IG+V Q
Sbjct: 39 IGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI N+ Y RI+A + AD+ E + E +K A
Sbjct: 99 PFPMSIYENVAYGVRISAKLPQ-------ADLDEIV-----------------ESALKGA 134
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ +++ + L LSGG++QR+ IAR L P+++L+DE SALD
Sbjct: 135 ALWQEVKDKL-----------NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP 183
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA------GEIVERGRHEELL 1160
++ ++ + + T IV H + + + G++VE G ++
Sbjct: 184 IATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase
components [General function prediction only].
Length = 501
Score = 71.8 bits (177), Expect = 1e-12
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 46/222 (20%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK-TVSQASLRQAIGVVPQDTVLFNN-SI 994
G++GAGKST++++LF Y +SG+I +D + ++ + ++R IG+V Q +L ++
Sbjct: 37 GENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV 96
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
NI I E I + +KE +
Sbjct: 97 AENI----ILGLE---------PSKGGLI------------DRRQARARIKELS------ 125
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
P D +V + LS GE+QRV I + L + ++++LDE T+ L T +
Sbjct: 126 -ERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVL---TPQEAD 177
Query: 1115 S---ALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIV 1151
L R+ A TII + H+L ++ AD + V+ G++V
Sbjct: 178 ELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
Score = 46.0 bits (110), Expect = 1e-04
Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 47/228 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGV--VPQD-----TV 988
G +G G+S ++ + SG I ++ +++ R+ +G+ VP+D V
Sbjct: 290 AGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLV 349
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
L + S+ N+ R + K + + R + ++AR E +V+
Sbjct: 350 L-DLSLAENLVLGRHDK-----KPFSRGGFLDRRAI-------RKFARELIEEFDVR--- 393
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
D LSGG +Q++ +AR L + P +++ + T LD
Sbjct: 394 ------------APSPDAPARS----LSGGNQQKLILARELARRPDLLIAAQPTRGLDVG 437
Query: 1109 TERNIQSALNRVCASRTTIIVAHRLSTIIH-----ADEILVMHAGEIV 1151
I L + + +++ +S + +D I V++ G IV
Sbjct: 438 AIEFIHERLLELRDAGKAVLL---ISEDLDEILELSDRIAVIYEGRIV 482
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 68.5 bits (168), Expect = 1e-12
Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 55/233 (23%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIK 995
G SGAGKST++ L+ F SG + ++ Q+ T + R+ + ++ Q+ LF++ ++
Sbjct: 32 GPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVA 89
Query: 996 FNIQYA-----RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
NI ++NA++ E I ++ G + AR+
Sbjct: 90 QNIGLGLNPGLKLNAAQRE-----KLHAIARQM-----GIEDLLARLPG----------- 128
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+LSGG++QRVA+AR L++ I+LLDE SALD
Sbjct: 129 -----------------------QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165
Query: 1111 RNIQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ + + +++VC R T ++V+H L A LV+ G I G +ELL
Sbjct: 166 QEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 68.9 bits (168), Expect = 1e-12
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 44/234 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST +R L R D VE G++ + +NI LR+ IG+V Q
Sbjct: 39 IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98
Query: 989 LFNNSIKFNIQYA-RINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI NI Y +I+ ++++ K + E + E+ +K++
Sbjct: 99 PFLMSIYDNISYGPKIHGTKDKKK-------LDEIV-----------------EQSLKKS 134
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
A ++ +++ L LSGG++QR+ IARTL P ++L+DE TSALD
Sbjct: 135 ALWNEVKDKL-----------NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP 183
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ I+ + + S T IIV H + +D G I E +EL
Sbjct: 184 ISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat)
retrotransposon and non-LTR retrovirus reverse
transcriptase (RT). This subfamily contains both non-LTR
retrotransposons and non-LTR retrovirus RTs. RTs
catalyze the conversion of single-stranded RNA into
double-stranded DNA for integration into host
chromosomes. RT is a multifunctional enzyme with
RNA-directed DNA polymerase, DNA directed DNA polymerase
and ribonuclease hybrid (RNase H) activities.
Length = 220
Score = 67.7 bits (166), Expect = 2e-12
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 856 EASLVPLPKKTNAKEC---RTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKG 912
+A ++ +PKK + R IS + L K + +I+ R+ +EEN+ +QFGFR G+
Sbjct: 1 KARIILIPKKGKPSDPKNYRPISLLSVLYKLLEKILANRLRPVLEENILPNQFGFRPGRS 60
Query: 913 TRDAIGCLRMIALESQ 928
T DAI LR + +++
Sbjct: 61 TTDAILLLREVIEKAK 76
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 68.4 bits (167), Expect = 2e-12
Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 60/244 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKTVSQASLRQAIGVVPQ----- 985
+G SG+GKST++R+ R ++ SG++++D Q+I + LR+ + +V Q
Sbjct: 35 MGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94
Query: 986 -DTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044
+ +F N + ++ R+ S++E+ +E V
Sbjct: 95 PNLSIFEN-VALGLKLNRLVKSKKEL------------------------------QERV 123
Query: 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
+ A A + + + D D G KLSGG++QR+ IAR L P+++L DE T+
Sbjct: 124 RWALEKAQLWDEV---KDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLADEPTAN 176
Query: 1105 LDTKTERNIQSALNRVCASRTTIIVAH------RLSTIIHADEILVMHAGEIVERGRHEE 1158
LD + I+S + T ++V H R+S D + ++ G+IVE G E
Sbjct: 177 LDPENTAKIESLFLELKKDMTIVLVTHFPQQAARIS-----DYVAFLYKGQIVEWGPTRE 231
Query: 1159 LLER 1162
+
Sbjct: 232 VFTN 235
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 283
Score = 68.7 bits (168), Expect = 2e-12
Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 46/232 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIGVVPQ--DTVLFN 991
+G +GAGKST+ + L SG I D + I + LR+++G+V Q D LF+
Sbjct: 38 LGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97
Query: 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
S+ ++ + +N E ++ +R+ A E +K+ T
Sbjct: 98 ASVYQDVSFGAVNLKLPE-------DEVRKRV---------DNALKRTGIEHLKDKPTHC 141
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
LSF G+K+RVAIA L+ P++++LDE T+ LD
Sbjct: 142 ------LSF-----------------GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 1112 NIQSALNRVCASR--TTIIVAHRLSTI-IHADEILVMHAGEIVERGRHEELL 1160
I L + T II H + + ++ D + VM G ++ +G +E+
Sbjct: 179 EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 287
Score = 68.7 bits (168), Expect = 2e-12
Identities = 61/257 (23%), Positives = 116/257 (45%), Gaps = 56/257 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQA--SLRQAIGVVPQ--DTVL 989
VG +G+GKST+++ SG I I +I +T ++ LR+ + +V Q + L
Sbjct: 39 VGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL 98
Query: 990 FNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F N++ ++++ N SE+E KE A + +K+
Sbjct: 99 FENTVLKDVEFGPKNFGFSEDEAKEKAL--------------------------KWLKKV 132
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
S D+ + +LSGG+ +RVAIA + P+I+ LDE + LD
Sbjct: 133 GLSEDLISK--------------SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178
Query: 1108 KTERNI-QSALNRVCASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELLERNGV 1165
+ + + Q + A T I+V H + + +AD++LV+ G++++ +E+
Sbjct: 179 EGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD--- 235
Query: 1166 YASMWIQQNTKQSEPSS 1182
W++++ EP++
Sbjct: 236 --KEWLKKHY-LDEPAT 249
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease
and ATPase components [General function prediction only].
Length = 604
Score = 70.4 bits (173), Expect = 3e-12
Identities = 31/59 (52%), Positives = 36/59 (61%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 1132
LSGGE+QR+A AR LL P+ V LDEATSALD +TE + L T I V HR
Sbjct: 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
Score = 30.4 bits (69), Expect = 7.2
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFI-DNQNIKTVSQA------SLRQAI 980
LL G+SGAGK++++R L + SG I + + + + Q +LR+A+
Sbjct: 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREAL 476
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 67.8 bits (166), Expect = 3e-12
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 42/206 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST++R L R ++V G++ +D +++ V ++R+ IG+V Q
Sbjct: 36 IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95
Query: 989 LFNN-SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F SI+ N+ A + + K+ ++ E+ L + ++ EVK+
Sbjct: 96 PFPTMSIRDNV-VAGLKLNGVRNKKDLD--ELVEKSLRGANLWN-----------EVKD- 140
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
++ + G LSGG++QR+ IAR + P ++L+DE SALD
Sbjct: 141 -------------------RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP 181
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRL 1133
+ I+ +N + T +IV H +
Sbjct: 182 ISTLAIEDLINELKQDYTIVIVTHNM 207
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 70.1 bits (172), Expect = 4e-12
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 46/235 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQDTVLFNN 992
VG+SG+GKST L R + + G+I+ D Q + +++ L R I VV QD N+
Sbjct: 318 VGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP---NS 373
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
S+ + +I V + SA E ++ A EEV
Sbjct: 374 SLNPRLNVLQIIEEGLRVHQPTLSAAQRE-------------QQVIAVMEEV-------- 412
Query: 1053 IHERILSFPDGYDTQVGER-GLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
G D + R + SGG++QR+AIAR L+ P +++LDE TS+LD +
Sbjct: 413 ----------GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462
Query: 1112 NIQSALNRVCASR--TTIIVAHRLSTI---IHADEILVMHAGEIVERGRHEELLE 1161
I + L + + ++H L + H +++V+ GE+VE+G E +
Sbjct: 463 QILALLKSLQQKHQLAYLFISHDLHVVRALCH--QVIVLRQGEVVEQGDCERVFA 515
Score = 59.3 bits (144), Expect = 8e-09
Identities = 76/274 (27%), Positives = 119/274 (43%), Gaps = 61/274 (22%)
Query: 906 GFRKGKGTRDAIG--CLRMIALESQLVWYLLQVGQSGAGKS----TIIRLLFRFYDV-ES 958
FR+ + R + L++ A E+ L VG+SG+GKS +I+RLL V S
Sbjct: 14 AFRQQQTVRTVVNDVSLQIEAGET-----LALVGESGSGKSVTALSILRLLPSPPVVYPS 68
Query: 959 GDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINAS-----EEEVKEA 1013
GDI +++ S+ +LR G N I Q ++ + E+++ E
Sbjct: 69 GDIRFHGESLLHASEQTLRGVRG----------NKIAMIFQEPMVSLNPLHTLEKQLYE- 117
Query: 1014 ATSADIHERILSFPDGYDTQYAR--INASEEEV--KEAATSADIHERILSFPDGYDTQVG 1069
+LS G + AR I + V ++AA R+ +P
Sbjct: 118 ---------VLSLHRGMRREAARGEILNCLDRVGIRQAAK------RLTDYPH------- 155
Query: 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN--RVCASRTTI 1127
+LSGGE+QRV IA LL P++++ DE T+ALD + I L + + +
Sbjct: 156 ----QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLL 211
Query: 1128 IVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ H LS + AD + VM G VE+ R L
Sbjct: 212 FITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF 245
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 67.5 bits (166), Expect = 4e-12
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 1075 LSGGEKQRVAIARTLL------KAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TT 1126
LSGGE+QRV +AR L P+ +LLDE TSALD + ++ ++ R
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194
Query: 1127 IIVAHRLS-TIIHADEILVMHAGEIVERGRHEELL 1160
I+V H L+ +AD I+++H G +V G E+L
Sbjct: 195 IVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
Score = 39.0 bits (92), Expect = 0.009
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 989
+G +GAGKST++R L +SG++ ++ + + S A L + V+PQ + L
Sbjct: 34 LGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSL 87
Score = 30.5 bits (70), Expect = 4.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 579 LSGGEKQRVAIA 590
LSGGE+QRV +A
Sbjct: 135 LSGGEQQRVQLA 146
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in peptide
antibiotic resistance. Bacitracin is a dodecapeptide
antibiotic produced by B. licheniformis and B. subtilis.
The synthesis of bacitracin is non-ribosomally catalyzed
by a multi-enzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein.
Length = 208
Score = 66.5 bits (163), Expect = 4e-12
Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 46/221 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +GAGK+T ++++ +SG+I D ++ + +A R IG + + + N
Sbjct: 32 LGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR--IGALIEAPGFYPNL-- 87
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+ E ++ + R+L RI+ + V ++ +
Sbjct: 88 ---------TARENLR-------LLARLLGIRK------KRIDEVLDVVGLKDSA---KK 122
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
++ F S G KQR+ IA LL P +++LDE T+ LD + ++
Sbjct: 123 KVKGF---------------SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRE 167
Query: 1116 ALNRVCASRTTIIVA-HRLSTI-IHADEILVMHAGEIVERG 1154
+ + T++++ H LS I AD I +++ G+++E G
Sbjct: 168 LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 67.4 bits (165), Expect = 5e-12
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 37/222 (16%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNN- 992
+G +GAGKST++ + SG I ID ++ S A + V QD +
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
+I+ N+ A K +SA R SF E +
Sbjct: 98 TIEENLALAESRGK----KRGLSSALNERRRSSF--------------RERLARLG---- 135
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
L + ++G LSGG++Q +++ L P+I+LLDE T+ALD KT
Sbjct: 136 -----LGLENRLSDRIG----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 1113 IQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIV 1151
+ ++ TT++V H + + + ++++H+G+IV
Sbjct: 187 VMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 67.4 bits (165), Expect = 5e-12
Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 40/222 (18%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVLFNNS 993
G+SG GKST+ RLL G++ + + +++A + R+ I +V QD++ N
Sbjct: 45 GRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
K + E S D ER+ AR + V + D
Sbjct: 105 RK------TVREIIREPLRHLLSLDKAERL-----------ARASEMLRAVDLDDSVLD- 146
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+R +LSGG+ QRV +AR L P++++LDEA S LD + +
Sbjct: 147 ----------------KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV 190
Query: 1114 QSALNRVCASRTT--IIVAHRLSTIIH-ADEILVMHAGEIVE 1152
L ++ T + + H L + ++VM G+IVE
Sbjct: 191 IRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This
model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small molecules,
including ions from the external milieu and the other
group which is engaged in the efflux of small molecular
weight compounds and ions from within the cell. Energy
derived from the hydrolysis of ATP drive the both the
process of uptake and efflux [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 190
Score = 65.5 bits (160), Expect = 5e-12
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 45/200 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQ--DTVLF 990
+G +GAGKST++ L +SG + ID + + S+ L RQ +G+V Q D LF
Sbjct: 24 LGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD-YSRKGLLERRQRVGLVFQDPDDQLF 82
Query: 991 NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
+ ++ + +N E A++ R V+EA T+
Sbjct: 83 AADVDQDVAFGPLNLGLSE-------AEVERR---------------------VREALTA 114
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
G + LSGGEK+RVAIA + P ++LLDE T+ LD
Sbjct: 115 VGA--------SGLRERPTH---CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163
Query: 1111 RNIQSALNRVCASRTTIIVA 1130
+ + L R+ A T++++
Sbjct: 164 EQMLAILRRLRAEGMTVVIS 183
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein
UrtE. Members of this protein family are ABC transporter
ATP-binding subunits associated with urea transport and
metabolism. This protein is found in a conserved
five-gene transport operon typically found adjacent to
urease genes. It was shown in Cyanobacteria that
disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 230
Score = 66.4 bits (163), Expect = 5e-12
Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 46/228 (20%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-KTVSQASLRQAIGVVPQDTVLFNNSIK 995
G++G GK+T+++ L V+SG I +D ++I K R I VPQ +F
Sbjct: 33 GRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIF----- 87
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+ E +L+ G S I +
Sbjct: 88 -------------------PRLTVEENLLT---GLAAL-------------PRRSRKIPD 112
Query: 1056 RILS-FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
I FP + G RG LSGG++Q++AIAR L+ P+++LLDE T + ++I
Sbjct: 113 EIYELFPVLKEML-GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171
Query: 1115 SALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEEL 1159
+ R+ A ++V L AD VM G +V G +EL
Sbjct: 172 RVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined based
on five such organisms, four of which are lacking all
F420 biosynthetic capability save the final side-chain
polyglutamate attachment step (via the gene cofE:
TIGR01916). In Jonesia denitrificans DSM 20603 and marine
actinobacterium PHSC20C1 this cassette is in an apparent
operon with the cofE gene and, in PHSC20C1, also with a
F420-dependent glucose-6-phosphate dehydrogenase
(TIGR03554). Based on these observations we propose that
this ATP-binding protein is a component of an F420-0
(that is, F420 lacking only the polyglutamate tail)
transporter.
Length = 256
Score = 67.1 bits (164), Expect = 6e-12
Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 44/243 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +G+GKST++RLL ++G + + ++ +S+ + + + +V QD +
Sbjct: 33 LGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQD-----SDTA 87
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+ V++ I R L +A + + V + A +
Sbjct: 88 VPLT----------VRDVVALGRIPHRSL---------WAGDSPHDAAVVDRALAR---T 125
Query: 1056 RILSFPD-GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
+ D T LSGGE+QRV +AR L + P+++LLDE T+ LD + +
Sbjct: 126 ELSHLADRDMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 1115 SALNRVCASRTTIIVA-HRLS-TIIHADEILVMHAGEIVERGRHEELLERN------GVY 1166
+ + + A+ T++ A H L+ + D ++V+ G +V G E+L GV
Sbjct: 178 ALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGVD 237
Query: 1167 ASM 1169
A++
Sbjct: 238 ATV 240
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 282
Score = 67.1 bits (164), Expect = 6e-12
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 1132
LSGG+KQRVAIA L P+I++LDE+TS LD + I + ++ T I + H
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203
Query: 1133 LSTIIHADEILVMHAGEIVERGRHEELLER 1162
+ AD++LV+ G+++ +G E+ +
Sbjct: 204 IDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 320
Score = 67.2 bits (164), Expect = 9e-12
Identities = 61/257 (23%), Positives = 111/257 (43%), Gaps = 58/257 (22%)
Query: 936 VGQSGAGKSTIIR-----LLFRFYDVESGDIFIDNQNIKTVSQAS-----------LRQA 979
+G SG+GKST++ + ++ ++ GDI+I ++ + LR+
Sbjct: 58 IGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117
Query: 980 IGVVPQ--DTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARI 1037
+ +V Q + LF ++I+ +I + + ++ EA A + + G D Y
Sbjct: 118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKS-EAKKLAKFYLNKM----GLDDSYLER 172
Query: 1038 NASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVL 1097
+ LSGG+K+RVAIA L P+I++
Sbjct: 173 SPFG---------------------------------LSGGQKRRVAIAGILAIQPEILI 199
Query: 1098 LDEATSALDTKTERN-IQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGR 1155
DE T+ LD K E +Q L+ ++T ++ H + ++ ADE++VM G+I++ G
Sbjct: 200 FDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
Query: 1156 HEELLERNGVYASMWIQ 1172
E+ + S IQ
Sbjct: 260 PYEIFTDQHIINSTSIQ 276
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein;
Reviewed.
Length = 375
Score = 68.1 bits (167), Expect = 9e-12
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR----TTIIVA 1130
LSGG++QRVAIAR ++ P+++LLDE+ SALD K + +Q+ L + R T + V
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKAL--QRKLGITFVFVT 202
Query: 1131 H-RLSTIIHADEILVMHAGEIVERGRHEELLER 1162
H + + +D I+VM G I + G E+ E
Sbjct: 203 HDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235
Score = 40.3 bits (95), Expect = 0.005
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990
G SG GK+T++RL+ F +SG I +D Q+I V A R + V Q LF
Sbjct: 47 GPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AENRH-VNTVFQSYALF 98
Score = 34.9 bits (81), Expect = 0.26
Identities = 14/22 (63%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLV 600
LSGG++QRVAIA ++V+KP V
Sbjct: 145 LSGGQQQRVAIA-RAVVNKPKV 165
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems,
ATPase component [Amino acid transport and metabolism].
Length = 250
Score = 66.1 bits (162), Expect = 9e-12
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 38/234 (16%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVP--QDTVLFNNS 993
+G +GAGK+T+ L+ FY SG + ++I + +G+ Q T LF
Sbjct: 36 IGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP-PHRIARLGIARTFQITRLFPGL 94
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
E V A + +L P R E E +E A
Sbjct: 95 -----------TVLENVAVGAHARLGLSGLLGRP--------RARKEEREARERA----- 130
Query: 1054 HERILSF---PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+L F + D G LS G+++R+ IAR L P+++LLDE + L+ +
Sbjct: 131 -RELLEFVGLGELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEET 185
Query: 1111 RNIQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
+ + + T +++ H + ++ AD I+V++ GE++ G EE+
Sbjct: 186 EELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 67.7 bits (165), Expect = 1e-11
Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 56/240 (23%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFY--DVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990
L +G+SG GK+T++R + F +G I I ++++ ++ + ++ Q+ LF
Sbjct: 34 LALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP--PHKRGLALLFQNYALF 91
Query: 991 -----NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
+++ F ++ ++ ADI ER V
Sbjct: 92 PHLKVEDNVAFGLRAQKM-----------PKADIAER---------------------VA 119
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
+A + + P +LSGG +QR+AIAR + P ++LLDE SAL
Sbjct: 120 DALKLVGLGDAAAHLPA-----------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 1106 DTKTERNIQS---ALNRVCASRTTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEELLE 1161
D N++ AL+ T + V H + + AD+ +M G + G + L +
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 66.1 bits (162), Expect = 1e-11
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 51/241 (21%)
Query: 937 GQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 994
G +G+GKST+ + Y+V G+I D ++I +S R G+ + F +
Sbjct: 37 GPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE-RARAGI----FLAFQYPV 91
Query: 995 KF----NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
+ N + R AA +A R + +E+KE A
Sbjct: 92 EIPGVTNSDFLR----------AAMNARRGARGILP------------EFIKELKEKAEL 129
Query: 1051 ADIHERILSFPDGYDTQVGERGL--KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
+ E L ER + SGGEK+R I + LL P++ +LDE S LD
Sbjct: 130 LGLDEEFL-----------ERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDID 178
Query: 1109 TERNIQSALNRVCAS-RTTIIVAH--RLSTIIHADEILVMHAGEIVERGRHE--ELLERN 1163
+ + +N + R +I+ H RL I D++ V++ G IV+ G E E LE
Sbjct: 179 ALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEEK 238
Query: 1164 G 1164
G
Sbjct: 239 G 239
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This
family represents the NikE subunit of a multisubunit
nickel import ABC transporter complex. Nickel, once
imported, may be used in urease and in certain classes of
hydrogenase and superoxide dismutase [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 265
Score = 66.4 bits (162), Expect = 1e-11
Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 40/223 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---LRQAIGVVPQDTVLFNN 992
+G+SG GKST+ RLL G + Q++ + + R+ + +V QD+
Sbjct: 43 LGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSP---- 98
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
N + + E TS D E+ ARI + V + AD
Sbjct: 99 -SAVNPRMT-VRQIIGEPLRHLTSLDESEQK-----------ARIAELLDMVGLRSEDAD 145
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
R +LSGG+ QR+ IAR L P++++LDEA S LD +
Sbjct: 146 KLPR-----------------QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188
Query: 1113 IQSALNRVCASRTT--IIVAHRLSTIIH-ADEILVMHAGEIVE 1152
I L ++ + T + + H L + + VM G+IVE
Sbjct: 189 ILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 68.3 bits (167), Expect = 1e-11
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 46/237 (19%)
Query: 936 VGQSGAGKSTIIRLLFRF-------YDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV 988
VG SGAGK+T+ +++ +V GD ++D + ++ IG++ Q+
Sbjct: 316 VGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
L+ + + + EA L PD + AR+ A +K
Sbjct: 376 LYPHRTVL-----------DNLTEAIG--------LELPD----ELARMKAVIT-LKMVG 411
Query: 1049 TSADIHERILS-FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
+ E IL +PD +LS GE+ RVA+A+ L+K P+IV+LDE T +D
Sbjct: 412 FDEEKAEEILDKYPD-----------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460
Query: 1108 KTERNI-QSALN-RVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
T+ ++ S L R +T IIV+H + ++ D +M G+IV+ G EE++E
Sbjct: 461 ITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
Score = 63.3 bits (154), Expect = 4e-10
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVAHRL 1133
LSGGEKQRV +AR L K P + L DE T LD +T + + +AL V AS ++++
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 1134 STIIH--ADEILVMHAGEIVERGRHEELLER 1162
+I +D+ + + GEI E G +E++
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259
Score = 32.5 bits (74), Expect = 1.6
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVFRWD 604
LSGGEKQRV +A L +P +F D
Sbjct: 169 LSGGEKQRVVLA-RQLAKEPFLFLAD 193
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins, Other].
Length = 230
Score = 65.6 bits (160), Expect = 1e-11
Identities = 65/270 (24%), Positives = 109/270 (40%), Gaps = 68/270 (25%)
Query: 920 LRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA 979
L+ + L Q ++ +G SG GKST++ L+ SG + ++ + I
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI---------TE 51
Query: 980 IGVVPQDTVLFNN-------SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDT 1032
G P V+F N +++ NI A V ER
Sbjct: 52 PG--PDRMVVFQNYSLLPWLTVRENIALA--------VDRVLPDLSKSER---------- 91
Query: 1033 QYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKA 1092
V+E H ++ + D + G+ LSGG KQRVAIAR L
Sbjct: 92 --------RAIVEE-------HIALVGLTEAADKRPGQ----LSGGMKQRVAIARALSIR 132
Query: 1093 PQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRL-STIIHADEILVM---- 1145
P+++LLDE ALD T N+Q L ++ T ++V H + ++ +D ++++
Sbjct: 133 PKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGP 192
Query: 1146 --HAGEIVE----RGRHEELLERNGVYASM 1169
+ G+I+E R R + + Y +
Sbjct: 193 AANIGQILEVPFPRPRDRLEVVEDPSYYDL 222
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 274
Score = 66.3 bits (162), Expect = 1e-11
Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 51/238 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD--TVLFNNS 993
+G +GAGKST++ L Y + G + + + + ++ +R +G+V QD +F+++
Sbjct: 37 LGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96
Query: 994 IKFNIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV--KEAAT 1049
+ ++ + +N ++EV+ R+ + + V +
Sbjct: 97 VWDDVAFGPVNMGLDKDEVER-----------------------RVEEALKAVRMWDFRD 133
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
H LS G+K+RVAIA L P +++LDE + LD +
Sbjct: 134 KPPYH--------------------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
Query: 1110 ERNIQSALNRVCASRTTIIVA-HRLSTIIH-ADEILVMHAGEIVERGRHEELLERNGV 1165
+ + L+R+ T+IVA H + AD+++V+ G ++ G L + + V
Sbjct: 174 QETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIV 231
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 65.8 bits (160), Expect = 2e-11
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 39/234 (16%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-------ASLRQAIGVVPQDTV 988
+G SG+GKST +R + G I ++ Q I V A Q + + T+
Sbjct: 37 IGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
+F + FN+ ++ + E V EA + S++E +E A
Sbjct: 97 VFQH---FNL-WSHMTVLEN-VMEAPIQV-------------------LGLSKQEARERA 132
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
+ L+ + G+ + LSGG++QRV+IAR L P+++L DE TSALD +
Sbjct: 133 ------VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186
Query: 1109 TERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ + ++ +T ++V H + H + ++ +H G+I E G E+L
Sbjct: 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 256
Score = 65.5 bits (160), Expect = 2e-11
Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 48/239 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-------ASLRQAIGVVPQDTV 988
+G SG+GKST +R + +G I ++ + I+ A RQ + + +
Sbjct: 38 IGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGM 97
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
+F + FN+ S V E A +H + S+ E E A
Sbjct: 98 VFQH---FNLW------SHMTVLENVIEAPVHV---------------LGVSKAEAIERA 133
Query: 1049 ----TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
I E+ ++P LSGG++QRVAIAR L P+++L DE TSA
Sbjct: 134 EKYLAKVGIAEKADAYP-----------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182
Query: 1105 LDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
LD + + + + RT ++V H + + ++ +H G+I E G E++
Sbjct: 183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241
Score = 29.7 bits (67), Expect = 8.6
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVFRWD 604
LSGG++QRVAIA +L +P V +D
Sbjct: 153 LSGGQQQRVAIA-RALAMEPEVMLFD 177
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 280
Score = 65.9 bits (161), Expect = 2e-11
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 50/237 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----ASLRQAIGVVPQ--DTVL 989
+G +G+GKSTI++LL + G + +D+ I + S+ +R+ +G+V Q ++ L
Sbjct: 39 IGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98
Query: 990 FNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
F ++ ++ + N S+EE + A E++
Sbjct: 99 FEETVLKDVAFGPQNFGVSQEEAEALA--------------------------REKLALV 132
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
S + E+ +LSGG+ +RVAIA L P+I++LDE T+ LD
Sbjct: 133 GISESLFEK--------------NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
Query: 1108 KTERNIQSALNRVCASRTTII-VAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162
K + + + ++ S TI+ V H + + +AD + V+ G++V G+ +++ +
Sbjct: 179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 64.9 bits (158), Expect = 2e-11
Identities = 57/241 (23%), Positives = 109/241 (45%), Gaps = 54/241 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKT--VSQASLRQAIGVV----- 983
+G SG GKST++R R ++ G++ + +NI + V +R+ +G+V
Sbjct: 36 MGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95
Query: 984 --PQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASE 1041
P T+ N +I ++ + S++E + ER+ E
Sbjct: 96 PFPHLTIYDNVAI--GVKLNGLVKSKKE---------LDERV-----------------E 127
Query: 1042 EEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101
+K+AA ++ +R+ +P LSGG++QR+ IAR L P+I+L+DE
Sbjct: 128 WALKKAALWDEVKDRLNDYPS-----------NLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 1102 TSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
T+ +D I+ L + T ++V H + +D + ++ G+++E G ++
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236
Query: 1161 E 1161
E
Sbjct: 237 E 237
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding
subunit. This model describes daunorubicin resistance
ABC transporter, ATP binding subunit in bacteria and
archaea. This model is restricted in its scope to
preferentially recognize the ATP binding subunit
associated with effux of the drug, daunorubicin. This
transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial ABC
transport system: an ATPase or ATP binding subunit; An
integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport and
binding proteins, Other].
Length = 302
Score = 65.1 bits (159), Expect = 4e-11
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 53/236 (22%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFNNSIK 995
G +GAGK+T IR+L SG + ++ V + +R++IG+VPQ
Sbjct: 26 GPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV--VREPRKVRRSIGIVPQYA-------- 75
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
V E T E + Y EE+ E
Sbjct: 76 -------------SVDEDLTG---RENLEMMGRLYGLPKDEAEERAEELLE--------- 110
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+ + D VG SGG ++R+ IA +L+ P ++ LDE T+ LD +T R I
Sbjct: 111 -LFELGEAADRPVGT----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165
Query: 1116 ALNRVCASRTTIIV-------AHRLSTIIHADEILVMHAGEIVERGRHEELLERNG 1164
+ + TI++ A +L D I ++ G I+ G EEL R G
Sbjct: 166 YIRALKEEGVTILLTTHYMEEADKL-----CDRIAIIDHGRIIAEGTPEELKRRLG 216
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 64.7 bits (157), Expect = 4e-11
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 41/232 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTVSQA-SLRQAIGVVPQDTVL 989
+G +G+GK+T +R L R D SGD+ + ++I R+ +G++ Q
Sbjct: 53 MGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112
Query: 990 FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
F SI N+ A + A +++ + AR+ E
Sbjct: 113 FPMSIMDNV-LAGVRA---------------HKLVPRKEFRGVAQARLT-------EVGL 149
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ +R+ P +LSGG++Q + +ARTL P+++LLDE TSALD T
Sbjct: 150 WDAVKDRLSDSP-----------FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTT 198
Query: 1110 ERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
I+ + + T IIV H L+ +D + G +VE G E+L
Sbjct: 199 TEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 65.2 bits (159), Expect = 6e-11
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 61/238 (25%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGVVPQDTVLFNN-S 993
+G +GAGKSTI R++ ++G I + + ++A L R IGVVPQ F+N
Sbjct: 73 LGPNGAGKSTIARMILGMTSPDAGKITV--LGVPVPARARLARARIGVVPQ----FDNLD 126
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
++F ++ E +L F +Y ++ E E +
Sbjct: 127 LEFTVR---------------------ENLLVF-----GRYFGMSTREIEA--------V 152
Query: 1054 HERILSFP---DGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
+L F D +V + LSGG K+R+ +AR L+ PQ+++LDE T+ LD
Sbjct: 153 IPSLLEFARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
Query: 1111 RNIQSALNRVCASRTTIIV-------AHRLSTIIHADEILVMHAGEIVERGRHEELLE 1161
I L + A TI++ A RL D + V+ AG + GR L++
Sbjct: 209 HLIWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLEAGRKIAEGRPHALID 261
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 64.7 bits (158), Expect = 7e-11
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122
+ + KLS G++ R +A LL P+++ LDE T LD + NI+ L
Sbjct: 145 DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE 204
Query: 1123 SRTTIIV--AHRLSTIIH-ADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTKQSE 1179
R ++ H I D +L++ G++V G +L E+ G Y ++ +S
Sbjct: 205 ERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSL 264
Query: 1180 PSSD 1183
Sbjct: 265 SQLA 268
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P lyase
systems for utilization of phosphonates. These systems
resemble phosphonatase-based systems in having a three
component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of a
transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 63.7 bits (155), Expect = 7e-11
Identities = 60/238 (25%), Positives = 96/238 (40%), Gaps = 46/238 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN-----IKTVSQAS----LRQAIGVVPQD 986
VG+SG+GKST++ L + G ++ + +S+A +R G V Q
Sbjct: 35 VGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ- 93
Query: 987 TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
N + + A+I ER+++ + Y I
Sbjct: 94 -----------------NPRDGLRMRVSAGANIGERLMAIGARH---YGNIR-------- 125
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
AT+ D E + P D SGG +QR+ IAR L+ P++V +DE T LD
Sbjct: 126 -ATAQDWLEEVEIDPTRIDDLPRA----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180
Query: 1107 TKTERNIQSALNRVC--ASRTTIIVAHRLSTI-IHADEILVMHAGEIVERGRHEELLE 1161
+ + L + IIV H L + A +LVM G +VE G +++L+
Sbjct: 181 VSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 64.0 bits (156), Expect = 9e-11
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 1132
LSGG+KQRVAIA L P+ ++ DE T+ LD R + + + + T I++ H
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204
Query: 1133 LSTIIHADEILVMHAGEIVERGRHEEL 1159
+ + AD I+VM +G++V G +E+
Sbjct: 205 MEEAVEADRIIVMDSGKVVMEGTPKEI 231
Score = 30.8 bits (70), Expect = 3.9
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG+KQRVAIA
Sbjct: 145 LSGGQKQRVAIA 156
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 64.7 bits (158), Expect = 2e-10
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122
G + +V + +LSGG++QRV+IAR L+ Q++L DE T ALD+ + + + L+++
Sbjct: 133 GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD 192
Query: 1123 -SRTTIIVAHRLSTIIHADEILVMHAGEIV 1151
T IIV H A+ ++ + GEIV
Sbjct: 193 RGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 62.3 bits (152), Expect = 2e-10
Identities = 50/216 (23%), Positives = 82/216 (37%), Gaps = 49/216 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFNNSI 994
VG +GAGK+T++ LL + SGD+ + + LR+ IG+V ++ +
Sbjct: 63 VGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV-------SSEL 115
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
+ E V++ S + + E AA
Sbjct: 116 HERFR------VRETVRDVVLSG-----------FFASIGIYQEDLTAEDLAAAQWLLE- 157
Query: 1055 ERILSFPDGYDTQVGERGLK-LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ +R LS GE++RV IAR L+K P++++LDE LD
Sbjct: 158 -------LLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI---AR 207
Query: 1114 QSALNRV------CASRTTIIVAHRLSTIIHADEIL 1143
+ LNR+ + + V H HA+EI
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTH------HAEEIP 237
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 61.0 bits (148), Expect = 3e-10
Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 48/207 (23%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---LRQAIGVVPQDT-VLFNN 992
G SGAGKST+++L+ +G I+ +I + LR+ IG++ QD +L +
Sbjct: 35 GHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR 94
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
++ N+ I A A+ DI R V A
Sbjct: 95 TVYDNVAIPLIIA-------GASGDDIRRR---------------------VSAALDKVG 126
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ ++ +FP ++LSGGE+QRV IAR ++ P ++L DE T LD
Sbjct: 127 LLDKAKNFP-----------IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175
Query: 1113 IQ---SALNRVCASRTTIIVAHRLSTI 1136
I NRV T ++ H + I
Sbjct: 176 ILRLFEEFNRVGV--TVLMATHDIGLI 200
Score = 31.8 bits (72), Expect = 1.6
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 577 LKLSGGEKQRVAIALNSLVDKPLVFRWD 604
++LSGGE+QRV IA ++V+KP V D
Sbjct: 136 IQLSGGEQQRVGIA-RAVVNKPAVLLAD 162
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 61.4 bits (149), Expect = 4e-10
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 40/203 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKST++ LL SGD+ + Q + +S A+ L N +
Sbjct: 41 VGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA----------KAELRNQKLG 90
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
F Q+ H + F A N + + A+I+
Sbjct: 91 FIYQF-------------------HHLLPDFT-------ALENVAMPLLIGKKKPAEINS 124
Query: 1056 RILSF--PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
R L G + + R +LSGGE+QRVAIAR L+ P++VL DE T LD + +I
Sbjct: 125 RALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184
Query: 1114 QSALNRVCASRTT--IIVAHRLS 1134
L + + T ++V H L
Sbjct: 185 FQLLGELNRLQGTAFLVVTHDLQ 207
Score = 33.6 bits (77), Expect = 0.47
Identities = 15/24 (62%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 575 RGLKLSGGEKQRVAIALNSLVDKP 598
R +LSGGE+QRVAIA +LV+ P
Sbjct: 142 RPSELSGGERQRVAIA-RALVNNP 164
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This
family represents the NikD subunit of a multisubunit
nickel import ABC transporter complex. Nickel, once
imported, may be used in urease and in certain classes of
hydrogenase and superoxide dismutase. NikD and NikE are
homologous [Transport and binding proteins, Cations and
iron carrying compounds].
Length = 230
Score = 60.8 bits (148), Expect = 4e-10
Identities = 60/236 (25%), Positives = 90/236 (38%), Gaps = 46/236 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE----SGDIFIDNQNIKTVSQASLRQ-AIGVVPQDTVLF 990
VG+SG+GKS + SG+I +D + + S+R I + Q+
Sbjct: 18 VGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRP---LLPLSIRGRHIATIMQNPRTA 74
Query: 991 NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
N + F + A E + S A I + E V
Sbjct: 75 FNPL-FTM------------GNHAI-----ETLRSLGKLSKQARALILEALEAV-----G 111
Query: 1051 ADIHERIL-SFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
E +L +P +LSGG QRV IA LL P ++ DE T+ LD
Sbjct: 112 LPDPEEVLKKYP-----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160
Query: 1110 ERNIQSALNRVCASRTT--IIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ + L + T +++ H L + ADE+ VM G IVERG +E+
Sbjct: 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 64.3 bits (156), Expect = 4e-10
Identities = 65/284 (22%), Positives = 123/284 (43%), Gaps = 49/284 (17%)
Query: 914 RDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973
R A+ L + E+Q+ +L G +GAGK+T + +L SG + + ++I+T +
Sbjct: 943 RPAVDRLNITFYENQITAFL---GHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NL 998
Query: 974 ASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQ 1033
++RQ++G+ PQ +LF++ + E IL
Sbjct: 999 DAVRQSLGMCPQHNILFHH------------------------LTVAEHILF-------- 1026
Query: 1034 YARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAP 1093
YA++ E + A + + G + E LSGG ++++++A +
Sbjct: 1027 YAQLKGRSWEEAQLEMEAMLED------TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080
Query: 1094 QIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI-IHADEILVMHAGEIVE 1152
++V+LDE TS +D + R+I L + + RT I+ H + + D I ++ G +
Sbjct: 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC 1140
Query: 1153 RGRHEELLERN----GVYASMWIQQNTKQSEPSSDESPPSSTAQ 1192
G L +N G Y ++ + QS+ E S T++
Sbjct: 1141 SG--TPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSK 1182
Score = 39.2 bits (91), Expect = 0.018
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 48/203 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ----DTVLFN 991
+G +GAGK+T ++L V SGD + ++I T + + + Q +G PQ D +L
Sbjct: 1971 LGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAIDDLLTG 2029
Query: 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+ YAR+ E E + I LS YA
Sbjct: 2030 REHLY--LYARLRGVPAEEIEKVANWSIQSLGLSL-------YA---------------- 2064
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
D G SGG K++++ A L+ P +VLLDE T+ +D + R
Sbjct: 2065 -------------DRLAG----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARR 2107
Query: 1112 NIQSALNRVC-ASRTTIIVAHRL 1133
+ + + + R ++ +H +
Sbjct: 2108 MLWNTIVSIIREGRAVVLTSHSM 2130
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to the
antibiotics daunorubicin and doxorubicin. In addition to
DrrA, the complex includes an integral membrane protein
called DrrB. DrrA belongs to the ABC family of
transporters and shares sequence and functional
similarities with a protein found in cancer cells called
P-glycoprotein. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 220
Score = 60.5 bits (147), Expect = 5e-10
Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 52/231 (22%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996
G +GAGK+T I++L SG + ++ +R+ IG+V QD
Sbjct: 33 GPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VREPREVRRRIGIVFQD---------- 81
Query: 997 NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056
S ++ + IH R+ P + RI +E+ + + +R
Sbjct: 82 --------LSVDDELTGWENLYIHARLYGVPGAERRE--RI----DELLDFVGLLEAADR 127
Query: 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA 1116
++ SGG ++R+ IAR+L+ P+++ LDE T LD +T ++
Sbjct: 128 LVK--------------TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY 173
Query: 1117 LNRVCASRTTIIVAHRLSTIIH--------ADEILVMHAGEIVERGRHEEL 1159
+ ++ I+ L+T H D + ++ G I+ G EEL
Sbjct: 174 IEKLKEEFGMTIL---LTT--HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the ABC
transporter ATP-binding cassette, but are found outside
the common ABC transporter operon structure that features
integral membrane permease proteins and substrate-binding
proteins encoded next to the ATP-binding cassette (ABC
domain) protein. The member protein ChvD from
Agrobacterium tumefaciens was identified as both a
candidate to interact with VirB8, based on yeast
two-hybrid analysis, and as an apparent regulator of
VirG. The general function of this protein family is
unknown.
Length = 552
Score = 63.0 bits (154), Expect = 6e-10
Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 34/184 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G +GAGKST++R++ +G +D + ++ + +G +PQ+ L ++
Sbjct: 37 LGLNGAGKSTLLRIM-------AG---VD-KEFNGEARPAPGIKVGYLPQEPQLDPTKTV 85
Query: 995 KFNIQYARINASEEEVKEAATSADIHERI---LSFPDGYDTQYARINASEEEVKEAATSA 1051
+ N+ EE V E + D I + PD A +E+ +AA +
Sbjct: 86 RENV--------EEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137
Query: 1052 DIHERI------LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
D+ ++ L P D V KLSGGE++RVA+ R LL P ++LLDE T+ L
Sbjct: 138 DLDRKLEIAMDALRCPPW-DADVT----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHL 192
Query: 1106 DTKT 1109
D ++
Sbjct: 193 DAES 196
Score = 48.4 bits (116), Expect = 2e-05
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 18/89 (20%)
Query: 1063 GYDTQ--VGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV 1120
G D Q VG+ LSGGE+ RV +A+TL ++LLDE T+ LD +T R ++ AL
Sbjct: 434 GSDQQKKVGQ----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF 489
Query: 1121 --CASRTTIIVAH------RLSTIIHADE 1141
CA ++++H R++T I A E
Sbjct: 490 AGCA----VVISHDRWFLDRIATHILAFE 514
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 60.2 bits (146), Expect = 8e-10
Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 50/205 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLR-QAIGVVPQDTVLFN 991
+G+SG+GKST++ +L D SG++ + Q + + + A LR + +G V Q +L
Sbjct: 42 IGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101
Query: 992 --NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
N+++ N++ + E S K
Sbjct: 102 TLNALE-NVELPALLRGESS----------------------------RQSRNGAKALLE 132
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ +R+ P +LSGGE+QRVA+AR P ++ DE T LD +T
Sbjct: 133 QLGLGKRLDHLP-----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181
Query: 1110 ERNIQS---ALNRVCASRTTIIVAH 1131
I +LNR + T I+V H
Sbjct: 182 GDKIADLLFSLNREHGT-TLILVTH 205
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from Azorhizobium
caulinodans [Cellular processes, Other, Transport and
binding proteins, Other].
Length = 303
Score = 61.1 bits (148), Expect = 8e-10
Identities = 64/234 (27%), Positives = 104/234 (44%), Gaps = 53/234 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G +GAGKSTI R+L + G I + + + + ++ + R AIGVVPQ F+N
Sbjct: 36 LGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLA-RVAIGVVPQ----FDNLDP 90
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
+F ++ E +L F +Y ++ E++ S
Sbjct: 91 EFTVR---------------------ENLLVF-----GRYFGMST--REIEAVIPSLLEF 122
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
R+ S D +V LSGG K+R+ +AR L+ PQ+++LDE T+ LD I
Sbjct: 123 ARLES---KADVRVAL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175
Query: 1115 SALNRVCASRTTIIV-------AHRLSTIIHADEILVMHAGEIVERGRHEELLE 1161
L + A TI++ A RL D + V+ +G + GR L++
Sbjct: 176 ERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLESGRKIAEGRPHALID 224
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 61.0 bits (148), Expect = 1e-09
Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 63/240 (26%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN--- 992
+G +GAGK+T +R+L ++G I + + + + ++ + RQ +GVVPQ F+N
Sbjct: 39 LGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA-RQRVGVVPQ----FDNLDP 93
Query: 993 --SIKFNIQ-YARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
+++ N+ + R ++A + ++A++ E K
Sbjct: 94 DFTVRENLLVFGRYFG--------LSAAAARALVPPL-----LEFAKL-----ENKA--- 132
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
D +VGE LSGG K+R+ +AR L+ P +++LDE T+ LD +
Sbjct: 133 ---------------DAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA 173
Query: 1110 ERNIQSALNRVCASRTTIIV-------AHRLSTIIHADEILVMHAGEIVERGRHEELLER 1162
+ L + A TI++ A RL D + V+ G + G L+E
Sbjct: 174 RHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAEGAPHALIES 228
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 60.2 bits (146), Expect = 1e-09
Identities = 56/228 (24%), Positives = 91/228 (39%), Gaps = 58/228 (25%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF----- 990
+G SG GK+T++ L+ F G I ++ + + + GVV Q+ L
Sbjct: 37 LGPSGCGKTTLLNLIAGFVTPSRGSIQLNG---RRIEGPGAER--GVVFQNEALLPWLNV 91
Query: 991 NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
+++ F +Q I E A +I ++L A + E
Sbjct: 92 IDNVAFGLQLRGI--------EKAQRREIAHQML----------ALVGLEGAE------- 126
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
H+ I +LSGG +QRV IAR L PQ++LLDE ALD T
Sbjct: 127 ---HKYIW---------------QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR 168
Query: 1111 RNIQSALNRVCASR--TTIIVAHRL-STIIHADEILVMHA--GEIVER 1153
+Q L + +++ H + + A ++V+ G +VER
Sbjct: 169 EQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related to
the subfamily A transporters involved in drug resistance,
nodulation, lipid transport, and bacteriocin and
lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 58.8 bits (143), Expect = 1e-09
Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 46/222 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
+G +GAGK+T IR++ +SG++ D + + + R IG +P++ L+ +
Sbjct: 32 LGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL----DIAARNRIGYLPEERGLYPKMKV 87
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
+ Y A + +K+ I E + + + R+ EE
Sbjct: 88 IDQLVYL---AQLKGLKKEEARRRIDEWLERL-ELSEYANKRV---EE------------ 128
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
LS G +Q+V ++ P++++LDE S LD ++
Sbjct: 129 --------------------LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 1115 SALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIVERG 1154
+ + + T+I H++ + D +L+++ G V G
Sbjct: 169 DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 60.1 bits (145), Expect = 1e-09
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 43/210 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 988
+G SG GKST ++ L R ++ES G + NQNI + V+ LR+ + +V
Sbjct: 39 IGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
LF S+ N+ Y VK + ++ V+ A
Sbjct: 99 LFPMSVYDNVAYG--------VKIVGWRPKLE-------------------IDDIVESAL 131
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
AD+ + I ++ + L LSGG++QR+ IAR L P+++L+DE LD
Sbjct: 132 KDADLWDEI-------KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184
Query: 1109 TERNIQSALN--RVCASRTTIIVAHRLSTI 1136
++S + R+ + T +IV+H L +
Sbjct: 185 ASMKVESLIQSLRLRSELTMVIVSHNLHQV 214
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 59.9 bits (145), Expect = 1e-09
Identities = 62/230 (26%), Positives = 92/230 (40%), Gaps = 50/230 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-------V 988
VG +G+GKST+ + L F + SG I I Q QA + + VPQ V
Sbjct: 39 VGVNGSGKSTLFKALMGFVRLASGKISILGQ---PTRQALQKNLVAYVPQSEEVDWSFPV 95
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
L + + +Y H L D Q V A
Sbjct: 96 LVEDVVMMG-RYG------------------HMGWLRRAKKRDRQI---------VTAAL 127
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
D+ E Q+GE LSGG+K+RV +AR + + Q++LLDE + +D K
Sbjct: 128 ARVDMVEF-------RHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVK 176
Query: 1109 TERNIQSALNRVCAS-RTTIIVAHRLSTIIHADEILVMHAGEIVERGRHE 1157
TE I S L + +T ++ H L ++ + VM G ++ G E
Sbjct: 177 TEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTE 226
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog (NtrA)
is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 59.1 bits (144), Expect = 2e-09
Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 45/230 (19%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTVLFNN-S 993
G +GAGK+T ++ +SG I +D Q+I + + + R IG +PQ+ +F +
Sbjct: 33 GPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRA-RLGIGYLPQEASIFRKLT 91
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
++ NI A E + + E++ + + + R +
Sbjct: 92 VEENIL-----AVLEIRGL--SKKEREEKLEELLEEFHITHLRKS--------------- 129
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ LSGGE++RV IAR L P+ +LLDE + +D ++I
Sbjct: 130 -----------------KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172
Query: 1114 QSALNRVCASRTTI-IVAHRLS-TIIHADEILVMHAGEIVERGRHEELLE 1161
Q + + + I H + T+ D +++ G+++ G EE+
Sbjct: 173 QKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 58.7 bits (142), Expect = 2e-09
Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 48/202 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 992
+G SG GKST++ + + +G+++++ Q + + A ++ IG++ QD +LF +
Sbjct: 34 MGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILFQDALLFPH 91
Query: 993 -SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
S+ N+ +A A + AR NA+ ++ +
Sbjct: 92 LSVGQNLLFA-------------LPATLKGN------------ARRNAANAALERSGLDG 126
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
H P LSGG++ RVA+ R LL P+ +LLDE S LD
Sbjct: 127 AFH----QDPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRD 171
Query: 1112 NI-QSALNRV-CASRTTIIVAH 1131
Q + V A T+ V H
Sbjct: 172 QFRQWVFSEVRAAGIPTVQVTH 193
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 59.0 bits (143), Expect = 2e-09
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 31/193 (16%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQ-NIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
G SG+GKST++R L+ Y + G I + ++ + A R+ + V +I
Sbjct: 44 GPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRT-------TIG 96
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+ Q+ R+ + + + E +L+ G + AR + + T ++ E
Sbjct: 97 YVSQFLRV------IPRVSALDVVAEPLLA--RGVPREVAR-----AKAADLLTRLNLPE 143
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
R+ S SGGE+QRV IAR + I+LLDE T++LD +
Sbjct: 144 RLWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE 193
Query: 1116 ALNRVCASRTTII 1128
+ A ++
Sbjct: 194 LIREAKARGAALV 206
Score = 29.3 bits (66), Expect = 9.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 580 SGGEKQRVAIALNSLVDKPL 599
SGGE+QRV IA +VD P+
Sbjct: 154 SGGEQQRVNIARGFIVDYPI 173
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding protein-dependent
ABC transporter complex that strictly co-occurs with
TIGR03769. TIGRFAMs model TIGR03769 describes a protein
domain that occurs singly or as one of up to three
repeats in proteins of a number of Actinobacteria,
including Propionibacterium acnes KPA171202. The
TIGR03769 domain occurs both in an adjacent gene for the
substrate-binding protein and in additional (often
nearby) proteins, often with LPXTG-like sortase
recognition signals. Homologous ATP-binding subunits
outside the scope of this family include manganese
transporter MntA in Synechocystis sp. PCC 6803 and
chelated iron transporter subunits. The function of this
transporter complex is unknown [Transport and binding
proteins, Unknown substrate].
Length = 223
Score = 58.7 bits (142), Expect = 2e-09
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 1065 DTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR 1124
D VGE LSGG++QRV +AR L P ++LLDE + LD T+ + + +
Sbjct: 108 DRPVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAG 163
Query: 1125 TTII-VAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTKQSEPSS 1182
T I+ H L+ + + +V+ G ++ G ++L + + W+ T SS
Sbjct: 164 TAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD-----PAPWMT--TFGVSDSS 215
Score = 30.6 bits (69), Expect = 4.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 985
+G +GAGK+T++R + G + + S + IG VPQ
Sbjct: 12 LGPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGKGWRHIGYVPQ 56
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein
OppF; Provisional.
Length = 331
Score = 60.1 bits (146), Expect = 2e-09
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 1133
SGG+ QR+ IAR L+ P++++ DE SALD + + + L ++ + I +AH L
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222
Query: 1134 STIIH-ADEILVMHAGEIVERGRHEEL 1159
+ + H +D +LVM+ G VE G ++E+
Sbjct: 223 AVVKHISDRVLVMYLGHAVELGTYDEV 249
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S
cluster assembly, ATPase component. Biosynthesis of
iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom from
cysteine and provides it to the cluster; SufE has no
associated function yet.
Length = 200
Score = 57.9 bits (141), Expect = 2e-09
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVAH-- 1131
SGGEK+R I + LL P + +LDE S LD R + +N+ ++ +I+ H
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 1132 RLSTIIHADEILVMHAGEIVERGRHE--ELLERNG 1164
RL I D + V++ G IV+ G E +E+ G
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKG 199
Score = 31.0 bits (71), Expect = 3.0
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 937 GQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIK 969
G +G+GKST+ + + Y+V G+I ++I
Sbjct: 33 GPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 59.7 bits (145), Expect = 3e-09
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH 1131
+LSGG+KQRVA+AR L PQI+LLDE ALD + + ++ L ++ T++ V H
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195
Query: 1132 RLSTIIH-ADEILVMHAGEIVERGRHEEL 1159
+ AD ++VM G I + G +++
Sbjct: 196 DQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 59.9 bits (145), Expect = 6e-09
Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 40/232 (17%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG+SG+GKST R L R + + G+I + Q I T+S L+ +++
Sbjct: 356 VGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQ---------------ALR 400
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYD-TQYARINASEEEVKEAATSADIH 1054
+IQ+ ++ S D + + G + R++ AA A +
Sbjct: 401 RDIQFI--------FQDPYASLDPRQTV-----GDSIMEPLRVHGLLPGKAAAARVAWLL 447
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
ER+ P+ + SGG++QR+ IAR L P++++ DEA SALD I
Sbjct: 448 ERVGLLPE----HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQII 503
Query: 1115 SALNRVCASR--TTIIVAHRLST---IIHADEILVMHAGEIVERGRHEELLE 1161
+ L + + ++H ++ I H + VM+ G+IVE G + E
Sbjct: 504 NLLLDLQRDFGIAYLFISHDMAVVERISH--RVAVMYLGQIVEIGPRRAVFE 553
Score = 58.3 bits (141), Expect = 2e-08
Identities = 62/237 (26%), Positives = 97/237 (40%), Gaps = 35/237 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFID-------NQNIKTVSQASLRQAIGVVPQDTV 988
VG+SG+GKS L R + G + D ++ + +S+ S Q V D
Sbjct: 48 VGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMA 107
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
+ F +N ++ A S +H+ + EE + EA
Sbjct: 108 MI-----FQEPMTSLNPVFTVGEQIAESIRLHQGA---------------SREEAMVEAK 147
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
D RI P+ T + +LSGG +QRV IA L P +++ DE T+ALD
Sbjct: 148 RMLD-QVRI---PEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 1109 TERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ I + + S I + H + + AD +LVM+ GE VE G E++
Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents domain II of the carbohydrate uptake
proteins that transport only monosaccharides (Monos). The
Carb_Monos family is involved in the uptake of
monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 56.3 bits (137), Expect = 7e-09
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134
LSGG +Q+V +AR L + P++++LDE T +D + I + + + +++ +S
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL---IS 161
Query: 1135 T----IIH-ADEILVMHAGEI 1150
+ ++ D ILVM+ G I
Sbjct: 162 SELDELLGLCDRILVMYEGRI 182
Score = 34.3 bits (80), Expect = 0.17
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQD 986
G G G++ + LF SG+I +D + + S + ++R I VP+D
Sbjct: 33 GLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPED 83
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 58.1 bits (140), Expect = 7e-09
Identities = 59/231 (25%), Positives = 97/231 (41%), Gaps = 43/231 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +G GKST++R L R G +++D ++I+ + + + IG++ Q+
Sbjct: 39 IGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQN--------- 89
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQ--YARINASEEEVKEAATSADI 1053
A T DI + L Y Q + R +EE A A
Sbjct: 90 -----------------ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT- 131
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN- 1112
G + LSGG++QR IA L + I+LLDE T+ LD + +
Sbjct: 132 ---------GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182
Query: 1113 --IQSALNRVCASRTTIIVAHRLSTII-HADEILVMHAGEIVERGRHEELL 1160
+ S LNR T V H L+ +A ++ + G+IV +G +E++
Sbjct: 183 LELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L
inhibitor. The ABC ATPase RNase L inhibitor (RLI) is a
key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved enzymes
between archaea and eukaryotes with a sequence identity
more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role in
archaeal and eukaryotic physiology.
Length = 177
Score = 56.4 bits (136), Expect = 7e-09
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVA 1130
+ LSGGE QRVAIA LL+ L DE ++ LD + N A+ R+ +T ++V
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 1131 HRLSTIIHADEILVMHAGE 1149
H L+ + + + + + GE
Sbjct: 130 HDLAVLDYLSDRIHVFEGE 148
Score = 29.8 bits (67), Expect = 4.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 577 LKLSGGEKQRVAIALNSLVDKPLVF 601
+ LSGGE QRVAIA L +
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYL 94
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 58.6 bits (142), Expect = 8e-09
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 16/126 (12%)
Query: 1039 ASEEEVK--EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIV 1096
A EE V+ +A + +R+ +P + SGG +QRV IA LL P+++
Sbjct: 135 AFEESVRMLDAVKMPEARKRMKMYPH-----------EFSGGMRQRVMIAMALLCRPKLL 183
Query: 1097 LLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHRLSTIIH-ADEILVMHAGEIVER 1153
+ DE T+ALD + I + LN + T I++ H L + D++LVM+AG +E
Sbjct: 184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243
Query: 1154 GRHEEL 1159
G ++
Sbjct: 244 GNARDV 249
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins, Other].
Length = 617
Score = 58.9 bits (143), Expect = 1e-08
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1065 DTQVGERGLK--LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 1122
+T++G G LSGGE++R+A A LL P ++ DE TS LD+ ++ L +
Sbjct: 155 NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ 214
Query: 1123 SRTTIIVA-HRLSTIIHA--DEILVMHAGEIVERGRHEELLE 1161
TII H+ S+ + D+I++M G + G ++ +
Sbjct: 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
Score = 31.2 bits (71), Expect = 3.6
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSGGE++R+A A L D PL+F
Sbjct: 167 LSGGERKRLAFASELLTDPPLLF 189
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 58.5 bits (142), Expect = 1e-08
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 47/225 (20%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDT----VLFN 991
G GAG++ ++++L+ SG + +D + T S Q L I + +D ++
Sbjct: 285 GLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344
Query: 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
S+K N+ L+ + + ++E ++A +
Sbjct: 345 MSVKENMS------------------------LTALRYFSRAGGSLKHADE--QQAVSDF 378
Query: 1052 DIHERILSF----PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
I F P + +G LSGG +Q+VAIAR L+ P++++LDE T +D
Sbjct: 379 -----IRLFNIKTP-SMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV 428
Query: 1108 KTERNIQSALNRVCASRTTII-VAHRLSTII-HADEILVMHAGEI 1150
++ I +N+ A +II V+ + ++ +D ILVMH G I
Sbjct: 429 GAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
Score = 47.7 bits (114), Expect = 3e-05
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 42/224 (18%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDTVLFNN-S 993
VG++GAGKST++++L Y ++G I + + ++S IG++ Q+ L +
Sbjct: 36 VGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
I NI R E V ++ RI+ K+ AD
Sbjct: 96 IAENIFLGR-----EFV---------------------NRFGRIDW-----KKMYAEADK 124
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL-DTKTERN 1112
L+ D VGE LS GE+Q V IA+ L +++++DE T AL DT+TE +
Sbjct: 125 LLARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE-S 179
Query: 1113 IQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGE-IVER 1153
+ + + + I+ ++HRL I D++ V G+ I ER
Sbjct: 180 LFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many species
have several closely-related members of this family,
probably with variable abilities to act additionally on
related quaternary amines [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 382
Score = 57.9 bits (140), Expect = 2e-08
Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 75/248 (30%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDN----QNIKTVSQASLR-----------QAIG 981
G SG+GKST++R + V G + + + ++ A+LR Q
Sbjct: 57 GLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFA 116
Query: 982 VVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASE 1041
++P TV N + F ++ + + E ++ D Q + ++
Sbjct: 117 LLPWRTVEEN--VAFGLEMQGM--PKAERRKRV----------------DEQLELVGLAQ 156
Query: 1042 EEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101
D + GE LSGG +QRV +AR I+L+DE
Sbjct: 157 WA---------------------DRKPGE----LSGGMQQRVGLARAFATEAPILLMDEP 191
Query: 1102 TSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIHADE-------ILVMHAGEIVE 1152
SALD +Q L + + +T + V+H L DE I +M G I++
Sbjct: 192 FSALDPLIRTQLQDELLELQSKLKKTIVFVSHDL------DEALKIGNRIAIMEGGRIIQ 245
Query: 1153 RGRHEELL 1160
G EE++
Sbjct: 246 HGTPEEIV 253
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 56.6 bits (137), Expect = 2e-08
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 1132
LSGG+KQRVA+AR L+ P ++LLDE ALD T +Q + + T ++V H
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 1133 LS-TIIHADEILVMHAGEI 1150
+S + AD +L++ G+I
Sbjct: 194 VSEAVAMADRVLLIEEGKI 212
Score = 30.8 bits (70), Expect = 4.1
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 936 VGQSGAGKSTIIRLL 950
VG+SG GKST++RLL
Sbjct: 44 VGRSGCGKSTLLRLL 58
Score = 29.6 bits (67), Expect = 8.9
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 579 LSGGEKQRVAIALNSLVDKP 598
LSGG+KQRVA+A +L+ +P
Sbjct: 134 LSGGQKQRVALA-RALIHRP 152
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette (ABC)
subunit of the known or predicted high-affinity xylose
ABC transporter for xylose import. These genes, which
closely resemble other sugar transport ABC transporter
genes, typically are encoded near xylose utilization
enzymes and regulatory proteins. Note that this form of
the transporter contains two copies of the ABC
transporter domain (pfam00005) [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 500
Score = 58.3 bits (141), Expect = 2e-08
Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 43/223 (19%)
Query: 937 GQSGAGKSTIIRLLFRFYDVE-SGDIFIDNQ--NIKTVSQASLRQAIGVVPQDT----VL 989
G GAG++ +++ LF Y + G++FI+ + +I+ +QA +R I +VP+D ++
Sbjct: 293 GLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQA-IRAGIAMVPEDRKRHGIV 351
Query: 990 FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
+ NI + + SF RI+A+ E +
Sbjct: 352 PILGVGKNITLSVLK--------------------SF-----CFKMRIDAAAELQIIGSA 386
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ + S P +G +LSGG +Q+ +A+ LL P++++LDE T +D
Sbjct: 387 IQRLKVKTAS-PF---LPIG----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
Query: 1110 ERNIQSALNRVCASRTTIIV-AHRLSTIIH-ADEILVMHAGEI 1150
+ I +N++ IIV + L+ ++ +D +LV+ G++
Sbjct: 439 KYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
Score = 43.3 bits (102), Expect = 6e-04
Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 50/226 (22%)
Query: 937 GQSGAGKSTIIRLLFRFY--DVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDTVLFNNS 993
G++GAGKST++++L Y G+I+ +K + + + R I ++ Q+ L
Sbjct: 34 GENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTL---- 89
Query: 994 IKFNIQYARINASEEEVKEAATSADI---HERILSFPDGYDTQYARINASEEEVKEAATS 1050
V E + + +I +E ++ P G A ++ ++E
Sbjct: 90 ----------------VPELSVAENIFLGNE--ITLPGGRMAYNAMYLRAKNLLRELQLD 131
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
AD R VG+ G GG++Q V IA+ L K ++++LDE +S+L TE
Sbjct: 132 ADNVTR----------PVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSL---TE 174
Query: 1111 RNIQSALNRV----CASRTTIIVAHRLSTIIH-ADEILVMHAGEIV 1151
+ + L+ + + ++H+L+ + D I V+ G+ V
Sbjct: 175 KETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component
[Coenzyme metabolism].
Length = 248
Score = 56.4 bits (136), Expect = 2e-08
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 1074 KLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVCAS-RT 1125
+LSGGE QRV +A +L+ A Q++LLDE ++LD + + L+ +C
Sbjct: 125 QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLA 184
Query: 1126 TIIVAHRLS-TIIHADEILVMHAGEIVERGRHEELL 1160
++ +H L+ T+ HA ++ G+++ GR EE+L
Sbjct: 185 IVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 56.1 bits (136), Expect = 2e-08
Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 55/237 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDV--ESGDIFIDNQNIKTVSQASL-RQAIGVVPQDTVLFNN 992
VG +GAGKST LL R + SG I Q ++ S A L R + Q T F
Sbjct: 28 VGPNGAGKST---LLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAM 84
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
+ QY L PD R A + E A
Sbjct: 85 PV---FQYLT---------------------LHQPDK-----TRTEAVASALNEVA---- 111
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLK-------APQIVLLDEATSAL 1105
L D V + LSGGE QRV +A +L+ A Q++LLDE ++L
Sbjct: 112 ---EALGLDDKLGRSVNQ----LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164
Query: 1106 DTKTERNIQSALNRVCASRTTIIVA-HRLS-TIIHADEILVMHAGEIVERGRHEELL 1160
D + + L+ +C ++++ H L+ T+ HAD + ++ G+++ GR +E+L
Sbjct: 165 DVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit;
Provisional.
Length = 356
Score = 57.2 bits (139), Expect = 3e-08
Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 57/237 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SI 994
VG SG GKST++R++ + SG+I+I + + + A + I +V Q+ L+ + S+
Sbjct: 36 VGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD--RDIAMVFQNYALYPHMSV 93
Query: 995 KFNIQYARINASEEEVKEAATS-ADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
+ N+ Y +K A+I ER V EAA
Sbjct: 94 RENMAYG--------LKIRGMPKAEIEER---------------------VAEAA----- 119
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE--- 1110
RIL D + +LSGG++QRVA+ R +++ P + L DE S LD K
Sbjct: 120 --RILELEPLLD----RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM 173
Query: 1111 ----RNIQSALNRVCASRTTIIVAH-RLSTIIHADEILVMHAGEIVERGRHEELLER 1162
+ + L T++ V H ++ + AD ++VM+ G + G E+ E+
Sbjct: 174 RLEIQRLHRRLK-----TTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 57.7 bits (140), Expect = 3e-08
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 1058 LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL 1117
L+ D + V E LSGGE QRVAIA L + + LLDE ++ LD + + +
Sbjct: 443 LNLEDLLERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI 498
Query: 1118 NRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGR 1155
R + T ++V H + I + +D ++V GE + G
Sbjct: 499 RRFIENNEKTALVVDHDIYMIDYVSDRLIVF-EGEPGKHGH 538
Score = 50.0 bits (120), Expect = 7e-06
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHR 1132
+LSGGE QRVAIA LL+ + DE +S LD + N + + + I+V H
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272
Query: 1133 LSTI 1136
L+ +
Sbjct: 273 LAVL 276
Score = 30.3 bits (69), Expect = 6.3
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 579 LSGGEKQRVAIAL 591
LSGGE QRVAIA
Sbjct: 456 LSGGELQRVAIAA 468
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 55.9 bits (135), Expect = 3e-08
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 56/243 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ-----NIKTVSQAS----LRQAIGVVPQD 986
VG+SG+GK+T+++ + ++G + + ++ T+S+A LR G V Q
Sbjct: 38 VGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ- 96
Query: 987 TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
N + + + +I ER+++ + Y I A
Sbjct: 97 -----------------NPRDGLRMQVSAGGNIGERLMAIGARH---YGNIRA------- 129
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
+ D E + D D + SGG +QR+ IAR L+ P++V +DE T LD
Sbjct: 130 --EAQDWLEEVEIDLDRID----DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 183
Query: 1107 TKTE-------RNIQSALNRVCASRTTIIVAHRLSTI-IHADEILVMHAGEIVERGRHEE 1158
+ R + L +IV H L+ + AD ++VM G++VE G +
Sbjct: 184 VSVQARLLDLLRGLVRELG-----LAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDR 238
Query: 1159 LLE 1161
+L+
Sbjct: 239 VLD 241
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional.
Length = 255
Score = 55.1 bits (133), Expect = 5e-08
Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 52/228 (22%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQASLRQAIGVVPQDTVLF 990
L+ +G SG GK+T++ L+ F + G I +D + ++ + + Q G++P V
Sbjct: 30 LVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQD 89
Query: 991 NNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATS 1050
N + F +Q A + + R+ + + +K+
Sbjct: 90 N--VAFGLQLAGVEKMQ----------------------------RLEIAHQMLKKVGLE 119
Query: 1051 ADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE 1110
I +LSGG++QRV IAR L PQ++LLDE ALD T
Sbjct: 120 GAEKRYIW---------------QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTR 164
Query: 1111 RNIQSALNRVCA--SRTTIIVAHRL-STIIHADEILVMH--AGEIVER 1153
+Q+ L ++ + +++ H + + A E++++ G +VER
Sbjct: 165 EQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 288
Score = 55.5 bits (133), Expect = 5e-08
Identities = 52/249 (20%), Positives = 108/249 (43%), Gaps = 50/249 (20%)
Query: 923 IALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS----LRQ 978
I LE + Y +G +G+GKST+++ L G + + + + + S+ +R+
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 979 AIGVVPQ--DTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQY 1034
+GVV Q ++ LF ++ ++ + N +E+ ++ A
Sbjct: 85 KVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAA------------------- 125
Query: 1035 ARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQ 1094
E+++ + + E+ +LSGG+ +RVAIA L P+
Sbjct: 126 -------EKLEMVGLADEFWEK--------------SPFELSGGQMRRVAIAGILAMEPE 164
Query: 1095 IVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTII-HADEILVMHAGEIVE 1152
+++LDE T+ LD K + + S +T ++V H + + +AD + ++ G I+
Sbjct: 165 VLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS 224
Query: 1153 RGRHEELLE 1161
G ++ +
Sbjct: 225 CGTPSDVFQ 233
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 54.9 bits (133), Expect = 6e-08
Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 53/235 (22%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTVLFNN-S 993
G +GAGK+T ++ +SG I +D+++I + + + R IG +PQ+ +F +
Sbjct: 37 GPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA-RLGIGYLPQEASIFRKLT 95
Query: 994 IKFNI----QYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
++ NI + + + E KE ++A EE
Sbjct: 96 VEDNIMAVLEIREKDLKKAERKE-----------------------ELDALLEEF----- 127
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
I D + LSGGE++RV IAR L P+ +LLDE + +D
Sbjct: 128 ------HITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174
Query: 1110 ERNIQSALNRVCASRT--TIIVAHRL-STIIHADEILVMHAGEIVERGRHEELLE 1161
+IQ + + R +I H + T+ D ++ G+++ G EE++
Sbjct: 175 VIDIQ-RIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type Na+
transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB possess
six putative membrane spanning regions at its C-terminus.
In B. subtilis, NatAB is inducible by agents such as
ethanol and protonophores, which lower the proton-motive
force across the membrane. The closest sequence
similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 54.6 bits (132), Expect = 6e-08
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 47/225 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +GAGK+T +++L SG + + +R A G+VP + K
Sbjct: 53 IGPNGAGKTTTLKIL-------SG--------LLQPTSGEVRVA-GLVP-----WKRRKK 91
Query: 996 FNIQYARINASEEEVK---EAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
F + + + ++ S + I YD AR +E+ E D
Sbjct: 92 FLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI------YDLPPARFKKRLDELSEL---LD 142
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ E +L DT V +LS G++ R IA LL P+I+ LDE T LD + N
Sbjct: 143 L-EELL------DTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191
Query: 1113 IQSALNRVCASR-TTIIV-AHRLSTIIH-ADEILVMHAGEIVERG 1154
I++ L R TT+++ +H + I A +LV+ G ++ G
Sbjct: 192 IRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the membrane
(PMID:11943156). The SUF system also includes a cysteine
desulfurase (SufS, enhanced by SufE) and a probable
iron-sulfur cluster assembly scaffold protein, SufA
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 54.6 bits (132), Expect = 6e-08
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 1063 GYDTQVGERGLK--LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV 1120
G D + R + SGGEK+R I + L P++ +LDE S LD + + +NR+
Sbjct: 131 GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190
Query: 1121 CA-SRTTIIVAH--RLSTIIHADEILVMHAGEIVERGRHE--ELLERNG 1164
R+ +I+ H RL I D + V+ G IV+ G E + LE G
Sbjct: 191 REPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKELEEKG 239
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 54.9 bits (133), Expect = 7e-08
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-------RNIQSALNRVCASRTTII 1128
SGG +QR+ IAR L+ P++V +DE T LD + R + L +I
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG-----LAVVI 207
Query: 1129 VAHRLSTI-IHADEILVMHAGEIVERG 1154
V H L+ + A +LVM G +VE G
Sbjct: 208 VTHDLAVARLLAHRLLVMKQGRVVESG 234
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 55.1 bits (133), Expect = 8e-08
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAH 1131
+LSGG QRV IA + P++++ DE T+ALD + I L + +++ H
Sbjct: 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH 212
Query: 1132 RLSTIIH-ADEILVMHAGEIVERGRHEEL 1159
L+ + A +I+VM+AG++VE G+ ++
Sbjct: 213 DLALVAEAAHKIIVMYAGQVVETGKAHDI 241
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 53.9 bits (130), Expect = 8e-08
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 50/235 (21%)
Query: 923 IALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGV 982
+ + V+ LL G +GAGKST+++++ SG+I D ++ L + IG
Sbjct: 21 LTVPKNSVYGLL--GPNGAGKSTLLKMITGILRPTSGEIIFDGHPW---TRKDLHK-IGS 74
Query: 983 VPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEE 1042
+ + L+ N + E +K +H +L PD +RI +
Sbjct: 75 LIESPPLYENL-----------TARENLK-------VHTTLLGLPD------SRI----D 106
Query: 1043 EVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEAT 1102
EV + ++ + + S G KQR+ IA LL P++++LDE T
Sbjct: 107 EVLNIVDLTNTGKK--------------KAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152
Query: 1103 SALDTKTERNIQSALNRVCASRTTIIV-AHRLSTIIH-ADEILVMHAGEIVERGR 1155
+ LD + ++ + T+I+ +H LS + AD I ++ G + +G+
Sbjct: 153 NGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGK 207
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 55.9 bits (136), Expect = 1e-07
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 36/182 (19%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ-NIKTVSQASLRQAIGVVPQDTVLFNN-S 993
+G +GAGKST++R++ +G +D + + ++ +G +PQ+ L +
Sbjct: 39 LGLNGAGKSTLLRIM-------AG---VDKEFEGEARPAPGIK--VGYLPQEPQLDPEKT 86
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERI---LSFPDGYDTQYARINASEEEVKEAATS 1050
++ N+ EE V E + D I + PD A +E+ +AA +
Sbjct: 87 VRENV--------EEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138
Query: 1051 ADIHERI------LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
D+ ++ L P D +V KLSGGE++RVA+ R LL+ P ++LLDE T+
Sbjct: 139 WDLDSQLEIAMDALRCPPW-DAKVT----KLSGGERRRVALCRLLLEKPDMLLLDEPTNH 193
Query: 1105 LD 1106
LD
Sbjct: 194 LD 195
Score = 44.0 bits (105), Expect = 5e-04
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 18/89 (20%)
Query: 1063 GYDTQ--VGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV 1120
G D Q VG LSGGE+ R+ +A+TL + ++LLDE T+ LD +T R ++ AL
Sbjct: 436 GGDQQKKVGV----LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF 491
Query: 1121 --CASRTTIIVAH------RLSTIIHADE 1141
CA ++++H R++T I A E
Sbjct: 492 PGCA----VVISHDRWFLDRIATHILAFE 516
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 274
Score = 54.2 bits (130), Expect = 1e-07
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 1133
LSGG+ Q VA+A L P+ ++ DE TS LD + + + ++ TI+ + H L
Sbjct: 137 LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL 196
Query: 1134 STIIHADEILVMHAGEIVERGRHEELL 1160
+ AD I+VM G+IV G E +L
Sbjct: 197 EELHDADRIIVMDRGKIVLEGEPENVL 223
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding
protein; Provisional.
Length = 330
Score = 54.4 bits (131), Expect = 2e-07
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII--VAH 1131
+L+ GE Q+V IA L P++++ DE T+A++ T+ I L R+ + T I ++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 1132 RLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
L + AD+I V++ G+ VE +EL+
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELV 247
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter
ATP-binding subunit GldA. Members of this protein family
are exclusive to the Bacteroidetes phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC
transporter ATP-binding protein (pfam00005) linked to a
type of rapid surface gliding motility found in certain
Bacteroidetes, such as Flavobacterium johnsoniae and
Cytophaga hutchinsonii. Knockouts of GldA abolish the
gliding phenotype. Gliding motility appears closely
linked to chitin utilization in the model species
Flavobacterium johnsoniae. Bacteroidetes with members of
this protein family appear to have all of the genes
associated with gliding motility.
Length = 301
Score = 54.0 bits (130), Expect = 2e-07
Identities = 56/262 (21%), Positives = 113/262 (43%), Gaps = 55/262 (20%)
Query: 909 KGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 968
K GT++A+ + A + ++V +L G +GAGKST ++++ + +SG + + +++
Sbjct: 10 KLYGTQNALDEVSFEAQKGRIVGFL---GPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66
Query: 969 KTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPD 1028
+ +++ IG +P+ L+ D
Sbjct: 67 LQNPKE-VQRNIGYLPEHNPLY------------------------------------LD 89
Query: 1029 GYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLK------LSGGEKQR 1082
Y +Y + A +K + E I VG R + LS G +QR
Sbjct: 90 MYVREYLQFIAGIYGMKGQLLKQRVEEMI--------ELVGLRPEQHKKIGQLSKGYRQR 141
Query: 1083 VAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI-IHADE 1141
V +A+ L+ P++++LDE T+ LD I++ + + +T I+ H + + D
Sbjct: 142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR 201
Query: 1142 ILVMHAGEIVERGRHEELLERN 1163
+++++ G+IV + +EL N
Sbjct: 202 VIIINKGKIVADKKLDELSAAN 223
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 54.5 bits (131), Expect = 2e-07
Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 55/254 (21%)
Query: 905 FGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFID 964
FG R+ R LR + LE + + VGQSGAGK+T++R++ + +
Sbjct: 387 FGVRQRVIERYV---LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRP 443
Query: 965 NQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERIL 1024
+ V + ++ I E E I E +
Sbjct: 444 DSGKVEVPKNTVSALI------------------------PGEYE--PEFGEVTILEHLR 477
Query: 1025 SFPDGYDTQYARINASEEEVKEA-ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRV 1083
S +NA+ E + A + A ++ R S +LS G+K+R
Sbjct: 478 SKT-------GDLNAAVEILNRAGLSDAVLYRRKFS--------------ELSTGQKERA 516
Query: 1084 AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT-TIIVAHRLSTIIHA--- 1139
+A+ L + P ++L+DE + LD T + ++ + T+IV + +A
Sbjct: 517 KLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRP 576
Query: 1140 DEILVMHAGEIVER 1153
D ++++ G++
Sbjct: 577 DTLILVGYGKVPVN 590
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 53.6 bits (129), Expect = 3e-07
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 40/243 (16%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDI--FIDNQNIKTVSQASLRQAIGVVPQDT----VL 989
+GQ+G+GK+T I L ++G I ++ K ++ + +V Q T +
Sbjct: 39 IGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIK 98
Query: 990 FNNSIKFNI----QYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
I+ + Q+A E ++ E DI +S S+EE K
Sbjct: 99 KIKEIRRRVGVVFQFA-----EYQLFEQTIEKDIIFGPVSM-----------GVSKEEAK 142
Query: 1046 EAATSADIHERILSFPDGYDTQVGERG-LKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
+ A A E + G D +R +LSGG+K+RVA+A L P ++ DE T+
Sbjct: 143 KRA--AKYIELV-----GLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAG 195
Query: 1105 LD---TKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
LD K I LN+ +T I+V H L ++ + G+I++ G ++L
Sbjct: 196 LDPQGVKEILEIFDNLNK--QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253
Query: 1161 ERN 1163
N
Sbjct: 254 SDN 256
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit;
Provisional.
Length = 265
Score = 52.5 bits (126), Expect = 4e-07
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 1132
LSGGE+QR IA + + + +LLDE TSALD + ++ + ++R+ R T I V H
Sbjct: 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207
Query: 1133 LSTII-HADEILVMHAGEIVERGRHEELLE 1161
++ + D ++ + GE++ +G EL+
Sbjct: 208 INMAARYCDYLVALRGGEMIAQGTPAELMR 237
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 52.2 bits (125), Expect = 4e-07
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 66/233 (28%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDTVLFNNSI 994
+G +GAGK+T ++ ++G+I ID+++I + A R+ IG +PQ+ +F
Sbjct: 35 LGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
++ A + ++++ ++ +R + + ++ R +
Sbjct: 95 VYDNLMAVL-----QIRDDLSAEQREDRANELMEEFHIEHLRDSM--------------- 134
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDE------ATSALDTK 1108
G LSGGE++RV IAR L P+ +LLDE S +D K
Sbjct: 135 -----------------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIK 177
Query: 1109 ---------------TERNIQSALNRVCASRTTII-----VAHRLSTIIHADE 1141
T+ N++ L VC R I+ +AH T I DE
Sbjct: 178 RIIEHLRDSGLGVLITDHNVRETLA-VC-ERAYIVSQGHLIAHGTPTEILQDE 228
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 52.0 bits (125), Expect = 5e-07
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAH--R 1132
SGGEK+R I + L ++ +LDE S LD + I +N++ S +II + H R
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212
Query: 1133 LSTIIHADEILVMHAGEIVERGRHE--ELLERNG 1164
L I D + VM G+I++ G E + LE+ G
Sbjct: 213 LLDYIKPDYVHVMQNGKIIKTGDAELAKELEKKG 246
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor
3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release of
the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP nucleotide
binding sequence (NBS) motifs. NBSI is sufficient for the
intrinsic ATPase activity. NBSII is essential for the
ribosome-stimulated functions.
Length = 144
Score = 49.8 bits (120), Expect = 6e-07
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 7/78 (8%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-R- 1132
LSGGEK R+A+A+ LL+ P ++LLDE T+ LD ++ ++ AL T I+V+H R
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRY 128
Query: 1133 -LSTIIHADEILVMHAGE 1149
L + A +I+ + G+
Sbjct: 129 FLDQV--ATKIIELEDGK 144
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 53.2 bits (128), Expect = 7e-07
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134
LSGGEKQR+A+AR PQ +LDE TSA+ E + T V+HR S
Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKS 640
Query: 1135 TIIHADEILVM 1145
+ + +L M
Sbjct: 641 LWKYHEYLLYM 651
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 52.2 bits (125), Expect = 9e-07
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII--VAH 1131
+L+ GE Q+V IA L P++++ DE T++++ T+ I L+R+ + T I ++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
Query: 1132 RLSTIIH-ADEILVMHAGEIVERGRHEELLE 1161
L I AD+I V++ G+ VE EEL+
Sbjct: 218 DLQMISQWADKINVLYCGQTVESAPSEELVT 248
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein
LsrA; Provisional.
Length = 510
Score = 52.7 bits (127), Expect = 9e-07
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 1133
LSGG +Q+V IA+ L +PQ++++DE T +D +I + + A ++ ++ L
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL 463
Query: 1134 STIIH-ADEILVMHAGEI 1150
I AD +LVMH GEI
Sbjct: 464 EEIEQMADRVLVMHQGEI 481
Score = 44.7 bits (106), Expect = 3e-04
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 51/229 (22%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ-AIGVVPQDTVLFNN-SI 994
G +GAGKST+++++ +SG + I ++ A Q I +VPQ+ +LF N S+
Sbjct: 44 GGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV 103
Query: 995 KFNIQY--ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
K NI + + AS +++K+ + L D +A S +
Sbjct: 104 KENILFGLPKRQASMQKMKQLLAALGCQ---LD-LDS-----------------SAGSLE 142
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ +R Q V I R L++ +I++LDE T++L
Sbjct: 143 VADR------------------------QIVEILRGLMRDSRILILDEPTASLTPAETER 178
Query: 1113 IQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIVERGRHEEL 1159
+ S + + A I+ ++H+L I AD I VM G I G+ +L
Sbjct: 179 LFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 52.5 bits (127), Expect = 1e-06
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 1000 YARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE--AATSADIHE-- 1055
+A++ A + E ++ +I Y QY + + + V++ + + D+
Sbjct: 381 FAKLLAGVLKPDEGEVDPEL--KI-----SYKPQYIKPD-YDGTVEDLLRSITDDLGSSY 432
Query: 1056 ------RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ L D V + LSGGE QRVAIA L + + LLDE ++ LD +
Sbjct: 433 YKSEIIKPLQLERLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488
Query: 1110 ERNIQSALNRVCASR--TTIIVAHRLSTI-IHADEILV 1144
+ A+ R+ R T ++V H + I +D ++V
Sbjct: 489 RLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV 526
Score = 51.7 bits (125), Expect = 2e-06
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER-NIQSALNRVCASRTTIIVAHR 1132
+LSGGE QRVAIA LL+ DE TS LD + +R N+ + + + ++V H
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR-QRLNVARLIRELAEGKYVLVVEHD 270
Query: 1133 L 1133
L
Sbjct: 271 L 271
Score = 31.7 bits (73), Expect = 2.8
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 579 LSGGEKQRVAIA 590
LSGGE QRVAIA
Sbjct: 454 LSGGELQRVAIA 465
Score = 31.3 bits (72), Expect = 3.9
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 578 KLSGGEKQRVAIA 590
+LSGGE QRVAIA
Sbjct: 212 ELSGGELQRVAIA 224
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 50.9 bits (122), Expect = 1e-06
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-----CASRTTII 1128
KLSGGE QRV +AR LL PQ+++LDE T +D + + ++++ CA ++
Sbjct: 120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA---VLM 176
Query: 1129 VAHRLSTII-HADEIL 1143
V+H L ++ DE+L
Sbjct: 177 VSHDLHLVMAKTDEVL 192
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 51.9 bits (125), Expect = 1e-06
Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 61/229 (26%)
Query: 940 GAGKSTIIRLLFRFYD-VESGDIFIDNQ--NIKTVSQASLRQAIGVVPQD-------TVL 989
GAG++ +++ LF Y G+IFID + I+ QA + Q I +VP+D V+
Sbjct: 298 GAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQA-IAQGIAMVPEDRKRDGIVPVM 356
Query: 990 FNNSIKFNI------QYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEE 1043
+ NI ++ + + +AA I E I R+ +
Sbjct: 357 ---GVGKNITLAALDRFTGGSR----IDDAAELKTILESI-----------QRL-----K 393
Query: 1044 VKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103
VK +A I LSGG +Q+ +A+ LL P+I++LDE T
Sbjct: 394 VK----TASPELAIAR---------------LSGGNQQKAVLAKCLLLNPKILILDEPTR 434
Query: 1104 ALDTKTERNIQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEI 1150
+D + I +N++ II ++ L ++ +D +LVMH G++
Sbjct: 435 GIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
Score = 48.0 bits (115), Expect = 2e-05
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 68/233 (29%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVES--GDIFIDNQ-----NIKTVSQAS---LRQAIGVVPQ 985
G++GAGKST++++L Y + G+I + + NI+ +A + Q + +V +
Sbjct: 37 CGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96
Query: 986 DTVLFN----NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASE 1041
+VL N N I ++ YD Y R
Sbjct: 97 LSVLENIFLGNEI---TPGGIMD-------------------------YDAMYLRAQKLL 128
Query: 1042 EEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101
++K DI+ T VG L G++Q V IA+ L K ++++LDE
Sbjct: 129 AQLK-----LDINP---------ATPVGN----LGLGQQQLVEIAKALNKQARLLILDEP 170
Query: 1102 TSALDTKTERNIQSALNRVCASR----TTIIVAHRLSTIIH-ADEILVMHAGE 1149
T++L TE L+ + + I ++H+L+ + +D I V+ G
Sbjct: 171 TASL---TESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is a
well-described phenomenon occurring in fungi and shares
several similarities with processes in bacteria and
higher eukaryotes. This PDR subfamily represents domain I
of its (ABC-IM)2 organization. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds including sugars,
ions, peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 202
Score = 50.0 bits (120), Expect = 2e-06
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 1071 RGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTII 1128
RG+ SGGE++RV+IA L+ ++ D +T LD+ T I + R A +TT
Sbjct: 117 RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI-RTMADVLKTTTF 173
Query: 1129 VA-HRLSTIIHA--DEILVMHAGEIV 1151
V+ ++ S I+ D++LV++ G +
Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGRQI 199
Score = 29.5 bits (67), Expect = 8.1
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 575 RGLKLSGGEKQRVAIALNSLVDKPLVFRWD 604
RG+ SGGE++RV+IA +LV + V WD
Sbjct: 117 RGI--SGGERKRVSIA-EALVSRASVLCWD 143
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal biogenesis,
formation of translation preinitiation complexes, and
assembly of HIV capsids. RLI's are not transport proteins
and thus cluster with a group of soluble proteins that
lack the transmembrane components commonly found in other
members of the family. Structurally, RLI's have an
N-terminal Fe-S domain and two nucleotide-binding domains
which are arranged to form two composite active sites in
their interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology.
Length = 246
Score = 50.5 bits (121), Expect = 2e-06
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 1064 YDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-- 1121
D +V E LSGGE QRVAIA L K I LLDE ++ LD + + R
Sbjct: 109 LDREVPE----LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164
Query: 1122 ASRTTIIVAHRLSTIIH-ADEILV 1144
+T +V H + I + AD ++V
Sbjct: 165 NEKTAFVVEHDIIMIDYLADRLIV 188
Score = 30.8 bits (70), Expect = 3.7
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 579 LSGGEKQRVAIAL 591
LSGGE QRVAIA
Sbjct: 116 LSGGELQRVAIAA 128
Score = 29.7 bits (67), Expect = 9.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 968
+G +G GK+T I++L + GDI I+ +
Sbjct: 31 LGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 50.4 bits (121), Expect = 2e-06
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 1133
LSGG++QR +A L + +VLLDE T+ LD + + + + +T + V H L
Sbjct: 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198
Query: 1134 STII-HADEILVMHAGEIVERGRHEELL 1160
+ + D ++V+ G ++ +G EE++
Sbjct: 199 NQASRYCDHLVVLANGHVMAQGTPEEVM 226
Score = 36.5 bits (85), Expect = 0.050
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 985
+G +G GKST+++ R +SG +F+ ++ I +S L + + ++PQ
Sbjct: 34 IGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQ 83
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair
protein UvrA. Nucleotide excision repair in eubacteria
is a process that repairs DNA damage by the removal of a
12-13-mer oligonucleotide containing the lesion.
Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is structurally
related to that of helicases.
Length = 176
Score = 48.5 bits (116), Expect = 3e-06
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVAH 1131
LSGGE QRV +A L P + +LDE ++ L + + + + T I++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 1132 RLSTIIHADEILVM------HAGEIVERG 1154
L + AD I+ G++V G
Sbjct: 148 NLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 49.7 bits (119), Expect = 3e-06
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT--TIIVAHR 1132
+SGG QR+ IA LL ++ DE T+ LD + I L + R ++V H
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200
Query: 1133 LSTIIH-ADEILVMHAGEIVERGRHEELLER 1162
+ + AD++ VM G IVE+G E L
Sbjct: 201 MGVVARLADDVAVMSHGRIVEQGDVETLFNA 231
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 51.0 bits (122), Expect = 4e-06
Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 53/253 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++G GK+T R+ + + D N I V Q VV DT +
Sbjct: 209 VGRNGTGKTT----FLRYMAMHAIDGIPKNCQILHVEQE-------VVGDDTTALQCVLN 257
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+I+ R EEE + A + L F ++ + +I++
Sbjct: 258 TDIE--RTQLLEEEAQLVAQQRE-----LEFETETGKGKGANKDGVDKDAVSQRLEEIYK 310
Query: 1056 RILSFPDGY-----------------DTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLL 1098
R L D Y + QV + SGG + R+A+AR L P ++LL
Sbjct: 311 R-LELIDAYTAEARAASILAGLSFTPEMQV-KATKTFSGGWRMRIALARALFIEPDLLLL 368
Query: 1099 DEATSALDTKTERNIQSALNRVCASRTTIIVAHR---LSTIIHADEILVMHAGEIV---- 1151
DE T+ LD +++ L + +T I+V+H L+T++ +IL +H ++V
Sbjct: 369 DEPTNHLDLHAVLWLETYL--LKWPKTFIVVSHAREFLNTVV--TDILHLHGQKLVTYKG 424
Query: 1152 -----ERGRHEEL 1159
ER R E+L
Sbjct: 425 DYDTFERTREEQL 437
Score = 43.3 bits (102), Expect = 8e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
LSGG+K RVA A+ K P I+LLDE ++ LD
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 50.0 bits (120), Expect = 8e-06
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNR 1119
GY ++G+ LSGGE QR+ +A+ L K + +LDE T+ L + + L R
Sbjct: 819 GY-IRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQR 877
Query: 1120 -VCASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGRHEEL 1159
V T +++ H L I AD I+ + G +V G EE+
Sbjct: 878 LVDKGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEV 924
Score = 45.8 bits (109), Expect = 1e-04
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTK-TERNIQSALNRVCASRTTIIVAH 1131
LSGGE QR+ +A + VL LDE + L + R I + T I+V H
Sbjct: 489 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEH 548
Query: 1132 RLSTIIHADEILVM------HAGEIVERGRHEELLE 1161
TI AD ++ + H GE+V G EE+L
Sbjct: 549 DEDTIRAADYVIDIGPGAGEHGGEVVASGTPEEILA 584
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 48.9 bits (117), Expect = 8e-06
Identities = 46/238 (19%), Positives = 89/238 (37%), Gaps = 58/238 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +GAGK+T R++ + G+I + + ++ IG +P++ L
Sbjct: 34 LGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGYLPEERGL------ 83
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINAS----EEEVKEAATSA 1051
Y ++ E+++K A G + E+ T
Sbjct: 84 ----YPKMTV-EDQLKYLAELK-----------GMPKAEIQKKLQAWLERLEIVGKKTK- 126
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+I LS G +Q++ ++ P++++LDE S LD
Sbjct: 127 ----KIKE---------------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE 167
Query: 1112 NIQSALNRVCASRTTIIVA-HRLSTIIHA----DEILVMHAGEIVERGRHEELLERNG 1164
++ A+ + TII + HR+ H D +L++ G+ V G E++ G
Sbjct: 168 LLKDAIFELKEEGATIIFSSHRME---HVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 49.9 bits (120), Expect = 9e-06
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 1075 LSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVA 1130
LSGGE QRV +A+ L K + +LDE T+ L + + L+R V T I++
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 1131 HRLSTIIHADEILVM------HAGEIVERGRHEELLE 1161
H L I AD I+ + GEIV G EE+ +
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919
Score = 46.4 bits (111), Expect = 9e-05
Identities = 38/102 (37%), Positives = 47/102 (46%), Gaps = 21/102 (20%)
Query: 1075 LSGGEKQRVAIARTLLKAPQI------VL--LDEATSALDTK-TERNIQSALNRVCASRT 1125
LSGGE QR+ +A QI VL LDE + L + ER I++ T
Sbjct: 482 LSGGEAQRIRLAT------QIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNT 535
Query: 1126 TIIVAHRLSTIIHADEILVM------HAGEIVERGRHEELLE 1161
I+V H TI AD I+ + H GEIV G EELL
Sbjct: 536 VIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 47.6 bits (114), Expect = 9e-06
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 992
L+ G +G+GK+T++RL+ +G I +D +I A +G ++ +
Sbjct: 31 LVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG--HRNAM---- 84
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARI-NASEEEVKEAATSA 1051
K A T A+ L F +A E ++ A +
Sbjct: 85 ------------------KPALTVAEN----LEF-------WAAFLGGEELDIAAALEAV 115
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ + P GY LS G+K+RVA+AR L+ I +LDE T+ALD
Sbjct: 116 GLA-PLAHLPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA 164
Query: 1112 NIQSALNRVCASRTTIIVA 1130
+ A +I A
Sbjct: 165 LFAELIRAHLAQGGIVIAA 183
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides excreted
by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 47.9 bits (115), Expect = 1e-05
Identities = 57/222 (25%), Positives = 89/222 (40%), Gaps = 54/222 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G++GAGKST++RLL Y +SG + + + VS + L G P+ T N I
Sbjct: 54 IGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR----VS-SLLGLGGGFNPELTGREN--IY 106
Query: 996 FNIQYARI-NASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
N R+ S +E+ E + I+ F +++
Sbjct: 107 LN---GRLLGLSRKEIDE------KIDEIIEF------------------------SELG 133
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
+ I D V S G K R+A A P I+L+DE + D + Q
Sbjct: 134 DFI-------DLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ 182
Query: 1115 SALNRVCA-SRTTIIVAHRLSTII-HADEILVMHAGEIVERG 1154
L + +T I+V+H S+I D LV+ G+I G
Sbjct: 183 RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is a
well-described phenomenon occurring in fungi and shares
several similarities with processes in bacteria and
higher eukaryotes. This PDR subfamily represents domain I
of its (ABC-IM)2 organization. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds including sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 192
Score = 47.2 bits (113), Expect = 1e-05
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1071 RGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 1130
RGL + +++R+ I L P I+ LDE TS LD++ NI L ++ S I+
Sbjct: 107 RGLSVE--QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164
Query: 1131 -HRLSTII--HADEILVMHAG 1148
H+ S I D +L++ G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRG 185
Score = 31.1 bits (71), Expect = 2.4
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 936 VGQSGAGKSTIIRLLFRFYD--VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 993
+G+SGAGK+T++ +L V +G+I I+ + + + +++ G V Q V N
Sbjct: 39 MGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVHSPNL 94
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 47.6 bits (113), Expect = 1e-05
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 44/173 (25%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFNNSI 994
+G +GAGK+T++ L SG I D ++I A +R+A+ +VP+ +F
Sbjct: 37 IGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVF---- 92
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQY-ARINASEEEVKEAATSADI 1053
+R+ EE + A+ Q+ RI
Sbjct: 93 ------SRMTV-EENLAMGGFFAE------------RDQFQERI---------------- 117
Query: 1054 HERILS-FPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
+ + FP ++ ++ +R +SGGE+Q +AI R L+ P+++LLDE + L
Sbjct: 118 -KWVYELFPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 47.7 bits (114), Expect = 1e-05
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 1134
LS G+KQ + I L + P+++LLDE + + L + + ++V H +
Sbjct: 148 LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMG 207
Query: 1135 TIIH-ADEILVMHAGEIVERGRHEEL 1159
+ AD++ V+H G ++ G +E+
Sbjct: 208 FVREIADKVTVLHEGSVLAEGSLDEV 233
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional.
Length = 271
Score = 47.7 bits (113), Expect = 1e-05
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 1133
LS G+K+RVAIA L+ + +LLDE T+ LD + + + R+ A II +H +
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196
Query: 1134 STIIH-ADEILVMHAGEIVERGRHEELLER 1162
I +D + V+ G+I+ G E+
Sbjct: 197 DLIYEISDAVYVLRQGQILTHGAPGEVFAC 226
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 47.7 bits (113), Expect = 2e-05
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTI 1127
+R LSGG++QRVAIAR L++ +++L DE ++LD ++ R + L + + T +
Sbjct: 148 QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVV 207
Query: 1128 IVAHRLSTII-HADEILVMHAGEIVERG 1154
+ H++ + + + I+ + G + G
Sbjct: 208 VTLHQVDYALRYCERIVALRQGHVFYDG 235
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 46.9 bits (112), Expect = 2e-05
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 56/178 (31%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAI-------GVVPQDTV 988
G +GAGK+T++R+L ++G+++ + I+ V + S QA+ G+ + T
Sbjct: 34 TGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESYHQALLYLGHQPGIKTELTA 92
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
L N + F + R + S + + EA
Sbjct: 93 LEN--LHF---WQRFHGS--------------------------------GNAATIWEAL 115
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
+ D VG+ LS G+++RVA+AR L + +LDE +ALD
Sbjct: 116 AQVGLAGLE-------DLPVGQ----LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 45.7 bits (108), Expect = 4e-05
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 47/188 (25%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKF 996
G +GAGK+T+++L+ + E G+I + Q+IK +Q V + + +++
Sbjct: 34 GSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE 93
Query: 997 NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056
N Y DIH + + E + E
Sbjct: 94 NCLY-----------------DIH----------------FSPGAVGITELCRLFSL-EH 119
Query: 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA 1116
++ +P G LS G+K++VA+ R + ++ LLDE ALD E ++ +
Sbjct: 120 LIDYPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLTI 166
Query: 1117 LNRVCASR 1124
+ ++ R
Sbjct: 167 ITKIQEHR 174
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
[Transport and binding proteins, Other].
Length = 1394
Score = 47.4 bits (113), Expect = 5e-05
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 1038 NASEEEVKEAATSADIHERILSFPDGYDTQVGE---RGLKLSGGEKQRVAIARTLLKAPQ 1094
S EE A AD++ +T+VG RG+ SGGE++RV+IA L +
Sbjct: 174 GVSREEY--AKHIADVYMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAK 229
Query: 1095 IVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVA-HRLSTIIHA--DEILVMHAGE 1149
I D AT LD+ T AL + A+ TT +VA ++ S + D+++V++ G
Sbjct: 230 IQCWDNATRGLDSATALEFIRAL-KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGY 288
Query: 1150 IVERG 1154
+ G
Sbjct: 289 QIYFG 293
Score = 36.2 bits (84), Expect = 0.13
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 937 GQSGAGKSTIIRLLFRFYD---VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 993
G SGAGK+T++ +L + GD ++ + + +S +++IG V Q
Sbjct: 796 GASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL----DSSFQRSIGYVQQQD------ 845
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASE--EEVKEAATSA 1051
++ V+E+ L F Y Q ++ SE E V+E
Sbjct: 846 ---------LHLPTSTVRES----------LRF-SAYLRQPKSVSKSEKMEYVEEVI--- 882
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQ-IVLLDEATSALDTKTE 1110
++L D VG G L+ +++R+ I L+ P+ ++ LDE TS LD++T
Sbjct: 883 ----KLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA 938
Query: 1111 RNI-QSALNRVCASRTTIIVAHRLSTIIHA--DEILVMHAG 1148
+I + + + H+ S I+ D +L++ G
Sbjct: 939 WSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 46.6 bits (111), Expect = 6e-05
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVC 1121
G+ TQ+G LSGG +Q+V I R LL P+I++LDE T +D + I Q
Sbjct: 384 GHRTQIGS----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439
Query: 1122 ASRTTIIVAHRLSTIIH-ADEILVMHAGE---IVERGR--HEELLERNGVY 1166
+ II++ + ++ D ILVM G IV+ E+L ++
Sbjct: 440 KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEILRLASLH 490
Score = 41.3 bits (97), Expect = 0.003
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK-TVSQASLRQAIGVVPQD 986
G++GAGKST+++ LF Y +SG I + I S+ +L I +V Q+
Sbjct: 31 GENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81
Score = 32.8 bits (75), Expect = 1.4
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 1070 ERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII- 1128
+ LS + Q + IA+ +IV++DE TS+L K ++ + + ++ I+
Sbjct: 130 AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVY 189
Query: 1129 VAHRLSTIIH-ADEILVMHAGEIV 1151
++H++ I DEI ++ G+ +
Sbjct: 190 ISHKMEEIFQLCDEITILRDGQWI 213
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding
export protein. CcmA, the ATP-binding component of the
bacterial CcmAB transporter. The CCM family is involved
in bacterial cytochrome c biogenesis. Cytochrome c
maturation in E. coli requires the ccm operon, which
encodes eight membrane proteins (CcmABCDEFGH). CcmE is a
periplasmic heme chaperon that binds heme covalently and
transfers it onto apocytochrome c in the presence of
CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC
transporter and the CcmCD proteins participate in heme
transfer to CcmE.
Length = 201
Score = 44.8 bits (106), Expect = 7e-05
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 1067 QVGERGLK------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV 1120
+VG G + LS G+++RVA+AR LL + +LDE T+ALD A+
Sbjct: 112 RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171
Query: 1121 CASRTTIIVA 1130
CA +++
Sbjct: 172 CARGGMVVLT 181
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is structurally
related to that of helicases.
Length = 261
Score = 45.7 bits (109), Expect = 7e-05
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1053 IHERILSFPD---GYDTQVGERGLKLSGGEKQRVAIARTLLKA---PQIVLLDEATSALD 1106
I ++ + D GY ++G+ LSGGE QR+ +A+ L K + +LDE T+ L
Sbjct: 146 IARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLH 204
Query: 1107 TKTERNIQSALNR-VCASRTTIIVAHRLSTIIHADEILVM------HAGEIVERG 1154
+ + L R V T +++ H L I AD I+ + G++V G
Sbjct: 205 FHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASG 259
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 44.8 bits (106), Expect = 1e-04
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 1132
SGGEK+R I + + P++ +LDE+ S LD + + +N + R+ IIV H R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206
Query: 1133 LSTIIHADEILVMHAGEIVERGRH 1156
+ I D + V++ G IV+ G
Sbjct: 207 ILDYIKPDYVHVLYQGRIVKSGDF 230
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal biogenesis,
formation of translation preinitiation complexes, and
assembly of HIV capsids. RLI s are not transport proteins
and thus cluster with a group of soluble proteins that
lack the transmembrane components commonly found in other
members of the family. Structurally, RLIs have an
N-terminal Fe-S domain and two nucleotide binding domains
which are arranged to form two composite active sites in
their interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role in
archaeal and eukaryotic physiology.
Length = 255
Score = 45.1 bits (107), Expect = 1e-04
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 1133
LSGGE QRVAIA L + DE +S LD K N + + ++V H L
Sbjct: 140 LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199
Query: 1134 S 1134
+
Sbjct: 200 A 200
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 45.3 bits (107), Expect = 2e-04
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 1133
+SGGE++RV+IA +L P +++LDE TS LD + L + TI+ + H+
Sbjct: 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQP 266
Query: 1134 STIIHA--DEILVMHAGEIVERGR 1155
S+ ++ D +LV+ G + G+
Sbjct: 267 SSRVYQMFDSVLVLSEGRCLFFGK 290
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 44.8 bits (106), Expect = 2e-04
Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 36/223 (16%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA-SLRQAIGVVPQDTVLFNN-S 993
+G++GAGKST++++L ++ G I I+N N + + + IG++ Q+ + + +
Sbjct: 37 LGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELT 96
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
+ N+ R +++ D + R+ A+ ++ +
Sbjct: 97 VLENLYIGRHLT---------------KKVCGVNI-IDWREMRVRAAMMLLR-----VGL 135
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ D +V LS KQ + IA+TL+ +++++DE TS+L K +
Sbjct: 136 KVDL-------DEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184
Query: 1114 QSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIVERG 1154
+N++ T I+ ++H+L+ I D VM G V G
Sbjct: 185 FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
Score = 42.1 bits (99), Expect = 0.002
Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 36/223 (16%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQ---DTVLFNN 992
G G+G++ ++ LF G+I ++ ++I S ++++ + + + D F N
Sbjct: 296 GLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355
Query: 993 -SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
SI N+ +R +K+ GY + +E+
Sbjct: 356 FSIAQNMAISR------SLKDG---------------GYKGAMGLFHEVDEQRTAENQRE 394
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ + S + + E LSGG +Q+V I++ L P++++ DE T +D +
Sbjct: 395 LLALKCHSV----NQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKA 446
Query: 1112 NIQSALNRVCAS-RTTIIVAHRLSTIIHA-DEILVMHAGEIVE 1152
I + ++ + ++V+ L II D I V G + +
Sbjct: 447 EIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 43.8 bits (104), Expect = 3e-04
Identities = 51/229 (22%), Positives = 86/229 (37%), Gaps = 54/229 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G +GAGKST+++L+ Y SG + + V+ + G P+ T N I
Sbjct: 59 IGHNGAGKSTLLKLIAGIYKPTSGKVKVT----GKVA-PLIELGAGFDPELTGREN--IY 111
Query: 996 FNIQYARINA-SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
I + +E+ E + I+ F A++
Sbjct: 112 L---RGLILGLTRKEIDEKV------DEIIEF------------------------AELG 138
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
+ I D V S G R+A + P I+LLDE + D +
Sbjct: 139 DFI-------DQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187
Query: 1115 SALN-RVCASRTTIIVAHRLSTI-IHADEILVMHAGEIVERGRHEELLE 1161
LN V ++T ++V+H L I + D + + G+I G EE++
Sbjct: 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 42.0 bits (98), Expect = 3e-04
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 1068 VGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-------NRV 1120
VG + SG + R+A+A P +++LDE TS LD + E + +
Sbjct: 54 VGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS 113
Query: 1121 CASRTTIIVAHRLSTIIHA 1139
+ T I+ + + A
Sbjct: 114 EKNLTVILTTNDEKDLGPA 132
Score = 33.1 bits (75), Expect = 0.38
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDN 965
VG G+GK+T+ R L R G + +
Sbjct: 8 VGPPGSGKTTLARALARELGPPGGGVIYID 37
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is structurally
related to that of helicases.
Length = 226
Score = 43.0 bits (102), Expect = 4e-04
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTKTERNIQSALNRV-CASRTTIIVAH 1131
LSGGE QR+ +A + VL LDE + L + + L R+ T ++V H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 1132 RLSTIIHADEILVM------HAGEIVERG 1154
TI AD ++ + H GEIV +G
Sbjct: 198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG 226
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 43.6 bits (103), Expect = 5e-04
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTII-VA 1130
LKLS G+K+R+A+ LL+ I++LDE + D R Q L + TI ++
Sbjct: 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506
Query: 1131 HRLSTIIHADEILVMHAGEIVER 1153
H IHAD +L M G++ E
Sbjct: 507 HDDHYFIHADRLLEMRNGQLSEL 529
Score = 35.5 bits (82), Expect = 0.17
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990
+G +G+GKST+ LL Y +SG+I +D + + R+ V D LF
Sbjct: 355 IGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit. Possible
exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 39.5 bits (93), Expect = 5e-04
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 15/70 (21%)
Query: 1061 PDGYDTQVGERGLKLSGGEKQR---VAIARTLL---------KAPQIVLLDEATSALDTK 1108
DG + ++ LSGGEKQ +A+A L AP+++ LDEA + LD
Sbjct: 9 EDGSERELSRDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLD-- 66
Query: 1109 TERNIQSALN 1118
E NI+S L
Sbjct: 67 -EENIRSLLE 75
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent an
ABC transporter; ccmC and D participate in heme transfer
to ccmE, which function as a periplasmic heme chaperone.
The presence of ccmF, G and H is suggested to be
obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide secretion
and trafficking, Transport and binding proteins, Other].
Length = 198
Score = 42.0 bits (99), Expect = 6e-04
Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 67/183 (36%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ------AIGVVPQDTVL 989
G +G GK+T++R+L +SG++ + + R G+ P+ + L
Sbjct: 32 TGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91
Query: 990 FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
N L F +A I+ + E A
Sbjct: 92 EN--------------------------------LHF-------WAAIHGGAQRTIEDAL 112
Query: 1050 SADIHERILSFPDGYDTQVGERGLK------LSGGEKQRVAIARTLLKAPQIVLLDEATS 1103
VG G + LS G+++R+A+AR L + +LDE T+
Sbjct: 113 ----------------AAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156
Query: 1104 ALD 1106
ALD
Sbjct: 157 ALD 159
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein
UrtD. Members of this protein family are ABC transporter
ATP-binding subunits associated with urea transport and
metabolism. This protein is found in a conserved
five-gene transport operon typically found adjacent to
urease genes. It was shown in Cyanobacteria that
disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 242
Score = 42.2 bits (100), Expect = 7e-04
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSAL-DTKTERNIQSALNRVCASRTTIIVAHRL 1133
LS G+KQ + I L++ P+++LLDE + + D +TE+ + L + + ++V H +
Sbjct: 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDM 202
Query: 1134 STIIH-ADEILVMHAGEIVERG 1154
+ AD++ V+H G ++ G
Sbjct: 203 EFVRSIADKVTVLHQGSVLAEG 224
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 43.4 bits (103), Expect = 7e-04
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 1073 LKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTII-VA 1130
LKLS G+K+R+A+ L + I+LLDE + D R Q L + TI ++
Sbjct: 448 LKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAIS 507
Query: 1131 HRLSTIIHADEILVMHAGEIVE-RGRHEELLERNGV 1165
H IHAD +L M G++ E G + R+ V
Sbjct: 508 HDDHYFIHADRLLEMRNGQLSELTGEERDAASRDAV 543
Score = 39.6 bits (93), Expect = 0.011
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 990
+G +G+GKST+ LL Y +SG+I +D + + R+ V D LF
Sbjct: 355 IGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLF 409
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the complex
and transporter protein are present on the same operon.
Often times these compounds cross the biological membrane
by specific transporters. Syringomycin is an amphipathic,
cylclic lipodepsipeptide when inserted into host causes
formation of channels, permeable to variety of cations.
On the other hand, pyoverdine is a cyclic octa-peptidyl
dihydroxyquinoline, which is efficient in sequestering
iron for uptake [Transport and binding proteins, Amino
acids, peptides and amines, Transport and binding
proteins, Other].
Length = 555
Score = 43.4 bits (102), Expect = 7e-04
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 48/221 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG++G GKST+ +L Y + G+I +D + S+ R + D LF++ I
Sbjct: 374 VGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG 433
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+E + A+ QY + ++VK
Sbjct: 434 -----------PDEGEHASLDN-------------AQQYLQRLEIADKVKIEDG------ 463
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER---- 1111
G+ T LS G+++R+A+ L+ I+L DE + D +R
Sbjct: 464 -------GFSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYE 511
Query: 1112 NIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVE 1152
+ L R +T II++H AD+I+ + AG IV+
Sbjct: 512 ELLPDLKR--QGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 41.4 bits (97), Expect = 0.002
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 26/111 (23%)
Query: 1063 GYDTQVGERGLKLSGGEKQRVAIARTLLK---------APQIVLLDEATSALDTKTERNI 1113
G VG LSGGE RV AR L + P+ +LLDE T+ALD + +
Sbjct: 134 GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRL 193
Query: 1114 QSALNRVCASRT------TII----VAHRLSTIIHADEILVMHAGEIVERG 1154
+ R+ +R I+ +A R HAD I ++ G IV G
Sbjct: 194 LDTVRRL--ARDWNLGVLAIVHDPNLAAR-----HADRIAMLADGAIVAHG 237
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 42.2 bits (100), Expect = 0.002
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
LSGGE+ R+ +AR LK +++LDE T+ LD +T
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475
Score = 41.9 bits (99), Expect = 0.002
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
LSGG ++ A+ R L+ P ++LLDE T+ LD +T
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 41.8 bits (98), Expect = 0.003
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 1065 DTQVGERGLK-LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-NRVCA 1122
D VG G+ LS +++R+ IA L+ P I+ +DE TS LD + + + N V
Sbjct: 1009 DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068
Query: 1123 SRTTIIVAHRLSTIIHA--DEILVMHAG 1148
RT + H+ S I DE+L+M G
Sbjct: 1069 GRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
Score = 40.2 bits (94), Expect = 0.007
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 21/119 (17%)
Query: 1056 RILSFPDGYDTQVGERGLK-LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
+IL DT VG+ ++ +SGG+K+RV ++ + + +DE ++ LD+ T I
Sbjct: 317 KILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIV 376
Query: 1115 SALNRVCASRTTIIVAHRLSTIIHA------------DEILVMHAGEIVERGRHEELLE 1161
L + IV +T++ + D+I+++ G+IV +G + +LE
Sbjct: 377 KCLQQ--------IVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILE 427
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.
Length = 530
Score = 41.0 bits (97), Expect = 0.003
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 1078 GEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN-RVCASRTTIIVAH 1131
G K RV +A+ L P I+LLDE T+ LD T R ++ LN R T II++H
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNS---TMIIISH 210
Score = 36.4 bits (85), Expect = 0.096
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-R- 1132
LSGGEK R+ + +++ P ++++DE T+ +D ++ ++ AL + T I V+H R
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDRE 496
Query: 1133 -LSTIIHADEILVMHAGEIVE-RGRHEELLERNGV 1165
+S++ A I+ + +V+ G +EE L G+
Sbjct: 497 FVSSL--ATRIIEITPDGVVDFSGTYEEYLRSQGI 529
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 41.1 bits (97), Expect = 0.004
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR-L 1133
LSGG +Q+ + R L + +++LLDE T +D + I + + + A ++ L
Sbjct: 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456
Query: 1134 STIIH-ADEILVMHAGEIVERGRHEELLERN 1163
++ AD I+VM G I E+ ER
Sbjct: 457 PEVLGVADRIVVMREGRIAGELAREQATERQ 487
Score = 38.0 bits (89), Expect = 0.035
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 1065 DTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR 1124
DT + LS G++Q V IA+ L + +++ DE TS+L + + + + A
Sbjct: 135 DTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEG 190
Query: 1125 TTII-VAHRLSTIIH-ADEILVMHAGEIVE 1152
I+ V+HR+ I D I V G V
Sbjct: 191 RVILYVSHRMEEIFALCDAITVFKDGRYVA 220
Score = 34.5 bits (80), Expect = 0.32
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK-TVSQASLRQAIGV-------VPQDTV 988
G++GAGKST++++L Y ++G I ID Q ++ + A+L + + VP+ TV
Sbjct: 37 GENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV 96
Query: 989 LFN 991
N
Sbjct: 97 AEN 99
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 39.8 bits (93), Expect = 0.011
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 1068 VGERGLKLSGGEKQRVAIARTLL---KAPQIVLLDEATSALDTKTERNIQSALNR-VCAS 1123
+G+ LS EK + IA+ L K P + LLDE ++LD + + + L V
Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG 1752
Query: 1124 RTTIIVAHRLSTIIHADEILVMHAG 1148
+ I + H + + AD ++ M G
Sbjct: 1753 HSVIYIDHDPALLKQADYLIEMGPG 1777
Score = 37.1 bits (86), Expect = 0.072
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 1075 LSGGEKQRVAIARTLL---KAPQIVLLDEATSALDT-KTERNIQSALNRVCASRTTIIVA 1130
LSGGE QR+ +A LL K P + +LDE T+ L T + I + T +I+
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869
Query: 1131 HRLSTIIHADEIL 1143
H + + AD +L
Sbjct: 870 HNMHVVKVADYVL 882
Score = 32.9 bits (75), Expect = 1.5
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 1070 ERGLK-LSGGEKQRVAIARTLLKAPQIV--LLDEATSALDTK-TERNIQSALNRVCASRT 1125
ER L LSGGE++R A+A+ L + +LDE + L + T + I T
Sbjct: 471 ERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNT 530
Query: 1126 TIIVAHRLSTIIHADEIL------VMHAGEIVERGRHEELLERNGVYASMWIQQNTKQSE 1179
++V H I AD I+ + GE++ G E L ++ + +++Q
Sbjct: 531 VLLVEHDEQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSDSLTAKYLRQELTIPI 590
Query: 1180 PSSDESPPSS 1189
P + +
Sbjct: 591 PEKRTNSLGT 600
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 39.7 bits (93), Expect = 0.012
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 22/82 (26%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ------IVLLDEATSALDTKTERNIQSALNRVCA-----S 1123
LSGGEK A+A LL A Q +LDE +ALD + N++ RV S
Sbjct: 1067 LSGGEKSLTALA--LLFAIQKYRPAPFYVLDEVDAALD---DANVE----RVARLIKEMS 1117
Query: 1124 RTT--IIVAHRLSTIIHADEIL 1143
+ T I++ HR T+ AD ++
Sbjct: 1118 KETQFIVITHRKGTMEAADRLV 1139
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No known
transmembrane proteins or domains are associated with
these proteins.
Length = 162
Score = 37.3 bits (87), Expect = 0.015
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 1073 LKLSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNR-VCASRTTI 1127
L+LSGGEK+ A+A L LK + +LDE LD + + + A+ + I
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 1128 IVAHRLSTIIHAD---EILVMHAG 1148
++ H AD I + G
Sbjct: 136 VITHLPELAELADKLIHIKKVITG 159
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a
member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin belongs
to the SMC protein family. SMC proteins are large
(approximately 110 to 170 kDa), and each is arranged into
five recognizable domains. Amino-acid sequence homology
of SMC proteins between species is largely confined to
the amino- and carboxy-terminal globular domains. The
amino-terminal domain contains a 'Walker A'
nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a sequence
(the DA-box) that resembles a 'Walker B' motif, and a
motif with homology to the signature sequence of the
ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these sequences.
In eukaryotic cells, the proteins are found as
heterodimers of SMC1 paired with SMC3, SMC2 with SMC4,
and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 37.4 bits (88), Expect = 0.023
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 22/79 (27%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ------IVLLDEATSALDTKTERNIQSALNRVCA-----S 1123
LSGGEK A+A LL A +LDE +ALD + N++ R S
Sbjct: 114 LSGGEKALTALA--LLFAIFRVRPSPFCVLDEVDAALD---DANVE----RFARLLKEFS 164
Query: 1124 RTT--IIVAHRLSTIIHAD 1140
+ T I++ HR T+ AD
Sbjct: 165 KETQFIVITHRKGTMEAAD 183
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 38.2 bits (89), Expect = 0.030
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query: 1067 QVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 1126
+V E + SGGEK R+ +A + + P ++LLDE T+ LD + + AL +
Sbjct: 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGAL 480
Query: 1127 IIVAH-----RLSTIIHADEILVMHAGEIVE--RGRHEELLERNGVYASMWIQQNTKQSE 1179
++V+H R +T D++ ++H G+ VE G E+ Y ++++
Sbjct: 481 VVVSHDRHLLRSTT----DDLYLVHDGK-VEPFDGDLED-------YQQWLSDVQKQENQ 528
Query: 1180 PSSDESPPSS-TAQ 1192
++ +AQ
Sbjct: 529 TDEAPKENNANSAQ 542
Score = 31.3 bits (71), Expect = 3.5
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 24/114 (21%)
Query: 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT----ERNIQSALNRVCASRTTIIVAH 1131
SGG + R+ +A+ L+ ++LLDE T+ LD E+ ++S T I+++H
Sbjct: 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS------YQGTLILISH 204
Query: 1132 R---LSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNTKQSEPSS 1182
L I+ D+I+ H +E+ + L E G Y+S +Q+ T+ ++ +
Sbjct: 205 DRDFLDPIV--DKII--H----IEQ---QSLFEYTGNYSSFEVQRATRLAQQQA 247
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 38.0 bits (88), Expect = 0.033
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ------IVLLDEATSALDTKTERNIQSALNRVCASRTT-- 1126
LSGGEK VA+A L+ A Q LLDE +ALD ++N+ N +
Sbjct: 1079 LSGGEKTLVALA--LIFAIQKYRPAPFYLLDEIDAALD---DQNVSRVANYLKELSKNAQ 1133
Query: 1127 -IIVAHRLSTIIHADEIL 1143
I+++ R + AD ++
Sbjct: 1134 FIVISLREEMLEKADRLV 1151
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 36.7 bits (85), Expect = 0.047
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQDTVLF 990
+G SG GK+T++RL+ + G+I D +NI +S++ L R+ + ++ Q LF
Sbjct: 39 MGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96
Score = 33.2 bits (76), Expect = 0.61
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 19/106 (17%)
Query: 1068 VGERGL------KLSGGEKQRVAIARTLLKAPQIVLLDEA-------TSALDTKTERNIQ 1114
VG RG +LSGG +R A+AR + P +++ DE T + K +
Sbjct: 131 VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELN 190
Query: 1115 SALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEEL 1159
SAL C ++V+H + ++ AD ++ +IV G + L
Sbjct: 191 SALGVTC-----VVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 36.3 bits (85), Expect = 0.049
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
LS G+++RVA+AR L + +LDE +A+D +
Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ 163
Score = 29.8 bits (68), Expect = 7.4
Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 933 LLQV-GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 969
L+Q+ G +GAGK++++R+L ++G++ + I+
Sbjct: 29 LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR 66
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 36.2 bits (84), Expect = 0.15
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 18/80 (22%)
Query: 1075 LSGGEKQRVAIART----LLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-----SRT 1125
LSGGEK A+A +K +LDE + LD + N++ R S+
Sbjct: 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLD---DANVE----RFANLLKEFSKN 1142
Query: 1126 T--IIVAHRLSTIIHADEIL 1143
T I++ H T+ AD++
Sbjct: 1143 TQFIVITHNKGTMEVADQLY 1162
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 35.0 bits (81), Expect = 0.17
Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 1132
L+ G+++R+ IAR ++ P+I++LDE + L+ K + + + + T +++ H
Sbjct: 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD 213
Query: 1133 LSTIIH-ADEILVMHAGEIVERGRHEELLERN 1163
+ ++ +D I V++ G + G EE+ RN
Sbjct: 214 MKLVMGISDRIYVVNQGTPLANGTPEEI--RN 243
Score = 30.3 bits (69), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 968
+G +GAGK+T+ L FY G I + Q+I
Sbjct: 37 IGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 35.0 bits (82), Expect = 0.28
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 29/106 (27%)
Query: 1075 LSGGEKQRVAIARTLLKAPQI------VL--LDEATSALDTK-TERNIQSALNRVCASR- 1124
LSGGE QR+ +A T QI VL LDE + L + +R I++ L + R
Sbjct: 490 LSGGEAQRIRLA-T-----QIGSGLTGVLYVLDEPSIGLHQRDNDRLIET-LKHL---RD 539
Query: 1125 ---TTIIVAHRLSTIIHADEILVM------HAGEIVERGRHEELLE 1161
T I+V H TI AD I+ + H GE+V G EE+++
Sbjct: 540 LGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585
Score = 32.4 bits (75), Expect = 1.7
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVA 1130
LSGGE QRV +A+ L K + +LDE T+ L + R + L+R V T +++
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIE 890
Query: 1131 HRLSTIIHADEILVM------HAGEIVERGRHEELLE 1161
H L I AD I+ + GEIV G EE+ +
Sbjct: 891 HNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927
>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA
polymerase). A reverse transcriptase gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. Reverse transcriptases occur in a variety
of mobile elements, including retrotransposons,
retroviruses, group II introns, bacterial msDNAs,
hepadnaviruses, and caulimoviruses.
Length = 194
Score = 33.1 bits (76), Expect = 0.52
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 862 LPKKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIG 918
+PKK K R IS + K + + KR+E Q GFR G+ T + +
Sbjct: 1 IPKKGKGKY-RPISSV--DYKILNKATKKRLEPIFSPP----QPGFRPGRSTHNLLK 50
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 33.1 bits (77), Expect = 0.53
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 936 VGQSGAGKSTIIRLL 950
VGQSG GKST++ L
Sbjct: 91 VGQSGVGKSTLLNAL 105
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 34.1 bits (78), Expect = 0.54
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 1075 LSGGEKQ------RVAIARTLLKAPQIVLLDEATSALDTKTERN----IQSALNRVCASR 1124
LSGGEK RVA+A+ L ++++DE T+ LD N I+ +L
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861
Query: 1125 TTIIVAH 1131
I+++H
Sbjct: 862 QVIMISH 868
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 32.5 bits (75), Expect = 0.59
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 936 VGQSGAGKSTIIRLL 950
GQSG GKST++ L
Sbjct: 41 AGQSGVGKSTLLNAL 55
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 32.9 bits (75), Expect = 0.65
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVP 984
LL G +GAGK+T++R+L VESG I ID + ++ +G +P
Sbjct: 40 LLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP 91
Score = 31.4 bits (71), Expect = 1.9
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1074 KLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
+LS G+K+R+A+AR L + LLDE + LD
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 33.2 bits (75), Expect = 0.75
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 5/147 (3%)
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDT--QYARINASEEEVKE 1046
+ K + + E + S + S ++ I + ++
Sbjct: 102 SKESFEKSPEKKRELRGLREVLLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRN 161
Query: 1047 AATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQ---IVLLDEATS 1103
+ L + +S G K+ +A+ LL A ++L+DE +
Sbjct: 162 IELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPEN 221
Query: 1104 ALDTKTERNIQSALNRVCASRTTIIVA 1130
L K R + L + +I
Sbjct: 222 GLHPKLLRKLVELLKELSEKGAQLIFT 248
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 33.5 bits (76), Expect = 0.91
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 1029 GYDTQYARINASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQ------R 1082
G D +Y I + +E A+ + + G DT + RG + S G+K R
Sbjct: 1156 GQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIR 1213
Query: 1083 VAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT 1125
+A+A T I+ LDE T+ LD + ++ AL + SR+
Sbjct: 1214 LALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRS 1256
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein
ModF; Provisional.
Length = 490
Score = 33.1 bits (76), Expect = 1.1
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 1133
LS GE ++ + + L+ P +++LDE LD + + + L + S T++ V +R
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF 195
Query: 1134 STI-IHADEILVMHAGEIVERGRHEELLER 1162
I V+ + E G EE+L++
Sbjct: 196 DEIPDFVQFAGVLADCTLAETGEREEILQQ 225
Score = 31.5 bits (72), Expect = 2.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 1106
LS G+++ I R L+K P +++LDE LD
Sbjct: 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 31.4 bits (71), Expect = 1.3
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 985
G SG GK++++R L V +G +N +LR+ + + +
Sbjct: 30 TGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELLRQLLR 79
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 32.7 bits (75), Expect = 1.6
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIF----IDNQNIKTVS 972
VG SG+GKST R F+ +V S D D++N ++ S
Sbjct: 14 VGASGSGKSTFARKHFKPTEVLSSDFCRGLVSDDENDQSAS 54
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 31.7 bits (73), Expect = 2.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDI 961
GQSG GKST++ L ++++G+I
Sbjct: 170 AGQSGVGKSTLLNALAPDLELKTGEI 195
>gnl|CDD|180263 PRK05799, PRK05799, coproporphyrinogen III oxidase; Provisional.
Length = 374
Score = 31.9 bits (73), Expect = 2.1
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 867 NAKECRTISCICHLTKAVTR---IVLKRIENKIEENMEEDQF-GFRKGKG 912
N K IS I K + V + +N I++NMEE F G RK KG
Sbjct: 268 NGKRYENISNIEKYIKEINENNSAVEEIHKNSIKDNMEEFMFMGLRKIKG 317
>gnl|CDD|238828 cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs)
with group II intron origin. RT transcribes DNA using
RNA as template. Proteins in this subfamily are found in
bacterial and mitochondrial group II introns. Their most
probable ancestor was a retrotransposable element with
both gag-like and pol-like genes. This subfamily of
proteins appears to have captured the RT sequences from
transposable elements, which lack long terminal repeats
(LTRs).
Length = 226
Score = 31.4 bits (72), Expect = 2.3
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 864 KKTNAKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAI 917
K N K+ R + + V + +E E + +GFR G+ DA+
Sbjct: 6 PKPNGKK-RPLGIPTVRDRIVQEALKLVLEPIYEPRFSDCSYGFRPGRSAHDAL 58
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 31.0 bits (70), Expect = 2.5
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 933 LLQVGQSGAGKSTIIRLL---FRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 989
L+ +G G+GK TI ++L +Y + +GD+F +N ++ L + I + ++ L
Sbjct: 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFREN----ILNSTPLGKEIKQIVENGQL 58
Query: 990 FNNSIKFNIQYARINA 1005
+SI I +IN
Sbjct: 59 VPDSITIKIVEDKINT 74
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 31.8 bits (72), Expect = 2.9
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 912 GTRDAIGCLR-MIALESQLVWYLLQVGQSGAGKSTIIRLLF-RFYDVESGDIFID----N 965
G D I + ++ LES+ V + G SG GK+TI R LF R +FID +
Sbjct: 188 GIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247
Query: 966 QNIKTVSQASLRQ-AIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERIL 1024
++++ S A+ + + Q L K +I+ + A EE +K H ++L
Sbjct: 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLK--------HRKVL 299
Query: 1025 SFPDGYDTQ 1033
F D D Q
Sbjct: 300 IFIDDLDDQ 308
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 30.2 bits (69), Expect = 2.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 937 GQSGAGKSTIIRLLFRFYD 955
G SG GKST+++ L +D
Sbjct: 6 GPSGVGKSTLLKRLLEEFD 24
>gnl|CDD|234335 TIGR03732, lanti_perm_MutE, lantibiotic protection ABC transporter
permease subunit, MutE/EpiE family. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family is largely restricted to
gallidermin-family lantibiotic cassettes, but also
include orphan transporter cassettes in species that
lack candidate lantibiotic precursor and synthetase
genes. In most species, this subunit is paralogous to an
adjacent gene, modeled separately.
Length = 241
Score = 31.1 bits (71), Expect = 3.2
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 381 WPKKSALLKLQVIICILLLIIARVINLFVPIYN----RLLVIIIIIIILSGWE 429
K + +I CI+L I +I +P N + L+ ++I + S W+
Sbjct: 87 IAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQ 139
>gnl|CDD|216512 pfam01455, HupF_HypC, HupF/HypC family.
Length = 67
Score = 28.6 bits (65), Expect = 3.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Query: 581 GGEKQRVAIALNSLVDKPLVFRWDYVLIFVGF 612
GG ++ V++AL V + V DYVL+ VGF
Sbjct: 23 GGVRREVSLAL---VPEVKV--GDYVLVHVGF 49
>gnl|CDD|216898 pfam02141, DENN, DENN (AEX-3) domain. DENN (after differentially
expressed in neoplastic vs normal cells) is a domain
which occurs in several proteins involved in Rab-
mediated processes or regulation of MAPK signalling
pathways.
Length = 185
Score = 30.6 bits (70), Expect = 3.4
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 21/110 (19%)
Query: 236 YSNRATNVLPSKLYYFQIFMSVLMCLVVVVKYALEAALIHQRTLFMYQIV-------SGG 288
S +A ++ S+L +F++F L L + + + F+ ++ G
Sbjct: 1 RSPKAYCII-SRLPFFELFKKFLDELYTRRTISP-PLPLER---FIANLLYEVPFPPPGR 55
Query: 289 LLLFSFTFATYLVSLER--NYRLPTAPPQGHGLVLLVFW----TMLLIFA 332
+ T L+ L+R + L P G L LL +L +F
Sbjct: 56 TQVLKPLGVTELILLQRPSDSEL---PLSGVDLHLLFRCLGPENVLQLFE 102
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 30.1 bits (69), Expect = 4.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 939 SGAGKSTIIRLLF 951
SGAGKST+++ L
Sbjct: 14 SGAGKSTLVKALL 26
>gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 30.6 bits (70), Expect = 5.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDI 961
VGQSG GKS++I L ++ GD+
Sbjct: 211 VGQSGVGKSSLINALLPEAEILVGDV 236
>gnl|CDD|183528 PRK12440, PRK12440, acetate kinase; Reviewed.
Length = 397
Score = 30.6 bits (69), Expect = 5.2
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 780 IQTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNN 823
+ TY+VA+Y S L L+SL +I TGG+ SL E++ N
Sbjct: 302 VFTYRVAKYIASY-LAALDSLDGIIFTGGIGENSLPIRREILKN 344
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 30.2 bits (69), Expect = 5.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 933 LLQVGQSGAGKSTIIRLLF 951
++ VG+SG GKST I LF
Sbjct: 7 IMVVGESGLGKSTFINTLF 25
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 29.8 bits (68), Expect = 6.1
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 937 GQSGAGKSTIIRLLFRFYDVE---SGDIF 962
G G+GK+T+ RLL ++ +G+IF
Sbjct: 7 GPPGSGKTTVARLLAEKLGLKHVSAGEIF 35
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 29.8 bits (68), Expect = 6.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 937 GQSGAGKSTIIRLLFR 952
G SGAGKST+++ L
Sbjct: 7 GPSGAGKSTLVKALLE 22
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 29.6 bits (67), Expect = 6.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 936 VGQSGAGKSTIIRLL---FRFYDVESGDIF 962
+G GAGKST+ + L +++GDI
Sbjct: 6 LGPPGAGKSTLAKKLAKKLGLPHLDTGDIL 35
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the ATP-binding
cassette superfamily. The structural maintenance of
chromosomes (SMC) proteins are essential for successful
chromosome transmission during replication and
segregation of the genome in all organisms. SMCs are
generally present as single proteins in bacteria, and as
at least six distinct proteins in eukaryotes. The
proteins range in size from approximately 110 to 170 kDa,
and each has five distinct domains: amino- and
carboxy-terminal globular domains, which contain
sequences characteristic of ATPases, two coiled-coil
regions separating the terminal domains , and a central
flexible hinge. SMC proteins function together with other
proteins in a range of chromosomal transactions,
including chromosome condensation, sister-chromatid
cohesion, recombination, DNA repair, and epigenetic
silencing of gene expression.
Length = 178
Score = 29.6 bits (67), Expect = 6.6
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 1041 EEEVKEAATSADIHERILSFPDGYD--TQVGERGLKLSGGEKQRVAIARTLLKAPQIV-- 1096
VK SA + ++F Y Q G+ LSGGEK A+A L+ A Q +
Sbjct: 63 GGGVKAGINSASVE---ITFDKSYFLVLQ-GKVEQILSGGEKSLSALA--LIFALQEIKP 116
Query: 1097 ----LLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRLSTIIHADEIL 1143
+LDE +ALD R + + + + I++ + +AD+++
Sbjct: 117 SPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLI 168
>gnl|CDD|197323 cd09089, INPP5c_Synj, Catalytic inositol polyphosphate 5-phosphatase
(INPP5c) domain of synaptojanins. This subfamily
contains the INPP5c domains of two human synaptojanins,
synaptojanin 1 (Synj1) and synaptojanin 2 (Synj2), and
related proteins. It belongs to a family of
Mg2+-dependent inositol polyphosphate 5-phosphatases,
which hydrolyze the 5-phosphate from the inositol ring of
various 5-position phosphorylated phosphoinositides (PIs)
and inositol phosphates (IPs). They belong to the large
EEP (exonuclease/endonuclease/phosphatase) superfamily
that contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. Synj1 occurs as two main isoforms: a brain
enriched 145 KDa protein (Synj1-145) and a ubiquitously
expressed 170KDa protein (Synj1-170). Synj1-145
participates in clathrin-mediated endocytosis. The
primary substrate of the Synj1-145 INPP5c domain is
PI(4,5)P2, which it converts to PI4P. Synj1-145 may work
with membrane curvature sensors/generators (such as
endophilin) to remove PI(4,5)P2 from curved membranes.
The recruitment of the INPP5c domain of Synj1-145 to
endophilin-induced membranes leads to a fragmentation and
condensation of these structures. The PI(4,5)P2 to PI4P
conversion may cooperate with dynamin to produce membrane
fission. In addition to this INPP5c domain, Synjs contain
an N-terminal Sac1-like domain; the Sac1 domain can
dephosphorylate a variety of phosphoinositides in vitro.
Synj2 can hydrolyze phosphatidylinositol diphosphate
(PIP2) to phosphatidylinositol phosphate (PIP). Synj2
occurs as multiple alternative splice variants in various
tissues. These variants share the INPP5c domain and the
Sac1 domain. Synj2A is recruited to the mitochondria via
its interaction with OMP25 (a mitochondrial outer
membrane protein). Synj2B is found at nerve terminals in
the brain and at the spermatid manchette in testis.
Synj2B undergoes further alternative splicing to give 2B1
and 2B2. In clathrin-mediated endocytosis, Synj2
participates in the formation of clathrin-coated pits,
and perhaps also in vesicle decoating. Rac1 GTPase
regulates the intracellular localization of Synj2 forms,
but not Synj1. Synj2 may contribute to the role of Rac1
in cell migration and invasion, and is a potential target
for therapeutic intervention in malignant tumors.
Length = 328
Score = 30.1 bits (68), Expect = 7.4
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 19/79 (24%)
Query: 988 VLFNNSIKFNIQYARINASEEEVKEAATSADIHE--RILSFPDGY------------DTQ 1033
+L + S+ F + A + +VKE + D E R LSFP G D
Sbjct: 146 LLHSTSLCFVC--SHFAAGQSQVKE--RNEDFAEIARKLSFPMGRTLDSHDYVFWCGDFN 201
Query: 1034 YARINASEEEVKEAATSAD 1052
Y RI+ +EVKE + D
Sbjct: 202 Y-RIDLPNDEVKELVRNGD 219
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 29.5 bits (66), Expect = 8.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 973
G +G GKS+++R++ SG+I+ N NI +++
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAK 69
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 28.4 bits (63), Expect = 8.6
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 936 VGQSGAGKSTIIRLLFRFYD---VESGDIFI 963
G G+GKST+ + L + D+
Sbjct: 5 TGPPGSGKSTLAKKLAEKLGIPVISLDDLLR 35
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic SMC3
proteins. The structural maintenance of chromosomes
(SMC) proteins are large (approximately 110 to 170 kDa),
and each is arranged into five recognizable domains.
Amino-acid sequence homology of SMC proteins between
species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code), which
by mutational studies has been shown to be essential in
several proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these sequences.
In eukaryotic cells, the proteins are found as
heterodimers of SMC1 paired with SMC3, SMC2 with SMC4,
and SMC5 with SMC6 (formerly known as Rad18).
Length = 243
Score = 29.5 bits (67), Expect = 8.8
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ------IVLLDEATSALDT 1107
LSGG+K VA+A L+ A Q L DE +ALD
Sbjct: 159 LSGGQKSLVALA--LIFAIQKCDPAPFYLFDEIDAALDA 195
>gnl|CDD|220342 pfam09685, Tic20, Tic20-like protein. Chloroplast function
requires the import of nuclear encoded proteins from the
cytoplasm across the chloroplast double membrane. This
is accomplished by two protein complexes, the Toc
complex located at the outer membrane and the Tic
complex located at the inner membrane. The Toc complex
recognises specific proteins by a cleavable N-terminal
sequence and is primarily responsible for translocation
through the outer membrane, while the Tic complex
translocates the protein through the inner membrane.
This entry represents Tic20, a core member of the Tic
complex. This protein is deeply embedded in the inner
envelope membrane and is thought to function as a
protein- conducting component of the Tic complex. This
family also includes many proteins of unknown function
from non-synthetic organisms.
Length = 104
Score = 28.3 bits (64), Expect = 9.0
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 685 NYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLV 726
+ FQI I +++ I+ F+ F + +I+ ++L
Sbjct: 41 EALNFQISLLIYTVILGILSFILGFIGFLLLILLWILSLVFT 82
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 29.6 bits (67), Expect = 9.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 936 VGQSGAGKSTIIRLL 950
+GQSG GKST+I L
Sbjct: 170 LGQSGVGKSTLINAL 184
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 29.0 bits (66), Expect = 9.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 936 VGQSGAGKSTIIRLLF 951
G SG GKST+++ L
Sbjct: 10 SGPSGVGKSTLVKALL 25
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.412
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 61,294,137
Number of extensions: 6310801
Number of successful extensions: 11104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10726
Number of HSP's successfully gapped: 942
Length of query: 1192
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1084
Effective length of database: 6,147,370
Effective search space: 6663749080
Effective search space used: 6663749080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (28.8 bits)