RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13234
(1192 letters)
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 401 bits (1034), Expect = e-131
Identities = 143/251 (56%), Positives = 173/251 (68%), Gaps = 34/251 (13%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SGAGKSTI+RLLFRFYD+ SG I ID Q+I V+QASLR IGVVPQDTVLFN++I
Sbjct: 86 VGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIA 145
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI+Y R+ A +EV+ AA +A IH+ I++FP+GY TQ
Sbjct: 146 DNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ---------------------- 183
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
VGERGLKLSGGEKQRVAIART+LKAP I+LLDEATSALDT ER IQ+
Sbjct: 184 ------------VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175
+L +VCA+RTTI+VAHRLST+++AD+ILV+ G IVERGRHE LL R GVYA MW Q
Sbjct: 232 SLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG 291
Query: 1176 KQSEPSSDESP 1186
++ +
Sbjct: 292 QEETSEDTKPQ 302
Score = 55.3 bits (134), Expect = 4e-08
Identities = 23/29 (79%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIA 590
MA G T VGERGLKLSGGEKQRVAIA
Sbjct: 174 MAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 388 bits (1000), Expect = e-127
Identities = 109/242 (45%), Positives = 156/242 (64%), Gaps = 35/242 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +G+GKSTI +LL+RFYD E GDI I +N+ ++ S+R IG+VPQDT+LFN +IK
Sbjct: 52 VGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
+NI Y +++A++EEV +A SA +++ I + P +DT
Sbjct: 111 YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTI---------------------- 148
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
VG +G+KLSGGE+QR+AIAR LLK P+IV+ DEATS+LD+KTE Q
Sbjct: 149 ------------VGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175
A+ + +RT II+AHRLSTI A+ I++++ G+IVE+G H++LL+ NG YA MW Q+
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQSG 256
Query: 1176 KQ 1177
Sbjct: 257 GN 258
Score = 55.6 bits (135), Expect = 2e-08
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIA 590
AL +T VG +G+KLSGGE+QR+AIA
Sbjct: 139 EALPKKWDTIVGNKGMKLSGGERQRIAIA 167
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel,
transport protein, casse protein; 2.00A {Homo sapiens}
PDB: 2onj_A* 2hyd_A
Length = 578
Score = 387 bits (997), Expect = e-122
Identities = 168/599 (28%), Positives = 259/599 (43%), Gaps = 111/599 (18%)
Query: 603 WDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHL 662
+ F ++ L W +I +L+ HL LS R++
Sbjct: 61 IAIGIALFIFVIVRPPIEFIRQYLAQ-----WTS--NKILYDIRKKLYNHLQALSARFYA 113
Query: 663 SRKTGEVL-RVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTM 721
+ + G+V+ RV+N + + + L I + I+IA+ +
Sbjct: 114 NNQVGQVISRVIN-DVEQTKDFILTGLMNIWLDCITIIIALSIMFFL-DVKLTLAALFIF 171
Query: 722 ALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQ 781
Y++T V K R+ + A + + + VK + E+ E K + K
Sbjct: 172 PFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNT 231
Query: 782 TYQVAEYQ----NSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSY 837
+ + N+ S +N++ ++ + G+ L + ++TVG FV Y
Sbjct: 232 NFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYL-----AISGSITVGTLAAFVGY 286
Query: 838 ILQLYVPLNWFDALTRYLEASLV-------------PLPKKTNAKECRTISCICHLTKAV 884
+ L+ PL A L S + A+
Sbjct: 287 LELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQP-------------- 332
Query: 885 TRIVLKRIENKIE-ENMEEDQFGFRKGKGTRDAI---------GCLRMIALESQLVWYLL 934
++ + +I+ +++ F+ + G +A
Sbjct: 333 ----IEIKQGRIDIDHV-----SFQYNDNEAPILKDINLSIEKG--ETVAF--------- 372
Query: 935 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 994
VG SG GKST+I L+ RFYDV SG I ID NIK SLR IG+V QD +LF++++
Sbjct: 373 -VGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTV 431
Query: 995 KFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIH 1054
K NI R A++EEV EAA A+ H+ F
Sbjct: 432 KENILLGRPTATDEEVVEAAKMANAHD----F---------------------------- 459
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
I++ P GYDT+VGERG+KLSGG+KQR++IAR L P I++LDEATSALD ++E IQ
Sbjct: 460 --IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517
Query: 1115 SALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
AL+ + RTT+IVAHRLSTI HAD+I+V+ G IVE G H EL+ + G Y ++ Q
Sbjct: 518 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576
Score = 65.7 bits (161), Expect = 5e-11
Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 23/196 (11%)
Query: 373 IKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLN 432
IK F+ P K ++ I++ II I + +P+ + + +I +
Sbjct: 2 IKRYLQFVKPYK-----YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKV 56
Query: 433 MNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELF 492
+ + F ++ L W +I +L+
Sbjct: 57 HHLT--------IAIGIALFIFVIVRPPIEFIRQYLAQ-----WTS--NKILYDIRKKLY 101
Query: 493 RHLHGLSLRWHLSRKTGEVL-RVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTF 551
HL LS R++ + + G+V+ RV+N + + + L I + I+IA+
Sbjct: 102 NHLQALSARFYANNQVGQVISRVIN-DVEQTKDFILTGLMNIWLDCITIIIALSIMFFL- 159
Query: 552 STWYGVIVFTTMALYL 567
+ Y+
Sbjct: 160 DVKLTLAALFIFPFYI 175
Score = 44.5 bits (106), Expect = 2e-04
Identities = 15/19 (78%), Positives = 19/19 (100%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
VGERG+KLSGG+KQR++IA
Sbjct: 471 VGERGVKLSGGQKQRLSIA 489
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 374 bits (963), Expect = e-117
Identities = 150/602 (24%), Positives = 253/602 (42%), Gaps = 96/602 (15%)
Query: 592 NSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFR 651
+ L+ +G L+G + + W+ + LF
Sbjct: 54 DGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCIS-----WVS--GKVVMTMRRRLFG 106
Query: 652 HLHGLSLRWHLSRKTGEVL-RVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFS 710
H+ G+ + + + TG +L R+ ++ +++ + L ++ I+ + S
Sbjct: 107 HMMGMPVAFFDKQSTGTLLSRITY-DSEQVASSSSGALITVVREGASIIGLFIMMFYY-S 164
Query: 711 TWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEE 770
+I+ + + VV++ + M + T + L + V +G +E
Sbjct: 165 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 224
Query: 771 YEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQ----NLIITGGLLAGSLLCVHEVVNNQTL 826
E K + K + +V +S+ LI + L V + L
Sbjct: 225 VETKRFDKVSNKM----RLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDS-L 279
Query: 827 TVGDYTLFVSYILQLYVPLNWFDALTRYLEASLV-----------PLPKKTNAKECRTIS 875
T G T+ S ++ L PL + + + K +
Sbjct: 280 TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRV----- 334
Query: 876 CICHLTKAVTRIVLKRI----ENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVW 931
+ +A + + + + + GK +AL
Sbjct: 335 ----IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGK----------TVAL------ 374
Query: 932 YLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 991
VG+SG+GKSTI L+ RFYD++ G I +D +++ + ASLR + +V Q+ LFN
Sbjct: 375 ----VGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 992 NSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+++ NI YAR S E+++EAA A
Sbjct: 431 DTVANNIAYARTEE---------------------------------YSREQIEEAARMA 457
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+ I +G DT +GE G+ LSGG++QR+AIAR LL+ I++LDEATSALDT++ER
Sbjct: 458 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 1112 NIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWI 1171
IQ+AL+ + +RT++++AHRLSTI ADEI+V+ G IVERG H ELL ++GVYA +
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 577
Query: 1172 QQ 1173
Q
Sbjct: 578 MQ 579
Score = 50.7 bits (122), Expect = 2e-06
Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 17/156 (10%)
Query: 400 IIARVINLFVPIYNRLLVIIIIIIILSGWETLN---MNSLVDKPLV-----FRWDYVLIF 451
R+ P L+V I +I+ + +T + L+D L+
Sbjct: 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVV 71
Query: 452 VGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEV 511
+G L+G + + W+ + LF H+ G+ + + + TG +
Sbjct: 72 IGLMILRGITSYISSYCIS-----WVS--GKVVMTMRRRLFGHMMGMPVAFFDKQSTGTL 124
Query: 512 L-RVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVF 546
L R+ ++ +++ + L ++ I+ +
Sbjct: 125 LSRITY-DSEQVASSSSGALITVVREGASIIGLFIM 159
Score = 44.1 bits (105), Expect = 3e-04
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GE G+ LSGG++QR+AIA
Sbjct: 474 IGENGVLLSGGQRQRIAIA 492
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 374 bits (963), Expect = e-117
Identities = 156/604 (25%), Positives = 260/604 (43%), Gaps = 100/604 (16%)
Query: 592 NSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFR 651
+ F + +G F++G + W+ ++ LF
Sbjct: 54 EGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLS-----WVS--GNVVMQMRRRLFN 106
Query: 652 HLHGLSLRWHLSRKTGEVL-RVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFS 710
H + +R+ TG +L R+ ++ ++ + L I+ +I ++ + S
Sbjct: 107 HFMHMPVRFFDQESTGGLLSRITY-DSEQVAGATSRALVSIVREGA-SIIGLLTLMFWNS 164
Query: 711 TWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEE 770
+++ + V++ K R M A + + + L + V YG +E
Sbjct: 165 WQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQE 224
Query: 771 YEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQ----NLIITGGLLAGSLLCVHEVVNNQTL 826
E K + K + Q ++ LV S+ +I + L A L + + + L
Sbjct: 225 VERKRFDKVSNSM----RQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAE-L 279
Query: 827 TVGDYTLFVSYILQLYVPLNWFDALTRYLEASLV-----------PLPKKTNAKECRTIS 875
T G +T+ S + L PL ++T + + + E ++
Sbjct: 280 TPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVN 339
Query: 876 ---CICHLT---KAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQL 929
+ +T + + L + I +GK +AL
Sbjct: 340 GEVDVKDVTFTYQGKEKPALSHVSFSIP-----------QGK----------TVAL---- 374
Query: 930 VWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 989
VG+SG+GKSTI L RFYDV+SG I +D +++ +LR+ +V Q+ L
Sbjct: 375 ------VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL 428
Query: 990 FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
FN++I NI YA + E++++AA
Sbjct: 429 FNDTIANNIAYAA---------------------------------EGEYTREQIEQAAR 455
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
A E I + P G DT +GE G LSGG++QRVAIAR LL+ +++LDEATSALDT++
Sbjct: 456 QAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515
Query: 1110 ERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
ER IQ+AL+ + ++T +++AHRLSTI ADEILV+ GEI+ERGRH +LL ++G YA +
Sbjct: 516 ERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
Query: 1170 WIQQ 1173
Q
Sbjct: 576 HRIQ 579
Score = 49.9 bits (120), Expect = 4e-06
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 17/156 (10%)
Query: 400 IIARVINLFVPIYNRLLVIIIIIIILSGWETLN---MNSLVDKPLV-----FRWDYVLIF 451
R+ L+V I ++I + +T + L+D+ F +
Sbjct: 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMI 71
Query: 452 VGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEV 511
+G F++G + W+ ++ LF H + +R+ TG +
Sbjct: 72 LGLMFVRGLSGFASSYCLS-----WVS--GNVVMQMRRRLFNHFMHMPVRFFDQESTGGL 124
Query: 512 L-RVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVF 546
L R+ ++ ++ + L I+ I+ +
Sbjct: 125 LSRITY-DSEQVAGATSRALVSIVREGASIIGLLTL 159
Score = 43.7 bits (104), Expect = 4e-04
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GE G LSGG++QRVAIA
Sbjct: 474 IGENGTSLSGGQRQRVAIA 492
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein; HET:
ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 351 bits (902), Expect = e-113
Identities = 85/238 (35%), Positives = 133/238 (55%), Gaps = 33/238 (13%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
G SG GKSTI LL RFY +G+I ID Q I +S + R IG V QD+ + +I+
Sbjct: 34 AGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIR 93
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ Y + ++E++ + A
Sbjct: 94 ENLTYGL---------------------------------EGDYTDEDLWQVLDLAFARS 120
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
+ + PD +T+VGERG+K+SGG++QR+AIAR L+ P+I++LDEAT++LD+++E +Q
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
AL+ + RTT+++AHRLSTI+ AD+I + G+I G+H EL+ + +YA +Q
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
Score = 50.2 bits (121), Expect = 1e-06
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIA 590
+ NT VGERG+K+SGG++QR+AIA
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIA 151
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 340 bits (876), Expect = e-109
Identities = 97/240 (40%), Positives = 139/240 (57%), Gaps = 35/240 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 41 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 100
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI A S E+V AA A H+ F
Sbjct: 101 DNISLANPGMSVEKVIYAAKLAGAHD----F----------------------------- 127
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I +GY+T VGE+G LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I
Sbjct: 128 -ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER-NGVYASMWIQQN 1174
++++C RT II+AHRLST+ +AD I+VM G+IVE+G+H+ELL +Y+ ++ Q+
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 246
Score = 49.8 bits (120), Expect = 2e-06
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIA 590
L G NT VGE+G LSGG++QR+AIA
Sbjct: 129 SELREGYNTIVGEQGAGLSGGQRQRIAIA 157
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A
{Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 316 bits (813), Expect = e-100
Identities = 77/251 (30%), Positives = 115/251 (45%), Gaps = 35/251 (13%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +G+GKST+ LL Y G + +D + + L + V Q+ +LF S +
Sbjct: 51 VGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y + EE+ A + H+
Sbjct: 111 ENIAYGLTR---------------------------------TPTMEEITAVAMESGAHD 137
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I FP GYDT+VGE G +LSGG++Q VA+AR L++ P++++LD ATSALD + +Q
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 1116 ALNRV--CASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
L ASRT +++ +LS A IL + G + E+G H +L+ER G Y SM
Sbjct: 198 LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEAL 257
Query: 1174 NTKQSEPSSDE 1184
+
Sbjct: 258 AAPSDAAAHHH 268
Score = 48.3 bits (116), Expect = 5e-06
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIA 590
G +T VGE G +LSGG++Q VA+A
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALA 168
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane
protein, mitochondrial transport; HET: ACP LMT CDL 14Y;
2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 314 bits (806), Expect = 2e-94
Identities = 102/251 (40%), Positives = 144/251 (57%), Gaps = 33/251 (13%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG+GKST++ LL R YD SG I +D +I+ ++ LR IG V Q+ +LF+ SI
Sbjct: 376 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIA 435
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y + S + EE++ A A+
Sbjct: 436 ENIAYGADDPSS-------------------------------VTAEEIQRVAEVANAVA 464
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I +FP G++T VGE+G+ LSGG+KQR+AIAR LLK P+I+LLDEATSALD + E +Q
Sbjct: 465 FIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQE 524
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER-NGVYAS-MWIQQ 1173
AL+R+ RT +++AHRLSTI +A+ + V+ G+I E G+HEELL + NG+Y M Q
Sbjct: 525 ALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584
Query: 1174 NTKQSEPSSDE 1184
+E +
Sbjct: 585 FISAAENLYFQ 595
Score = 55.7 bits (135), Expect = 6e-08
Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 23/242 (9%)
Query: 605 YVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSR 664
L R L Q + LF + + +
Sbjct: 64 LCLGLSAVFLCGAAANAI-------RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT 116
Query: 665 KTGEVLRVMNRGTDSISNLLNYVLFQIIPTIL-DIVIAIVFFVSTFST-WY-GVIVFTTM 721
+TGE+ +NR + + LL + + + L A V F V + +
Sbjct: 117 RTGEL---INRLSSDTA-LLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVV 172
Query: 722 ALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQ 781
+ +++ + K + + + + + N TV+ +G E EI++Y +
Sbjct: 173 PPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVD 232
Query: 782 -TYQVAE---YQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSY 837
Q+A + + NLI+ L G LL + + +TVG+ + F+ Y
Sbjct: 233 HVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLL-----MGSAHMTVGELSSFLMY 287
Query: 838 IL 839
Sbjct: 288 AF 289
Score = 46.8 bits (112), Expect = 4e-05
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
VGE+G+ LSGG+KQR+AIA
Sbjct: 477 VGEKGVLLSGGQKQRIAIA 495
Score = 39.5 bits (93), Expect = 0.006
Identities = 29/208 (13%), Positives = 71/208 (34%), Gaps = 41/208 (19%)
Query: 369 AAKKIKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGW 428
+ + L +P++ ++ + L ++ VI++ P + + I ++
Sbjct: 3 GLPEARKLLGLAYPER-----RRLAAAVGFLTMSSVISMSAPFFLGKI-----IDVIYTN 52
Query: 429 ETLNMNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIE 488
T++ + + + L R L Q +
Sbjct: 53 PTVDYSDNLTR-------LCLGLSAVFLCGAAANAI-------RVYLMQTSGQRIVNRLR 98
Query: 489 IELFRHLHGLSLRWHLSRKTGEVL-------RVMNRG-TDSISNLLNYV---------LF 531
LF + + + +TGE++ ++ R T+++S+ L +F
Sbjct: 99 TSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMF 158
Query: 532 QIIPTILDIVIAIVFFVSTFSTWYGVIV 559
+ P + V+++V VS + YG +
Sbjct: 159 FVSPNLATFVLSVVPPVSIIAVIYGRYL 186
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 321 bits (825), Expect = 7e-92
Identities = 104/250 (41%), Positives = 151/250 (60%), Gaps = 33/250 (13%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG GKST+++LL RFYD +G +F+D + IK ++ LR +G+V Q+ +LF+ SI
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y + S EE+ AA A+IH+
Sbjct: 1125 ENIAYGDNSR--------------------------------VVSYEEIVRAAKEANIHQ 1152
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I S PD Y+T+VG++G +LSGG+KQR+AIAR L++ P I+LLDEATSALDT++E+ +Q
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMW-IQQN 1174
AL++ RT I++AHRLSTI +AD I+V+ G++ E G H++LL + G+Y SM +Q
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272
Query: 1175 TKQSEPSSDE 1184
K+S
Sbjct: 1273 AKRSYVHHHH 1282
Score = 315 bits (810), Expect = 7e-90
Identities = 101/256 (39%), Positives = 149/256 (58%), Gaps = 34/256 (13%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG SG GKST ++L+ R YD G + ID Q+I+T++ LR+ IGVV Q+ VLF +I
Sbjct: 422 VGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA 481
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI+Y R + + +E+++A A+ ++ F
Sbjct: 482 ENIRYGREDVTMDEIEKAVKEANAYD----F----------------------------- 508
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I+ P +DT VGERG +LSGG+KQR+AIAR L++ P+I+LLDEATSALDT++E +Q+
Sbjct: 509 -IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQNT 1175
AL++ RTTI++AHRLST+ +AD I G IVE+G H+EL+ G+Y + + Q
Sbjct: 568 ALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTA 627
Query: 1176 KQSEPSSDESPPSSTA 1191
+E+ S
Sbjct: 628 GNEIELGNEACKSKDE 643
Score = 51.6 bits (124), Expect = 2e-06
Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 21/242 (8%)
Query: 605 YVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLS- 663
+ L+F+ + G + T+ + +F+ + + W
Sbjct: 751 FSLLFLILGIISFITFFLQGFTFGKAG-------EILTKRLRYMVFKSMLRQDVSWFDDP 803
Query: 664 -RKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTW-YGVIVFTTM 721
TG + + + L I I ++ I+ +S W +++ +
Sbjct: 804 KNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGII--ISLIYGWQLTLLLLAIV 861
Query: 722 ALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQ 781
+ + +V + + K + +++ NF TV E+ Y +++Q
Sbjct: 862 PIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQ 921
Query: 782 TYQVAEYQ----NSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSY 837
+ ++ F ++ G+ L V Q +T + L S
Sbjct: 922 IPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYL-----VTQQLMTFENVLLVFSA 976
Query: 838 IL 839
I+
Sbjct: 977 IV 978
Score = 50.4 bits (121), Expect = 4e-06
Identities = 31/241 (12%), Positives = 81/241 (33%), Gaps = 15/241 (6%)
Query: 605 YVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSR 664
Y + G G+ ++ ++ W +I + F + + W
Sbjct: 110 YAYYYTGI-------GAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH 162
Query: 665 KTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTW-YGVIVFTTMAL 723
GE+ + I+ + + + + + W +++ +
Sbjct: 163 DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFI--IGFTRGWKLTLVILAISPV 220
Query: 724 YLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTY 783
+++ + + + F K A + + L TV +G ++ E++ Y ++
Sbjct: 221 LGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEA 280
Query: 784 QVAEYQNSLSLVFLNSLQNLIITGGL-LA---GSLLCVHEVVN-NQTLTVGDYTLFVSYI 838
+ + +++ L+I LA G+ L + + + Q LTV L ++
Sbjct: 281 KRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFS 340
Query: 839 L 839
+
Sbjct: 341 V 341
Score = 46.6 bits (111), Expect = 5e-05
Identities = 18/29 (62%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIA 590
M L +T VGERG +LSGG+KQR+AIA
Sbjct: 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIA 538
Score = 44.6 bits (106), Expect = 2e-04
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 563 MALYLGKNT-VGERGLKLSGGEKQRVAIA 590
+L NT VG++G +LSGG+KQR+AIA
Sbjct: 1155 DSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183
Score = 34.6 bits (80), Expect = 0.26
Identities = 14/150 (9%), Positives = 40/150 (26%), Gaps = 14/150 (9%)
Query: 396 ILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLNMNSLVDKPLVFRWDYVLIFVGFK 455
+++LI + + F + N + + + Y + G
Sbjct: 66 LMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTT-------YAYYYTGI- 117
Query: 456 FLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVM 515
G+ ++ ++ W +I + F + + W GE+ +
Sbjct: 118 ------GAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRL 171
Query: 516 NRGTDSISNLLNYVLFQIIPTILDIVIAIV 545
I+ + + + +
Sbjct: 172 TDDVSKINEGIGDKIGMFFQAMATFFGGFI 201
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug
transporter, transport protein; HET: ANP; 2.90A
{Thermotoga maritima}
Length = 598
Score = 280 bits (720), Expect = 2e-82
Identities = 95/238 (39%), Positives = 148/238 (62%), Gaps = 34/238 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VG +G+GK+TI+ LL RFYDV+ G I +D +I+ + ++SLR +IG+V QDT+LF+ ++K
Sbjct: 387 VGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVK 446
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N++Y A++EE+KEAA F
Sbjct: 447 ENLKYGNPGATDEEIKEAAKLTHSDH----F----------------------------- 473
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I P+GY+T + + G LS G++Q +AI R L P+I++LDEATS +DTKTE++IQ+
Sbjct: 474 -IKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
A+ ++ +T+II+AHRL+TI +AD I+V+ GEIVE G+H+EL+++ G Y ++ Q
Sbjct: 533 AMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
Score = 78.0 bits (193), Expect = 8e-15
Identities = 41/238 (17%), Positives = 91/238 (38%), Gaps = 32/238 (13%)
Query: 624 GVLNNVRSLLWIGVQQYTTREIEIELFRHLHGLSLRWHLSRKTGEVL-RVMNRGTDSISN 682
+L ++ + + + Q + ELF L + + + G+++ RV+N D+I+N
Sbjct: 91 SLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVIN-DVDNINN 149
Query: 683 LLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKM 742
+L + Q I+ + A++ + ++ + + L ++++T+ + RK
Sbjct: 150 VLGNSIIQFFSGIVTLAGAVIMMFRV-NVILSLVTLSIVPL----TVLITQIVSSQTRKY 204
Query: 743 ------NLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAIQTYQVAEYQNSLSLVF 796
L LN + + +K + EE E++++ + ++ +
Sbjct: 205 FYENQRVLGQ--LNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESL----RKVGTKAQI 258
Query: 797 LNSL--------QNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQLYVPLN 846
+ + NL G L + +TVG F+ Y Q PLN
Sbjct: 259 FSGVLPPLMNMVNNLGFALISGFGGWLAL-----KDIITVGTIATFIGYSRQFTRPLN 311
Score = 61.8 bits (151), Expect = 9e-10
Identities = 28/194 (14%), Positives = 69/194 (35%), Gaps = 30/194 (15%)
Query: 373 IKTLAPFLWPKKSALLKLQVIICILLLIIARVINLFVPIYNRLLVIIIIIIILSGWETLN 432
++ L +L P +I+ + + ++ ++ + P + ++ +
Sbjct: 25 LRRLLGYLRPHT-----FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR-------R 72
Query: 433 MNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELF 492
+ L Y+LI L G + + Q + ELF
Sbjct: 73 FDLL--------PRYMLILGTIYALTSLLFWLQGKIML-------TLSQDVVFRLRKELF 117
Query: 493 RHLHGLSLRWHLSRKTGEVL-RVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTF 551
L + + + G+++ RV+N D+I+N+L + Q I+ + A++
Sbjct: 118 EKLQRVPVGFFDRTPHGDIISRVIN-DVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRV- 175
Query: 552 STWYGVIVFTTMAL 565
+ ++ + + L
Sbjct: 176 NVILSLVTLSIVPL 189
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 248 bits (636), Expect = 3e-71
Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 34/231 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G++G+GKST++ L+ R D E G + +D +++TV LR I VPQ+TVLF+ +IK
Sbjct: 375 LGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIK 434
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+++ R +A+++E+ EAA A IH+ F
Sbjct: 435 ENLKWGREDATDDEIVEAAKIAQIHD----F----------------------------- 461
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I+S P+GYD++V G SGG+KQR++IAR L+K P++++LD+ TS++D TE+ I
Sbjct: 462 -IISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVY 1166
L R TT I+ ++ T + AD+ILV+H G++ G H+ELLE Y
Sbjct: 521 GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPY 571
Score = 44.5 bits (106), Expect = 2e-04
Identities = 52/256 (20%), Positives = 101/256 (39%), Gaps = 33/256 (12%)
Query: 596 DKPLVFRWDYVLIFVGFKFLQGGGTGG-------MGVLNNVRSLLWIGVQQYTTREIEIE 648
D LV + +++ V GG ++R L+ V ++ +
Sbjct: 58 DFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVN-- 115
Query: 649 LFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVST 708
H SL ++R T +V ++ N L+ +L ++ L V IV VS
Sbjct: 116 ---RFHTSSL---ITRLTNDVTQLQN--------LVMMLLRIVVRAPLLFVGGIVMAVSI 161
Query: 709 FSTWYGVIVFTTMALYLVTSIVVTEWRTKFQRKMNLADNALNTRSIDSLLNFETVKYYGA 768
V++F + L+ + + F++ D +N ++LL V+ +
Sbjct: 162 NVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDE-VNRVVRENLLGVRVVRAFRR 220
Query: 769 EEYEIKEYGKAIQTYQVAEYQNSLSLVFLNSLQNLIITGGLLA----GSLLCVHEVVNNQ 824
EEYE + + KA ++ + + +VF L I+ G++A G +L V N
Sbjct: 221 EEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVL-----VRNN 275
Query: 825 TLTVGDYTLFVSYILQ 840
+ +G + +Y++Q
Sbjct: 276 QMEIGSIMAYTNYLMQ 291
Score = 33.7 bits (78), Expect = 0.43
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 572 VGERGLKLSGGEKQRVAIALNSLVDKP--LVF 601
V G SGG+KQR++IA +LV KP L+
Sbjct: 473 VERGGRNFSGGQKQRLSIA-RALVKKPKVLIL 503
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 198 bits (504), Expect = 1e-55
Identities = 59/258 (22%), Positives = 110/258 (42%), Gaps = 37/258 (14%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+G++G+GKST++ R + E G+I ID + +++ R+A GV+PQ +F+ + +
Sbjct: 53 LGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFR 111
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
N+ D + S++E+ + A +
Sbjct: 112 KNL-----------------------------DPNA-AH-----SDQEIWKVADEVGLRS 136
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
I FP D + + G LS G KQ + +AR++L +I+LLDE ++ LD T + I+
Sbjct: 137 VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196
Query: 1116 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER-NGVYASMWIQQN 1174
L + A T I+ R+ ++ D+ LV+ ++ + EL + + +I
Sbjct: 197 TLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSP 256
Query: 1175 TKQSEPSSDESPPSSTAQ 1192
P + Q
Sbjct: 257 KMNFLPVKVTATAIDQVQ 274
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 122 bits (308), Expect = 8e-31
Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 52/252 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
G +GAGK++++ ++ + G I I Q++ + +IK
Sbjct: 70 AGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSGRISFCSQNSWIMPGTIK 116
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQ-YARINASEEEVKEAATSADIH 1054
NI + YD Y + +K DI
Sbjct: 117 ENI-------------------------IGVS--YDEYRYRSV------IKACQLEEDIS 143
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI- 1113
F + + +GE G+ LSGG++ R+++AR + K + LLD LD TE+ I
Sbjct: 144 ----KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 199
Query: 1114 QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASMWIQQ 1173
+S + ++ A++T I+V ++ + AD+IL++H G G EL ++S +
Sbjct: 200 ESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGC 259
Query: 1174 NTKQSEPSSDES 1185
++ + +
Sbjct: 260 DSFDQFSAERRN 271
Score = 40.0 bits (94), Expect = 0.003
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GE G+ LSGG++ R+++A
Sbjct: 153 LGEGGITLSGGQRARISLA 171
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Length = 229
Score = 118 bits (297), Expect = 6e-30
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 51/236 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
G +GAGK++++ ++ + G I I Q + + +IK
Sbjct: 40 AGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSGRISFCSQFSWIMPGTIK 86
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQ-YARINASEEEVKEAATSADIH 1054
NI F YD Y + +K DI
Sbjct: 87 ENI--------------------------IFGVSYDEYRYRSV------IKACQLEEDIS 114
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI- 1113
F + + +GE G+ LSGG++ R+++AR + K + LLD LD TE+ I
Sbjct: 115 ----KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 170
Query: 1114 QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYASM 1169
+S + ++ A++T I+V ++ + AD+IL++H G G EL ++S
Sbjct: 171 ESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226
Score = 39.5 bits (93), Expect = 0.003
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GE G+ LSGG++ R+++A
Sbjct: 124 LGEGGITLSGGQRARISLA 142
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1,
nucleotide-binding domain, ATP- binding, hydrolysis,
transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 113 bits (284), Expect = 4e-28
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 62/252 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
VGQ G GKS+++ L D G + +++ ++ VPQ + N+S++
Sbjct: 37 VGQVGCGKSSLLSALLAEMDKVEGHV-------------AIKGSVAYVPQQAWIQNDSLR 83
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQ-YARINASEEEVKEAATSADIH 1054
NI F + Y + ++ A D+
Sbjct: 84 ENI--------------------------LFGCQLEEPYYRSV------IQACALLPDLE 111
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI- 1113
P G T++GE+G+ LSGG+KQRV++AR + I L D+ SA+D ++I
Sbjct: 112 ----ILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 1114 ------QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLERNGVYA 1167
+ L ++T I+V H +S + D I+VM G+I E G ++ELL R+G +A
Sbjct: 168 ENVIGPKGML----KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFA 223
Query: 1168 SMWIQQNTKQSE 1179
++
Sbjct: 224 EF-LRTYASHHH 234
Score = 40.2 bits (95), Expect = 0.002
Identities = 12/19 (63%), Positives = 18/19 (94%)
Query: 572 VGERGLKLSGGEKQRVAIA 590
+GE+G+ LSGG+KQRV++A
Sbjct: 121 IGEKGVNLSGGQKQRVSLA 139
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB:
3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 110 bits (276), Expect = 6e-26
Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 60/238 (25%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQ------- 985
+G SGAGKST+IR + G + +D Q + T+S++ L +A IG++ Q
Sbjct: 60 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 119
Query: 986 DTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
TV N + ++ E + R V
Sbjct: 120 RTVFGN--VALPLELDNTPKDE-----------VKRR---------------------VT 145
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
E + + ++ S+P LSGG+KQRVAIAR L P+++L D+ATSAL
Sbjct: 146 ELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
Query: 1106 DTKTERNIQSALNRVCASR--TTIIVAHRLSTI--IHADEILVMHAGEIVERGRHEEL 1159
D T R+I L + T +++ H + + I D + V+ GE++E+ E+
Sbjct: 195 DPATTRSILELLKDINRRLGLTILLITHEMDVVKRI-CDCVAVISNGELIEQDTVSEV 251
Score = 34.2 bits (79), Expect = 0.21
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 579 LSGGEKQRVAIA 590
LSGG+KQRVAIA
Sbjct: 164 LSGGQKQRVAIA 175
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 105 bits (265), Expect = 2e-25
Identities = 37/234 (15%), Positives = 72/234 (30%), Gaps = 58/234 (24%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ--DTVLFNNS 993
+G +G+GK+T++R + SG+IFI+ ++ +R I + +
Sbjct: 36 LGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVR-----KIRNYIRYSTNLPEAYEIGVT 89
Query: 994 IKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+ + + E + L + +
Sbjct: 90 VNDIVYLYEELKGLDRDLFLEML-------KALKLGEEILRRK----------------- 125
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
+++ LS G+ V + L P+IV LDE +D
Sbjct: 126 -LYK-------------------LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165
Query: 1112 NIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVER-GRHEELLERN 1163
I + + I+V H L + + G ++ ELLE +
Sbjct: 166 VISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
Score = 33.5 bits (77), Expect = 0.30
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LS G+ V +L +L +P +
Sbjct: 129 LSAGQSVLVRTSL-ALASQPEIV 150
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 106 bits (266), Expect = 3e-25
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 40/236 (16%)
Query: 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQASLRQAIGVVPQDTV 988
W L G +GAGK+T++ +L + SG + + + V S ++RQ IG V
Sbjct: 50 WILY--GLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHS-- 105
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
++ E V + S + I + D D +
Sbjct: 106 -------LLEKFQE----GERVIDVVISG-AFKSIGVYQDIDDEIRNE-------AHQLL 146
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
+ + +G LS GEKQRV IAR L+ PQ+++LDE + LD
Sbjct: 147 KLVGMSAKA-------QQYIGY----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI 195
Query: 1109 TERNIQSALNRVCASRTT---IIVAHRLSTII-HADEILVMHAGEIVERGRHEELL 1160
++ S L+ + S T I V H + I + +IL++ G+ +++G E++L
Sbjct: 196 ARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
Score = 29.9 bits (68), Expect = 5.4
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 579 LSGGEKQRVAIA 590
LS GEKQRV IA
Sbjct: 162 LSTGEKQRVMIA 173
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 101 bits (254), Expect = 8e-24
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 56/244 (22%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIGVVPQ--DTVLFN 991
+G +G GKST+ + SG I DN+ I + LR++IG+V Q D LF+
Sbjct: 40 LGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99
Query: 992 NSIKFNIQYARINA--SEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
S+ ++ + +N E+E+ + V A
Sbjct: 100 ASVYQDVSFGAVNMKLPEDEI------------------------------RKRVDNALK 129
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
I LS G+K+RVAIA L+ P++++LDE T+ LD
Sbjct: 130 RTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 1110 ERNIQSALNRVCASR--TTIIVAHRLSTI-IHADEILVMHAGEIVERG------RHEELL 1160
I L + T II H + + ++ D + VM G ++ +G +E++
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVI 238
Query: 1161 ERNG 1164
+
Sbjct: 239 RKVN 242
Score = 35.2 bits (82), Expect = 0.11
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 578 KLSGGEKQRVAIA 590
LS G+K+RVAIA
Sbjct: 143 CLSFGQKKRVAIA 155
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport,
TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 98.8 bits (247), Expect = 6e-23
Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 49/233 (21%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ--DTVLFNNS 993
G +G+GKST+++++ + SGD+ D + K +R+ IG+ Q + F
Sbjct: 39 AGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---YEIRRNIGIAFQYPEDQFFAER 95
Query: 994 IKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
+ + +A N + V + + + + K+
Sbjct: 96 VFDEVAFAVKNFYPDRDPVPLVKKAME-----------------FVGLDFDSFKDRVP-- 136
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 1111
LSGGEK+RVAIA ++ P I++LDE LD + +
Sbjct: 137 --FF-------------------LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175
Query: 1112 NIQSALNRVCASRTTII-VAHRLSTII-HADEILVMHAGEIVERGRHEELLER 1162
++ + + T+I ++H + T+I H D ++V+ G+ V G E LE+
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Score = 35.6 bits (83), Expect = 0.065
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 578 KLSGGEKQRVAIA 590
LSGGEK+RVAIA
Sbjct: 138 FLSGGEKRRVAIA 150
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP;
NMR {Saccharomyces cerevisiae}
Length = 608
Score = 102 bits (256), Expect = 2e-22
Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 50/230 (21%)
Query: 936 VGQSGAGKSTIIRLL--------FRFYDVESGDIFIDN---QNIKTVSQASLRQAIGVVP 984
VG +G GKST +++L RF D I ++ L I +
Sbjct: 109 VGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168
Query: 985 QDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEV 1044
+ + N A + V++ + S E+V
Sbjct: 169 KPQYVDNIPR----------AIKGPVQKVGELLKLRME----------------KSPEDV 202
Query: 1045 KEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
K + + + KLSGGE QR AI + ++ + + DE +S
Sbjct: 203 KRYIKILQLENVLKRDIE-----------KLSGGELQRFAIGMSCVQEADVYMFDEPSSY 251
Query: 1105 LDTKTERNIQSALNRVCASRTTIIVA-HRLSTIIH-ADEILVMHAGEIVE 1152
LD K N + + A +I H LS + + +D + +++ V
Sbjct: 252 LDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
Score = 102 bits (256), Expect = 2e-22
Identities = 45/222 (20%), Positives = 74/222 (33%), Gaps = 62/222 (27%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNS 993
+G++G GK+T+I+LL + G I ++ + Q I TV LF
Sbjct: 384 MGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLF--- 434
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
++++ + ++
Sbjct: 435 -------------FKKIRGQFLNPQFQTDVV----------------------------- 452
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ L D D +V LSGGE QRVAI L I L+DE ++ LD++
Sbjct: 453 --KPLRIDDIIDQEVQH----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506
Query: 1114 QSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVE 1152
+ R T IV H + AD+++V
Sbjct: 507 SKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN 548
Score = 37.3 bits (87), Expect = 0.036
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 578 KLSGGEKQRVAIALNSLVDKP--LVF 601
KLSGGE QR AI + S V + +F
Sbjct: 221 KLSGGELQRFAIGM-SCVQEADVYMF 245
Score = 36.5 bits (85), Expect = 0.054
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 579 LSGGEKQRVAIAL 591
LSGGE QRVAI L
Sbjct: 468 LSGGELQRVAIVL 480
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster,
adenosine diphosphate, nucleotide-binding; HET: ADP;
2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 102 bits (256), Expect = 2e-22
Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 55/242 (22%)
Query: 936 VGQSGAGKSTIIRLL-----FRFYDVE-SGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 989
VG +G GK+T +++L + S D I Q + L
Sbjct: 123 VGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE-LQNYFER----------L 171
Query: 990 FNNSIKFNIQYARINASEE----EVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
N I+ ++ ++ + +V+E D + +
Sbjct: 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKF---------------------E 210
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
E ++ D ++ + LSGGE QRVAIA LL+ DE +S L
Sbjct: 211 EVVKELELENV-------LDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSSYL 259
Query: 1106 DTKTERNIQSALNRVCASRTTIIVA-HRLSTIIH-ADEILVMHAGEIVERGRHEELLERN 1163
D + + + R+ ++V H L+ + + +D I V++ V + RN
Sbjct: 260 DIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN 319
Query: 1164 GV 1165
G+
Sbjct: 320 GI 321
Score = 102 bits (256), Expect = 2e-22
Identities = 53/225 (23%), Positives = 82/225 (36%), Gaps = 63/225 (28%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNS 993
VG +G GK+T +++L + G + D + + Q I + TV L
Sbjct: 388 VGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYK---PQYIKAEYEGTVYELL--- 438
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
+ S +L
Sbjct: 439 -------------SKIDSSKLNSNFYKTELL----------------------------- 456
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ L D YD V + LSGGE QRVAIA TLL+ I LLDE ++ LD + +
Sbjct: 457 --KPLGIIDLYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 1114 QSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGR 1155
A+ + +T ++V H + I + +D ++V GE GR
Sbjct: 511 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHGR 554
Score = 36.9 bits (86), Expect = 0.042
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 578 KLSGGEKQRVAIAL 591
LSGGE QRVAIA
Sbjct: 471 DLSGGELQRVAIAA 484
Score = 36.5 bits (85), Expect = 0.057
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 578 KLSGGEKQRVAIALNSLVDKP--LVF 601
+LSGGE QRVAIA +L+ K F
Sbjct: 228 QLSGGELQRVAIAA-ALLRKAHFYFF 252
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 101 bits (253), Expect = 4e-22
Identities = 55/225 (24%), Positives = 83/225 (36%), Gaps = 63/225 (28%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNS 993
VG +G GK+T +++L + G I D + + Q I + TV L
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEPTEGKIEWD---LTVAYK---PQYIKADYEGTVYELL--- 368
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
+ S +L
Sbjct: 369 -------------SKIDASKLNSNFYKTELL----------------------------- 386
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
+ L D YD +V E LSGGE QRVAIA TLL+ I LLDE ++ LD + +
Sbjct: 387 --KPLGIIDLYDREVNE----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440
Query: 1114 QSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGR 1155
A+ + T ++V H + I + +D ++V GE + GR
Sbjct: 441 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-GEPGKYGR 484
Score = 93.1 bits (232), Expect = 1e-19
Identities = 51/235 (21%), Positives = 83/235 (35%), Gaps = 58/235 (24%)
Query: 933 LLQVGQSGAGKSTIIRLLF-----RFYDVE-SGDIFIDNQNIKTVS---QASLRQAIGVV 983
+ VG +G GKST +++L S D I + + I V
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109
Query: 984 PQDTVLFNNSIKFNIQYARIN--ASEEEVKEAATSADIHERILSFPDGYDTQYARINASE 1041
+ QY + A + +V E AD +
Sbjct: 110 VKP------------QYVDLIPKAVKGKVIELLKKADETGK------------------- 138
Query: 1042 EEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEA 1101
++E + ++ + LSGGE QRVAIA LL+ DE
Sbjct: 139 --LEEVVKALELENVLEREIQ-----------HLSGGELQRVAIAAALLRNATFYFFDEP 185
Query: 1102 TSALDTKTERNIQSALNRVCASRTTIIVA-HRLSTIIH-ADEILVMHAGEIVERG 1154
+S LD + N A+ R+ +++V H L+ + + +D I V++ GE G
Sbjct: 186 SSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYG 239
Score = 36.1 bits (84), Expect = 0.069
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 579 LSGGEKQRVAIALNSLVDKP 598
LSGGE QRVAIA +L+
Sbjct: 402 LSGGELQRVAIAA-TLLRDA 420
Score = 35.7 bits (83), Expect = 0.095
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 578 KLSGGEKQRVAIA 590
LSGGE QRVAIA
Sbjct: 158 HLSGGELQRVAIA 170
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 94.1 bits (235), Expect = 8e-22
Identities = 36/221 (16%), Positives = 84/221 (38%), Gaps = 51/221 (23%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIK 995
G +G GK+T+++ + + G+I + I V + I +P++ ++ S++
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKIFFLPEEIIVPRKISVE 96
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
++ A ++ + ++ E+ +A S ++ +
Sbjct: 97 DYLKA---------------VASLY---------------GVKVNKNEIMDALESVEVLD 126
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
++GE LS G +RV +A TLL +I +LD+ A+D ++ +
Sbjct: 127 L--------KKKLGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 174
Query: 1116 ALNRVCASR-TTIIVAHRLSTIIHADEILVMHAGEIVERGR 1155
++ + + II + + D +H +
Sbjct: 175 SILEILKEKGIVIISSREELSY--CDVNENLHKYSTKIDKK 213
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 99.7 bits (249), Expect = 1e-21
Identities = 53/235 (22%), Positives = 84/235 (35%), Gaps = 62/235 (26%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNS 993
+G +G GK+T R+L + G + + Q + Q I TV N+
Sbjct: 300 LGPNGIGKTTFARILVGEITADEGSVTPEKQILS-----YKPQRIFPNYDGTVQQYLENA 354
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADI 1053
K ++ S +E ++H + E V +
Sbjct: 355 SK-----DALSTSSWFFEEVTKRLNLHRLL-----------------ESNVND------- 385
Query: 1054 HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 1113
LSGGE Q++ IA TL K + +LD+ +S LD + +
Sbjct: 386 ---------------------LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424
Query: 1114 QSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIVERGR-HEELLERNG 1164
A+ RV R T I+ H LS + AD I+V GE + G + + G
Sbjct: 425 AKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK-GEPEKAGLATSPVTLKTG 478
Score = 97.4 bits (243), Expect = 6e-21
Identities = 43/238 (18%), Positives = 85/238 (35%), Gaps = 48/238 (20%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFID--NQNIKTVSQASLRQ----AIGVVPQD--T 987
+G++G GK+T++++L +G+I + + N K L++ I ++ +
Sbjct: 31 LGKNGVGKTTVLKIL-------AGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 988 VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEA 1047
K + V E T D + E
Sbjct: 84 NELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK-------------DEVKELLNMTN 130
Query: 1048 ATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 1107
+ D + LSGG QR+ +A +LL+ + + D+ +S LD
Sbjct: 131 LWNKDANI-------------------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDV 171
Query: 1108 KTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERNG 1164
+ N+ A+ + ++ I+V H L + + D I +++ V + R G
Sbjct: 172 RERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVG 229
Score = 36.2 bits (84), Expect = 0.076
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 578 KLSGGEKQRVAIALNSLVDKP 598
LSGGE Q++ IA +L +
Sbjct: 385 DLSGGELQKLYIAA-TLAKEA 404
Score = 36.2 bits (84), Expect = 0.079
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 578 KLSGGEKQRVAIALNSLVDKP--LVF 601
LSGG QR+ +A SL+ + +F
Sbjct: 138 ILSGGGLQRLLVAA-SLLREADVYIF 162
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 94.5 bits (236), Expect = 1e-21
Identities = 68/232 (29%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIK 995
G +GAGKS + L+ + G++ ++ +I + R+ IG VPQD LF + S+
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL--PPERRGIGFVPQDYALFPHLSVY 88
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
NI Y N E V+E A I
Sbjct: 89 RNIAYGLRNVERVERDR------------------------------RVREMAEKLGIAH 118
Query: 1056 RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 1115
D + LSGGE+QRVA+AR L+ P+++LLDE SA+D KT+ +
Sbjct: 119 ----LLDRKPAR-------LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167
Query: 1116 ALNRVCASR--TTIIVAHRLS---TIIHADEILVMHAGEIVERGRHEELLER 1162
L V + V H L + ADE+ VM G IVE+G+ +EL
Sbjct: 168 ELRFVQREFDVPILHVTHDLIEAAML--ADEVAVMLNGRIVEKGKLKELFSA 217
Score = 34.4 bits (80), Expect = 0.14
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSGGE+QRVA+A +LV +P +
Sbjct: 127 LSGGERQRVALA-RALVIQPRLL 148
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP;
2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 95.0 bits (237), Expect = 1e-21
Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 57/238 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTVLFNN- 992
+G SG+GKST +R L D + G+I ID N+ K + +R+ +G+V Q LF +
Sbjct: 56 IGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM 115
Query: 993 SIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
++ NI A + + ++A A +L ++V
Sbjct: 116 TVLNNITLAPMKVRKWPREKAEAKA---MELL-----------------DKVG------- 148
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 1112
+ ++ ++PD LSGG+ QRVAIAR L P+I+L DE TSALD +
Sbjct: 149 LKDKAHAYPD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM--- 194
Query: 1113 IQSALN--RVCASR--TTIIVAH-----RLSTIIHADEILVMHAGEIVERGRHEELLE 1161
+ L+ + A+ T ++V H R D +L M G I+E G+ E+L +
Sbjct: 195 VGEVLSVMKQLANEGMTMVVVTHEMGFAREV----GDRVLFMDGGYIIEEGKPEDLFD 248
Score = 33.7 bits (78), Expect = 0.28
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 578 KLSGGEKQRVAIA 590
LSGG+ QRVAIA
Sbjct: 159 SLSGGQAQRVAIA 171
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Length = 224
Score = 91.4 bits (228), Expect = 9e-21
Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 59/230 (25%)
Query: 936 VGQSGAGKST---IIRLLFRFYDV-ESGDIFIDNQNIKTVSQ---ASLR-QAIGVVPQDT 987
+G SG+GKST I+ LL D G +F++ + + ++ + LR + +G V Q
Sbjct: 36 IGASGSGKSTLLYILGLL----DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQ-- 89
Query: 988 VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASE--EEVK 1045
+ + A E V E E +
Sbjct: 90 -------FHYL-IPELTA-LENVIVPML------------------KMGKPKKEAKERGE 122
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
+ + +++ P +LSGGE+QRVAIAR L P ++ DE T L
Sbjct: 123 YLLSELGLGDKLSRKPY-----------ELSGGEQQRVAIARALANEPILLFADEPTGNL 171
Query: 1106 DTKTERNIQ---SALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVE 1152
D+ + + +N + ++V H L M G++V
Sbjct: 172 DSANTKRVMDIFLKINE--GGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
Score = 36.3 bits (85), Expect = 0.032
Identities = 13/22 (59%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLV 600
LSGGE+QRVAIA +L ++P++
Sbjct: 141 LSGGEQQRVAIA-RALANEPIL 161
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 92.2 bits (230), Expect = 9e-21
Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 63/238 (26%)
Query: 940 GAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKFNIQ 999
GAGK+T +R++ SG + + +N+ +R+ I +P++
Sbjct: 51 GAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGA---------- 99
Query: 1000 YARINASEEEVKEAATSADIHERILSFPDGYDTQYARI-----NASEEEVKEAATSADIH 1054
Y + E L F A + EE V+ A A +
Sbjct: 100 YRNMQGIEY---------------LRF-------VAGFYASSSSEIEEMVERATEIAGLG 137
Query: 1055 ERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
E+I +V S G +++ IAR L+ P++ +LDE TS LD R ++
Sbjct: 138 EKI-------KDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 1115 SALNRVCASRTTIIVAHRLSTIIH--------ADEILVMHAGEIVERGRHEELLERNG 1164
L + TI+ +S+ H D I ++H G IVE G EEL ER
Sbjct: 187 KILKQASQEGLTIL----VSS--HNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 238
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding
domain, ABC transporter ATPase; HET: ADP; 1.80A
{Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 88.8 bits (221), Expect = 9e-20
Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 54/240 (22%)
Query: 936 VGQSGAGKST---IIRLLFRFYDV-ESGDIFIDNQNIKTVSQ---ASLR-QAIGVVPQDT 987
+G SG+GKST II L D G+++IDN + +R IG V Q
Sbjct: 37 MGPSGSGKSTMLNIIGCL----DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ-- 90
Query: 988 VLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASE--EEVK 1045
+FN+ + A E V P + + ++ E +
Sbjct: 91 -------QFNL-IPLLTA-LENV--------------ELPLIFKYR-GAMSGEERRKRAL 126
Query: 1046 EAATSADIHERILSF-PDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSA 1104
E A++ ER + P+ +LSGG++QRVAIAR L P I+L D+ T A
Sbjct: 127 ECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILADQPTWA 175
Query: 1105 LDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIHADEILVMHAGEIVERGRHEELLER 1162
LD+KT I L ++ +T ++V H ++ + I+ + GE+ + +R
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDDR 235
Score = 35.6 bits (83), Expect = 0.068
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLV 600
LSGG++QRVAIA +L + P +
Sbjct: 146 LSGGQQQRVAIA-RALANNPPI 166
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding,
nucleotide-binding, membrane, transmembrane, transport
protein; 3.00A {Methanosarcina acetivorans} SCOP:
b.40.6.3 c.37.1.12
Length = 348
Score = 88.4 bits (220), Expect = 8e-19
Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 70/241 (29%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIK 995
G +GAGK+ + L+ F+ +SG I +D +++ +S I V Q+ LF + ++K
Sbjct: 33 GPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKHD-IAFVYQNYSLFPHMNVK 90
Query: 996 FNIQY---ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
N+++ + + V + A ++
Sbjct: 91 KNLEFGMRMKKIKDPKRVLDTA---------------------------RDL-------- 115
Query: 1053 IHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT--- 1109
+I D LSGGE+QRVA+AR L+ P+I+LLDE SALD +T
Sbjct: 116 ---KIEHLLDRNPLT-------LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 1110 ---E-RNIQSALNRVCASRTTIIVAH----RLSTIIHADEILVMHAGEIVERGRHEELLE 1161
+ T + + H AD I V+ G++++ G+ EE+ E
Sbjct: 166 AREMLSVLHKKNK-----LTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEIFE 217
Query: 1162 R 1162
+
Sbjct: 218 K 218
Score = 35.2 bits (82), Expect = 0.11
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLV 600
LSGGE+QRVA+A +LV P +
Sbjct: 128 LSGGEQQRVALA-RALVTNPKI 148
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 84.9 bits (211), Expect = 3e-18
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 65/248 (26%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-------------LRQAIGV 982
+G SG+GKST +R + G I ++ QNI V LR + +
Sbjct: 38 IGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTM 97
Query: 983 VPQDTVLFNN-SIKFNIQYARINASEEEVKEAATSADIHERILS---FPDGYDTQYARIN 1038
V Q L+++ ++ N+ A I +A A + L+ + +Y
Sbjct: 98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA---LKYLAKVGIDERAQGKY---- 150
Query: 1039 ASEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLL 1098
P LSGG++QRV+IAR L P ++L
Sbjct: 151 ----------------------PV-----------HLSGGQQQRVSIARALAMEPDVLLF 177
Query: 1099 DEATSALDTKTERNIQSALN--RVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVER 1153
DE TSALD + + L + A +T ++V H + H + ++ +H G+I E
Sbjct: 178 DEPTSALDPEL---VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234
Query: 1154 GRHEELLE 1161
G E++
Sbjct: 235 GDPEQVFG 242
Score = 34.1 bits (79), Expect = 0.20
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 578 KLSGGEKQRVAIA 590
LSGG++QRV+IA
Sbjct: 153 HLSGGQQQRVSIA 165
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 85.7 bits (213), Expect = 7e-18
Identities = 56/248 (22%), Positives = 95/248 (38%), Gaps = 75/248 (30%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQD------ 986
+G SG GK+T++R L F +SG+I + + I + + R+ +G + Q+
Sbjct: 36 IGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR-LGYLVQEGVLFPH 94
Query: 987 -TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
TV N I + + + ++ +R ++
Sbjct: 95 LTVYRN--IAYGLGNGKGRTAQ-----------ERQR---------------------IE 120
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
I E +P +LSGG++QR A+AR L P+++LLDE SAL
Sbjct: 121 AMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSAL 169
Query: 1106 DTK------TE-RNIQSALNRVCASRTTIIVAH----RLSTIIHADEILVMHAGEIVERG 1154
D + + A ++ + V+H L AD I VM G I++
Sbjct: 170 DEQLRRQIREDMIAALRANG-----KSAVFVSHDREEALQY---ADRIAVMKQGRILQTA 221
Query: 1155 RHEELLER 1162
EL +
Sbjct: 222 SPHELYRQ 229
Score = 32.9 bits (76), Expect = 0.61
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLV 600
LSGG++QR A+A +L P +
Sbjct: 139 LSGGQQQRAALA-RALAPDPEL 159
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding domain;
2.40A {Haemophilus influenzae}
Length = 253
Score = 83.4 bits (207), Expect = 1e-17
Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 65/235 (27%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
+GQ+G GKST++ LL + G I + Q+IG VPQ
Sbjct: 37 LGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSIGFVPQ---------- 73
Query: 996 FNIQYARINASEEEVKEAATSADI-------HERILSFPDGYDTQYARINASEEEVKEAA 1048
A + DI H + P +D + +A
Sbjct: 74 -----------FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD---------YQVAMQAL 113
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
++ L+ + LSGG++Q + IAR + +++LLDE TSALD
Sbjct: 114 DYLNLTH--LA-----KREFTS----LSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 1109 TERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGRHEELL 1160
+ + S L + S T + H+ + ++ A++ L+++ G +L
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNIL 216
Score = 31.4 bits (72), Expect = 1.7
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 579 LSGGEKQRVAIA 590
LSGG++Q + IA
Sbjct: 129 LSGGQRQLILIA 140
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif,
beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 84.2 bits (209), Expect = 3e-17
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 69/242 (28%)
Query: 937 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN-SIK 995
G SG+GK+TI+RL+ GD++I + + + R +G+V Q+ LF + ++
Sbjct: 48 GPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKRN-VGLVFQNYALFQHMTVY 105
Query: 996 FNIQY----ARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSA 1051
N+ + R+ E + R V+E
Sbjct: 106 DNVSFGLREKRVPKDE-----------MDAR---------------------VRELLRFM 133
Query: 1052 DIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK--- 1108
+ + + + + LSGG++QRVA+AR L PQ++L DE +A+DT+
Sbjct: 134 RLES----YANRFPHE-------LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR 182
Query: 1109 ---TE-RNIQSALNRVCASRTTIIVAH----RLSTIIHADEILVMHAGEIVERGRHEELL 1160
T R + + T++ V H L AD +LV+H G + + G EE+
Sbjct: 183 ELRTFVRQVHDEMG-----VTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGTPEEVY 234
Query: 1161 ER 1162
E+
Sbjct: 235 EK 236
Score = 33.4 bits (77), Expect = 0.43
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLV 600
LSGG++QRVA+A +L +P V
Sbjct: 146 LSGGQQQRVALA-RALAPRPQV 166
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 80.4 bits (199), Expect = 4e-16
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 72/247 (29%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQD------ 986
+G SGAGK+T +R++ +G+++ D++ + + + + IG+V Q
Sbjct: 37 LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96
Query: 987 -TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVK 1045
T F N I F + +++ E I +R V+
Sbjct: 97 LTA-FEN-IAFPLTNMKMSKEE-----------IRKR---------------------VE 122
Query: 1046 EAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 1105
E A DIH + FP +LSG ++QRVA+AR L+K P ++LLDE S L
Sbjct: 123 EVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1106 DTK------TE-RNIQSALNRVCASRTTIIVAHRLS---TIIHADEILVMHAGEIVERGR 1155
D + + +QS L T ++V+H + I AD + V+ G++V+ G+
Sbjct: 172 DARMRDSARALVKEVQSRLG-----VTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVGK 224
Query: 1156 HEELLER 1162
E+L +
Sbjct: 225 PEDLYDN 231
Score = 33.0 bits (76), Expect = 0.59
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSG ++QRVA+A +LV P +
Sbjct: 141 LSGAQQQRVALA-RALVKDPSLL 162
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A
{Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 77.2 bits (191), Expect = 1e-15
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 1075 LSGGEKQRVAIARTLL-------KAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTT 1126
LSGGE QRV +A +L A Q++LLDE ++LD + + L+ +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAI 186
Query: 1127 IIVAHRLS-TIIHADEILVMHAGEIVERGRHEELL 1160
++ +H L+ T+ HA ++ G+++ GR EE+L
Sbjct: 187 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
Score = 42.2 bits (100), Expect = 5e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 989
VG +GAGKST++ + G I Q ++ S L + Q
Sbjct: 32 VGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTP 84
Score = 32.5 bits (75), Expect = 0.62
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 579 LSGGEKQRVAIA 590
LSGGE QRV +A
Sbjct: 127 LSGGEWQRVRLA 138
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 64.9 bits (159), Expect = 4e-11
Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 77/247 (31%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD-------TV 988
+G SG+GKST++ + Y SG I+ D +++ + R +G+V Q+ TV
Sbjct: 35 LGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL-PPKDRN-VGLVFQNWALYPHMTV 92
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
+ N I F ++ + E I ++ V+E A
Sbjct: 93 -YKN-IAFPLELRKAPREE-----------IDKK---------------------VREVA 118
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
I + + +P +LSGG++QRVAIAR L+K P+++LLDE S LD
Sbjct: 119 KMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDAL 167
Query: 1109 TERNIQSALNRVCASRTTIIVAH-RL-STII---H--------ADEILVMHAGEIVERGR 1155
R+ R + L T + H AD I V+ GEI++ G
Sbjct: 168 L---------RL-EVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGT 217
Query: 1156 HEELLER 1162
+E+ +
Sbjct: 218 PDEVYYK 224
Score = 32.2 bits (74), Expect = 1.0
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSGG++QRVAIA +LV +P V
Sbjct: 134 LSGGQQQRVAIA-RALVKEPEVL 155
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 64.2 bits (157), Expect = 9e-11
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 77/247 (31%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD-------TV 988
+G SG GK+T + +L Y SG+I+ D+ + + R+ +G+V Q+ TV
Sbjct: 35 LGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI-PPKYRE-VGMVFQNYALYPHMTV 92
Query: 989 LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAA 1048
F N I F ++ RI+ E + +R V E A
Sbjct: 93 -FEN-IAFPLRARRISKDE-----------VEKR---------------------VVEIA 118
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 1108
R L + D + + LSGG++QRVA+AR L+K P+++L DE S LD
Sbjct: 119 -------RKLLIDNLLDRKPTQ----LSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167
Query: 1109 TERNIQSALNRVCASRTTIIVAH-RL-STII---H--------ADEILVMHAGEIVERGR 1155
R+ R I L T + H A I V + G++V+ G
Sbjct: 168 L---------RM-IMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGT 217
Query: 1156 HEELLER 1162
+E+ +
Sbjct: 218 PDEVYDS 224
Score = 31.4 bits (72), Expect = 1.6
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSGG++QRVA+A +LV +P V
Sbjct: 134 LSGGQQQRVALA-RALVKQPKVL 155
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 61.7 bits (151), Expect = 1e-10
Identities = 57/241 (23%), Positives = 96/241 (39%), Gaps = 57/241 (23%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGVVPQDTVLFNN-S 993
+G +GAGK+T + + + G I + Q+I + R I +VP+ +F +
Sbjct: 38 IGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELT 97
Query: 994 IKFNIQ---YARINASEEEVKEAATSADIHERILS-FPDGYDTQYARINASEEEVKEAAT 1049
+ N+ Y R + + D+ E I S FP
Sbjct: 98 VYENLMMGAYNRKDKEGIK-------RDL-EWIFSLFPR--------------------- 128
Query: 1050 SADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 1109
+ ER+ Q+G G LSGGE+Q +AI R L+ P+++++DE + L
Sbjct: 129 ---LKERL--------KQLG--GT-LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
Query: 1110 ERNIQSALNRVCASRTTII-----VAHRLSTIIHADEILVMHAGEIVERGRHEELLERNG 1164
+ + ++ TTI+ L A V+ G+IV G+ ELL+
Sbjct: 175 VSEVFEVIQKINQEGTTILLVEQNALGALK---VAHYGYVLETGQIVLEGKASELLDNEM 231
Query: 1165 V 1165
V
Sbjct: 232 V 232
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 59.9 bits (146), Expect = 2e-09
Identities = 59/244 (24%), Positives = 94/244 (38%), Gaps = 89/244 (36%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD--------- 986
+G SG GK+T +R++ + G I+I ++ + A + I V P+D
Sbjct: 35 LGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV-----ADPEKGIFVPPKDRDIAMVFQS 89
Query: 987 -------TVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINA 1039
TV ++N I F ++ ++ E I +R
Sbjct: 90 YALYPHMTV-YDN-IAFPLKLRKVPRQE-----------IDQR----------------- 119
Query: 1040 SEEEVKEAATSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLD 1099
V+E A + E + P +LSGG++QRVA+ R +++ PQ+ L+D
Sbjct: 120 ----VREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMD 164
Query: 1100 EATSALDTKTERNIQSALNRVCASRTTIIVAH-RL-STII---H--------ADEILVMH 1146
E S LD K L RV R + +L T I H D I VM+
Sbjct: 165 EPLSNLDAK--------L-RV-RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN 214
Query: 1147 AGEI 1150
G +
Sbjct: 215 RGVL 218
Score = 31.1 bits (71), Expect = 2.2
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSGG++QRVA+ ++V KP VF
Sbjct: 140 LSGGQRQRVALG-RAIVRKPQVF 161
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis,
nucleotide-binding, phosphorylation, RNA- binding,
rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae}
PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 60.4 bits (146), Expect = 3e-09
Identities = 52/318 (16%), Positives = 102/318 (32%), Gaps = 70/318 (22%)
Query: 895 KIEENMEEDQFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFY 954
K + +F + + + I + L + +G +GAGKST+I +L
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQ-----ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723
Query: 955 DVESGDI-----------------FIDNQNIKTVSQASLRQAIGVVPQDTV--------- 988
SG++ I++ KT S+ + ++T+
Sbjct: 724 LPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINE 783
Query: 989 -----------LFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFP----DGYDTQ 1033
+ + ++R E + + + S D
Sbjct: 784 NDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA 843
Query: 1034 YARINASEEEVKEAATSADIHERILS--FPDGYDTQVGER----GL-----------KLS 1076
+ E + D+ E + S F ++ E GL LS
Sbjct: 844 WIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLS 903
Query: 1077 GGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR---L 1133
GG+K ++ +A + P +++LDE T+ LD + + AL II+ H
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFT 961
Query: 1134 STIIHADEILVMHAGEIV 1151
+ +E+ + G +
Sbjct: 962 KNL--TEEVWAVKDGRMT 977
Score = 58.5 bits (141), Expect = 1e-08
Identities = 41/197 (20%), Positives = 68/197 (34%), Gaps = 61/197 (30%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 995
G +G GKST++R + Q G Q+
Sbjct: 467 CGPNGCGKSTLMRAIAN------------------------GQVDGFPTQEEC------- 495
Query: 996 FNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHE 1055
R E ++ + + + + G T +E +K+
Sbjct: 496 ------RTVYVEHDIDGTHSDTSVLDFVFE--SGVGT--------KEAIKDKLIE----- 534
Query: 1056 RILSFPDG-YDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 1114
F D + LSGG K ++A+AR +L+ I+LLDE T+ LDT +
Sbjct: 535 --FGFTDEMIAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLV 588
Query: 1115 SALNRVCASRTTIIVAH 1131
+ LN T+I ++H
Sbjct: 589 NYLNT--CGITSITISH 603
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 4e-08
Identities = 90/603 (14%), Positives = 167/603 (27%), Gaps = 212/603 (35%)
Query: 637 VQQYTTREIEIELFRHLHGLSLR--WHLSRKT---GEVLR-----VMNRGTD-------- 678
+ Y+TR + + HG SL + + L+ ++ T+
Sbjct: 1 MDAYSTRPLTLS-----HG-SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 679 -SISNL----LNYVLFQIIP---TILDIVIAIVF--FVSTFSTWYGVIVFTTMALYL--- 725
+ + L L YV + P D V+ + F + + L
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY---------------LEGN 99
Query: 726 -VTSIVVT---EWRTKFQRKMNL------ADNALN---TRSIDSLLNFETVK------Y- 765
+ ++ E T + L A + +S L F V
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQLVA 158
Query: 766 -YG----AEEY--EIKE-YGKAIQTYQ--VAEYQNSLSLVFLNSLQNLIITGGLLAGSLL 815
+G ++Y E+++ Y QTY V + + L+ L + + L
Sbjct: 159 IFGGQGNTDDYFEELRDLY----QTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQGL 213
Query: 816 CVHEVVNNQTLTVGDYTL---FVSYILQLYVPLNWFDALTRYLEASLVPLPKKTNAKECR 872
+ E + N + T L +S PL L Y+ +
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPIS------CPLIGVIQLAHYVVT-------------AK 254
Query: 873 TI--------SCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIA 924
+ S + T +V I E + F R AI L I
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVA---IAETDSWESFF----VSVRKAITVLFFIG 307
Query: 925 LESQLVW----------------------YLLQVGQSGAGKSTIIRLLFRF--YDVESGD 960
+ + +L + S + + + + +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI--SNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 961 IFIDNQNIKTVSQASLRQAIGVV---PQDTVLFNNSI---------------------KF 996
+ I N + VV PQ N ++ KF
Sbjct: 366 VEISLVN-------GAKNL--VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 997 NIQYARINA---------SEEEVKEAATSADI--HERILSFP-----DGYDTQYARINAS 1040
+ ++ + + + + + + ++ + + + P DG D + + S
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 1041 EEEVK---------EAATSADI-HERILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLL 1090
E V E T H IL F G + +G + G RV +A TL
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATH--ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Query: 1091 KAP 1093
P
Sbjct: 535 INP 537
Score = 47.0 bits (111), Expect = 4e-05
Identities = 44/262 (16%), Positives = 79/262 (30%), Gaps = 76/262 (29%)
Query: 970 TVSQASLRQAIGVVPQDTVLFNNSIK--FNIQYARINASEEEVK---EAATSADIHERIL 1024
T+S SL + +VP + + ++ FN + E E T A++ + L
Sbjct: 10 TLSHGSLEHVL-LVPTASFFIASQLQEQFN---KILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 1025 SFPDGYDTQYARINASEEEVKEAATSADIHERIL-SFPDGYDTQVGERGLKLSGGEKQRV 1083
+ + +S E + + L F + Y L G + +
Sbjct: 66 GY----------V-SSLVEPSKVGQFDQVLNLCLTEFENCY----------LEGND---I 101
Query: 1084 -AIARTLLKAPQIVLLD---------EATSALDTKTERNIQSALNRVCASRTTIIVA--- 1130
A+A LL+ L+ A ++ SAL R +VA
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 1131 --------------------HRLSTIIH-ADEILVMHAGEIVERGRHEELLERNGVYASM 1169
+ +I + E L E++ E + G+
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS----ELIRTTLDAEKVFTQGLNILE 217
Query: 1170 WIQQNTKQSEPSSD--ESPPSS 1189
W++ + P D S P S
Sbjct: 218 WLE--NPSNTPDKDYLLSIPIS 237
Score = 46.6 bits (110), Expect = 5e-05
Identities = 46/260 (17%), Positives = 76/260 (29%), Gaps = 79/260 (30%)
Query: 892 IENKIEENMEED--QFGFRKGKGTRDAIGCLRMIALESQLVWYLLQVGQSGAGKSTIIRL 949
I + + N FG KGK R+ Y + ++
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIREN---------------YSAMIFETIVDGKLKTEK 1705
Query: 950 LFRFYDVESGDIFIDN--------QN----IKTVSQASLR--QAIGVVPQDTVLFNNSIK 995
+F+ + S + Q + + +A+ ++ G++P D
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF------ 1759
Query: 996 FNIQYARINA--SEEEVKE--A-ATSADIHERILSFPDGYDTQYARINASEEEVK--EAA 1048
A S + E A A+ AD+ +S + + R + V E
Sbjct: 1760 ---------AGHS---LGEYAALASLADV----MSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 1049 TS-----ADIHERI-LSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAP--QIVL--- 1097
S A R+ SF V ER K +G V I Q V
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL---VEIVN--YNVENQQYVAAGD 1858
Query: 1098 ---LDEATSALDTKTERNIQ 1114
LD T+ L+ + I
Sbjct: 1859 LRALDTVTNVLNFIKLQKID 1878
Score = 46.2 bits (109), Expect = 7e-05
Identities = 52/304 (17%), Positives = 92/304 (30%), Gaps = 113/304 (37%)
Query: 458 QGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELF----RHLH---GLSLRWHLSRKTGE 510
QG GMG L Y T + +++ H G S+ +
Sbjct: 1624 QGSQEQGMG-----MDL-------YKTSKAAQDVWNRADNHFKDTYGFSIL-DIVINNPV 1670
Query: 511 VLRVMNRGTDS--ISNLLNYVLFQIIP---TILDIVIAIVFFVSTFSTWYG--------- 556
L + G I + ++F+ I + + + ST T+
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 557 ----VIVFTTMALYLGKNTVGERGLK--------LSGGE----KQRVAIA----LNSLVD 596
+ A + + +GL S GE ++A + SLV+
Sbjct: 1731 FTQPALTLMEKAAF---EDLKSKGLIPADATFAGHSLGEYAAL---ASLADVMSIESLVE 1784
Query: 597 KPLVF-RWDYVLIFVGFKFLQ--------GGGTGGMGVLNNVRSLLWIGVQ--QYTTREI 645
+VF R G +Q G GM +N R + QY +
Sbjct: 1785 --VVFYR--------G-MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 646 EIELFRHLHGLSLRWHLSRKTGEVLRVMN--------------RGTDSISNLLNYVLFQI 691
++TG ++ ++N R D+++N+LN++ Q
Sbjct: 1834 -----------------GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
Query: 692 IPTI 695
I I
Sbjct: 1877 IDII 1880
Score = 41.2 bits (96), Expect = 0.003
Identities = 118/696 (16%), Positives = 190/696 (27%), Gaps = 301/696 (43%)
Query: 55 LLIFANLTFVNLKRLDWWFSLKTL---------DD----KIEMYI----FVVYYV--GSL 95
LL+ F +L F K L DD E+ +V V +
Sbjct: 20 LLVPTAS-FFIASQLQEQF-NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 96 TLFVLGLKAPGLTH-TRNYYNLNGDSSSSQNNLESERLMHTGSTWAGAAKKIKTLAPFLW 154
F L LT Y L G N++ H A L
Sbjct: 78 GQFDQVLNL-CLTEFENCY--LEG------NDI------HA------------LAAKLLQ 110
Query: 155 PKKSALLKLQVIICILLLIIARVINLFVPISKMEFCPPNISFFDVWVNHGTSACFMDTVS 214
+ L+K + +I + AR++ P K SA F
Sbjct: 111 ENDTTLVKTKELIKNYIT--ARIM-AKRPFDKKS----------------NSALFRAVGE 151
Query: 215 SSILATFLLLFGGTQLWMYKKYSNRATNVLPSKLYYFQIFMSVLMCLVVVVKYALEAALI 274
+ A + +FGG Q N YF+ E L
Sbjct: 152 GN--AQLVAIFGG-Q-------GNTDD--------YFE-----------------E--L- 173
Query: 275 HQRTLF-MYQIVSGGLLLFSFTFATYLVSLERNYRLPTAPPQGHGLVLLVFWTMLLIFAN 333
R L+ Y ++ G L+ FS A L L R L GL
Sbjct: 174 --RDLYQTYHVLVGDLIKFS---AETLSELIRT-TLDAEKVFTQGL-------------- 213
Query: 334 LTFVNLKRLDWWFSLKTQNNLESERLMHTGSTWAGAAKKIKTLAPFLWPKKSALLKLQVI 393
N+ L+W L+ +N + + + P P +
Sbjct: 214 ----NI--LEW---LENPSNTPDKDYLLS--------------IPISCP----------L 240
Query: 394 ICILLL----IIARVINL----FVPIYNRLL-----VIIIIIIILSG-WETLNMNSLVDK 439
I ++ L + A+++ ++ + I + WE+ ++
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR--- 297
Query: 440 PLVFRWDYVLIFVGF-------------KFLQGGGTGGMGV----LNNVRSLLWIGVQQY 482
L F+G L+ GV L+ + +L VQ Y
Sbjct: 298 -KAITV---LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQEQVQDY 352
Query: 483 ---------TTREIEIELF---RH---------LHGLSLRW---------------HLSR 506
+++EI L ++ L+GL+L R
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 507 K---TGEVLRV--------MNRGTDSISNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWY 555
K + L V + +D I+ L + I V+ TF
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP---VY--DTFD--- 464
Query: 556 GVIVFTTMALYLGKNTVGERGLKLSGGEKQRVAIALNSLVD----KPLVFRWD------- 604
G + R L S E +VD P+ +W+
Sbjct: 465 ------------GSDL---RVLSGSISE---------RIVDCIIRLPV--KWETTTQFKA 498
Query: 605 -YVLIFVGFKFLQG-GGTGGMGVL-NNVRSLLWIGV 637
++L F G GG G+GVL + + + V
Sbjct: 499 THILDF-------GPGGASGLGVLTHRNKDGTGVRV 527
Score = 40.4 bits (94), Expect = 0.004
Identities = 49/260 (18%), Positives = 84/260 (32%), Gaps = 70/260 (26%)
Query: 616 QGGGTGGMGVLNNVRSLLWIGVQQYTTREIEIELF----RHLH---GLSLRWHLSRKTGE 668
QG GMG L Y T + +++ H G S+ +
Sbjct: 1624 QGSQEQGMG-----MDL-------YKTSKAAQDVWNRADNHFKDTYGFSIL-DIVINNPV 1670
Query: 669 VLRVMNRGTDS--ISNLLNYVLFQIIP---TILDIVIAIVFFVSTFSTWYGVIV------ 717
L + G I + ++F+ I + + + ST T+
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 718 FTTMALYLVTSIVVTEWRTKFQRKMN-------------LADNALNTRSIDSLLNFET-- 762
FT AL L+ + ++K + LA A +++ E+
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA-------DVMSIESLV 1783
Query: 763 --VKYYG---AEEYEIKEYGKAIQTYQ-VAEYQNSLSLVF-LNSLQNLIITGGLLAGSLL 815
V Y G E G++ Y +A ++ F +LQ ++ G G L+
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRS--NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 816 CVHEVVN-N----QTLTVGD 830
E+VN N Q + GD
Sbjct: 1842 ---EIVNYNVENQQYVAAGD 1858
Score = 30.8 bits (69), Expect = 3.4
Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 53/134 (39%)
Query: 429 ETLNMNSLVDKPLVF-RWDYVLIFVGFKFLQ--------GGGTGGMGVLNNVRSLLWIGV 479
+ +++ SLV+ +VF R G +Q G GM +N R
Sbjct: 1775 DVMSIESLVE--VVFYR--------G-MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 480 Q--QYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMN--------------RGTDSIS 523
+ QY + ++TG ++ ++N R D+++
Sbjct: 1824 EALQYVVERV-----------------GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT 1866
Query: 524 NLLNYVLFQIIPTI 537
N+LN++ Q I I
Sbjct: 1867 NVLNFIKLQKIDII 1880
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 54.8 bits (133), Expect = 4e-08
Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 40/240 (16%)
Query: 940 GAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVP--QDTVLFNN-SIKF 996
G+GKST+I ++ F + G ++ +N++I A L G+V Q ++
Sbjct: 43 GSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY-GIVRTFQTPQPLKEMTVLE 101
Query: 997 NIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHER 1056
N+ I E + I + EEE+ E A +
Sbjct: 102 NLLIGEICPGESPLNSLFYKKWIPK-------------------EEEMVEKA------FK 136
Query: 1057 ILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA 1116
IL F + +LSGG+ + V I R L+ P+++++DE + + +I +
Sbjct: 137 ILEFL-KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 1117 LNRVCASRTTI-IVAHRLSTIIH-ADEILVMHAGEIVERGRHEELLERNGVYASMWIQQN 1174
+ + A T I+ HRL +++ D + VM G+I+ GR EE ++ + +
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN--------VLSD 247
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 55.7 bits (135), Expect = 5e-08
Identities = 61/252 (24%), Positives = 95/252 (37%), Gaps = 87/252 (34%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR------QAIGVVPQDTVL 989
+G SG GK+T +R++ + G I+ ++++ + R Q+ V P TV
Sbjct: 43 LGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD-RNISMVFQSYAVWPHMTV- 100
Query: 990 FNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAAT 1049
+ N I F ++ + E I +R V+ AA
Sbjct: 101 YEN-IAFPLKIKKFPKDE-----------IDKR---------------------VRWAAE 127
Query: 1050 SADIHE------RILSFPDGYDTQVGERGLKLSGGEKQRVAIARTLLKAPQIVLLDEATS 1103
I E LS GG++QRVA+AR ++ P ++L+DE S
Sbjct: 128 LLQIEELLNRYPAQLS-----------------GGQRQRVAVARAIVVEPDVLLMDEPLS 170
Query: 1104 ALDTKTERNIQSALNRVCASRTTIIVAH-RL-STII---H--------ADEILVMHAGEI 1150
LD K RV A R I +L T I H D I VM+ G++
Sbjct: 171 NLDAKL---------RV-AMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220
Query: 1151 VERGRHEELLER 1162
++ G E+ R
Sbjct: 221 LQIGSPTEVYLR 232
Score = 31.4 bits (72), Expect = 1.9
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSGG++QRVA+A ++V +P V
Sbjct: 142 LSGGQRQRVAVA-RAIVVEPDVL 163
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A
{Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 50.9 bits (122), Expect = 2e-07
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Query: 1042 EEVKEAATSADIHERILSFPD-GYDTQVGERGLK-LSGGEKQRVAIARTLLKA------P 1093
E E S + + + ER L LSGGE+ + +A L +
Sbjct: 23 AEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEI 82
Query: 1094 QIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVAHRLSTIIHADEILVM------H 1146
+++LDE T LD + R + + + R + I+V+H AD ++ +
Sbjct: 83 SLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSS 142
Query: 1147 AGEIV 1151
E+V
Sbjct: 143 KVEVV 147
Score = 30.5 bits (69), Expect = 1.5
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 533 IIPTILDIVI--AIVFFVSTFSTWYGVIVF----TTMALYLGKNTVGERGLKLSGGEKQR 586
L + A F Y +V + L++ LSGGE+
Sbjct: 6 AREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIA 65
Query: 587 VAIAL 591
+ +A
Sbjct: 66 LGLAF 70
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane
protein, ATPase, ABC transporter, membrane transmembrane;
HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB:
1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A*
3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 52.9 bits (128), Expect = 4e-07
Identities = 37/89 (41%), Positives = 46/89 (51%), Gaps = 23/89 (25%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 1133
LSGG++QRVAI RTL+ P + LLDE S LD L RV R I H RL
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA--------L-RV-QMRIEISRLHKRL 183
Query: 1134 -STII---H--------ADEILVMHAGEI 1150
T+I H AD+I+V+ AG +
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
Score = 32.9 bits (76), Expect = 0.55
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 966
VG SG GKST++R++ + SGD+FI +
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFIGEK 65
Score = 29.8 bits (68), Expect = 5.6
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 579 LSGGEKQRVAIALNSLVDKPLVF 601
LSGG++QRVAI +LV +P VF
Sbjct: 134 LSGGQRQRVAIG-RTLVAEPSVF 155
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 51.0 bits (123), Expect = 6e-07
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 1132
SGGEK+R I + L+ P +LDE S LD + + +N + + +++ H R
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204
Query: 1133 LSTIIHADEILVMHAGEIVERGRHE--ELLERNGVYASMWIQQNTKQS 1178
+ I D++ VM G +V G E LE G Y W+++ K+
Sbjct: 205 ILNYIQPDKVHVMMDGRVVATGGPELALELEAKG-YE--WLKEKVKEG 249
Score = 29.4 bits (67), Expect = 6.1
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 937 GQSGAGKSTIIRLLF--RFYDVESGDIFIDNQNI 968
G +GAGKST+ ++L Y VE G+I +D +NI
Sbjct: 36 GPNGAGKSTLGKILAGDPEYTVERGEILLDGENI 69
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 51.6 bits (123), Expect = 8e-07
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 13/132 (9%)
Query: 1037 INASEEEVKEAATSADIHERILSF-PDGYDTQVGERGLK-----LSGGEKQRV------A 1084
I E+ T E ++ + V G + LSGGE+ + A
Sbjct: 205 IGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLA 264
Query: 1085 IARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHADEIL 1143
++ L +++LDE T LD + R + + + R I+V+H AD ++
Sbjct: 265 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324
Query: 1144 VMHAGEIVERGR 1155
+ +
Sbjct: 325 RISLENGSSKVE 336
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 49.5 bits (119), Expect = 2e-06
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 1076 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 1132
SGGEK+R I + + P++ +LDE+ S LD + + +N + R+ IIV H R
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225
Query: 1133 LSTIIHADEILVMHAGEIVERGRHE--ELLERNGVYASMWIQQ 1173
+ I D + V++ G IV+ G + LE G Y W+ +
Sbjct: 226 ILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQG-YG--WLTE 265
Score = 29.8 bits (68), Expect = 5.5
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 937 GQSGAGKSTIIRLLF--RFYDVESGDIFIDNQNI 968
G +G+GKST+ L Y+V G + +++
Sbjct: 53 GPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 8e-06
Identities = 73/522 (13%), Positives = 150/522 (28%), Gaps = 153/522 (29%)
Query: 758 LNFETVKYYGAEEYEIKEYGKAIQTYQ--------VAEYQNSLSLVFLNS-LQNLIITGG 808
++FET G +Y+ Y + ++ + Q+ + + ++I++
Sbjct: 7 MDFET----GEHQYQ---YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 809 LLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQL-YVPLNWFDALTRYLEASLVPLPKKTN 867
++G+L +++ Q V FV +L++ Y + ++ P
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQK---FVEEVLRINY---KFL--MSPIKTEQRQPSMMTRM 111
Query: 868 AKECRTISCICHLTKAVTRIVLKRIENKIEENMEEDQFGFRKGKGTR-DAIGCLRMIALE 926
E R R+ N + F K +R LR LE
Sbjct: 112 YIEQR-----------------DRLYNDNQV--------FAKYNVSRLQPYLKLRQALLE 146
Query: 927 SQLVWYLLQVGQSGAGKSTIIRLLFRFYDVE---SGDIF-IDNQNIKTVS-----QASLR 977
+ +L G G+GK+ + + Y V+ IF ++ +N + L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 978 QAIGVVPQDTVLFNNSIKFNI--------------QYAR---I--NASEEEVKEA----- 1013
I +++IK I Y + N + A
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 1014 ---ATSADI------------HERILSFPDGYDTQYAR------INASEEEVKEAATSAD 1052
T+ H + + ++ +++ + +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1053 ------IHERILSFPDGYD----------TQVGERGLK-LSGGEKQRV----AIARTLLK 1091
I E I +D T + E L L E +++ ++
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 1092 APQIVL------LDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 1145
P I+L + ++ + S + + T I + L + + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 1146 HAGEIVERGRHEELLERNGVYASMWIQQNTKQSEPSSDESPP 1187
H IV+ Y N ++ S D PP
Sbjct: 446 HR-SIVDH------------Y-------NIPKTFDSDDLIPP 467
Score = 46.4 bits (109), Expect = 6e-05
Identities = 100/662 (15%), Positives = 183/662 (27%), Gaps = 186/662 (28%)
Query: 477 IGVQQYTTREIEIELFRH--LHGLSLRWHLSRKTGEVLRVMNRGTDSISNLLN-----YV 529
G QY ++I + +F + + + +L D I +
Sbjct: 11 TGEHQYQYKDI-LSVFEDAFVDNFDCK-DVQDMPKSILS--KEEIDHIIMSKDAVSGTLR 66
Query: 530 LFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLGKNTVGERGLKLSGGEKQRVAI 589
LF + + + ++ F Y F + K + + +QR
Sbjct: 67 LFWTLLSKQEEMVQ-KFVEEVLRINYK---FLMSPI---KTEQRQPSMMTRMYIEQR--- 116
Query: 590 ALNSLVDKPLVFRWDYVLIFVGFKFLQGG-------------GTGGMG-------VLNNV 629
+ L + VF V + L+ G G G V +
Sbjct: 117 --DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 630 RSLL-------WIGVQQYTTREIEIELFRHL-HGLSLRWHLSRKTGEVLRV-MNRGTDSI 680
+ W+ ++ + E +E+ + L + + W +++ ++ +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 681 SNLLNYVLFQIIPTILDIV----IAIVFFVS--TFSTWYGVIVFTTMALYLVTSIVVTEW 734
LL ++ +L V F +S T V ++ T I +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 735 RTKFQRK--MNLADNALNTRSID-------------SLL------NFETVKYYGAEEYEI 773
+L L+ R D S++ T + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNC 352
Query: 774 KEYGKAIQ-TYQV---AEYQN---SLSLVFLNSLQNLIITGGLLAGSLL-------CVHE 819
+ I+ + V AEY+ LS VF S I LL SL+ V
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAH---IPTILL--SLIWFDVIKSDVMV 406
Query: 820 VVN---NQTLTVGDYTLFVSYILQLYVPLNWFDALTRYLEASLV---PLPKKTNAKECRT 873
VVN +L I +Y+ L L S+V +PK ++ +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 874 ISC---IC-----HLTKAVTRIVLKRIENKIEENMEEDQ--------FGFRKGKGTRDAI 917
HL E+ E F F + K
Sbjct: 467 PYLDQYFYSHIGHHLKNI--------------EHPERMTLFRMVFLDFRFLEQK------ 506
Query: 918 GCLRMIALESQLVWYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR 977
+R W SG+ +T+ +L +FY DN
Sbjct: 507 --IR----HDSTAW-----NASGSILNTLQQL--KFY----KPYICDND----------- 538
Query: 978 QAIGVVPQDTVLFNNSIKFNIQYARINASEEEVKEAATSADIHERILSFPDG--YDTQYA 1035
P+ L N + F + EE + D+ L D ++ +
Sbjct: 539 ------PKYERLVNAILDFLPKI-------EENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Query: 1036 RI 1037
++
Sbjct: 586 QV 587
Score = 45.2 bits (106), Expect = 1e-04
Identities = 88/591 (14%), Positives = 165/591 (27%), Gaps = 200/591 (33%)
Query: 144 KKIKTLAPFLWPKKSALLKLQVIICILL---------LIIARVINLFVPISKMEFCPPNI 194
+ L + ALL+L+ +L+ + V + KM+F I
Sbjct: 135 QPYLKL-------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF---KI 184
Query: 195 SFFDVWVNHGTSACFMDTVSSSILATFLLLFGGTQLWMYKKYSNRATNVLPSKLYYFQIF 254
F W+N C +L L + S+ ++N + +++ Q
Sbjct: 185 --F--WLNLKN--CNSPETVLEMLQKLLYQIDP----NWTSRSDHSSN-IKLRIHSIQAE 233
Query: 255 MSVLM-------CLVVV--VKYA--LEAALIHQRTLFMYQIVSGGLLLFSFTFATYLVSL 303
+ L+ CL+V+ V+ A A + + L T T
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--------------T--T----- 272
Query: 304 ERNYRLPTAPPQGHGLVLLVFWTMLLIFANLTFVNLKRLDWWFSLKTQNNLESERLMHTG 363
R ++ T L A T ++L + E + L
Sbjct: 273 -RFKQV----------------TDFLSAATTTHISLDHHSMTLTPD-----EVKSL---- 306
Query: 364 STWAGAAKKIKTLAPFLWPKKSALLKLQVIICILLLI--IARVINLFVPIYNRLL----- 416
L +L + L +V+ + IA I + ++
Sbjct: 307 ------------LLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 417 -VIIIIIIILSGWETLNMNSLVDKPLVFRWDYVLIFVGFKFLQGGGTGGMGVLNNVRSLL 475
+ II L+ E + D+ VF I +L SL+
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHI-------------PTILL----SLI 395
Query: 476 WIGVQQYTTREIEIELFR-------------HLHGLSLRWHLSRKTGEVLRVMNRGTDSI 522
W V + + +L + + + L L K + D
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE--LKVKLENEYALHRSIVDHY 453
Query: 523 SNLLNYVLFQIIPTILDIVIAIVFFVSTFSTWYGVIVFTTMALYLGKNTVGERGLKLSGG 582
+ + +IP LD +Y ++G + L
Sbjct: 454 NIPKTFDSDDLIPPYLD------------QYFY---------SHIGHH--------LKNI 484
Query: 583 EKQRVAIALNSLVDKPLVFRWDYVLIFVGFKFLQ------GGGTGGMGVLNNVRSLL--- 633
E ++ +FR ++F+ F+FL+ G + N L
Sbjct: 485 EHP----------ERMTLFR----MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 634 --WIGVQ--QYTTREIEIELFRHLHGLSLRWHLSRKTGEVLRVMNRGTDSI 680
+I +Y I F +L S+ T + + ++I
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENL--ICSKYTDLLRIALMAEDEAI 579
Score = 44.1 bits (103), Expect = 3e-04
Identities = 80/633 (12%), Positives = 182/633 (28%), Gaps = 181/633 (28%)
Query: 625 VLNNVRSLLWIGVQQYTTREIEIELFRHLHGLS----LRWHLSRKTGEVLRVMNRGTDSI 680
V + +S+L + EI+ + +S L W L K E+++ I
Sbjct: 38 VQDMPKSIL-------SKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 681 SNLLNY--VLFQIIPTILDIVIAIVFFVSTFS-TWYGVIVFTTMALYLVTSI-VVTEWRT 736
NY ++ I + ++ + VF Y V+ + + R
Sbjct: 90 ----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---YNVSRLQPYLKLRQ 142
Query: 737 KFQR----------------KMNLADNALNTRSIDSLLNFETVKYYGAEEYEIKEYGKAI 780
K +A + + + ++F+ ++ +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FW------LN------ 188
Query: 781 QTYQVAEYQNSLSLVFLNSLQNLIITGGLLAGSLLCVHEVVNNQTLTVGDYTLFVSYILQ 840
+ + ++ L LQ L+ +++ N +T +
Sbjct: 189 ----LKNCNSPETV--LEMLQKLL-------------YQIDPN-------WTSRSDHSSN 222
Query: 841 LYVPLNWF-DALTRYLEA-----SLVPL-----PKKTNA--KECRTISCICHLT---KAV 884
+ + ++ L R L++ L+ L K NA C+ + LT K V
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-----LTTRFKQV 277
Query: 885 TRIVLKRIENKIEENMEEDQFGFRKGKGTRDAIGCLRMIA--LESQLVWYL-LQVGQSGA 941
T + I ++ + + L L +++ ++
Sbjct: 278 TDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 942 ----GKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ---AIGVVPQDTVLFNNSI 994
G +T ++ + + I++ ++ + A R+ + V P
Sbjct: 336 SIRDGLATWDN--WKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSA------- 385
Query: 995 KFNIQYARI-----NASEEEVKEAATSADIHERILSFPDGYDTQYARINA-SEEEVKEAA 1048
+I + + + +V +H+ L ++ I + E +
Sbjct: 386 --HIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTI-SIPSIYLELKVKLE 440
Query: 1049 TSADIHERILSFPDGYDTQVGERGLKLSGGEKQRVA------IARTLLKAPQI------- 1095
+H I+ D Y+ + + I L
Sbjct: 441 NEYALHRSIV---DHYNIP---KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 1096 -VLLDEATSALDTKTERNIQSALNRVCASRTTI---------IVAH------RLSTIIHA 1139
V LD L+ K R+ +A N + T+ I + ++ I+
Sbjct: 495 MVFLD--FRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD- 550
Query: 1140 DEILVMHAGEIVERGRHEELL------ERNGVY 1166
+ E + ++ +LL E ++
Sbjct: 551 ---FLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 32.9 bits (74), Expect = 0.87
Identities = 45/279 (16%), Positives = 79/279 (28%), Gaps = 76/279 (27%)
Query: 10 DIVSGG------LLLFSFTFTT-YLVSLERNY------RLPTAPPQGHGLVLLVFWTMLL 56
D +S L S T T + SL Y LP + L + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 57 IFANLTFVNLKRLDWW-------FSLKTLDDKI--EMY----IF-----------VVYYV 92
T+ N K ++ SL L+ +M+ +F + +
Sbjct: 339 DGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 93 GSLT----LFVLGLKAPGLTHTRN---YYNLNGDSSSSQNNLESERLMHTGSTWAGAAKK 145
+ + V L L + ++ + LE+E +H +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---------RS 448
Query: 146 IKTLAPFLWPKK---SALLKLQV--IICILL---LIIARVINLFVPISKMEFCPPNISFF 197
I + + PK L+ + + L + + F
Sbjct: 449 I--VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL---DFRFL 503
Query: 198 DVWVNHGTSACFMDTVSSSILATFLLLFGGTQLWMYKKY 236
+ + H ++A S SIL T QL YK Y
Sbjct: 504 EQKIRHDSTAW---NASGSILNTLQ------QLKFYKPY 533
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 44.5 bits (105), Expect = 2e-04
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 12/154 (7%)
Query: 999 QYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSADIHERIL 1058
+ ++ E + + + + I E +
Sbjct: 206 EKEKLTKFVEYLDKVRRIFGRNGFQAYL---REKYVPLIQKYLNEAFSEFDLPYSFVELT 262
Query: 1059 SFPDGYDTQVG-ERGLK-LSGGEKQRV------AIARTLLKAP-QIVLLDEATSALDTKT 1109
+ + LSGGE+ V AIA L+ + ++LDE T LD
Sbjct: 263 KDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR 322
Query: 1110 ERNIQSALNRVCASRTTIIVAHRLSTIIHADEIL 1143
+ +V + II+ H AD I+
Sbjct: 323 RAKLAEIFRKVKSIPQMIIITHHRELEDVADVII 356
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 36.5 bits (85), Expect = 0.020
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 1075 LSGGEKQRVAIART----LLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-----SRT 1125
+SGGEK A+A K L DE + LD + N++ RV S+
Sbjct: 65 MSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLD---DANVK----RVADLIKESSKE 117
Query: 1126 T--IIVAHRLSTIIHADEIL--VMHAG 1148
+ I++ R + +AD+I+ M G
Sbjct: 118 SQFIVITLRDVMMANADKIIGVSMRDG 144
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle; HET:
ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Length = 430
Score = 37.0 bits (86), Expect = 0.036
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 23/80 (28%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIV------LLDEATSALDTKTERNIQSALNRVC------A 1122
LSGGEK A+A LL A +LDE +ALD N+Q R+
Sbjct: 334 LSGGEKTVAALA--LLFAINSYQPSPFFVLDEVDAALD---ITNVQ----RIAAYIRRHR 384
Query: 1123 SRTT--IIVAHRLSTIIHAD 1140
+ I+++ + + +D
Sbjct: 385 NPDLQFIVISLKNTMFEKSD 404
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 36.3 bits (85), Expect = 0.069
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 1075 LSGGEKQRVAIARTLLKAPQI------VL--LDEATSAL---DTKTERNIQSALNRVCAS 1123
LS GE QR+ +A T Q+ V+ LDE ++ L D TE + AL +
Sbjct: 380 LSPGELQRLRLA-T-----QLYSNLFGVVYVLDEPSAGLHPAD--TEALLS-ALENLKRG 430
Query: 1124 -RTTIIVAHRLSTIIHADEILVM------HAGEIVERGRHEELLE 1161
+ +V H L I AD ++ + GEI+ G E L
Sbjct: 431 GNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475
Score = 35.6 bits (83), Expect = 0.10
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVA 1130
LSGGE QR+ +A L ++ + + +LDE T+ L +Q L + V A T I V
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 1131 HRLSTIIHADEILVM------HAGEIVERGRHEEL 1159
H++ + +D +L + G +V +G E+
Sbjct: 791 HKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEV 825
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 36.0 bits (83), Expect = 0.073
Identities = 34/316 (10%), Positives = 88/316 (27%), Gaps = 46/316 (14%)
Query: 48 LLVFWTMLLIFANLTFVNLKRLDWWFSLKTLDDKIEMYIFVVYYVGSLTLFVLGLKAPGL 107
+ L+I L + + + + + + +++ +
Sbjct: 128 ITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAI 187
Query: 108 THTRNYYNLNGDSSSSQNNLESERLMHTG----STWAGAAKKIKTLAPFLWPKKS---AL 160
+ + + + L + G +T P + A+
Sbjct: 188 EMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN---------PGRDYPLAM 238
Query: 161 LKLQVIICILLLIIARVINLFVPISKMEFC-PPNISFFDVWVNHGTSACFMDTVSSSILA 219
L L V L + I + +P +++ +F + + + V S
Sbjct: 239 LLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVIS--AL 296
Query: 220 TFLLLFGGTQLWMY----------------KKYSNRATNVLPSKLYYFQ-IFMSVLMCLV 262
L + W+ ++ N +P L Q + S+ + ++
Sbjct: 297 LLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIIL 356
Query: 263 VVVK------YALEAALIHQRTLFMYQIVSGGLLLFSFTFATYLVSLERNYRLPTAPPQG 316
+ + AL L Y ++ G ++ L+R + +P
Sbjct: 357 TNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHP----DLKRTFNIPGGKGVK 412
Query: 317 HGLVLLVFWTMLLIFA 332
+ ++ T ++ F
Sbjct: 413 LVVAIVGLLTSIMAFI 428
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 35.0 bits (81), Expect = 0.13
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 1075 LSGGEKQRVAIARTLLKAPQIV------LLDEATSALD-TKTERNIQSALNRVCASRTTI 1127
LSGGEK V +A LL A + +LDE S LD ER + L I
Sbjct: 220 LSGGEKALVGLA--LLFALMEIKPSPFYVLDEVDSPLDDYNAER-FKRLLKENSKHTQFI 276
Query: 1128 IVAHRLSTIIHADEIL--VMHAG 1148
++ H + AD + M G
Sbjct: 277 VITHNKIVMEAADLLHGVTMVNG 299
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 34.7 bits (81), Expect = 0.19
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-A 1130
LSGGE QR+ +A L K + +LDE T L + R + L+R+ T+IV
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 1131 HRLSTIIHADEILVM------HAGEIVERGRHEEL 1159
H L I +AD I+ + G IV G EE+
Sbjct: 866 HNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
Score = 34.0 bits (79), Expect = 0.42
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 1075 LSGGEKQRVAIARTLLKAPQI------VL--LDEATSAL---DTKTERNIQSALNRVCAS 1123
LSGGE QR+ +A QI V+ LDE T L DT ER I++ L ++
Sbjct: 465 LSGGESQRIRLA------TQIGSGLTGVIYVLDEPTIGLHPRDT--ERLIKT-LKKL--- 512
Query: 1124 R----TTIIVAHRLSTIIHADEILVM------HAGEIVERGRHEELLE 1161
R T I+V H I +AD I+ + + G +V +G +ELL+
Sbjct: 513 RDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.4 bits (80), Expect = 0.21
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDI 961
G SG GKS+++ + + ++
Sbjct: 175 AGLSGVGKSSLLNAINPGLKLRVSEV 200
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 34.1 bits (79), Expect = 0.22
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 14/44 (31%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLR 977
GQSG GKS+++ + ++T +S+ R
Sbjct: 179 AGQSGVGKSSLLNAI------------SPELGLRTNEISEHLGR 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 33.7 bits (78), Expect = 0.29
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 15/44 (34%)
Query: 936 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLR 977
G SG GKS+I+ L + ++T VS+ + R
Sbjct: 171 AGPSGVGKSSILSRL-------------TGEELRTQEVSEKTER 201
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 33.0 bits (76), Expect = 0.50
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 936 VGQSGAGKSTII-RLLFRFYDVESGDI 961
GQSG GKS+++ LL ++ + D+
Sbjct: 221 AGQSGVGKSSLLNALLGLQNEILTNDV 247
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 32.9 bits (75), Expect = 0.67
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 1075 LSGGEKQRV--AIARTLLKAPQIVL----LDEATSALDTKTERNIQSALNRVCASRTTII 1128
LSGGE+ + ++A +L + L +DE S+LDT+ + I S L + I+
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 1129 VAHRLSTIIHADEI 1142
I H E
Sbjct: 340 F------ITHDREF 347
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET:
GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 32.4 bits (73), Expect = 0.76
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAI--GVVPQ----- 985
L+ VG+SG GKST+I LF ++ KTV + I G V
Sbjct: 11 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIV 70
Query: 986 DTVLFNNSIKFNIQYARI 1003
DT F +++ + + +
Sbjct: 71 DTPGFGDAVDNSNCWQPV 88
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 32.9 bits (76), Expect = 0.90
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-A 1130
LSGGE QRV +A L + + +LDE T+ L + L+R+ + T++V
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1131 HRLSTIIHADEILVM------HAGEIVERGRHEEL 1159
H L I AD I+ + G+IV G EE+
Sbjct: 906 HNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 32.1 bits (72), Expect = 0.97
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 933 LLQVGQSGAGKSTIIRLLFR 952
L+ VG+SG GKST+I LF
Sbjct: 21 LMVVGESGLGKSTLINSLFL 40
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 31.8 bits (71), Expect = 0.99
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 931 WYLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 969
+L GQSGAGK+TI R+ + + + + ID + +
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQK--EFQGNIVIIDGDSFR 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 31.9 bits (73), Expect = 1.0
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 20/69 (28%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV--PQDTVLF 990
+ +G G GK+T + R D F N T +G V P +
Sbjct: 14 ICLIGDGGVGKTT---YINRVLD----GRFEKNY-NAT---------VGAVNHPVTFLDD 56
Query: 991 NN-SIKFNI 998
IKFN+
Sbjct: 57 QGNVIKFNV 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A
{Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 32.1 bits (74), Expect = 1.2
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-A 1130
LSGGE QRV +A L K + +LDE T+ L R + + +N + T+IV
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1131 HRLSTIIHADEILVM------HAGEIVERGRHEEL 1159
H L I +D I+ + G +V +G E++
Sbjct: 924 HNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDV 958
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct
initiative, northeast structural genomics consortium,
NESG, function; 2.40A {Bacillus halodurans} SCOP:
c.37.1.25
Length = 189
Score = 31.1 bits (70), Expect = 1.5
Identities = 15/113 (13%), Positives = 39/113 (34%), Gaps = 7/113 (6%)
Query: 937 GQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 993
G +G GKST + L D GDI + + + ++ +
Sbjct: 9 GPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN---ITDL 65
Query: 994 IKFNIQYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKE 1046
+ A+ + + + + + + + + D + ++ + + EE+
Sbjct: 66 TVNFLL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR 117
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 31.7 bits (73), Expect = 1.7
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 1075 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-A 1130
LSGGE QRV +A L + + +LDE T+ L + L+R+ + T++V
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 1131 HRLSTIIHADEILVM------HAGEIVERGRHEEL 1159
H L I AD I+ + G+IV G EE+
Sbjct: 604 HNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 30.7 bits (69), Expect = 2.1
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 992
+L +G +GKS+I +++ F+ + + K + +D + ++
Sbjct: 23 ILLMGLRRSGKSSIQKVV--FHKMSPNETLFLESTNK-------------IYKDDISNSS 67
Query: 993 SIKFNI 998
+ F I
Sbjct: 68 FVNFQI 73
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 30.6 bits (70), Expect = 2.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 939 SGAGKSTIIRLLFRFYD 955
SG GK T+I+ L +
Sbjct: 32 SGVGKGTLIKKLLNEFP 48
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 30.1 bits (68), Expect = 2.6
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 8/38 (21%)
Query: 937 GQSGAGKSTIIRLL-----FRFYDVESGDIFIDNQNIK 969
G KST+ L + G F ++
Sbjct: 8 GPDCCFKSTVAAKLSKELKYPIIK---GSSFELAKSGN 42
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.9 bits (69), Expect = 2.6
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 992
+L VG++G GKST++ LF N + + + + L +
Sbjct: 45 ILCVGETGLGKSTLMDTLF-------------NTKFEGEPATHTQPGVQLQSNTYDLQES 91
Query: 993 SIKFNI 998
+++ +
Sbjct: 92 NVRLKL 97
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 30.2 bits (69), Expect = 2.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 939 SGAGKSTIIRLLFRFYD 955
SG GK T+I+ + +
Sbjct: 21 SGVGKGTLIKKVLSEFP 37
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 31.1 bits (71), Expect = 2.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 1067 QVGERGL-----KLSGGEKQRVAIARTLLKAPQIVLL 1098
QVG RG KL E ++A A LL +P I ++
Sbjct: 378 QVGNRGKGERIIKLVDRESYKIAAALYLL-SPYIPMI 413
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 30.1 bits (69), Expect = 2.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 939 SGAGKSTIIRLLFRFYD 955
SG GKST+++ LF Y
Sbjct: 10 SGTGKSTLLKKLFAEYP 26
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 30.2 bits (69), Expect = 3.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 939 SGAGKSTIIRLLFRFYD 955
SG GK T+ +F+ +
Sbjct: 17 SGVGKGTVREAVFKDPE 33
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 30.2 bits (69), Expect = 3.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 939 SGAGKSTIIRLLFRFYD 955
SG GK T+ + +F
Sbjct: 15 SGVGKGTVRKRIFEDPS 31
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 4.0
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 21/77 (27%)
Query: 589 IALNSLVDKPLVFRW------DYVLIFVGFKFLQGG---GTGGMGVLNN--VRSLLWIGV 637
++L +L + RW + + + G G GTG M NN + +GV
Sbjct: 645 LSLETLFN-----RWHSESWANQLTV-CGAII---GWTRGTGLMS-ANNIIAEGIEKMGV 694
Query: 638 QQYTTREIEIELFRHLH 654
+ ++ +E+ L L
Sbjct: 695 RTFSQKEMAFNLLGLLT 711
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 4.4
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 999 QYARINASEEEVKEAATSADIHERILSFPDGYDTQYARINASEEEVKEAATSAD 1052
Q R+ + +AA+ E + R + E+ K AD
Sbjct: 94 QRKRL-----QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 29.8 bits (68), Expect = 4.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 939 SGAGKSTIIRLLFRFYD 955
SGAGKST+++ LF+ +
Sbjct: 13 SGAGKSTLLKKLFQEHS 29
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.2 bits (67), Expect = 4.6
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 933 LLQVGQSGAGKSTIIRLLF 951
L+ VG+SG GKST+I LF
Sbjct: 34 LMVVGESGLGKSTLINSLF 52
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 29.4 bits (67), Expect = 4.7
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 936 VGQSGAGKSTIIRLL-----FRFYD 955
VG GAGKSTI R L FYD
Sbjct: 10 VGPMGAGKSTIGRQLAQQLNMEFYD 34
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 30.0 bits (66), Expect = 4.8
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 970
L GQ G+GK+++ +F + + I IDN K
Sbjct: 36 FLLGGQPGSGKTSLRSAIFE--ETQGNVIVIDNDTFKQ 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 29.1 bits (66), Expect = 6.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 939 SGAGKSTIIRLLFR 952
S GKST++R L
Sbjct: 29 SAVGKSTVVRCLRE 42
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 29.1 bits (66), Expect = 6.4
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 936 VGQSGAGKSTIIRLL-----FRFYD 955
+G GAGK+++ L YD
Sbjct: 11 IGLMGAGKTSVGSQLAKLTKRILYD 35
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.8 bits (67), Expect = 8.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 936 VGQSGAGKSTIIRLL 950
VG++G GK+ + +
Sbjct: 929 VGKAGCGKTATWKTV 943
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 28.7 bits (65), Expect = 8.5
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 936 VGQSGAGKSTIIRLL-----FRFYD 955
VG G G +T+ R L + F D
Sbjct: 8 VGARGCGMTTVGRELARALGYEFVD 32
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 29.2 bits (65), Expect = 8.6
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 933 LLQVGQSGAGKSTIIRLLF 951
LL +G+SG+GKS++ ++F
Sbjct: 6 LLLMGRSGSGKSSMRSIIF 24
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 29.3 bits (65), Expect = 8.7
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 933 LLQVGQSGAGKSTIIRLLF 951
+L +G GKS+I +++F
Sbjct: 2 VLLMGVRRCGKSSICKVVF 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 28.7 bits (65), Expect = 8.9
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 933 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 971
++ VG SG GK+ LL RF D F+ I TV
Sbjct: 13 VMLVGDSGVGKTC---LLVRFKD----GAFLAGTFISTV 44
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 28.3 bits (64), Expect = 9.4
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 936 VGQSGAGKSTIIRLL-----FRFYD 955
VG G+GKSTI R L D
Sbjct: 8 VGLPGSGKSTIGRRLAKALGVGLLD 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.412
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,029,069
Number of extensions: 1118350
Number of successful extensions: 3161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3048
Number of HSP's successfully gapped: 242
Length of query: 1192
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1088
Effective length of database: 3,798,009
Effective search space: 4132233792
Effective search space used: 4132233792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.1 bits)