BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13235
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1U|B Chain B, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1V|A Chain A, Structure Of Full Length Grp94 With Adp Bound
pdb|2O1V|B Chain B, Structure Of Full Length Grp94 With Adp Bound
Length = 666
Score = 144 bits (362), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 89/119 (74%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
I KA +S+RL++SPCALVAS +GW+GNMER+ + A+Q D YY SQKKT E+NPR
Sbjct: 543 IEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPR 602
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGI 128
HPLI+++ RRVK+D +D +++A ++F+TATLRSG++L D+ + +E M+R +L I
Sbjct: 603 HPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNI 661
>pdb|2O1T|A Chain A, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|B Chain B, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|C Chain C, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|D Chain D, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|E Chain E, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|F Chain F, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|G Chain G, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|H Chain H, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|I Chain I, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|J Chain J, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
Length = 450
Score = 143 bits (360), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 89/119 (74%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
I KA +S+RL++SPCALVAS +GW+GNMER+ + A+Q D YY SQKKT E+NPR
Sbjct: 316 IEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPR 375
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGI 128
HPLI+++ RRVK+D +D +++A ++F+TATLRSG++L D+ + +E M+R +L I
Sbjct: 376 HPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNI 434
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90
From Leishmania Major, Lmjf33.0312
Length = 444
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 5/121 (4%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ K +SERLS SPC LV S FGW+ +ME++ + A + + Q Y+ KKTME+NPR
Sbjct: 309 VEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQ---YMMSKKTMELNPR 365
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGIS 129
HP+I+EL RRV D D ++ ++F T+ L SGF L+D +A+ + M++ LG+S
Sbjct: 366 HPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIK--LGLS 423
Query: 130 V 130
+
Sbjct: 424 L 424
>pdb|3Q6M|A Chain A, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|B Chain B, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|C Chain C, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6N|A Chain A, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|B Chain B, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|C Chain C, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|D Chain D, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|E Chain E, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|F Chain F, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
Length = 448
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ K +S RL SPC +V S +GWT NMER+ + A + D Y++ KK +E+NP
Sbjct: 293 VEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALR---DNSTMGYMAAKKHLEINPD 349
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGI 128
H +I L ++ + D D ++ ++++TA L SGF L+D A + M++ LGI
Sbjct: 350 HSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGI 408
>pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|D Chain D, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 405
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ K +S +L D+P A+ FGW+ NMER+ + A + D Y+S KKT E++P+
Sbjct: 290 VEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALR---DSSMSSYMSSKKTFEISPK 346
Query: 70 HPLIRELYRRVKD-DPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGI 128
P+I+EL +RV + +D ++ ++++TA L SGF L + FA + ++ +LG+
Sbjct: 347 SPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLI--SLGL 404
Query: 129 S 129
+
Sbjct: 405 N 405
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 72.4 bits (176), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ K +S +L D+P A+ FGW+ NMER+ + A + D Y+S KKT E++P+
Sbjct: 562 VEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALR---DSSMSSYMSSKKTFEISPK 618
Query: 70 HPLIRELYRRVKD-DPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGI 128
P+I+EL +RV + +D ++ ++++TA L SGF L + FA + ++ +LG+
Sbjct: 619 SPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLI--SLGL 676
Query: 129 S 129
+
Sbjct: 677 N 677
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ ++ RL+D+P + + M +L + A QK P+ KY E+NP
Sbjct: 523 VKDVRLTHRLTDTPAIVSTDADEMSTQMAKL-FAAAGQKV--PEVKY------IFELNPD 573
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMM 122
H L++ R D ++AK +E ++ A L L+D F + + ++
Sbjct: 574 HVLVK----RAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 622
>pdb|2XKB|A Chain A, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|B Chain B, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|C Chain C, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|D Chain D, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|E Chain E, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|F Chain F, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|G Chain G, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|H Chain H, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|I Chain I, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|J Chain J, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|K Chain K, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|L Chain L, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
Length = 427
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 93 ATMMFQTATLRSGFMLQDS-ADFAKHV--ESMMRQTLG 127
A F+TAT+ GF+L+ S ADF K V E+ +R TLG
Sbjct: 311 AEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLG 348
>pdb|2XKA|A Chain A, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|B Chain B, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|C Chain C, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|D Chain D, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|E Chain E, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|F Chain F, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|G Chain G, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
Length = 421
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 93 ATMMFQTATLRSGFMLQDS-ADFAKHV--ESMMRQTLG 127
A F+TAT+ GF+L+ S ADF K V E+ +R TLG
Sbjct: 311 AEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLG 348
>pdb|3M8K|A Chain A, Protein Structure Of Type Iii Plasmid Segregation Tubz
Length = 428
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 93 ATMMFQTATLRSGFMLQDS-ADFAKHV--ESMMRQTLG 127
A F+TAT GF+L+ S ADF K V E+ +R TLG
Sbjct: 311 AEHQFETATXYGGFVLRPSNADFFKDVNTENRIRNTLG 348
>pdb|3M89|A Chain A, Structure Of Tubz-Gtp-G-S
Length = 427
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 93 ATMMFQTATLRSGFMLQDS-ADFAKHV--ESMMRQTLG 127
A F+TAT GF+L+ S ADF K V E+ +R TLG
Sbjct: 331 AEHQFETATXYGGFVLRPSNADFFKDVNTENRIRNTLG 368
>pdb|1SF8|A Chain A, Crystal Structure Of The Carboxy-terminal Domain Of Htpg,
The E. Coli Hsp90
pdb|1SF8|B Chain B, Crystal Structure Of The Carboxy-terminal Domain Of Htpg,
The E. Coli Hsp90
pdb|1SF8|C Chain C, Crystal Structure Of The Carboxy-terminal Domain Of Htpg,
The E. Coli Hsp90
pdb|1SF8|D Chain D, Crystal Structure Of The Carboxy-terminal Domain Of Htpg,
The E. Coli Hsp90
pdb|1SF8|E Chain E, Crystal Structure Of The Carboxy-terminal Domain Of Htpg,
The E. Coli Hsp90
pdb|1SF8|F Chain F, Crystal Structure Of The Carboxy-terminal Domain Of Htpg,
The E. Coli Hsp90
pdb|1SF8|G Chain G, Crystal Structure Of The Carboxy-terminal Domain Of Htpg,
The E. Coli Hsp90
pdb|1SF8|H Chain H, Crystal Structure Of The Carboxy-terminal Domain Of Htpg,
The E. Coli Hsp90
Length = 126
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ ++ RL+D+P A+V++ + A QK P+ KY E+NP
Sbjct: 25 VKDVRLTHRLTDTP-AIVSTDADEXSTQXAKLFAAAGQKV--PEVKY------IFELNPD 75
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMM 122
H L++ R D ++AK +E ++ A L L+D F + ++
Sbjct: 76 HVLVK----RAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRXNQLL 124
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1J|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1U|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U22|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
Length = 765
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 68 PRHPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSA-----DFAKH 117
PRH ++ +KD+ ED + I + A LR G L+ S D+A H
Sbjct: 575 PRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVH 629
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 44 NAHQKADDPQRKYYLSQKKTMEVNPRH 70
N H K+D PQ YY + +T +V+ +H
Sbjct: 506 NVHNKSDKPQELYYQATVQTDKVDGKH 532
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,216,017
Number of Sequences: 62578
Number of extensions: 130046
Number of successful extensions: 418
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 19
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)