Query psy13235
Match_columns 186
No_of_seqs 131 out of 1063
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 23:36:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00183 HSP90: Hsp90 protein; 100.0 2.5E-37 5.3E-42 288.9 12.5 134 1-138 374-507 (531)
2 PTZ00272 heat shock protein 83 100.0 5.3E-34 1.1E-38 273.2 12.3 131 1-135 547-677 (701)
3 KOG0019|consensus 100.0 3.8E-33 8.1E-38 260.4 11.0 128 1-133 525-652 (656)
4 KOG0020|consensus 100.0 9E-34 2E-38 260.8 6.6 139 3-142 622-760 (785)
5 PTZ00130 heat shock protein 90 100.0 9.9E-33 2.1E-37 266.5 11.6 131 1-136 636-766 (814)
6 COG0326 HtpG Molecular chapero 99.9 1.6E-25 3.4E-30 211.2 9.4 112 1-126 511-622 (623)
7 PRK05218 heat shock protein 90 99.9 2.3E-25 5E-30 211.4 10.3 113 1-127 501-613 (613)
8 PRK14083 HSP90 family protein; 99.8 4.8E-20 1E-24 174.9 10.5 120 1-129 467-596 (601)
9 PF12588 PSDC: Phophatidylseri 74.7 9.4 0.0002 30.6 5.7 53 70-125 2-59 (141)
10 PF06112 Herpes_capsid: Gammah 73.5 4.2 9.2E-05 32.9 3.4 40 60-99 12-60 (147)
11 KOG1824|consensus 50.8 38 0.00082 35.4 6.0 78 84-166 268-345 (1233)
12 COG4813 ThuA Trehalose utiliza 47.2 6.3 0.00014 33.8 0.0 61 15-80 86-146 (261)
13 COG1480 Predicted membrane-ass 45.5 12 0.00025 37.3 1.5 18 62-79 468-486 (700)
14 PRK01964 4-oxalocrotonate taut 41.0 27 0.00058 23.2 2.4 31 102-132 8-38 (64)
15 COG1844 Uncharacterized protei 34.9 59 0.0013 25.6 3.6 50 18-81 53-102 (125)
16 PF13431 TPR_17: Tetratricopep 34.3 12 0.00025 22.2 -0.3 17 61-77 3-19 (34)
17 smart00162 SAPA Saposin/surfac 32.0 14 0.00031 22.8 -0.1 17 165-181 16-32 (34)
18 TIGR00013 taut 4-oxalocrotonat 31.5 57 0.0012 21.3 2.8 29 104-132 10-38 (63)
19 PRK00745 4-oxalocrotonate taut 30.8 50 0.0011 21.5 2.4 31 102-132 8-38 (62)
20 PTZ00397 macrophage migration 30.3 51 0.0011 24.6 2.6 57 62-132 39-95 (116)
21 cd00491 4Oxalocrotonate_Tautom 30.2 62 0.0013 20.6 2.7 32 101-132 6-37 (58)
22 PF02199 SapA: Saposin A-type 30.1 12 0.00026 23.0 -0.7 18 165-182 16-33 (34)
23 PF04282 DUF438: Family of unk 29.9 1.6E+02 0.0035 20.9 4.9 28 97-124 37-64 (71)
24 PRK02220 4-oxalocrotonate taut 28.4 58 0.0013 21.1 2.4 31 102-132 8-38 (61)
25 KOG3046|consensus 28.2 1.4E+02 0.0031 24.2 4.9 43 87-129 19-61 (147)
26 COG4463 CtsR Transcriptional r 26.7 59 0.0013 26.4 2.5 42 64-105 73-114 (153)
27 PF04009 DUF356: Protein of un 25.4 1.2E+02 0.0026 23.4 3.9 46 22-81 56-101 (107)
28 PRK10045 acyl carrier protein 24.2 1.7E+02 0.0037 24.5 5.0 58 67-125 52-112 (193)
29 PF09748 Med10: Transcription 23.9 1.5E+02 0.0032 23.0 4.3 44 87-130 3-47 (128)
30 KOG0547|consensus 21.7 98 0.0021 30.2 3.3 58 61-123 173-232 (606)
31 KOG3241|consensus 20.0 2.3E+02 0.0049 24.1 4.8 25 98-122 156-180 (227)
No 1
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=2.5e-37 Score=288.86 Aligned_cols=134 Identities=40% Similarity=0.738 Sum_probs=112.6
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
+|+.||+. |.+|++|.||++|||||+++++|+|++|||||+||+++ +.+++.++..++||||||+||||++|++++
T Consensus 374 ~k~~L~~k-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimkaqa~~---~~~~~~~~~~kkiLEINp~HPLIk~L~~~~ 449 (531)
T PF00183_consen 374 LKELLGDK-VEKVKVSNRLVDSPAVLVSSEYGWSANMERIMKAQAMA---DMSMQEYMPSKKILEINPNHPLIKKLLKLV 449 (531)
T ss_dssp HHHHHTTS-CSEEEE-SSSSSSSEEEEE-SSSB-HHHHHHHHHHHCC---STTTSSTSC--EEEEE-TTSHHHHHHHHHH
T ss_pred HHhhhhhh-hheecccccccCCcceeecccchhHHHHHHHhhhhccc---cccccccccccceeecCCCCHHHHHHHhhh
Confidence 36789995 99999999999999999999999999999999999865 333345667899999999999999999998
Q ss_pred cCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCCCCcccCCCC
Q psy13235 81 KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVDEKVEEDD 138 (186)
Q Consensus 81 ~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~~~~~~~ 138 (186)
..+.+++.++++|+||||+|+|++||.++||++|++|+|+||.++|+++.++++++++
T Consensus 450 ~~d~~d~~~~~la~~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l~~~~~~~~~~~~ 507 (531)
T PF00183_consen 450 EKDEDDELAKDLAEQLYDTALLASGFELEDPAAFAKRINKLLEKSLGVDPDAEVEEED 507 (531)
T ss_dssp HCCTTHHHHHHHHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTTC--STTTTTTGG
T ss_pred cccchhhHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCcCCcccccc
Confidence 8888888899999999999999999999999999999999999999999988766654
No 2
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=5.3e-34 Score=273.18 Aligned_cols=131 Identities=40% Similarity=0.717 Sum_probs=113.9
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
+|++||++ |.+|++|+||++||||||++++|+|++|+|||++|+++ +.....++..+|||||||+||||++|++++
T Consensus 547 ~k~~L~~k-V~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~---~~~~~~~~~~kkiLEINP~HpiIk~L~~~~ 622 (701)
T PTZ00272 547 MKEVLGDK-VEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALR---DSSMAQYMMSKKTMELNPRHPIIKELRRRV 622 (701)
T ss_pred HHHHhCCc-ccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccc---cccccccccCCeEEEECCCCHHHHHHHHHh
Confidence 47889995 99999999999999999999999999999999998753 111123446799999999999999998876
Q ss_pred cCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCCCCcccC
Q psy13235 81 KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVDEKVE 135 (186)
Q Consensus 81 ~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~~~~ 135 (186)
..+.+++.++++|+||||+|+|++|+.++||++|++|+|+||..+|+++.++++.
T Consensus 623 ~~~~~~~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~~~ 677 (701)
T PTZ00272 623 GADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEA 677 (701)
T ss_pred hcccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCcccccc
Confidence 5555666799999999999999999999999999999999998899999887553
No 3
>KOG0019|consensus
Probab=100.00 E-value=3.8e-33 Score=260.43 Aligned_cols=128 Identities=28% Similarity=0.575 Sum_probs=119.2
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
||+.||+ +|.+|++|.||++|||||+.+++|||++|+|||++|++. +.+..++|.++++|||||+||||+.|.+++
T Consensus 525 mK~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~---d~s~~~ym~~kk~lEINP~hpivk~L~~~~ 600 (656)
T KOG0019|consen 525 MKEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALT---DNETMGYMKAKKHLEINPDHPLVKTLRQLR 600 (656)
T ss_pred HHHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhcc---ccChhhhccccceeeeCCCChHHHHHHHHH
Confidence 6789999 599999999999999999999999999999999999877 555567888999999999999999999999
Q ss_pred cCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCCCCcc
Q psy13235 81 KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVDEK 133 (186)
Q Consensus 81 ~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~~ 133 (186)
+.+.++ .+++++.|||++|+|++||.++||+.|+.|+|+||..+|+++.+..
T Consensus 601 ~~dk~d-~~k~lv~llfetALlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~~ 652 (656)
T KOG0019|consen 601 ESDKND-TAKDLVEQLYETALISAGFSLDDPQTMVGRINRLLKSGLGRDEDEV 652 (656)
T ss_pred hcCcch-hHHHHHHHHHHHHHHHcCCCcCChHHHhhHHHHHHHHHhccCCCcc
Confidence 888766 8999999999999999999999999999999999999999987653
No 4
>KOG0020|consensus
Probab=100.00 E-value=9e-34 Score=260.82 Aligned_cols=139 Identities=58% Similarity=0.921 Sum_probs=128.5
Q ss_pred ccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhhcC
Q psy13235 3 IATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKD 82 (186)
Q Consensus 3 ~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~~~ 82 (186)
.+|.+ +|.+++||+||++|||+||++.||||++|+|||++|+++++.+++.+.|+.+|++|||||+||||+.|++++..
T Consensus 622 ~alkd-~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~a 700 (785)
T KOG0020|consen 622 KALKD-KIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIAA 700 (785)
T ss_pred hHHHH-HHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhhc
Confidence 35666 59999999999999999999999999999999999999888888777788899999999999999999999999
Q ss_pred CCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCCCCcccCCCCCCch
Q psy13235 83 DPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVDEKVEEDDDDIE 142 (186)
Q Consensus 83 d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~~~~~~~~~~~ 142 (186)
++.++.+++.|.++|.+|.|.+||.+.|+..|+.||+.+|.++|+|++|++++++.++++
T Consensus 701 deeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e~e~ee 760 (785)
T KOG0020|consen 701 DEEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEEIEEEE 760 (785)
T ss_pred CcccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCCccccccccccccc
Confidence 998999999999999999999999999999999999999999999999998877554443
No 5
>PTZ00130 heat shock protein 90; Provisional
Probab=99.98 E-value=9.9e-33 Score=266.51 Aligned_cols=131 Identities=36% Similarity=0.633 Sum_probs=114.8
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
||++||++ |++|++|+||++||||||++++|||++|+|||++|+ |+.+++.++..+|||||||+||||++|+.+.
T Consensus 636 ~k~~L~~~-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~----~~~~~~~~~~~k~iLEINp~Hpii~~L~~~~ 710 (814)
T PTZ00130 636 ISDTLRNQ-IFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINV----NNSDQIKAMSGQKILEINPDHPIMIDLLKRS 710 (814)
T ss_pred HHHHhcCc-ccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhh----ccccccccccCCeEEEECCCCHHHHHHHHHH
Confidence 47889995 999999999999999999999999999999999985 2221123556899999999999999998665
Q ss_pred cCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCCCCcccCC
Q psy13235 81 KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVDEKVEE 136 (186)
Q Consensus 81 ~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~~~~~ 136 (186)
..+.+++.++++|++|||+|+|++|+.++||++|++|+++||..+|+++.++++++
T Consensus 711 ~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~~~~~ 766 (814)
T PTZ00130 711 VSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNLKIDD 766 (814)
T ss_pred hcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence 44555566999999999999999999999999999999999999999999987776
No 6
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-25 Score=211.23 Aligned_cols=112 Identities=27% Similarity=0.506 Sum_probs=101.8
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
++++||+. |++|++|+||+++||||+.+..+++.+|+|+|++++ |. .+..++||||||+||||++|....
T Consensus 511 ~k~~L~~~-vk~Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~----~~-----~~~~k~ilEiNp~h~lv~~L~~~~ 580 (623)
T COG0326 511 VKEILGDK-VKDVRLSHRLTDSPACLTTDGADLSTQMERLLKAQG----QE-----VPESKKILEINPNHPLVKKLASLE 580 (623)
T ss_pred HHHHhcCc-cceeEeecccCCCcceeecCccchhHHHHHHHHhcc----cc-----CCccccceeeCcccHHHHHHHhcc
Confidence 46789995 999999999999999999999999999999999985 22 226899999999999999999874
Q ss_pred cCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhc
Q psy13235 81 KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTL 126 (186)
Q Consensus 81 ~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l 126 (186)
+.+.+++++++|||+|+|++|+.++||++|++|+|++|.+++
T Consensus 581 ----d~~~~~~~~~llydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 581 ----DEASVADLVELLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred ----cHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 456799999999999999999999999999999999999865
No 7
>PRK05218 heat shock protein 90; Provisional
Probab=99.92 E-value=2.3e-25 Score=211.41 Aligned_cols=113 Identities=31% Similarity=0.521 Sum_probs=99.7
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
++.+||+. |.+|++|.||+++||||+++++|++++|+|+|++|+ + .++..+++|||||+||||++|+...
T Consensus 501 ~~~~L~~~-v~~V~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~-~--------~~~~~~~~LeiNp~hplI~~L~~~~ 570 (613)
T PRK05218 501 LKEALGDK-VKDVRLSHRLTDSPACLVADEGDMSTQMEKLLKAAG-Q--------EVPESKPILEINPNHPLVKKLADEA 570 (613)
T ss_pred HHHHhcCc-ceEEEEeccCCCCCeEEEeCccchHHHHHHHHHhhh-h--------cccccceEEEEcCCCHHHHHHHhcc
Confidence 46789985 999999999999999999999999999999999874 1 2334789999999999999998742
Q ss_pred cCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcC
Q psy13235 81 KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLG 127 (186)
Q Consensus 81 ~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~ 127 (186)
+++.++.++++|||+|+|++|+.++||+.|++|+++||.++++
T Consensus 571 ----d~~~~~~~~~~Lyd~AlL~~G~~~~d~~~~~~r~~~ll~~~~~ 613 (613)
T PRK05218 571 ----DEAKFKDLAELLYDQALLAEGGSLEDPAAFVKRLNELLLKLLA 613 (613)
T ss_pred ----ChHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhhC
Confidence 2345999999999999999999999999999999999998764
No 8
>PRK14083 HSP90 family protein; Provisional
Probab=99.82 E-value=4.8e-20 Score=174.93 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=93.5
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChh-------h-hhhhccCcccccCCCCHH
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQ-------R-KYYLSQKKTMEVNPRHPL 72 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~-------~-~~~~~~kkiLEINP~HPL 72 (186)
|+++||+..|..|++|.||+++||||++++ +.+|+++|+++.-+ .+.. + +.++..+++|||||+|||
T Consensus 467 ~~~~L~~~~~~v~~~s~rl~~~Pa~~v~~e---~~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpl 541 (601)
T PRK14083 467 AREVLAPFGCDVVIRHFEPADLPALYLHDR---AAQHSREREEAVEE--ADDLWADILGSLDESQPAPRARLVLNLRNPL 541 (601)
T ss_pred HHHHhCccceEEEEEcCCCCCCCEEEEeCc---hhHHHHHHHhhhhh--cccchhhhhhhhhhcccccCeEEEECCCCHH
Confidence 467899964655688999999999999986 44677777643211 0100 0 123357899999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhhhhhhhhcCCCCcc--CHHHHHHHHHHHHHHhcCCC
Q psy13235 73 IRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQ--DSADFAKHVESMMRQTLGIS 129 (186)
Q Consensus 73 I~kL~~l~~~d~~~e~a~~la~lLyD~AlLs~G~~le--Dp~~F~~Rin~LL~~~l~~~ 129 (186)
|++|+.+ .+++.++.++++|||+|+|++|++++ +|..|+.++++||..+++-+
T Consensus 542 i~~l~~~----~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~~ 596 (601)
T PRK14083 542 VRRLATL----GDPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDAD 596 (601)
T ss_pred HHHHHhc----cChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999864 34667999999999999999998777 99999999999999888654
No 9
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=74.73 E-value=9.4 Score=30.58 Aligned_cols=53 Identities=19% Similarity=0.390 Sum_probs=41.7
Q ss_pred CHHHHHHHHhhcCCCCcHHHHHHHHhhhhhh---hhcCCC--CccCHHHHHHHHHHHHHHh
Q psy13235 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTA---TLRSGF--MLQDSADFAKHVESMMRQT 125 (186)
Q Consensus 70 HPLI~kL~~l~~~d~~~e~a~~la~lLyD~A---lLs~G~--~leDp~~F~~Rin~LL~~~ 125 (186)
||.|+.+.++++. +..+..++.+.|++. .--.|. .+.|-..|..-+|.+|..+
T Consensus 2 ~p~vqefk~lIe~---dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~A 59 (141)
T PF12588_consen 2 HPVVQEFKDLIES---DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTA 59 (141)
T ss_pred ChHHHHHHHHHhc---CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhC
Confidence 8999999999844 467899999999991 122343 5789999999999999864
No 10
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=73.46 E-value=4.2 Score=32.91 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=26.5
Q ss_pred cCcccccCCCCHHHHHHHHhhcCCCCcHH---------HHHHHHhhhhh
Q psy13235 60 QKKTMEVNPRHPLIRELYRRVKDDPEDAK---------ATEIATMMFQT 99 (186)
Q Consensus 60 ~kkiLEINP~HPLI~kL~~l~~~d~~~e~---------a~~la~lLyD~ 99 (186)
.-|.=+.+|+||||++|..+...+-.++. +=.+|++.||.
T Consensus 12 QgRLE~d~p~~plv~~~~~L~q~Nms~~~y~~a~r~YLVFL~Aq~~Yd~ 60 (147)
T PF06112_consen 12 QGRLEADYPNHPLVAKLQALPQNNMSDAEYREAQRNYLVFLIAQHCYDQ 60 (147)
T ss_pred eceecccCCCCHHHHHHHhhccCCCCHHHHHHhhhchhhhhhHHHHHHH
Confidence 33556799999999999988655443332 22456666665
No 11
>KOG1824|consensus
Probab=50.76 E-value=38 Score=35.35 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCCCCcccCCCCCCchhhhccCCCCCcccccccCCCC
Q psy13235 84 PEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVDEKVEEDDDDIEEEEGAGDTEPSLQMEEITDDE 163 (186)
Q Consensus 84 ~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (186)
.+++.+.+.+-|-|+.-+... +.+...|..-+..++...+..|++..-+.+ +.+.+...+|++.+++-+|=+|+|
T Consensus 268 ~~dDELrE~~lQale~fl~rc---p~ei~p~~pei~~l~l~yisYDPNy~yd~~--eDed~~~~ed~eDde~~deYsDDe 342 (1233)
T KOG1824|consen 268 EDDDELREYCLQALESFLRRC---PKEILPHVPEIINLCLSYISYDPNYNYDTE--EDEDAMFLEDEEDDEQDDEYSDDE 342 (1233)
T ss_pred cCcHHHHHHHHHHHHHHHHhC---hhhhcccchHHHHHHHHHhccCCCCCCCCc--cchhhhhhhccccchhcccccccc
Confidence 346678888888888766665 688888999999999999999987633332 122222223444444567777777
Q ss_pred ccc
Q psy13235 164 PQT 166 (186)
Q Consensus 164 ~~~ 166 (186)
...
T Consensus 343 D~S 345 (1233)
T KOG1824|consen 343 DMS 345 (1233)
T ss_pred chh
Confidence 654
No 12
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=47.17 E-value=6.3 Score=33.80 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=36.8
Q ss_pred eccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 15 ISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 15 vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
|-+|.-.--..||....-+|.-..|+|-.. =+-.-.......++-.|||.|||-+.|-..+
T Consensus 86 V~kRV~EGMGLiVLHSGHfSKiFkRLMGTp-----C~LKWREAgErERvWvvnp~HPIA~GigE~~ 146 (261)
T COG4813 86 VQKRVWEGMGLIVLHSGHFSKIFKRLMGTP-----CALKWREAGERERVWVVNPGHPIAEGIGESF 146 (261)
T ss_pred HHHHHhcccceEEEeccchhHHHHHHcCCc-----cccchhhcCcceeEEEeCCCCchhhcchhhE
Confidence 346777777788887656664444443211 0100001223569999999999999996544
No 13
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=45.53 E-value=12 Score=37.25 Aligned_cols=18 Identities=39% Similarity=0.922 Sum_probs=14.1
Q ss_pred ccccc-CCCCHHHHHHHHh
Q psy13235 62 KTMEV-NPRHPLIRELYRR 79 (186)
Q Consensus 62 kiLEI-NP~HPLI~kL~~l 79 (186)
+-+|+ ||||||.|+|+.-
T Consensus 468 rL~ELsnpNhPLLkkll~E 486 (700)
T COG1480 468 RLLELSNPNHPLLKKLLTE 486 (700)
T ss_pred hHHHhcCCCcHHHHHHHhh
Confidence 45554 9999999999853
No 14
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=41.01 E-value=27 Score=23.21 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.3
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|...+.-+++++++.+.+.+.++++.+.
T Consensus 8 l~~grt~eqk~~l~~~it~~l~~~lg~p~~~ 38 (64)
T PRK01964 8 LLEGRPEEKIKNLIREVTEAISATLDVPKER 38 (64)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHhCcChhh
Confidence 5568788999999999999999999998765
No 15
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.88 E-value=59 Score=25.61 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=34.8
Q ss_pred ccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhhc
Q psy13235 18 RLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVK 81 (186)
Q Consensus 18 RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~~ 81 (186)
|-....|+++--+...+....||-+.. ++.+|..|-|+|++.+.|+.++.
T Consensus 53 R~k~~~aa~a~v~~~a~~aI~rIr~IH--------------PPAHiIVIs~r~dvy~el~~~fg 102 (125)
T COG1844 53 RKKCKVAAVAEVEEPASKAIGRIRKIH--------------PPAHIIVISPRHDVYKELLRLFG 102 (125)
T ss_pred hcccchhheeeecCccHHHHHHHHhcC--------------CCceEEEeCCCchHHHHHHHHhc
Confidence 333344455544556676666666543 46689999999999999998874
No 16
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=34.25 E-value=12 Score=22.24 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=12.7
Q ss_pred CcccccCCCCHHHHHHH
Q psy13235 61 KKTMEVNPRHPLIRELY 77 (186)
Q Consensus 61 kkiLEINP~HPLI~kL~ 77 (186)
++.+|+||+++..-.-+
T Consensus 3 ~kAie~~P~n~~a~~nl 19 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNL 19 (34)
T ss_pred HHHHHHCCCCHHHHHHH
Confidence 36789999999875544
No 17
>smart00162 SAPA Saposin/surfactant protein-B A-type DOMAIN. Present as four and three degenerate copies, respectively, in prosaposin and surfactant protein B. Single copies in acid sphingomyelinase, NK-lysin amoebapores and granulysin. Putative phospholipid membrane binding domains.
Probab=32.05 E-value=14 Score=22.82 Aligned_cols=17 Identities=29% Similarity=0.774 Sum_probs=14.3
Q ss_pred ccccccccCccchhhcc
Q psy13235 165 QTTCVQCEGLNHCITKR 181 (186)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
.+||++|..+.||+..-
T Consensus 16 ~~~A~~C~Av~hC~~~V 32 (34)
T smart00162 16 LETASQCNAVKHCLQRV 32 (34)
T ss_pred HHHHHHcCchhHHHhhc
Confidence 46899999999998753
No 18
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=31.53 E-value=57 Score=21.26 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=26.0
Q ss_pred CCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 104 SGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 104 ~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
.|...+.-+.|++.+.+.|...+|++.+.
T Consensus 10 ~grt~eqK~~l~~~it~~l~~~lg~~~~~ 38 (63)
T TIGR00013 10 EGRTDEQKRQLIEGVTEAMAETLGANLES 38 (63)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 67788899999999999999999998765
No 19
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=30.84 E-value=50 Score=21.50 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=26.6
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|.+.+.-+++++++.+.+.+.++++.+.
T Consensus 8 ~~~grs~eqk~~l~~~it~~l~~~~~~p~~~ 38 (62)
T PRK00745 8 LFEGRTVEQKRKLVEEITRVTVETLGCPPES 38 (62)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 4567788889999999999999999998765
No 20
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=30.34 E-value=51 Score=24.56 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=38.9
Q ss_pred cccccCCCCHHHHHHHHhhcCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 62 KTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 62 kiLEINP~HPLI~kL~~l~~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
-++.+.|+++++-. +.+++ ..|=.-.+..|...+.-.+|+++|.++|.+.||++++.
T Consensus 39 ~~v~~~~~~~m~f~-------g~~~p-------~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~r 95 (116)
T PTZ00397 39 IMSGYDYQKHMRFG-------GSHDG-------CCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSER 95 (116)
T ss_pred EEEEEeCCceEEEC-------CCCCc-------eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 46778888887643 11111 12222223355677888999999999999999999875
No 21
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=30.21 E-value=62 Score=20.58 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=26.8
Q ss_pred hhcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 101 TLRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 101 lLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
.+..|...+.-+.+++.+.+.+.+.+|++.+.
T Consensus 6 ~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~ 37 (58)
T cd00491 6 YILEGRTDEQKRELIERVTEAVSEILGAPEAT 37 (58)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 35667778888999999999999999998654
No 22
>PF02199 SapA: Saposin A-type domain; InterPro: IPR003119 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ]. The saposin A-type domain may play a role in targeting, as propeptides containing the saposin A-type domain of the C terminus of prosaposin and of the N-terminal part of pulmonary surfactant-associated protein B are involved in the transport to the lysosome and to secretory granules (lamellar bodies, which are lysosomal-like organelles), respectively [].
Probab=30.14 E-value=12 Score=22.96 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=15.0
Q ss_pred ccccccccCccchhhccc
Q psy13235 165 QTTCVQCEGLNHCITKRF 182 (186)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~ 182 (186)
.+||++|.-+.||+.+-.
T Consensus 16 ~~~A~~CgA~~hC~~~vW 33 (34)
T PF02199_consen 16 LETAKECGAVKHCQQHVW 33 (34)
T ss_pred HHHHHHcCHHHHHHHhhc
Confidence 578999999999987643
No 23
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=29.92 E-value=1.6e+02 Score=20.92 Aligned_cols=28 Identities=4% Similarity=0.232 Sum_probs=19.8
Q ss_pred hhhhhhcCCCCccCHHHHHHHHHHHHHH
Q psy13235 97 FQTATLRSGFMLQDSADFAKHVESMMRQ 124 (186)
Q Consensus 97 yD~AlLs~G~~leDp~~F~~Rin~LL~~ 124 (186)
-+++||.+|.++++...+..-=-.++..
T Consensus 37 ~Eq~Li~eG~~~eeiq~LCdvH~~lf~~ 64 (71)
T PF04282_consen 37 AEQELIQEGMPVEEIQKLCDVHAALFKG 64 (71)
T ss_pred HHHHHHHcCCCHHHHHHHhHHHHHHHHH
Confidence 4788999999888877776544444443
No 24
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=28.38 E-value=58 Score=21.12 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=26.8
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|.+.+.-+++++++...+...++++.+.
T Consensus 8 ~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~ 38 (61)
T PRK02220 8 LIEGRTEEQLKALVKDVTAAVSKNTGAPAEH 38 (61)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcChhh
Confidence 4568888999999999999999999998754
No 25
>KOG3046|consensus
Probab=28.15 E-value=1.4e+02 Score=24.17 Aligned_cols=43 Identities=9% Similarity=0.157 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCC
Q psy13235 87 AKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGIS 129 (186)
Q Consensus 87 e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~ 129 (186)
..+..+...+++.+++.+-|.+.-+.+..+|+|.|+...-.++
T Consensus 19 ~~le~~~e~~~~Lgl~vs~F~~tsq~~L~qrl~tLv~~L~~l~ 61 (147)
T KOG3046|consen 19 NSLEKFLENFRQLGLIVSNFQPTSQDALNQRLNTLVRGLQDLD 61 (147)
T ss_pred HHHHHHHHHHHHHhHhhhcCCCCcHHHHHHHHHHHHHHhhhhH
Confidence 3467788999999999999999999999999999988654443
No 26
>COG4463 CtsR Transcriptional repressor of class III stress genes [Transcription]
Probab=26.73 E-value=59 Score=26.41 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=34.3
Q ss_pred cccCCCCHHHHHHHHhhcCCCCcHHHHHHHHhhhhhhhhcCC
Q psy13235 64 MEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSG 105 (186)
Q Consensus 64 LEINP~HPLI~kL~~l~~~d~~~e~a~~la~lLyD~AlLs~G 105 (186)
.+.|-+|.+|..|..+..+.-..+.+.++...|||.-+|.+-
T Consensus 73 v~~~~~~~~i~~l~~~I~~~iSq~~~~dII~~Lfde~liter 114 (153)
T COG4463 73 VEYSDNHELINALLQLIGKSISQQAAEDIIQLLFDEKLITER 114 (153)
T ss_pred ecccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Confidence 577889999999999886554556788999999999888763
No 27
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=25.38 E-value=1.2e+02 Score=23.37 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=33.0
Q ss_pred CceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhhc
Q psy13235 22 SPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVK 81 (186)
Q Consensus 22 sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~~ 81 (186)
.-||++.=+...+...-|+.+.. ++-+|..|-|+|+....|.+.+.
T Consensus 56 k~A~lv~v~~~~~~aI~~lrkIH--------------PPAHIiVis~~~~~y~eL~~~~~ 101 (107)
T PF04009_consen 56 KAAALVKVEEDATKAIDRLRKIH--------------PPAHIIVISPRHDVYEELLEMFG 101 (107)
T ss_pred chheEEEecCCchhHHHHHhhcC--------------CCceEEEECCCchHHHHHHHHhh
Confidence 34555555556666666666553 46699999999999999998763
No 28
>PRK10045 acyl carrier protein phosphodiesterase; Provisional
Probab=24.16 E-value=1.7e+02 Score=24.48 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHhhcCCCCcHHHHHHHHhhhhhhhhcC--CCCcc-CHHHHHHHHHHHHHHh
Q psy13235 67 NPRHPLIRELYRRVKDDPEDAKATEIATMMFQTATLRS--GFMLQ-DSADFAKHVESMMRQT 125 (186)
Q Consensus 67 NP~HPLI~kL~~l~~~d~~~e~a~~la~lLyD~AlLs~--G~~le-Dp~~F~~Rin~LL~~~ 125 (186)
==.||+++....++... -.--+--+..+.||--|... -+... ....|+.++++.|..-
T Consensus 52 TD~Hp~~~~~~~~~~~~-~rr~agI~~Di~~DHfLA~~W~~~~~~~~L~~F~~~~y~~l~~~ 112 (193)
T PRK10045 52 TDNLPEVREAREWFRSE-TRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTI 112 (193)
T ss_pred hcCCHHHHHHHHhcCcc-cccchHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc
Confidence 34799999998876322 12235567788888877665 34444 7889999999998754
No 29
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.88 E-value=1.5e+02 Score=23.01 Aligned_cols=44 Identities=5% Similarity=0.227 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhhhhhhcCCCC-ccCHHHHHHHHHHHHHHhcCCCC
Q psy13235 87 AKATEIATMMFQTATLRSGFM-LQDSADFAKHVESMMRQTLGISV 130 (186)
Q Consensus 87 e~a~~la~lLyD~AlLs~G~~-leDp~~F~~Rin~LL~~~l~~~~ 130 (186)
..+++++..||+...+.+.|. ...-..+..+|+.|...+-.++.
T Consensus 3 ~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~ 47 (128)
T PF09748_consen 3 QQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDK 47 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999997 78889999999999886644443
No 30
>KOG0547|consensus
Probab=21.74 E-value=98 Score=30.22 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=42.4
Q ss_pred CcccccCCCCHHHHHHHHhhcCCCCcHHHHHHHHhhhhhh--hhcCCCCccCHHHHHHHHHHHHH
Q psy13235 61 KKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTA--TLRSGFMLQDSADFAKHVESMMR 123 (186)
Q Consensus 61 kkiLEINP~HPLI~kL~~l~~~d~~~e~a~~la~lLyD~A--lLs~G~~leDp~~F~~Rin~LL~ 123 (186)
.+-|||||+| ++.|+++.. ..+.+.....-|||.. +|..||.-....-|+.|+-+...
T Consensus 173 TkALEl~P~Y--~KAl~RRA~---A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 173 TKALELNPDY--VKALLRRAS---AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred HHHhhcCcHH--HHHHHHHHH---HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence 3679999998 577777642 2456778888888875 46678877777888888766554
No 31
>KOG3241|consensus
Probab=20.03 E-value=2.3e+02 Score=24.13 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=12.4
Q ss_pred hhhhhcCCCCccCHHHHHHHHHHHH
Q psy13235 98 QTATLRSGFMLQDSADFAKHVESMM 122 (186)
Q Consensus 98 D~AlLs~G~~leDp~~F~~Rin~LL 122 (186)
|...|.+-|+-.....|+..+-+.+
T Consensus 156 d~~~~~~~~~s~~~~~~~~~~~~~~ 180 (227)
T KOG3241|consen 156 DSSKVGDVFPSTSLEEYANKSGRVS 180 (227)
T ss_pred chhhhcccccchhHHHHHhhhcchh
Confidence 4444555555455555555444443
Done!