Query psy13235
Match_columns 186
No_of_seqs 131 out of 1063
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:37:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sf8_A Chaperone protein HTPG; 100.0 2.3E-39 8E-44 251.9 8.7 109 1-123 17-125 (126)
2 3q6m_A Heat shock protein HSP 100.0 8.1E-39 2.8E-43 291.9 8.9 132 1-136 285-416 (448)
3 3hjc_A Heat shock protein 83-1 100.0 3.6E-36 1.2E-40 274.5 10.7 127 1-131 301-427 (444)
4 2cge_A ATP-dependent molecular 100.0 1.7E-33 5.8E-38 254.5 11.2 123 1-127 282-405 (405)
5 2o1u_A Endoplasmin; GRP94, HSP 100.0 1.6E-33 5.5E-38 267.5 10.3 131 1-132 534-665 (666)
6 2cg9_A ATP-dependent molecular 100.0 4.3E-32 1.5E-36 258.1 3.7 123 1-127 554-677 (677)
7 2ioq_A Chaperone protein HTPG; 100.0 1.8E-29 6.1E-34 238.5 6.2 109 1-123 515-623 (624)
8 2ca6_A RAN GTPase-activating p 64.9 2.7 9.3E-05 35.2 1.9 17 108-124 315-331 (386)
9 3abf_A 4-oxalocrotonate tautom 45.8 15 0.00051 22.9 2.6 31 102-132 8-38 (64)
10 2opa_A Probable tautomerase YW 41.9 18 0.0006 22.3 2.5 31 102-132 7-37 (61)
11 1otf_A 4-oxalocrotonate tautom 39.6 20 0.00067 22.1 2.5 31 102-132 7-37 (62)
12 3ry0_A Putative tautomerase; o 38.5 21 0.00071 22.6 2.5 31 102-132 7-37 (65)
13 3m20_A 4-oxalocrotonate tautom 37.6 27 0.00091 22.0 2.9 29 104-132 8-36 (62)
14 2x4k_A 4-oxalocrotonate tautom 37.5 22 0.00076 21.6 2.5 31 102-132 10-40 (63)
15 3mb2_A 4-oxalocrotonate tautom 32.2 29 0.001 22.5 2.5 31 102-132 8-38 (72)
16 3m21_A Probable tautomerase HP 31.4 28 0.00097 22.2 2.3 28 105-132 13-40 (67)
17 3ej9_A Alpha-subunit of trans- 26.9 40 0.0014 22.3 2.4 31 102-132 8-38 (76)
18 2xcz_A Possible ATLS1-like lig 26.7 44 0.0015 23.4 2.8 31 102-132 64-94 (115)
19 2wkb_A Macrophage migration in 25.9 44 0.0015 24.0 2.7 31 102-132 64-94 (125)
20 1hfo_A Migration inhibitory fa 25.6 40 0.0014 23.5 2.4 31 102-132 63-93 (113)
21 3b64_A Macrophage migration in 25.6 48 0.0017 23.1 2.8 31 102-132 64-94 (112)
22 1uiz_A MIF, macrophage migrati 25.4 41 0.0014 23.6 2.4 31 102-132 64-94 (115)
23 2os5_A Acemif; macrophage migr 25.2 43 0.0015 23.7 2.5 33 100-132 62-94 (119)
24 2lmd_A Prospero homeobox prote 24.0 2.7E+02 0.0091 22.0 7.3 78 35-124 70-153 (174)
25 2oqp_A Interleukin-21, IL-21, 23.9 55 0.0019 25.1 2.9 41 86-126 65-120 (134)
26 1gyx_A YDCE, B1461, hypothetic 23.0 53 0.0018 21.5 2.5 31 102-132 7-38 (76)
27 3mkr_A Coatomer subunit epsilo 22.8 45 0.0015 26.7 2.5 16 62-77 260-275 (291)
28 4dh4_A MIF; trimer, isomerase; 21.5 56 0.0019 23.0 2.5 32 101-132 63-94 (114)
29 4ga2_A E3 SUMO-protein ligase 20.6 30 0.001 24.6 0.8 18 61-78 124-141 (150)
30 3mv2_B Coatomer subunit epsilo 20.5 54 0.0019 27.9 2.6 19 61-79 277-295 (310)
No 1
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=100.00 E-value=2.3e-39 Score=251.87 Aligned_cols=109 Identities=19% Similarity=0.332 Sum_probs=99.1
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
||++||++ |++|++|+||++||||||++++|||++|||||++|+ | .++..||||||||+||||++|++.
T Consensus 17 ~K~~L~dk-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~----~-----~~~~~k~~LEINp~HplIk~L~~~- 85 (126)
T 1sf8_A 17 VKALLGER-VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG----Q-----KVPEVKYIFELNPDHVLVKRAADT- 85 (126)
T ss_dssp HHHHHGGG-SSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTT----S-----CCCCCCCEEEECTTSHHHHHHHHC-
T ss_pred HHHHhcCc-ccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhc----c-----ccccCCeeeeECCCCHHHHHHHHh-
Confidence 47899995 999999999999999999999999999999999984 2 234689999999999999999763
Q ss_pred cCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHH
Q psy13235 81 KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMR 123 (186)
Q Consensus 81 ~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~ 123 (186)
.+++.++++|++|||+|+|++||.++||+.|++|+|+||.
T Consensus 86 ---~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 86 ---EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred ---cChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 3467799999999999999999999999999999999985
No 2
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=8.1e-39 Score=291.85 Aligned_cols=132 Identities=33% Similarity=0.628 Sum_probs=104.4
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
||++||++ |++|++|+||++||||||++++|||++||||||+|+++ +.++++++..||||||||+||||++|.++.
T Consensus 285 ~K~~L~~k-V~~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~---d~~~~~~~~~kk~LEINp~Hpli~~L~~~~ 360 (448)
T 3q6m_A 285 MKDILEKK-VEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALR---DNSTMGYMAAKKHLEINPDHSIIETLRQKA 360 (448)
T ss_dssp HHHHTGGG-CSEEEECSSCSSSSEEEEECSSSCCHHHHHHCCC-----------------CEEEEECTTCHHHHHHHHHH
T ss_pred HHHHhcCc-ceEEEecCCCCCCCeEEEeCCcchhHHHHHHHHHhhcc---ccccccccccCceeEECCCCHHHHHHHHHh
Confidence 57899995 99999999999999999999999999999999998754 444345677899999999999999999987
Q ss_pred cCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCCCCcccCC
Q psy13235 81 KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVDEKVEE 136 (186)
Q Consensus 81 ~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~~~~~ 136 (186)
..+.+++.++++|++|||+|+|++|+.++||+.|++|||+||.++||++.++++++
T Consensus 361 ~~d~~~~~~~~~~~lLyd~AlL~~G~~l~DP~~f~~ri~~ll~~~L~id~~~~~~~ 416 (448)
T 3q6m_A 361 EADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTAD 416 (448)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHTTC---------
T ss_pred hcccchhHHHHHHHHHHHhHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence 77767788999999999999999999999999999999999999999998765543
No 3
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=3.6e-36 Score=274.50 Aligned_cols=127 Identities=40% Similarity=0.732 Sum_probs=108.1
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
||++||++ |++|+||+||++||||||++++|||++|||||++|+++ ++++.+++..+|||||||+||||++|+.+.
T Consensus 301 ~K~~L~~k-V~~V~vS~RL~~sP~~lv~~e~g~s~~Merimka~~~~---~~~~~~~~~~k~~LEINp~Hpli~~L~~~~ 376 (444)
T 3hjc_A 301 MKEVLGDK-VEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALR---DSSMAQYMMSKKTMELNPRHPIIKELRRRV 376 (444)
T ss_dssp HHHHHGGG-CSEEEECSSCSSSSEEEEBCSSSBCHHHHHHHHHC-----------CTTBCCCEEEECTTSHHHHHHHHHH
T ss_pred HHHHhcCc-ceEEEecCCCCCCCeEEEcCCccccHHHHHHHHHhccc---ccccccccccCeeEEECCCCHHHHHHHHHh
Confidence 47889995 99999999999999999999999999999999998743 322234667899999999999999999988
Q ss_pred cCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCCCC
Q psy13235 81 KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVD 131 (186)
Q Consensus 81 ~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~ 131 (186)
..+.+++.++++|++|||+|+|++|+.++||+.|++|+|+||.++||++.+
T Consensus 377 ~~d~~~~~~~~l~~lLyd~AlL~~G~~ledp~~f~~ri~~ll~~~l~~~~~ 427 (444)
T 3hjc_A 377 GADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEE 427 (444)
T ss_dssp HTC-CCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHHHHC----
T ss_pred hcCcchHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCcc
Confidence 777778899999999999999999999999999999999999999999875
No 4
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=254.52 Aligned_cols=123 Identities=33% Similarity=0.659 Sum_probs=108.7
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
||++||++ |++|++|+||++||||||++++|||++|||||++|+++ +.++.+++..++||||||+||||++|+.+.
T Consensus 282 ~k~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~s~~mer~~k~~~~~---~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~ 357 (405)
T 2cge_A 282 LKEILGDQ-VEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALR---DSSMSSYMSSKKTFEISPKSPIIKELKKRV 357 (405)
T ss_dssp HHHHHTTS-CSEEEECSSCCSSSEEEEECSSSCCHHHHHHHHHHHTT---SSSCCCCCCCCEEEEECTTSHHHHHHHHHH
T ss_pred HHHHhcCc-ceEEEEEeccCCCCeEEEeccccccHHHHHHHHHhhcc---ccccccccccCeeEEEcCCCHHHHHHHHhh
Confidence 47889995 99999999999999999999999999999999998754 322234567899999999999999999876
Q ss_pred cCC-CCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcC
Q psy13235 81 KDD-PEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLG 127 (186)
Q Consensus 81 ~~d-~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~ 127 (186)
..+ .+++.++++|++|||+|+|++|+.++||+.|++|+|+||.++||
T Consensus 358 ~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~dp~~f~~r~~~ll~~~l~ 405 (405)
T 2cge_A 358 DEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 405 (405)
T ss_dssp TTTGGGCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred hccccCHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcC
Confidence 544 45678999999999999999999999999999999999998775
No 5
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=1.6e-33 Score=267.52 Aligned_cols=131 Identities=48% Similarity=0.855 Sum_probs=110.9
Q ss_pred Cccc-ccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHh
Q psy13235 1 MRIA-TGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRR 79 (186)
Q Consensus 1 ~~~~-Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l 79 (186)
||++ ||++ |++|++|+||++||||||++++|||++|||||++|+++..++.++.+++..+|||||||+||||++|+.+
T Consensus 534 ~k~~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~ 612 (666)
T 2o1u_A 534 MKDKALKDK-IEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRR 612 (666)
T ss_dssp HHHTTTTTT-EEEEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHH
T ss_pred HHhccCCCc-eeEEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHh
Confidence 4667 9995 9999999999999999999999999999999999975310022223456789999999999999999887
Q ss_pred hcCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 80 VKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 80 ~~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
...+.+++.++++|++|||+|+|++|+.++||+.|++|+|+||.++|+++.++
T Consensus 613 ~~~~~~~~~~~~~~~~l~d~All~~G~~~~dp~~f~~r~~~ll~~~l~~~~~~ 665 (666)
T 2o1u_A 613 VKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDA 665 (666)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSCC----
T ss_pred hhcccchHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCccC
Confidence 65555677899999999999999999999999999999999999999987643
No 6
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-32 Score=258.07 Aligned_cols=123 Identities=33% Similarity=0.659 Sum_probs=100.6
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
||++||++ |.+|++|+||++||||||++++|||++|+|||++|+++ +.++.+++..++||||||+||||++|+.+.
T Consensus 554 ~k~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~---d~~~~~~~~~k~~LeiNp~hpli~~L~~~~ 629 (677)
T 2cg9_A 554 LKEILGDQ-VEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALR---DSSMSSYMSSKKTFEISPKSPIIKELKKRV 629 (677)
T ss_dssp HHHTTCSS-CSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC----------------CEEEECTTCHHHHHHHHHH
T ss_pred HHHhcCCc-ceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhcc---ccccccccccCceEEEcCCCHHHHHHHHhh
Confidence 47889995 99999999999999999999999999999999998643 333335667899999999999999998876
Q ss_pred cCC-CCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHHHhcC
Q psy13235 81 KDD-PEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLG 127 (186)
Q Consensus 81 ~~d-~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~~~l~ 127 (186)
..+ .+++.++++|++|||+|+|++|+.++||+.|++|+|+||.++||
T Consensus 630 ~~d~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~~l~ 677 (677)
T 2cg9_A 630 DEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677 (677)
T ss_dssp HTCCSSCSSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSSSCC
T ss_pred hccccCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC
Confidence 544 45667899999999999999999999999999999999986654
No 7
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.95 E-value=1.8e-29 Score=238.48 Aligned_cols=109 Identities=19% Similarity=0.333 Sum_probs=81.5
Q ss_pred CcccccCCcccEEEeccccCCCceEEEecCCCccHHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhh
Q psy13235 1 MRIATGASMIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV 80 (186)
Q Consensus 1 ~~~~Lgd~~V~~V~vS~RL~~sPa~lv~~e~g~S~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~ 80 (186)
||++||++ |.+|++|+||++||||||++++|||++|+|||++|+ | .++..+++|||||+||||++|..
T Consensus 515 ~k~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~~----~-----~~~~~~~~LeiN~~hpli~~L~~-- 582 (624)
T 2ioq_A 515 VKALLGER-VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG----Q-----KVPEVKYIFELNPDHVLVKRAAD-- 582 (624)
T ss_dssp HHHHSSSS-SSEEEECCCCSSCCEEEECCC------------------------------CCEEEECTTCHHHHTTTS--
T ss_pred HHHhhcCC-ceEEEEeecCCCCcEEEEecCcCcCHHHHHHHHHhh----h-----cccccCceEEECCCCHHHHHHHh--
Confidence 47889995 999999999999999999999999999999999975 1 24568999999999999999964
Q ss_pred cCCCCcHHHHHHHHhhhhhhhhcCCCCccCHHHHHHHHHHHHH
Q psy13235 81 KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMR 123 (186)
Q Consensus 81 ~~d~~~e~a~~la~lLyD~AlLs~G~~leDp~~F~~Rin~LL~ 123 (186)
..+++.++++|++|||+|+|++|++++||+.|++|+|+||.
T Consensus 583 --~~~~~~~~~~~~~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 583 --TEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred --hcCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 23567799999999999999999999999999999999986
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=64.88 E-value=2.7 Score=35.24 Aligned_cols=17 Identities=6% Similarity=0.341 Sum_probs=10.3
Q ss_pred ccCHHHHHHHHHHHHHH
Q psy13235 108 LQDSADFAKHVESMMRQ 124 (186)
Q Consensus 108 leDp~~F~~Rin~LL~~ 124 (186)
+.+...|+..+.+++.+
T Consensus 315 l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 315 FSEEDDVVDEIREVFST 331 (386)
T ss_dssp SCTTSHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHhhh
Confidence 44555566677666664
No 9
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=45.79 E-value=15 Score=22.87 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=26.3
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|...+..++|++++.+++.+.+|++.+.
T Consensus 8 ~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~ 38 (64)
T 3abf_A 8 LLEGRPPEKKRELVRRLTEMASRLLGEPYEE 38 (64)
T ss_dssp EETTCCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 4567777888999999999999999998764
No 10
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=41.92 E-value=18 Score=22.29 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=26.6
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|.+.+.-++|++.+.++|.+.+|++.+.
T Consensus 7 ~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~ 37 (61)
T 2opa_A 7 MLEGRTDEQKRNLVEKVTEAVKETTGASEEK 37 (61)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 4567788888999999999999999998754
No 11
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=39.62 E-value=20 Score=22.05 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=26.7
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|.+.+.-+++++.+.+.|.+.+|++.+.
T Consensus 7 ~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~ 37 (62)
T 1otf_A 7 IIEGRTDEQKETLIRQVSEAMANSLDAPLER 37 (62)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 4567788888999999999999999998754
No 12
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=38.50 E-value=21 Score=22.63 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.3
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
|..|.+.+.-.+++..+.+.|.+.+|++.+.
T Consensus 7 ~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~ 37 (65)
T 3ry0_A 7 LLEGRSPQEVAALGEALTAAAHETLGTPVEA 37 (65)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 5578888899999999999999999998764
No 13
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=37.57 E-value=27 Score=22.03 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=26.3
Q ss_pred CCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 104 SGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 104 ~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
.|.+.+.-++|++++.+.+.+.+|++.+.
T Consensus 8 ~grt~eqK~~L~~~it~~~~~~lg~~~~~ 36 (62)
T 3m20_A 8 PKLDVGKKREFVERLTSVAAEIYGMDRSA 36 (62)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 67888999999999999999999998765
No 14
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=37.48 E-value=22 Score=21.61 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=26.1
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|...+..+++++.+.+.|.+.+|++.+.
T Consensus 10 ~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~ 40 (63)
T 2x4k_A 10 LLEGRSDEQLKNLVSEVTDAVEKTTGANRQA 40 (63)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 4557777778999999999999999998754
No 15
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=32.23 E-value=29 Score=22.48 Aligned_cols=31 Identities=13% Similarity=0.301 Sum_probs=27.2
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|.+.+.-.++++.+.+.+.+.+|++.+.
T Consensus 8 ~~~grs~eqK~~L~~~it~~l~~~lg~p~~~ 38 (72)
T 3mb2_A 8 MLEGRSTEQKAELARALSAAAAAAFDVPLAE 38 (72)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 4578888889999999999999999998765
No 16
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=31.35 E-value=28 Score=22.16 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=25.3
Q ss_pred CCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 105 GFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 105 G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
|.+.+.-++|++.+.+.|.+.+|++.+.
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~~ 40 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKAS 40 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCccc
Confidence 7788889999999999999999998765
No 17
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=26.93 E-value=40 Score=22.30 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=27.3
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|.+.+.-..++..+.+.+...+|++.+.
T Consensus 8 ~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~ 38 (76)
T 3ej9_A 8 MRYGRTDEQKRALSAGLLRVISEATGEPREN 38 (76)
T ss_dssp EETTCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHCcCccc
Confidence 5568888999999999999999999998765
No 18
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=26.71 E-value=44 Score=23.42 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.9
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|...+.-++|++++.++|.+.||++++.
T Consensus 64 ~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (115)
T 2xcz_A 64 SIGALDGSRTQEVSELVCGHIEQNLGIPADR 94 (115)
T ss_dssp ESSCCCTTHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 3457788899999999999999999998865
No 19
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=25.94 E-value=44 Score=23.97 Aligned_cols=31 Identities=10% Similarity=0.212 Sum_probs=23.4
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|...+.-++|++++.++|.+.||++++.
T Consensus 64 ~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (125)
T 2wkb_A 64 SIGGINRSNNSLLADKITKILSNHLSVKPRR 94 (125)
T ss_dssp CC-----CTHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 3456788999999999999999999998865
No 20
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=25.60 E-value=40 Score=23.50 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=26.9
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|...+.-++|++++.++|.+.||++++.
T Consensus 63 ~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 93 (113)
T 1hfo_A 63 SIGGIEPSRNRDHSAKLFDHLNTKLGIPKNR 93 (113)
T ss_dssp ESSSCSHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EecCCCHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 4557788888999999999999999998865
No 21
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=25.59 E-value=48 Score=23.11 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=26.6
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|...+.-++|++.+.++|.+.||++++.
T Consensus 64 ~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (112)
T 3b64_A 64 ALGGYGPSEPEKVTSIVTAAITKECGIVADR 94 (112)
T ss_dssp CTTCCCTTHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 3446788889999999999999999998864
No 22
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=25.38 E-value=41 Score=23.56 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=27.0
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
+..|...+.-++|++++.++|.+.||++++.
T Consensus 64 ~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (115)
T 1uiz_A 64 SIGKIGGPQNKSYTKLLCDILTKQLNIPANR 94 (115)
T ss_dssp ESSCCSHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EecCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 4557788888999999999999999998865
No 23
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=25.23 E-value=43 Score=23.73 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=27.9
Q ss_pred hhhcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 100 ATLRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 100 AlLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
..+..|...+.-++|++++.++|.+.||++++.
T Consensus 62 I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (119)
T 2os5_A 62 VESIGALSADDNIRHTQKITQFCQDTLKLPKDK 94 (119)
T ss_dssp EEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 334557788889999999999999999998865
No 24
>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}
Probab=23.99 E-value=2.7e+02 Score=21.95 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhcccCCChhhhhhhccCcccccCCCCHHHHHHHHhhcCCCC---cHHHHHHHH---hhhhhhhhcCCCCc
Q psy13235 35 GNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPE---DAKATEIAT---MMFQTATLRSGFML 108 (186)
Q Consensus 35 ~~Merimkaq~~~~~qd~~~~~~~~~kkiLEINP~HPLI~kL~~l~~~d~~---~e~a~~la~---lLyD~AlLs~G~~l 108 (186)
.||||.-|+.- . .......-|-+.+++.|++.|.--..++.+ ++.+..++. +=|=.| |.+|-
T Consensus 70 IQMEKfARQa~-s--------eGv~~~~dl~V~rdsEL~R~LN~HYNk~N~~evP~~F~~v~~~tLrEFf~a-I~~Gk-- 137 (174)
T 2lmd_A 70 IQMEKYARQAI-N--------DGVTSTEELSITRDCELYRALNMHYNKANDFEVPERFLEVAQITLREFFNA-IIAGK-- 137 (174)
T ss_dssp HHHHHHHHHHH-H--------HTCSCGGGSSSSCTTHHHHHHHHHHCSSCSTTCCHHHHHHHHHHHHHHHHH-HHHTC--
T ss_pred HHHHHHHHHHH-H--------ccCCCHHHeeecchHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHH-HhcCC--
Confidence 47888887542 2 222455678899999999999877665543 333333332 223234 45554
Q ss_pred cCHHHHHHHHHHHHHH
Q psy13235 109 QDSADFAKHVESMMRQ 124 (186)
Q Consensus 109 eDp~~F~~Rin~LL~~ 124 (186)
+--.+.-+-||+++.+
T Consensus 138 D~e~sWKK~IYKvI~k 153 (174)
T 2lmd_A 138 DVDPSWKKAIYKVICK 153 (174)
T ss_dssp TTSTHHHHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHH
Confidence 2334677789999886
No 25
>2oqp_A Interleukin-21, IL-21, ZA11; four helix bundle, cytokine, multiple conformers; NMR {Homo sapiens} SCOP: a.26.1.2 PDB: 3tgx_B*
Probab=23.87 E-value=55 Score=25.05 Aligned_cols=41 Identities=5% Similarity=0.152 Sum_probs=28.8
Q ss_pred cHHHHHHHHhhhhhh---------------hhcCCCCccCHHHHHHHHHHHHHHhc
Q psy13235 86 DAKATEIATMMFQTA---------------TLRSGFMLQDSADFAKHVESMMRQTL 126 (186)
Q Consensus 86 ~e~a~~la~lLyD~A---------------lLs~G~~leDp~~F~~Rin~LL~~~l 126 (186)
...+..+..+||..- --=..|+.++|..|..|+..||.+++
T Consensus 65 ~~~~~~~~k~Lkr~L~~tn~~~~~~~~~~CpsCeSYp~k~~~eFlerL~SLLQK~i 120 (134)
T 2oqp_A 65 ERIINVSIKKLKRKPPSTNAGRRQKHRLTCPSCDSYEKKPPKEFLERFKSLLQKMI 120 (134)
T ss_dssp HHHHHHHHHHHSCCCSSSSSCSSSCSSCCCCCSTTSCEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcccccccccCCCCCCccccCcCCHHHHHHHHHHHHHHHH
Confidence 445666777888221 11124778899999999999998764
No 26
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=22.98 E-value=53 Score=21.46 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=26.4
Q ss_pred hcCCC-CccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 102 LRSGF-MLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 102 Ls~G~-~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
|..|. +.+.-+++++.+.+.|.+.+|++.+.
T Consensus 7 l~~Grls~eqk~~L~~~l~~~l~~~lgip~~~ 38 (76)
T 1gyx_A 7 CFPRELDEQQKAALAADITDVIIRHLNSKDSS 38 (76)
T ss_dssp ESCCCCCHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHhCcCCce
Confidence 45675 78888999999999999999998765
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.78 E-value=45 Score=26.70 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=7.6
Q ss_pred cccccCCCCHHHHHHH
Q psy13235 62 KTMEVNPRHPLIRELY 77 (186)
Q Consensus 62 kiLEINP~HPLI~kL~ 77 (186)
+.++++|+||.|..+.
T Consensus 260 ~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 260 QLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCChHHHHHH
Confidence 3444555555554443
No 28
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=21.47 E-value=56 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=26.8
Q ss_pred hhcCCCCccCHHHHHHHHHHHHHHhcCCCCCc
Q psy13235 101 TLRSGFMLQDSADFAKHVESMMRQTLGISVDE 132 (186)
Q Consensus 101 lLs~G~~leDp~~F~~Rin~LL~~~l~~~~~~ 132 (186)
.+..|...+.-.++++.+.++|.+.||++++.
T Consensus 63 ~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~r 94 (114)
T 4dh4_A 63 ASIGGITSSTNCKIAAALSAACERHLGVPKNR 94 (114)
T ss_dssp EEESCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 33446778888999999999999999999864
No 29
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=20.62 E-value=30 Score=24.61 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=14.4
Q ss_pred CcccccCCCCHHHHHHHH
Q psy13235 61 KKTMEVNPRHPLIRELYR 78 (186)
Q Consensus 61 kkiLEINP~HPLI~kL~~ 78 (186)
++.+++||+||.+-.|..
T Consensus 124 ~~al~l~P~~~~~~~l~~ 141 (150)
T 4ga2_A 124 ERAAKLFPGSPAVYKLKE 141 (150)
T ss_dssp HHHHHHSTTCHHHHHHHH
T ss_pred HHHHHhCcCCHHHHHHHH
Confidence 578889999998877754
No 30
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=20.55 E-value=54 Score=27.87 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=15.7
Q ss_pred CcccccCCCCHHHHHHHHh
Q psy13235 61 KKTMEVNPRHPLIRELYRR 79 (186)
Q Consensus 61 kkiLEINP~HPLI~kL~~l 79 (186)
.+...++|+||.|+.+...
T Consensus 277 ~qL~~~~P~hp~i~d~~~k 295 (310)
T 3mv2_B 277 NQLVKLDHEHAFIKHHQEI 295 (310)
T ss_dssp HHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHH
Confidence 3677889999999999764
Done!