RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13235
(186 letters)
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 138 bits (350), Expect = 7e-39
Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 5/152 (3%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ K +S RL DSPCALV S +GW+ NMER+ + A + D Y+S KKT+E+NPR
Sbjct: 380 VEKVVVSNRLVDSPCALVTSQYGWSANMERIMKAQALR---DSSMSAYMSSKKTLEINPR 436
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGIS 129
HP+I+EL +RV+ D D ++A ++++TA L SGF L+D FA + M++ L I
Sbjct: 437 HPIIKELRKRVEADKNDKTVKDLARLLYETALLTSGFSLEDPKAFASRIYRMIKLGLSID 496
Query: 130 VDEKVEEDDDDIEEEEGAGDTEPSLQ--MEEI 159
DE+VEE+D++ E E E + MEE+
Sbjct: 497 EDEEVEEEDEEAEVETTEPAEEDAEDSKMEEV 528
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 103 bits (257), Expect = 7e-26
Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 6/151 (3%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ K +SERLS SPC LV S FGW+ +ME++ M N Q D Y+ KKTME+NPR
Sbjct: 555 VEKVIVSERLSTSPCILVTSEFGWSAHMEQI-MRN--QALRDSSMAQYMMSKKTMELNPR 611
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGIS 129
HP+I+EL RRV D D ++ ++F T+ L SGF L+D +A+ + M++ LG+S
Sbjct: 612 HPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIK--LGLS 669
Query: 130 VDEKVEEDDDDIEEEEGAGD-TEPSLQMEEI 159
+DE+ EE + E + T + ME++
Sbjct: 670 LDEEEEEAAEAPVAETAPAEVTAGTSSMEQV 700
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 92.8 bits (230), Expect = 3e-22
Identities = 58/160 (36%), Positives = 94/160 (58%), Gaps = 8/160 (5%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
I K EIS RL D+PCA+V++ +G +G ME+L N ++ + +S +K +E+NP
Sbjct: 644 IFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINV----NNSDQIKAMSGQKILEINPD 699
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGIS 129
HP++ +L +R +P+D++ TE +++Q+A L SGF L+D+AD A+ V + Q LG+
Sbjct: 700 HPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVD 759
Query: 130 VDEKVEEDDDDIEEE---EGAGDTEPSLQMEEIT-DDEPQ 165
+ K+++ D I E E + EEI DDE Q
Sbjct: 760 NNLKIDDLDPAIFETKKIEQEDSPDGQKFHEEINIDDEIQ 799
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 69.4 bits (171), Expect = 3e-14
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 15 ISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIR 74
+S RL+DSP LVA + ME+L + A Q+ + K +E+NP HPL+
Sbjct: 514 LSHRLTDSPACLVADEGDMSTQMEKL-LKAAGQEVPES--------KPILEINPNHPLV- 563
Query: 75 ELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLG 127
+++ D+ ++AK ++A +++ A L G L+D A F K + ++ + L
Sbjct: 564 ---KKLADEADEAKFKDLAELLYDQALLAEGGSLEDPAAFVKRLNELLLKLLA 613
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 68.1 bits (167), Expect = 9e-14
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ +S RL+DSP L + MERL + Q+ P+ K L E+NP
Sbjct: 519 VKDVRLSHRLTDSPACLTTDGADLSTQMERL-LKAQGQE--VPESKKIL------EINPN 569
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMM 122
HPL+++L ++A ++ +++ A L G L+D A F + + ++
Sbjct: 570 HPLVKKL----ASLEDEASVADLVELLYDQALLAEGGPLEDPAAFIERLNDLL 618
>gnl|CDD|216564 pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are
necessary for efficient DNA transposition. This family
includes an amino-terminal region of the pilin gene
inverting protein (PIVML) and members of the
IS111A/IS1328/IS1533 family of transposases.
Length = 142
Score = 28.7 bits (65), Expect = 1.0
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 65 EVNPRH-PLIRELYRRVKDDPEDAKATEIATMMFQTATLR 103
VNPR R+ RR K D DA+A IA + + LR
Sbjct: 74 VVNPRQVKAFRKSLRRAKTDAIDAEA--IARLA-RRGRLR 110
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 28.5 bits (64), Expect = 2.4
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 14/63 (22%)
Query: 110 DSADFAKHVESMM----------RQTLGISVDEKVEEDDDDIEEEEGAGD----TEPSLQ 155
D +F + +++M+ DE +EDDD+ E+ E Q
Sbjct: 458 DEDEFFEFLKNMLGLKDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQ 517
Query: 156 MEE 158
M+
Sbjct: 518 MDA 520
>gnl|CDD|221313 pfam11917, DUF3435, Protein of unknown function (DUF3435). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 435 to 791 amino acids in
length. This family is related to pfam00589 suggesting
it may be an integrase enzyme.
Length = 418
Score = 28.1 bits (63), Expect = 2.5
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 51 DPQRKYYLSQKKTMEVNPRHPLIRELYRRVKD----------DPEDAKATE-IATMMFQT 99
DP+R L+ ++ V P ++EL R+ AK T + +
Sbjct: 269 DPRRPRDLTDEQKASVE-EDPELQELIRKRDHLKKEIIALYGQVAKAKGTPLYERLEKRR 327
Query: 100 ATLRSGFM-LQDSA--------DFAKHVESMMRQTLGISVDEKVEEDDDDIEE 143
+R+ L+ D + V + RQ G++V E+V+ED D +
Sbjct: 328 REVRNERQRLRRELKKKIREEFDEEQPVIDIERQLSGLAVSEEVKEDLPDEQL 380
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 28.1 bits (63), Expect = 2.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 123 RQTLGISVDEKVEEDDDDIEEEEGAGDTE-------PSLQMEEITDDEP 164
R T + EE+ +D EEEE + E P L + I++D P
Sbjct: 338 RCTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPL-LTPISEDAP 385
>gnl|CDD|241457 cd13303, PH1_Rtt106, Histone chaperone RTT106, regulator of Ty1
transposition protein 106 Pleckstrin homology (PH)
domain. Rtt106 is a histone chaperone. The binding of
Rtt106 to H3K56-acetylated (H3-H4)2 tetramers
contributes to nucleosome assembly in terms of DNA
replication, gene silencing and maintenance of genomic
stability. Rtt106 contains an N-terminal
homodimerization domain and two C-terminal
pleckstrin-homology (PH) domains (PH1 and PH2). The
N-terminal domain homodimerizes homodimerizes and
interacts with H3-H4 independently of acetylation while
the double PH domain binds the K56-containing region of
H3. Rtt106 also interacts with both the SWI/SNF and RSC
chromatin remodeling complexes and is involved in their
cell-cycle dependent recruitment to histone gene pairs
regulated by the HIR co-repressor complex (HTA1-HTB1,
HHT1-HHF1, and HHT2-HHF2). This cd contains the first PH
domain repeat. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 139
Score = 27.3 bits (61), Expect = 2.9
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 77 YRRVKDDPEDAKATEIATM-MFQTATLR----SGFMLQDSADFAKHVESMMRQ 124
Y++ DD K T+ + + + ATL+ SG + Q+ +DF+K +E M +Q
Sbjct: 78 YKKSNDD----KYTDPVLITLNKEATLKQFKESGLLDQEVSDFSKCIEYMRKQ 126
>gnl|CDD|185272 PRK15374, PRK15374, pathogenicity island 1 effector protein SipB;
Provisional.
Length = 593
Score = 28.0 bits (62), Expect = 3.1
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 2 RIATGASMI-AKAEISERLSDSPCALVASMFGWTGNMERL--AMSNAHQKADDPQRKYYL 58
R+A +MI ++ E+ ++S + T E A D ++K
Sbjct: 107 RLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAAEKKLTQ 166
Query: 59 SQKKTMEVNPRHP 71
+Q K ++P P
Sbjct: 167 AQNKLQSLDPADP 179
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 28.0 bits (63), Expect = 3.3
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 72 LIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVD 131
L EL + + + E L+ G +K ++ + G+ +
Sbjct: 7 LEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGL--------SKTKKNFGKGIKGLFLK 58
Query: 132 EKVEEDDDDIEEE 144
+ E+ D+D+ EE
Sbjct: 59 KIKEKLDEDLLEE 71
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 27.6 bits (62), Expect = 4.3
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 14/73 (19%)
Query: 68 PRHPLIRELYRRVKDDPE-DAKATEIATMMFQ----TATLRSGFMLQDSADFA-----KH 117
P L R L RV + P E ++ + T TL G L SA ++
Sbjct: 109 PNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTL--SARLVVGADGRN 166
Query: 118 VESMMRQTLGISV 130
S +R+ GI V
Sbjct: 167 --SPVREAAGIGV 177
>gnl|CDD|235901 PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.
Length = 236
Score = 27.5 bits (62), Expect = 4.3
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 73 IRELYRRVKDDPEDAKATEIATMM-FQTATLRSGFMLQDSADFAKHVESMMRQTLGISVD 131
IR+L + + +P D TE+A + R ML D+ ++ + S+D
Sbjct: 101 IRQLEQELGREPTD---TEVAEKLGLSLEEYRE--MLLDT-----NISQLF------SID 144
Query: 132 EKVEEDDDDIEEEEGAGDTEPSLQMEE 158
E E D I E D +P Q+E+
Sbjct: 145 ELRGEHGDSILVTEDHQDEDPLQQLED 171
>gnl|CDD|240441 cd13433, Na_channel_gate, Inactivation gate of the voltage-gated
sodium channel alpha subunits. This region is part of
the intracellular linker between domains III and IV of
the alpha subunits of voltage-gated sodium channels. It
is responsible for fast inactivation of the channel and
essential for proper physiological function.
Length = 54
Score = 25.2 bits (56), Expect = 6.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 53 QRKYYLSQKKTMEVNPRHPLIR 74
Q+KYY + KK P+ P+ R
Sbjct: 22 QKKYYNAMKKLGSKKPQKPIPR 43
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 26.6 bits (59), Expect = 7.4
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 74 RELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGISVDEK 133
+ELY + + + K ++ F+ +D + +E +++ VDE+
Sbjct: 114 KELYSVMGINKKAGKKLALSK--FKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEE 171
Query: 134 VEEDDDDIEEEEGAGDTEPSLQMEEITD 161
E+D+++ EEEE + ++ D
Sbjct: 172 DEKDEEEEEEEEEEDEDFDDDDDDDDDD 199
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion].
Length = 390
Score = 26.9 bits (60), Expect = 7.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 68 PRHPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFM--LQDSADFA 115
PR +++EL ++ + D K EIA + + A GF L + DF
Sbjct: 279 PRAKVLKELAEKLGKELGDLKLYEIAEELEEIALEDLGFEKKLYPNVDFY 328
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.128 0.363
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,399,751
Number of extensions: 861718
Number of successful extensions: 1156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1079
Number of HSP's successfully gapped: 66
Length of query: 186
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 95
Effective length of database: 6,901,388
Effective search space: 655631860
Effective search space used: 655631860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.5 bits)