RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13235
(186 letters)
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 148 bits (375), Expect = 3e-43
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 7/157 (4%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ K +S RL SPC +V S +GWT NMER+ + A + D Y++ KK +E+NP
Sbjct: 293 VEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALR---DNSTMGYMAAKKHLEINPD 349
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGIS 129
H +I L ++ + D D ++ ++++TA L SGF L+D A + M++ LGI
Sbjct: 350 HSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGID 409
Query: 130 VDEKVEEDDDDIEEEE---GAGDTEPSLQMEEITDDE 163
D+ +D EE GD + S +MEE+
Sbjct: 410 EDDPTADDTSAAVTEEMPPLEGDDDTS-RMEEVDHHH 445
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 144 bits (366), Expect = 8e-42
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ K +SERLS SPC LV S FGW+ +ME++ + A + + Q Y+ KKTME+NPR
Sbjct: 309 VEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQ---YMMSKKTMELNPR 365
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGIS 129
HP+I+EL RRV D D ++ ++F T+ L SGF L+D +A+ + M++ L +
Sbjct: 366 HPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLD 425
Query: 130 VDEKVEEDDDDIEEEE 145
+E+ + E
Sbjct: 426 EEEEEAAEAPVAETAP 441
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 129 bits (326), Expect = 3e-35
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ K +S +L D+P A+ FGW+ NMER+ + A + D Y+S KKT E++P+
Sbjct: 562 VEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALR---DSSMSSYMSSKKTFEISPK 618
Query: 70 HPLIRELYRRV-KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTL 126
P+I+EL +RV + +D ++ ++++TA L SGF L + FA + ++ L
Sbjct: 619 SPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGL 676
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 129 bits (326), Expect = 3e-35
Identities = 63/124 (50%), Positives = 91/124 (73%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
I KA +S+RL++SPCALVAS +GW+GNMER+ + A+Q D YY SQKKT E+NPR
Sbjct: 543 IEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPR 602
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTLGIS 129
HPLI+++ RRVK+D +D +++A ++F+TATLRSG++L D+ + +E M+R +L I
Sbjct: 603 HPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNID 662
Query: 130 VDEK 133
D K
Sbjct: 663 PDAK 666
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 124 bits (314), Expect = 2e-34
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ K +S +L D+P A+ FGW+ NMER+ + A + D Y+S KKT E++P+
Sbjct: 290 VEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALR---DSSMSSYMSSKKTFEISPK 346
Query: 70 HPLIRELYRRV-KDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMMRQTL 126
P+I+EL +RV + +D ++ ++++TA L SGF L + FA + ++ L
Sbjct: 347 SPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGL 404
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface,
exposed amphipathic helix, three stranded beta sheet;
2.60A {Escherichia coli} SCOP: d.271.1.1
Length = 126
Score = 95.4 bits (238), Expect = 5e-26
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ ++ RL+D+P + + M +L + A QK + K E+NP
Sbjct: 25 VKDVRLTHRLTDTPAIVSTDADEMSTQMAKL-FAAAGQKVPEV--------KYIFELNPD 75
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMM 122
H L++ D ++AK +E ++ A L L+D F + + ++
Sbjct: 76 HVLVKRA----ADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 124
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 99 bits (250), Expect = 5e-25
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
+ ++ RL+D+P + + M +L + A QK + K E+NP
Sbjct: 523 VKDVRLTHRLTDTPAIVSTDADEMSTQMAKL-FAAAGQKVPEV--------KYIFELNPD 573
Query: 70 HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMM 122
H L++ D ++AK +E ++ A L L+D F + + ++
Sbjct: 574 HVLVKRA----ADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 622
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 45.3 bits (108), Expect = 4e-06
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 10 IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQ 47
+ ++ RL+D+P + + M +L + A Q
Sbjct: 523 VKDVRLTHRLTDTPAIVSTDADEMSTQMAKL-FAAAGQ 559
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 6e-04
Identities = 39/228 (17%), Positives = 64/228 (28%), Gaps = 94/228 (41%)
Query: 37 MERLAMSNAHQK----ADDPQRKYY-LSQKKTMEVNPR----HP------LIRELY---- 77
M+ S A Q AD+ + Y S + NP H IRE Y
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 78 -----------RRVKDD------------PEDA-KATE-----IATM---MFQTATLRSG 105
++ + + AT+ + M F+ L+S
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED--LKSK 1750
Query: 106 FMLQDSADFAKH----------------VESMMRQTL----GISVDEKVEEDDDDIEEEE 145
++ A FA H +ES++ + G+++ V D E
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVE--VVFYRGMTMQVAVPRD------EL 1802
Query: 146 GAGDT-----EPSLQMEEITDDEPQTTCVQCEGLNHCITKRF----NY 184
G + P ++ E V+ G T NY
Sbjct: 1803 GRSNYGMIAINPG-RVAASFSQEALQYVVERVGKR---TGWLVEIVNY 1846
Score = 32.7 bits (74), Expect = 0.069
Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 43/128 (33%)
Query: 59 SQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHV 118
SQ++ M +LY+ ++ A ++ + AD H
Sbjct: 1626 SQEQGM--------GMDLYKT----------SKAAQDVW------------NRAD--NH- 1652
Query: 119 ESMMRQTLGISVDEKVEEDDDDIE----EEEGAGDTE--PSLQMEEITDDEPQTTCVQCE 172
+ T G S+ + V + ++ E+G E ++ E I D + +T + +
Sbjct: 1653 ---FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI-FK 1708
Query: 173 GLNHCITK 180
+N T
Sbjct: 1709 EINEHSTS 1716
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.006
Identities = 18/154 (11%), Positives = 35/154 (22%), Gaps = 65/154 (42%)
Query: 8 SMIAKAEISERLSDSP---CA---LVASMFGWTGNMERLAMSNAHQKADDPQR----KYY 57
S++ K + R D P S+ E + D K+
Sbjct: 305 SLLLKY-LDCRPQDLPREVLTTNPRRLSIIA-----ESIR--------DGLATWDNWKHV 350
Query: 58 LSQK--KTMEV-----NPRHPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQD 110
K +E P R+++ R+ P A
Sbjct: 351 NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPT------------------- 389
Query: 111 SADFAKHVESMMRQTLGISVDEKVEEDDDDIEEE 144
L + + ++ D + +
Sbjct: 390 -------------ILLSLIWFDVIKSDVMVVVNK 410
Score = 28.3 bits (62), Expect = 2.1
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 90 TEIATMMFQTATLRSGFMLQDSADF-AKHVESMMRQTLGIS-VDEKVEEDDDD 140
E +Q + S F +F K V+ M + L +D + D
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 28.5 bits (64), Expect = 1.5
Identities = 6/34 (17%), Positives = 8/34 (23%), Gaps = 5/34 (14%)
Query: 27 VASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQ 60
+ SM ME + KY
Sbjct: 385 IHSMS-----MEFFTWPWMKLFFKEDAEKYQFYH 413
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 27.8 bits (62), Expect = 2.1
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 27 VASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQ 60
+ SM ME ++ KYY S
Sbjct: 388 IHSMS-----MEFFTWPWMKLFFEEDADKYYFSH 416
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR
{Rattus norvegicus} SCOP: j.12.1.1
Length = 53
Score = 25.6 bits (56), Expect = 2.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 51 DPQRKYYLSQKKTMEVNPRHPLIR 74
+ Q+KYY + KK P+ P+ R
Sbjct: 19 EEQKKYYNAMKKLGSKKPQKPIPR 42
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 27.4 bits (61), Expect = 3.5
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 127 GISVDEKVEEDDDDIEEEEGAGDTEPSLQMEEITDDEP 164
G S D+ +E +DD EE + + +D
Sbjct: 1 GPSDDDLLESEDDYGSEEALSEENVHEASANPQPEDFH 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 3.8
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 14/35 (40%)
Query: 132 EKVEEDDDDIEEEEG-----AGDTEPSL----QME 157
EK +++ + A D+ P+L ME
Sbjct: 18 EK-----QALKKLQASLKLYADDSAPALAIKATME 47
>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase,
lyase; 2.20A {Halothiobacillus neapolitanus}
Length = 542
Score = 26.9 bits (59), Expect = 4.4
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 101 TLRSGFMLQDSADFAKHVESMMRQTLGISVDEKVEEDD 138
L+ + D V+ + + +LG ++ E++ +D+
Sbjct: 107 FLQVVAGIPLGLDHVTRVQELAQSSLGHTLPEELLKDN 144
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 26.8 bits (60), Expect = 5.0
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 37 MERLAMSNAHQKADDPQRKYYLSQKKTME 65
+ + DP+R YYLS +E
Sbjct: 81 VIDWNKTQQKFTTRDPKRVYYLS----LE 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 26.2 bits (58), Expect = 6.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 131 DEKVEEDDDDIEEEEGAGDTEPSLQMEEITDDE 163
+E +E+++D EEE + EP EE D E
Sbjct: 344 EELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 376
>4ets_A Ferric uptake regulation protein; metal binding protein,
transcription factor; 2.10A {Campylobacter jejuni
subsp}
Length = 162
Score = 25.8 bits (57), Expect = 7.0
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 52 PQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAK 88
QR+ L KT+ + H LY +K D
Sbjct: 33 KQREVLL---KTLYHSDTHYTPESLYMEIKQAEPDLN 66
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 26.3 bits (59), Expect = 7.4
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 37 MERLAMSNAHQKADDPQRKYYLSQKKTME 65
+ R + H DP+R YYLS +E
Sbjct: 53 VGRWIRTQQHYYEKDPKRIYYLS----LE 77
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA
binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A
2rgv_A*
Length = 145
Score = 25.6 bits (57), Expect = 7.8
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 52 PQRKYYLSQKKTMEVNPRHPLIRELYRRVKD-DPEDAKAT 90
PQR L + + + HP ++Y+ ++ P + AT
Sbjct: 22 PQRHAIL---EYLVNSMAHPTADDIYKALEGKFPNMSVAT 58
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 25.7 bits (57), Expect = 9.6
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 130 VDEKVEEDDDDIEEEEGAGDTEP 152
+D +EE +D ++E P
Sbjct: 344 LDASLEEPEDVVDEAVAITSDAP 366
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.128 0.363
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,825,642
Number of extensions: 163074
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 37
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.6 bits)