RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13235
         (186 letters)



>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
           [TaxId: 562]}
          Length = 115

 Score = 79.9 bits (197), Expect = 2e-20
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 10  IAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 69
           +    ++ RL+D+P  +       +  M +L  +   +  +          K   E+NP 
Sbjct: 14  VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPE---------VKYIFELNPD 64

Query: 70  HPLIRELYRRVKDDPEDAKATEIATMMFQTATLRSGFMLQDSADFAKHVESMM 122
           H L++       D  ++AK +E   ++   A L     L+D   F + +  ++
Sbjct: 65  HVLVKRA----ADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 113


>d1w36c3 c.52.1.25 (C:818-1121) Exodeoxyribonuclease V beta chain
           (RecC), C-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 304

 Score = 25.4 bits (55), Expect = 5.5
 Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 108 LQDSADFAKH-VESMMRQTLGISVDEKVEEDDDD 140
           L+    F  H V +  +  L ++   +  E  D 
Sbjct: 17  LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDT 50


>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
          (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 824

 Score = 25.0 bits (54), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 37 MERLAMSNAHQKADDPQRKYYLS 59
          + R   +  H    DP+R YYLS
Sbjct: 53 VGRWIRTQQHYYEKDPKRIYYLS 75


>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score = 25.0 bits (54), Expect = 7.4
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 37  MERLAMSNAHQKADDPQRKYYLS 59
           +     +       DP+R YYLS
Sbjct: 78  VIDWNKTQQKFTTRDPKRVYYLS 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.363 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 673,041
Number of extensions: 29527
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 7
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.5 bits)