Query psy13236
Match_columns 280
No_of_seqs 111 out of 229
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:37:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01267 F-actin_cap_A: F-acti 100.0 2E-104 5E-109 730.4 25.2 270 6-276 1-271 (271)
2 KOG0836|consensus 100.0 5E-103 1E-107 703.6 22.1 278 1-279 3-281 (282)
3 PF01115 F_actin_cap_B: F-acti 98.3 0.00038 8.2E-09 63.7 22.7 218 7-241 1-234 (242)
4 KOG3174|consensus 97.0 0.11 2.4E-06 47.6 17.6 230 2-259 1-252 (275)
5 PF10698 DUF2505: Protein of u 63.4 90 0.002 26.3 10.0 58 153-215 77-134 (159)
6 KOG2477|consensus 59.6 14 0.00031 37.6 4.7 70 186-258 481-552 (628)
7 PF09911 DUF2140: Uncharacteri 57.8 52 0.0011 29.0 7.5 31 193-228 106-136 (187)
8 PF14977 FAM194: FAM194 protei 56.5 42 0.0009 30.3 6.7 63 130-205 21-86 (208)
9 PF07661 MORN_2: MORN repeat v 43.9 27 0.00059 19.1 2.4 14 189-202 5-18 (22)
10 PF08265 YL1_C: YL1 nuclear pr 34.5 16 0.00034 22.9 0.4 13 79-91 10-22 (30)
11 PF01213 CAP_N: Adenylate cycl 33.9 28 0.0006 33.3 2.1 18 117-134 190-207 (312)
12 PF08146 BP28CT: BP28CT (NUC21 27.4 32 0.00069 29.2 1.2 40 222-267 30-69 (153)
13 KOG3859|consensus 25.1 98 0.0021 29.8 4.0 52 184-237 77-134 (406)
14 PF12151 MVL: Mannan-binding p 24.7 40 0.00088 22.2 1.0 9 161-169 17-25 (37)
15 cd01782 AF6_RA_repeat1 Ubiquit 23.7 2.9E+02 0.0063 22.6 6.0 55 163-226 1-55 (112)
16 PF12466 GDH_N: Glutamate dehy 23.6 30 0.00065 24.9 0.3 16 246-261 36-51 (60)
17 PHA02633 hypothetical protein; 23.0 1.8E+02 0.0038 21.5 4.2 20 180-199 42-61 (63)
18 PF09906 DUF2135: Uncharacteri 22.7 47 0.001 23.0 1.1 18 182-199 2-19 (50)
19 PF14969 DUF4508: Domain of un 20.1 1.3E+02 0.0029 24.0 3.3 35 3-37 16-50 (98)
No 1
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=100.00 E-value=2.3e-104 Score=730.40 Aligned_cols=270 Identities=53% Similarity=0.950 Sum_probs=242.2
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeCCCCCCeEEccccccCCCeeeeCC
Q psy13236 6 EKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFYDPR 85 (280)
Q Consensus 6 ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~~~~~~viis~~n~l~~~~y~DP~ 85 (280)
||++||++||++||||||++|++|||.|++||.++++.+++||++||++||+||++||.+++||||+||+++++||+||+
T Consensus 1 ek~~ii~~fl~~aPPGE~~~V~~Dlr~l~~dd~~~~~~i~~a~~~yn~~q~~~v~~~~~~~~viis~~n~~~~~ry~Dp~ 80 (271)
T PF01267_consen 1 EKVEIISSFLLQAPPGEFNEVFNDLRTLLGDDSLLKEGIAEAFEQYNEEQFIPVKLPGSDHKVIISKYNKLGGNRYFDPR 80 (271)
T ss_dssp HHHHHHHHHHHT--TT-HHHHHHHHHHHHT-HHHHHHHSHHHHHHHHHHTTEEE--TTSSS-EEE-GGGBESTTEEEETT
T ss_pred CHHHHHHHHHHcCCCccHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHCcEEEEeCCCCcceEEecccccCCCeEEEec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeccceeeeccccCCC-CCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecCCCCccc
Q psy13236 86 SKQSFKFDHLRIEASDLESWEP-DNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWN 164 (280)
Q Consensus 86 ~~~~F~~Dhl~~~~~d~e~~~~-~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~Nfwn 164 (280)
++++|+|||++++|+|++|++. ++.+|.+|.+|+++|++|+++|||+|+|+||+.+++++..|+|||+|++|||+||||
T Consensus 81 ~~~~F~~DHl~~~~~d~e~~~~~~~~~e~~R~~l~~~l~~Yv~~hy~~g~~~V~~~~~~~~~~l~i~I~~~k~n~~Nfwn 160 (271)
T PF01267_consen 81 SKKSFSVDHLKQKASDVEPYEPPDEELESYRDALDKALEKYVKEHYPSGACGVYPKSEEDKETLVICIVAHKYNPKNFWN 160 (271)
T ss_dssp TTEEEEEETTTTEEEEEEE-----TSSHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEETTEEEEEEEEEEEEEEGGGTEE
T ss_pred cCcEEEEeeeccEEccCccccccccchHHHHHHHHHHHHHHHHHhccCceeEEEeccCCCccEEEEEEEecccccccccC
Confidence 9999999999999999999983 457999999999999999999999999999999887766799999999999999999
Q ss_pred eeEEEEEEEEecCCceEEEEEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13236 165 GRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTM 244 (280)
Q Consensus 165 G~WrS~w~~~~~~~~~~l~G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~~~~~~l 244 (280)
|||||+|+|++.+ .++|+|+|+|+|||||||||||+++|++..++.++++.++|++||++|+++|++||++|+++|++|
T Consensus 161 G~WrS~w~~~~~~-~~~l~G~I~V~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~e~~~~l 239 (271)
T PF01267_consen 161 GRWRSEWTVDFSS-SGTLSGKIKVQVHYYEDGNVQLNSSKEVSETVSVSNDEQFASDIVKAIKEAENKYQTSLNESYNNL 239 (271)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEEE--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeEEEEEecCC-CceEEEEEEeeEEEEeecEEEEEEccccceeeccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999854 369999999999999999999999999999999888889999999999999999999999999999
Q ss_pred ChHHHhhhhhcCCCCCccccccceeeeeeccc
Q psy13236 245 SDTTFKALRRQLPVTRMKIDWNKIVSYSIGKE 276 (280)
Q Consensus 245 se~~FK~LRR~LPVTR~KidW~ki~~yrlg~d 276 (280)
|+++||+|||+||||||||||+||++||||+|
T Consensus 240 s~~tFK~LRR~LPVTRsKi~W~ki~~yrlg~d 271 (271)
T PF01267_consen 240 SEKTFKALRRQLPVTRSKINWNKIGNYRLGKD 271 (271)
T ss_dssp HHTHHHHHS-SS-TTTSS-SHHHHHTTTS---
T ss_pred hHHHHHHhhhhCCCCCCcccccccccEEecCC
Confidence 99999999999999999999999999999997
No 2
>KOG0836|consensus
Probab=100.00 E-value=5.3e-103 Score=703.56 Aligned_cols=278 Identities=59% Similarity=1.004 Sum_probs=267.5
Q ss_pred CCChHHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeCCCCCCeEEccccccCCCe
Q psy13236 1 MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGR 80 (280)
Q Consensus 1 ~~s~~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~~~~~~viis~~n~l~~~~ 80 (280)
.||+++|++||+.||++|||||||+|++|||.|+.||++|++++.+||++||++||+||+++|.+++||||+||+++++|
T Consensus 3 ~lS~~~k~rii~kfi~~APPGEfneVf~Dlr~ll~~d~l~~e~~~~A~~qYn~~~~vpv~i~g~~~~viIS~~n~lg~~r 82 (282)
T KOG0836|consen 3 ELSDAEKVRIISKFILHAPPGEFNEVFNDLRLLLSNDELLKEAAHEAFAQYNVDQMVPVEIDGGANQVIISEYNDLGNNR 82 (282)
T ss_pred cccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcchhHHHHHHHHHHHHhchhcceeEecCCCCCceEEecccccCcce
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCeeEEEeccceeeeccccCCCCC-CchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecCC
Q psy13236 81 FYDPRSKQSFKFDHLRIEASDLESWEPDN-STETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQP 159 (280)
Q Consensus 81 y~DP~~~~~F~~Dhl~~~~~d~e~~~~~~-~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~np 159 (280)
||||+++++|+|||+++++.|++|++.+. ..|.+|.+|+.+|..|+.+|||+|.+.|..+.++.+.+|+|||++|+|+|
T Consensus 83 f~Dp~~k~sFk~dhl~kea~d~qp~~~~~~~~E~~r~~l~~~l~~y~~~hy~~~~t~~vkk~dg~~~~l~icIesh~y~p 162 (282)
T KOG0836|consen 83 FLDPVNKKSFKYDHLRKEAEDVQPYEAEINIIEIWRYALDAQLKKYVSDHYPKGVTFVVKKSDGEQETLTICIESHQYQP 162 (282)
T ss_pred ecchhhceeeeHHHHHHHhccCCCcchhhhhhHHHHHHHHHHHHHHHHhccCCCceEEEeccCCcceEEEEEEeecccCc
Confidence 99999999999999999999999998764 57889999999999999999999988776666666678999999999999
Q ss_pred CCccceeEEEEEEEEecCCceEEEEEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13236 160 KNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISE 239 (280)
Q Consensus 160 ~NfwnG~WrS~w~~~~~~~~~~l~G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~~ 239 (280)
+|||||||||+|+|++.+ ..+|+|.|+|||||||||||||.++|++.+++.+++..++|+++++.|+++||+||++|++
T Consensus 163 kNfwNG~WRS~w~~~v~~-~~~l~G~i~vqvHYyEdGNV~l~s~Kd~qds~~vsn~~q~a~e~~~iI~~~Eneyq~ai~e 241 (282)
T KOG0836|consen 163 KNFWNGRWRSEWNYDVQP-TTELKGRIKVQVHYYEDGNVQLVSSKDIQDSLTVSNEVQTAKEFIKIIEEAENEYQAAISE 241 (282)
T ss_pred ccccCCceeeeeeeccCc-hheeeeEEEEEEEEEecCcEEEEecCcchhhheeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHhhhhhcCCCCCccccccceeeeeecccccC
Q psy13236 240 NYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKN 279 (280)
Q Consensus 240 ~~~~lse~~FK~LRR~LPVTR~KidW~ki~~yrlg~d~~~ 279 (280)
+|++|||+|||+||||||||||||||+||++||||++|..
T Consensus 242 ~yq~lsD~tFKaLRRqLPVTRtkIdW~kilsy~igke~~~ 281 (282)
T KOG0836|consen 242 NYQTLSDTTFKALRRQLPVTRTKIDWNKILSYRIGKEMQN 281 (282)
T ss_pred HHHhcChhHHHHHHhhCCceeeeccHHHhhhHHHHHHhcc
Confidence 9999999999999999999999999999999999999875
No 3
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=98.31 E-value=0.00038 Score=63.66 Aligned_cols=218 Identities=18% Similarity=0.316 Sum_probs=125.0
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeC-CCCCCeEEccccccCCCeeeeCC
Q psy13236 7 KVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLN-NSDLPVLISEHNDLGNGRFYDPR 85 (280)
Q Consensus 7 k~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~-~~~~~viis~~n~l~~~~y~DP~ 85 (280)
|.+-+-+|+..=||-.+.+-+++|..|.++ +.+.+... .+|-..|..+ .....+|.|.||+ .|..|=-|=
T Consensus 1 k~d~aLdLlRRlpP~~ie~nl~~l~~L~Pd---l~edLLss-----VD~PLkv~~d~~~~k~yL~CdYNR-DgDSYRSPw 71 (242)
T PF01115_consen 1 KLDAALDLLRRLPPKKIEKNLSNLIDLVPD---LTEDLLSS-----VDQPLKVARDKETGKDYLLCDYNR-DGDSYRSPW 71 (242)
T ss_dssp HHHHHHHHHTTS-GGGHHHHHHHHHHHSGG---GHHHHHHH-----S----EEEEETTTTEEEEESGGGE-ETTEEE-TT
T ss_pred ChhHHHHHHhhCChHHHHHHHHHHHHHHHH---HHHHHHHh-----CCCcceEEEchhhCCeeEeecccC-CcccccCCC
Confidence 456778899999999999999999999872 22333332 3444444443 3457799999998 444444443
Q ss_pred CCeeEEEeccceeeeccccCCCCCCchHHH---HHHHHHHHHHhhhhcCCceEEEEeeccCC--ceeEEEEEE-eeecCC
Q psy13236 86 SKQSFKFDHLRIEASDLESWEPDNSTETWR---SLIELELDTYTASHYKNGTSSVFAKKQGE--TLQINACIE-DHQFQP 159 (280)
Q Consensus 86 ~~~~F~~Dhl~~~~~d~e~~~~~~~~e~~R---~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~--~~~l~i~I~-~~k~np 159 (280)
+++=| .--. ..+.++...+ .+.+| .+..+++..|.+-+|-+|+++||-=+.++ . ++-|+- -+.-++
T Consensus 72 SNkY~---P~~~-~~~~~dg~~P--S~~LR~LEi~aN~~Fd~Yr~lYyeGGvSSVYlWd~d~~~g--Fag~vLiKK~~~~ 143 (242)
T PF01115_consen 72 SNKYY---PPLE-GDDLEDGPVP--SERLRKLEIEANEAFDIYRDLYYEGGVSSVYLWDLDDDDG--FAGVVLIKKEGDP 143 (242)
T ss_dssp T--EE---S--S------S-------HHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETT--E--EEEEEEEEEEE-T
T ss_pred CcccC---CCcc-ccccCCCCCC--hHHHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEecCCCcc--eeEEEEEEecCCC
Confidence 33321 1100 0022222222 34444 45778899999999999999999643232 3 443333 233355
Q ss_pred CCccceeEEEEEEEEecCC-----ceEEEEEEEEeEEEE--eeceEEEEee--eeeeeceeecCchhhHHHHHHHHHHHH
Q psy13236 160 KNYWNGRWRSYWTINIEGN-----NVEVKGNLKVQVHYY--EDGNVQLVSS--KDIKETVVVTSEEQTAREIVKLIEESE 230 (280)
Q Consensus 160 ~NfwnG~WrS~w~~~~~~~-----~~~l~G~I~v~vHYy--EdGNVqL~~~--k~~~~~~~~~~~~~~a~~iv~~I~~~E 230 (280)
.+==.|.|-|.=+|.+... .-.|+-+|-+.+-== ..|.+.|..+ +..+.++++++...-...|=+.|++.|
T Consensus 144 ~~~~~g~WDSIHV~Ev~~~~~~~a~YklTSTV~L~l~~~~~~~g~~~LsGsltrq~e~~~~~~~~~~Hi~NiG~lIEdmE 223 (242)
T PF01115_consen 144 SNEISGSWDSIHVFEVTESSSGTAHYKLTSTVMLSLKTNDDASGSFNLSGSLTRQTEKDLPVSDSSSHIANIGRLIEDME 223 (242)
T ss_dssp GCCEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEEEEE-SSSS-HHHHHHHHHHHHH
T ss_pred CCCccceEeeeEEEEEEecCCCeEEEEEEEEEEEEEecCCCCCceEeecceeehhhccccccCCCchHHHHHHHHHHHHH
Confidence 5666999999999887432 123444443322111 1255555433 233334455444556778889999999
Q ss_pred HHHHHHHHHHH
Q psy13236 231 TAYQQAISENY 241 (280)
Q Consensus 231 ~~~q~~L~~~~ 241 (280)
+.+-..|++-|
T Consensus 224 ~~mR~~L~~VY 234 (242)
T PF01115_consen 224 NKMRNLLQEVY 234 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999887
No 4
>KOG3174|consensus
Probab=96.96 E-value=0.11 Score=47.58 Aligned_cols=230 Identities=20% Similarity=0.265 Sum_probs=137.3
Q ss_pred CChHHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeC---CCCCCeEEccccccCC
Q psy13236 2 LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLN---NSDLPVLISEHNDLGN 78 (280)
Q Consensus 2 ~s~~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~---~~~~~viis~~n~l~~ 78 (280)
|| ++..+-|-.|+..=||-++..=++||..|.++ +.+-+...+-| |.++. .....+++|.||. .+
T Consensus 1 Ms-dqQlD~ALDLmRrLpPqqieKnL~nLIdL~P~---L~edLLsSVdq-------plKia~dke~g~~yllcDynr-dg 68 (275)
T KOG3174|consen 1 MS-DQQLDCALDLMRRLPPQQIEKNLSNLIDLAPH---LCEDLLSSVDQ-------PLKIARDKESGKQYLLCDYNR-DG 68 (275)
T ss_pred Cc-hHHHHHHHHHHhcCCHHHHHHHHHHHHHhchH---HHHHHHhhccc-------ceeehhhhhcCCeeeeeecCC-Cc
Confidence 45 45577888999999999999999999999873 22333332222 22221 1236689999998 44
Q ss_pred CeeeeCCCCeeEEEeccceeeeccccCCCCC-CchHHHHHHHHHHHHHhhhhcCCceEEEEeecc-CCceeEEEEEEeee
Q psy13236 79 GRFYDPRSKQSFKFDHLRIEASDLESWEPDN-STETWRSLIELELDTYTASHYKNGTSSVFAKKQ-GETLQINACIEDHQ 156 (280)
Q Consensus 79 ~~y~DP~~~~~F~~Dhl~~~~~d~e~~~~~~-~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~-~~~~~l~i~I~~~k 156 (280)
..| |+--+=+||. ..+....+. -+-.+-.....+++.|..-+|-.|+.+||--+- .+.+.=++.|--.-
T Consensus 69 Dsy---RsPwsnsy~p------Pledg~~Psd~lrklei~aN~af~~yrdly~egGvssVylwdld~~gfag~vlikK~~ 139 (275)
T KOG3174|consen 69 DSY---RSPWSNSYDP------PLEDGVYPSDRLRKLEIEANLAFRSYRDLYYEGGVSSVYLWDLDFGGFAGVVLIKKAG 139 (275)
T ss_pred ccc---cCCCCcccCC------ccccCCCcHHHHHHHHHHHHHHHHHHhHHheecCcceEEEEeccCCCcccceEEeecc
Confidence 555 4444444544 113333331 122233446778889999999999999996432 22122222222111
Q ss_pred cCCCCccceeEEEEEEEEecCC--ceEEEEEEEEeEEEEeeceEEEEeeeeee---------------eceeecCchhhH
Q psy13236 157 FQPKNYWNGRWRSYWTINIEGN--NVEVKGNLKVQVHYYEDGNVQLVSSKDIK---------------ETVVVTSEEQTA 219 (280)
Q Consensus 157 ~np~NfwnG~WrS~w~~~~~~~--~~~l~G~I~v~vHYyEdGNVqL~~~k~~~---------------~~~~~~~~~~~a 219 (280)
=-.+|- .|.|-|.=.|.+... ..+..=++.-.+-|+ |.++|.-+ .-+.+.......
T Consensus 140 ~~~~~~-~g~wdsIhvie~~~~~~~~s~~y~lTSTi~l~------l~~~K~~s~~~mnl~g~Ltrq~e~d~~v~~~~tHi 212 (275)
T KOG3174|consen 140 DGHKNI-VGCWDSIHVIEVTEETSLRSAHYKLTSTIMLW------LSTTKNESLGAMNLGGSLTRQTEKDVAVDDSRTHI 212 (275)
T ss_pred CCCCCc-ccceeeeEEEEEecccccceeEEEeeeEEEEE------ecCCCccchhhhhhhhHhhhhhhcccccccccHHH
Confidence 111221 399999988887542 112222233333333 23333222 111222223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhhhhcCCCC
Q psy13236 220 REIVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPVT 259 (280)
Q Consensus 220 ~~iv~~I~~~E~~~q~~L~~~~~~lse~~FK~LRR~LPVT 259 (280)
.++-+.|++.|++...-|++-|-.=+...+-.+|-.+|+.
T Consensus 213 an~gklve~~et~mr~~l~~iYfgkTkdi~~~~Rs~~~~a 252 (275)
T KOG3174|consen 213 ANQGKLVEDMETKMRNLLNEIYFGKTKDISNQLRSPQALA 252 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHhhccchhhhh
Confidence 6789999999999999999999999999999999877764
No 5
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=63.41 E-value=90 Score=26.25 Aligned_cols=58 Identities=19% Similarity=0.415 Sum_probs=45.7
Q ss_pred EeeecCCCCccceeEEEEEEEEecCCceEEEEEEEEeEEEEeeceEEEEeeeeeeeceeecCc
Q psy13236 153 EDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSE 215 (280)
Q Consensus 153 ~~~k~np~NfwnG~WrS~w~~~~~~~~~~l~G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~ 215 (280)
.-..+. .+.+|+|...+.+++....+.++|++.+.- .++-..+...-+++.++++-+.
T Consensus 77 ~~e~w~--~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~---~~~gt~~~~~g~v~v~VPlvGg 134 (159)
T PF10698_consen 77 RTETWT--PLDDGRRTGTFTVSIPGAPVSISGTMRLRP---DGGGTRLTVEGEVKVKVPLVGG 134 (159)
T ss_pred EEEEEe--cCCCCeEEEEEEEEecCceEEEEEEEEEec---CCCCEEEEEEEEEEEEEccccH
Confidence 444554 344999999999998655689999999988 6777999999999888887654
No 6
>KOG2477|consensus
Probab=59.59 E-value=14 Score=37.59 Aligned_cols=70 Identities=24% Similarity=0.344 Sum_probs=46.7
Q ss_pred EEEeEEEEeeceEEEEeeeeeeeceeecCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhhhhcCCC
Q psy13236 186 LKVQVHYYEDGNVQLVSSKDIKETVVVTSE--EQTAREIVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPV 258 (280)
Q Consensus 186 I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~--~~~a~~iv~~I~~~E~~~q~~L~~~~~~lse~~FK~LRR~LPV 258 (280)
-..+|-|||..+--=..-+...+++++.-. +....-+=++|.++|.+|---.+...-+++ =|+||+++|-
T Consensus 481 ~n~dviFyE~a~~l~rrpH~~IeCIPvpqeig~map~YFKkAI~esE~Ews~~~nkkliets---~k~lR~~IpK 552 (628)
T KOG2477|consen 481 MNLDVIFYENAPSLQRRPHTAIECIPVPQEIGSMAPAYFKKAISESEEEWSHRKNKKLIETS---KKALRKMIPK 552 (628)
T ss_pred cCCCeEEEeccCccccCCceeEEEeechHHhhhhhhHHHHHHHhhhHHHHHhhhHHHHHHhh---HHHHHHhccc
Confidence 346788999987544455566677777533 223345679999999999543343333333 3999999994
No 7
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=57.82 E-value=52 Score=28.97 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=18.7
Q ss_pred EeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHH
Q psy13236 193 YEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEE 228 (280)
Q Consensus 193 yEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~ 228 (280)
-|+|||+|+...---.++++. .+.|.+.|++
T Consensus 106 ~~nGnv~L~~~s~svG~L~LP-----~s~Vl~yi~~ 136 (187)
T PF09911_consen 106 LENGNVQLKAKSLSVGTLPLP-----ISFVLKYIKK 136 (187)
T ss_pred ecCCcEEEEeceeEecCccCC-----HHHHHHHHHh
Confidence 499999999876433333332 3445555543
No 8
>PF14977 FAM194: FAM194 protein
Probab=56.55 E-value=42 Score=30.34 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=0.0
Q ss_pred cCCceEEEEeeccCCceeEEEEEEeeecCCCCccceeEEEEEEEEecCCceEEEEEEEEeEE---EEeeceEEEEeeee
Q psy13236 130 YKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVH---YYEDGNVQLVSSKD 205 (280)
Q Consensus 130 yp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~NfwnG~WrS~w~~~~~~~~~~l~G~I~v~vH---YyEdGNVqL~~~k~ 205 (280)
||+|+..||=. .|. |+|||... . .|+ ...|.++=++ +.++-+...-.-| ||+.||++|.-+..
T Consensus 21 f~DGsg~i~YP--SGn--lAi~~~~~--~-----~~~-~~~~v~eD~~-~~~ilA~Fd~~G~g~~y~~~g~~~l~l~~~ 86 (208)
T PF14977_consen 21 FPDGSGQIFYP--SGN--LAICISPT--C-----RGG-FTYIVYEDSP-ENTILALFDSSGHGTCYHPNGNIWLVLNQE 86 (208)
T ss_pred cCCCCEEEEeC--CCC--EEEEEecc--C-----CCc-eEEEEEecCC-CCceEEEEcCCCCEEEEcCCCCEEEEEECC
No 9
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=43.86 E-value=27 Score=19.06 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=9.1
Q ss_pred eEEEEeeceEEEEe
Q psy13236 189 QVHYYEDGNVQLVS 202 (280)
Q Consensus 189 ~vHYyEdGNVqL~~ 202 (280)
...|||+|+++-..
T Consensus 5 ~~~yy~nG~l~~~~ 18 (22)
T PF07661_consen 5 WKFYYENGKLKSEG 18 (22)
T ss_pred EEEEeCCCCEEEEE
Confidence 35677777776544
No 10
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=34.51 E-value=16 Score=22.95 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=11.2
Q ss_pred CeeeeCCCCeeEE
Q psy13236 79 GRFYDPRSKQSFK 91 (280)
Q Consensus 79 ~~y~DP~~~~~F~ 91 (280)
.+|.||+++.-|.
T Consensus 10 A~Y~DP~T~l~Y~ 22 (30)
T PF08265_consen 10 ARYRDPKTGLPYA 22 (30)
T ss_pred ccccCCCCCCccc
Confidence 8999999998763
No 11
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=33.91 E-value=28 Score=33.31 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhhcCCce
Q psy13236 117 LIELELDTYTASHYKNGT 134 (280)
Q Consensus 117 al~~~l~~Yv~~hyp~g~ 134 (280)
+|-++|++||++||++|.
T Consensus 190 ~l~~~L~~YVke~httGl 207 (312)
T PF01213_consen 190 ALLKELQAYVKEHHTTGL 207 (312)
T ss_dssp HHHHHHHHHHHHHSTTS-
T ss_pred HHHHHHHHHHHHhCccCc
Confidence 477899999999999774
No 12
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=27.39 E-value=32 Score=29.24 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHhhhhhcCCCCCccccccc
Q psy13236 222 IVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPVTRMKIDWNK 267 (280)
Q Consensus 222 iv~~I~~~E~~~q~~L~~~~~~lse~~FK~LRR~LPVTR~KidW~k 267 (280)
-...|.++|...-..+.+.--.|||.+|| |+-.+-++|..
T Consensus 30 ~~~~v~~vE~~v~~~~~~lV~KLnE~~FR------PlF~~l~dWA~ 69 (153)
T PF08146_consen 30 DLEDVDEVESSVISAFVSLVLKLNEATFR------PLFLKLVDWAT 69 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcccchhH------hHHHHHHHHHc
Confidence 35678899999999999999999999999 55666688874
No 13
>KOG3859|consensus
Probab=25.05 E-value=98 Score=29.83 Aligned_cols=52 Identities=33% Similarity=0.469 Sum_probs=36.0
Q ss_pred EEEEEeEEEEe--eceEEEEeeeeeeeceeecC---chhhHHHHHHHHH-HHHHHHHHHH
Q psy13236 184 GNLKVQVHYYE--DGNVQLVSSKDIKETVVVTS---EEQTAREIVKLIE-ESETAYQQAI 237 (280)
Q Consensus 184 G~I~v~vHYyE--dGNVqL~~~k~~~~~~~~~~---~~~~a~~iv~~I~-~~E~~~q~~L 237 (280)
-.++++.+-|| .+||||+-+ +-+++-+.+ .+...+.||..|. .+|+-+|..|
T Consensus 77 ~~V~L~~~TyelqEsnvrlKLt--iv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEEL 134 (406)
T KOG3859|consen 77 PNVKLQANTYELQESNVRLKLT--IVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEEL 134 (406)
T ss_pred CCceeecchhhhhhcCeeEEEE--EEeecccccccCcccccchHHHHHHHHHHHHHHHHH
Confidence 45678888887 699999876 444555542 3566788999885 4566666554
No 14
>PF12151 MVL: Mannan-binding protein; InterPro: IPR021992 This domain family is found in bacteria, and is approximately 40 amino acids in length, There is a single completely conserved residue G that may be functionally important. The domain occurs in two types of proteins. In mannan binding proteins [], it forms a homodimeric molecule which complexes into a homo-octamer. In thiamidases it occurs without repeats but in the presence of other domains. MVL is distinct amongst other oligomannoside binding proteins in that it exhibits specificity for certain tetrasaccharides. Each molecule of MVL has four distinct carbohydrate binding sites. ; PDB: 1ZHQ_D 1ZHS_E.
Probab=24.74 E-value=40 Score=22.16 Aligned_cols=9 Identities=44% Similarity=1.380 Sum_probs=6.5
Q ss_pred CccceeEEE
Q psy13236 161 NYWNGRWRS 169 (280)
Q Consensus 161 NfwnG~WrS 169 (280)
-.|+|.|+.
T Consensus 17 g~W~Gqw~~ 25 (37)
T PF12151_consen 17 GEWNGQWCT 25 (37)
T ss_dssp SEEEEEEEE
T ss_pred CcccceeEE
Confidence 358888876
No 15
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.68 E-value=2.9e+02 Score=22.60 Aligned_cols=55 Identities=24% Similarity=0.593 Sum_probs=30.4
Q ss_pred cceeEEEEEEEEecCCceEEEEEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHH
Q psy13236 163 WNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLI 226 (280)
Q Consensus 163 wnG~WrS~w~~~~~~~~~~l~G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I 226 (280)
||..----+.++..+......|.++ .||.|++ +=.++|. +.+++ ..++.+|++++
T Consensus 1 wn~~rldlf~~s~p~e~lef~gvmr---f~~qd~~-~k~atK~----VrVsS-~~tt~eVI~~L 55 (112)
T cd01782 1 WNANRLDLFHLSYPTEDLEFHGVMR---FYFQDGG-EKVATKC----IRVSS-TATTRDVIDTL 55 (112)
T ss_pred CCccccceEeecCCCcccEEeeEEE---EEEEcCC-CcEEEEE----EEEec-CCCHHHHHHHH
Confidence 3333333334443444577888776 5999988 3334444 44443 34566776654
No 16
>PF12466 GDH_N: Glutamate dehydrogenase N terminal; InterPro: IPR024727 Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia []. This entry represents a domain found in the N-terminal region of a bacterial family of putative GDHs.
Probab=23.57 E-value=30 Score=24.94 Aligned_cols=16 Identities=38% Similarity=0.764 Sum_probs=13.7
Q ss_pred hHHHhhhhhcCCCCCc
Q psy13236 246 DTTFKALRRQLPVTRM 261 (280)
Q Consensus 246 e~~FK~LRR~LPVTR~ 261 (280)
|-.|-+||.+-|+.||
T Consensus 36 epVfaALRkryPaa~Q 51 (60)
T PF12466_consen 36 EPVFAALRKRYPAARQ 51 (60)
T ss_pred hHHHHHHHHhCcHHHH
Confidence 3479999999999887
No 17
>PHA02633 hypothetical protein; Provisional
Probab=22.97 E-value=1.8e+02 Score=21.50 Aligned_cols=20 Identities=5% Similarity=0.039 Sum_probs=17.0
Q ss_pred eEEEEEEEEeEEEEeeceEE
Q psy13236 180 VEVKGNLKVQVHYYEDGNVQ 199 (280)
Q Consensus 180 ~~l~G~I~v~vHYyEdGNVq 199 (280)
..-+|+|.++||=.+++||-
T Consensus 42 ~c~~~si~l~V~~~~~~~ip 61 (63)
T PHA02633 42 YSDMMKFDLCICLRIESNID 61 (63)
T ss_pred eeEEEEEEEEEeeccccccc
Confidence 45579999999999999984
No 18
>PF09906 DUF2135: Uncharacterized protein conserved in bacteria (DUF2135); InterPro: IPR019220 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.75 E-value=47 Score=23.03 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.8
Q ss_pred EEEEEEEeEEEEeeceEE
Q psy13236 182 VKGNLKVQVHYYEDGNVQ 199 (280)
Q Consensus 182 l~G~I~v~vHYyEdGNVq 199 (280)
+.|.=+|.||||-+++-.
T Consensus 2 ~~G~Y~VyVnYyg~~~~~ 19 (50)
T PF09906_consen 2 PPGTYLVYVNYYGNRSQS 19 (50)
T ss_pred CCceEEEEEEeccCCCcC
Confidence 368899999999998877
No 19
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=20.14 E-value=1.3e+02 Score=24.01 Aligned_cols=35 Identities=14% Similarity=0.400 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHhhhcCCCCChHHHHHHHhhccCCC
Q psy13236 3 TDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNND 37 (280)
Q Consensus 3 s~~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d 37 (280)
|+-++.+.+..|+.-|-||.++.+++.+..|.-.|
T Consensus 16 S~~QRe~Fl~~Lv~ka~p~~v~~Ll~~l~~l~v~d 50 (98)
T PF14969_consen 16 SELQREDFLQDLVEKAVPGKVNGLLDSLENLSVQD 50 (98)
T ss_pred CHHHHHHHHHHHHHHhccchHHHHHHHHHhCcCCC
Confidence 56788999999999999999999999999885533
Done!