Query psy13236
Match_columns 280
No_of_seqs 111 out of 229
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:38:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4akr_A F-actin-capping protein 100.0 4E-108 1E-112 756.3 26.8 277 1-279 1-281 (281)
2 3aa0_A F-actin-capping protein 100.0 1.4E-92 4.7E-97 655.5 27.2 280 1-280 7-286 (286)
3 3aa0_B F-actin-capping protein 98.6 3.6E-05 1.2E-09 69.0 24.5 218 2-242 1-233 (244)
4 3lk4_B F-actin-capping protein 98.6 1.8E-05 6.1E-10 72.0 22.2 238 5-261 3-252 (277)
5 4akr_B F-actin-capping protein 98.3 0.00023 7.7E-09 65.1 23.3 238 5-260 21-271 (290)
6 1s0p_A CAP, adenylyl cyclase-a 52.5 6.3 0.00022 33.4 2.1 17 118-134 147-163 (176)
7 4hw4_A Induced myeloid leukemi 28.7 13 0.00043 30.7 0.1 22 239-260 48-69 (157)
8 3rco_A Tudor domain-containing 27.7 56 0.0019 24.5 3.6 40 1-40 8-48 (89)
9 3pk1_A Induced myeloid leukemi 25.8 18 0.00063 30.8 0.7 23 238-260 80-102 (189)
10 3sp7_A BCL-2-like protein 1; a 24.7 17 0.00059 30.4 0.3 32 239-270 58-105 (172)
11 4aq3_A Apoptosis regulator BCL 21.6 35 0.0012 28.4 1.6 10 261-270 102-111 (169)
No 1
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=100.00 E-value=3.6e-108 Score=756.34 Aligned_cols=277 Identities=36% Similarity=0.676 Sum_probs=255.9
Q ss_pred CCChHHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeCCCCCCeEEccccccCCCe
Q psy13236 1 MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGR 80 (280)
Q Consensus 1 ~~s~~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~~~~~~viis~~n~l~~~~ 80 (280)
|.+.+||++||++||++||||||++|++|||.|++||.++++++++||++||++||+||++||.+ ||||+||+++++|
T Consensus 1 m~~~~ek~~i~~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~~~~a~~~Yn~~q~~~v~~~g~~--viis~~n~l~~~r 78 (281)
T 4akr_A 1 MASNQELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGS--ALITKEGEISNNE 78 (281)
T ss_dssp -CCHHHHHHHHHHHHHTCCTTCHHHHHHHHHTTCSCTTTTTTTHHHHHHHHHHHHTCEEEETTEE--EECCSTTEEETTE
T ss_pred CCchHHHHHHHHHHHHcCCCchHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHccEEEEeCCCc--EEEeeccccCCCe
Confidence 66779999999999999999999999999999999999999999999999999999999999953 9999999999999
Q ss_pred eeeCCCCeeEEEeccceeeeccccCC--CCCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecC
Q psy13236 81 FYDPRSKQSFKFDHLRIEASDLESWE--PDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQ 158 (280)
Q Consensus 81 y~DP~~~~~F~~Dhl~~~~~d~e~~~--~~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~n 158 (280)
||||+++++|+|||++++|+|++|++ ++..+|+||.+|+++|.+||++|||+|+|+|||++.++...|+|||+|++||
T Consensus 79 y~Dp~~k~sF~~DHl~~~a~d~~~~~~~~~~~~e~~R~al~~~l~~Yv~~hYp~g~~~Vy~~~~~~~~~l~i~I~~~k~n 158 (281)
T 4akr_A 79 YLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYK 158 (281)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSCSCGGGHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEccCCCeEEEEeccCCEEcCcccccccCccchHHHHHHHHHHHHHHHHhhCCCCcEEEecccCCCCcEEEEEEEeCccC
Confidence 99999999999999999999999998 7777999999999999999999999999999999877666899999999999
Q ss_pred CCCccceeEEEEEEEEecCCceEEE--EEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHHHHHHHHHH
Q psy13236 159 PKNYWNGRWRSYWTINIEGNNVEVK--GNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQA 236 (280)
Q Consensus 159 p~NfwnG~WrS~w~~~~~~~~~~l~--G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~ 236 (280)
|+|||||||||+|+|++++.+++|+ |+|+|+|||||||||||+++|+++.+++++++.++|++||+.|+++|++||++
T Consensus 159 p~NFwnGrWrS~w~~~~~~~~~~l~~~G~I~V~vHYyEDGNVqL~s~k~~~~s~~~~~~~~~a~~iv~~I~~~E~~~q~~ 238 (281)
T 4akr_A 159 PNAFYSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTA 238 (281)
T ss_dssp GGGTEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCceEEEEEEEecCCCCeEEECCEEEEEEEEeecceEEEEeccccccccccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999866567888 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHhhhhhcCCCCCccccccceeeeeecccccC
Q psy13236 237 ISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKN 279 (280)
Q Consensus 237 L~~~~~~lse~~FK~LRR~LPVTR~KidW~ki~~yrlg~d~~~ 279 (280)
|+++|++||+++||+||||||||||||||+||++||||+|+++
T Consensus 239 l~~~~~~ls~~tfK~LRR~LPvTRtKidW~ki~~yrlg~d~~~ 281 (281)
T 4akr_A 239 LDNNYSTMGDTTFKALRRALPINRTKINWQKVKNFKIANELNK 281 (281)
T ss_dssp HHHHHHHHHHTTTTTTSCSSCTTSCCCCTTCC-----------
T ss_pred HHHHHHHhCHHHHHHhhccCCCCCCcccccccccchhhhhhcC
Confidence 9999999999999999999999999999999999999999964
No 2
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=100.00 E-value=1.4e-92 Score=655.55 Aligned_cols=280 Identities=60% Similarity=0.981 Sum_probs=259.0
Q ss_pred CCChHHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeCCCCCCeEEccccccCCCe
Q psy13236 1 MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGR 80 (280)
Q Consensus 1 ~~s~~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~~~~~~viis~~n~l~~~~ 80 (280)
+||+++|++||.+||++|||||+++|++||+.|++|+.++++.+++|+++||++||+|+++||.+++||||+||+++++|
T Consensus 7 ~ms~~~k~~ia~~ll~~aPPge~~~v~~Dl~~L~~dd~ll~~~l~~a~~~yn~dq~~pl~v~~~~~~~li~~yn~~~~~~ 86 (286)
T 3aa0_A 7 RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGR 86 (286)
T ss_dssp CCCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHTTCEECCTTSSSCEECCGGGEEETTE
T ss_pred ccChHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcceeEEecCCCCcEEEEeccccCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred eeeCCCCeeEEEeccceeeeccccCCCCCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecCCC
Q psy13236 81 FYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPK 160 (280)
Q Consensus 81 y~DP~~~~~F~~Dhl~~~~~d~e~~~~~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~ 160 (280)
|+||+++++|+|||++++++|++|+.++..++.+|.+|+++|.+|+++|||+|+|+||+.+.++...|++||++++|||+
T Consensus 87 Y~dp~s~~~f~~Dh~~~~~~d~~~~~ps~~l~~~r~~~~~~l~~Y~~~~Y~~g~~sVY~~d~e~~~~~a~~I~~~k~~~~ 166 (286)
T 3aa0_A 87 FLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPK 166 (286)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCCCTTHHHHHHHHHHHHHHHHHHSSSCEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred eeCcccCceEEeecccceeccCCCCCCchhhHHHHHHHHHHHHHHHHHHcCCCceEEEecccCCCceEEEEEEEeccCCc
Confidence 99999999999999999999999987777799999999999999999999999999999865554569999999999999
Q ss_pred CccceeEEEEEEEEecCCceEEEEEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13236 161 NYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISEN 240 (280)
Q Consensus 161 NfwnG~WrS~w~~~~~~~~~~l~G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~~~ 240 (280)
|||||+|||.|+|++.+.+.+|+|+|+|++||||||||||+++|+++.+++++++.+.|++|++.|+++|++||.+|+++
T Consensus 167 nfw~G~W~Si~~~~v~~~~~~l~G~i~v~vHY~EdGNV~L~~~k~~~~~~~~~~~~~~a~~i~~~Ie~~E~~~~~~L~e~ 246 (286)
T 3aa0_A 167 NFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISEN 246 (286)
T ss_dssp GTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCceeeeEEEEEeccccceEEEEEEEEEEEecCceEEEeeccccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876458999999999999999999999999999999998888899999999999999999999999
Q ss_pred HhcCChHHHhhhhhcCCCCCccccccceeeeeecccccCC
Q psy13236 241 YMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKNQ 280 (280)
Q Consensus 241 ~~~lse~~FK~LRR~LPVTR~KidW~ki~~yrlg~d~~~~ 280 (280)
|.+|++++||+|||+|||||+||||+||++||||+|++++
T Consensus 247 y~~ls~~~fk~LRR~LPvtr~ki~W~ki~~y~lg~d~~~~ 286 (286)
T 3aa0_A 247 YQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQNA 286 (286)
T ss_dssp HHHHHHTHHHHHCCSSCTTSSCCCHHHHTC----------
T ss_pred HHHhhHHHHHHHhccCCccccccchhhhcceehhhhhccC
Confidence 9999999999999999999999999999999999999864
No 3
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=98.59 E-value=3.6e-05 Score=69.00 Aligned_cols=218 Identities=15% Similarity=0.262 Sum_probs=137.8
Q ss_pred CChHHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEe-CCCCCCeEEccccccCCCe
Q psy13236 2 LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKL-NNSDLPVLISEHNDLGNGR 80 (280)
Q Consensus 2 ~s~~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~-~~~~~~viis~~n~l~~~~ 80 (280)
|+ +++.+-+-+|+..=||-++..-+++|..|+++ + .+.+.. ..+|-..|.- +.....+|.|.||+ .|..
T Consensus 1 m~-~~~~d~aLdL~RRLpP~~ie~nl~~l~~L~Pd--l-~edLLs-----sVDqPLki~~d~~~~k~yL~CdYNR-DgDS 70 (244)
T 3aa0_B 1 MS-DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPS--L-CEDLLS-----SVDQPLKIARDKVVGKDYLLCDYNR-DGDS 70 (244)
T ss_dssp -C-HHHHHHHHHHHTTSCGGGHHHHHHHHHHHCGG--G-HHHHHH-----HSCCCCEEEEETTTTEEEEECGGGE-ETTE
T ss_pred CC-chHHHHHHHHHhcCCHHHHHHHHHHHHHhChH--H-HHHHHh-----ccCCcceEeeccccCCeeeeecccC-CCcc
Confidence 34 68899999999999999999999999999973 2 222222 2345544444 33457799999998 5555
Q ss_pred eeeCCCCeeEEEeccceeeeccccCCCCCCchHHHH---HHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEE-Eeee
Q psy13236 81 FYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRS---LIELELDTYTASHYKNGTSSVFAKKQGETLQINACI-EDHQ 156 (280)
Q Consensus 81 y~DP~~~~~F~~Dhl~~~~~d~e~~~~~~~~e~~R~---al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I-~~~k 156 (280)
|=-|=+++-|- - ..| .+. + .+.+|+ ...+++..|.+-+|-+|+.+||-=+.+.. ++-|+ .-+.
T Consensus 71 YRSPwSN~Y~P---~---~~d-g~~--P--S~~LR~LEi~aN~~Fd~Yr~lYyeGGvSSVYlWdld~g--Fag~vLiKK~ 137 (244)
T 3aa0_B 71 YRSPWSNKYDP---P---LED-GAM--P--SARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHG--FAGVILIKKA 137 (244)
T ss_dssp EECTTTCCEES---C---CSS-CCC--C--CHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETTE--EEEEEEEEEE
T ss_pred ccCCCCCCcCC---C---CCC-CCC--C--hHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCC--ceEEEEEEec
Confidence 54444443222 0 001 112 2 344554 45569999999999999999996544443 44333 3333
Q ss_pred cCCCCccceeEEEEEEEEecC---C---ceEEEEEEEEeEEEEee--ceEEEEeee--eeeeceeecCchhhHHHHHHHH
Q psy13236 157 FQPKNYWNGRWRSYWTINIEG---N---NVEVKGNLKVQVHYYED--GNVQLVSSK--DIKETVVVTSEEQTAREIVKLI 226 (280)
Q Consensus 157 ~np~NfwnG~WrS~w~~~~~~---~---~~~l~G~I~v~vHYyEd--GNVqL~~~k--~~~~~~~~~~~~~~a~~iv~~I 226 (280)
-++.+.=.|.|-|.=+|.+.. + .-.|+.+|-+..-==.+ |.+.|..+- .++...++++...-...|=+.|
T Consensus 138 ~~~~~~~~G~WdSiHV~Ev~~~~s~~~a~YklTSTvml~l~~~~~~~g~~~LsGsltRq~E~~~~v~~~~~Hi~NiG~mI 217 (244)
T 3aa0_B 138 GDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLV 217 (244)
T ss_dssp CCTTSSEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEECSSSSCHHHHHHHHH
T ss_pred cCcccccccceeeeeEEEEeeccCCCceeEEEeeEEEEEeccCCCCcccEecceeeeehhhcccccCCChhHHHHHHHHH
Confidence 456666789999999888731 1 23466666443322111 444443322 2233344544444567888999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy13236 227 EESETAYQQAISENYM 242 (280)
Q Consensus 227 ~~~E~~~q~~L~~~~~ 242 (280)
++.|+.+-..|++-|=
T Consensus 218 EdmE~~~R~~L~~VYf 233 (244)
T 3aa0_B 218 EDMENKIRSTLNEIYF 233 (244)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999663
No 4
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B
Probab=98.56 E-value=1.8e-05 Score=72.00 Aligned_cols=238 Identities=15% Similarity=0.255 Sum_probs=146.2
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeC-CCCCCeEEccccccCCCeeee
Q psy13236 5 QEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLN-NSDLPVLISEHNDLGNGRFYD 83 (280)
Q Consensus 5 ~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~-~~~~~viis~~n~l~~~~y~D 83 (280)
+++.+-+=+|+..=||-.+.+=+++|..|+++ +.+-+.. .++|-.-|.-+ .....+|.|.||+ .|..|=-
T Consensus 3 ~~~~daaLdLlRRLpP~~ie~nl~~l~~L~P~---L~edLLs-----sVDqPLki~~d~~~~k~yL~CDYNR-DgDSYRS 73 (277)
T 3lk4_B 3 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPS---LCEDLLS-----SVDQPLKIARDKVVGKDYLLCDYNR-DGDSYRS 73 (277)
T ss_dssp CCHHHHHHHHHTTSCGGGHHHHHHHHHHHCGG---GHHHHHH-----HSCCCCEEEEETTTTEEEEECGGGE-ETTEEEC
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHhhChH---hHHHHHH-----hCCcCceEeEccccCCeeEeecccC-CCccccC
Confidence 34689999999999999999999999999972 2233332 24555544443 3346799999998 4444444
Q ss_pred CCCCeeEEEeccceeeeccccCCCCCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEee-ecCCCCc
Q psy13236 84 PRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDH-QFQPKNY 162 (280)
Q Consensus 84 P~~~~~F~~Dhl~~~~~d~e~~~~~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~-k~np~Nf 162 (280)
|=+++ ||.- ..| .+++. +.+-.+-....+++..|..-+|-+|+++||-=+.++. ++-|+-=. .-++.+-
T Consensus 74 PwSNk---Y~Pp---l~d-g~~PS-~~LRkLEi~aN~aFd~Yr~lYYeGGvSSVYlWdld~g--FagvvLiKK~~~~~~~ 143 (277)
T 3lk4_B 74 PWSNK---YDPP---LED-GAMPS-ARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHG--FAGVILIKKAGDGSKK 143 (277)
T ss_dssp TTTCC---EESC---CSS-CCCCC-HHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETTE--EEEEEEEEEECCCGGG
T ss_pred CCcCC---cCCC---CcC-CCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEecCCC--eEEEEEEEecCCCccc
Confidence 43332 1111 001 12221 1233333457788999999999999999996543443 44333322 2334344
Q ss_pred cceeEEEEEEEEecC---C---ceEEEEEEEEeEEEEe--eceEEEEee--eeeeeceeecCchhhHHHHHHHHHHHHHH
Q psy13236 163 WNGRWRSYWTINIEG---N---NVEVKGNLKVQVHYYE--DGNVQLVSS--KDIKETVVVTSEEQTAREIVKLIEESETA 232 (280)
Q Consensus 163 wnG~WrS~w~~~~~~---~---~~~l~G~I~v~vHYyE--dGNVqL~~~--k~~~~~~~~~~~~~~a~~iv~~I~~~E~~ 232 (280)
=.|.|-|.=+|.+.. + .-.|+.+|-+.+-==. .|.+.|..+ +..+...++++...-...|=+.|++.|++
T Consensus 144 ~~G~WDSIHV~Ev~~~~~~~~~~YklTSTVmL~l~~~~~~~g~~~LsGsltRq~e~~~~v~~~~~Hi~NiG~mVEdmE~~ 223 (277)
T 3lk4_B 144 IKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENK 223 (277)
T ss_dssp EEEEEEEEEEEEEEC----CEEEEEEEEEEEEEEEECCSSSSEEEEEEEEEEEEEEEEECSSSSCHHHHHHHHHHHHHHH
T ss_pred cccceeeeEEEEEeeccCCceeEEEEeEEEEEEEEcCCCCcceEeeceeeeeeccccccCCCCchHHHHHHHHHHHHHHH
Confidence 589999999999853 1 3457777765543112 244554332 23333345554455677888999999999
Q ss_pred HHHHHHHHHhcCChHHHhhhhhcCCCCCc
Q psy13236 233 YQQAISENYMTMSDTTFKALRRQLPVTRM 261 (280)
Q Consensus 233 ~q~~L~~~~~~lse~~FK~LRR~LPVTR~ 261 (280)
+-..|++-|=.=...-...||..-|+.-.
T Consensus 224 mRn~L~~VYFgKtkdIv~~lRs~~~~~~~ 252 (277)
T 3lk4_B 224 IRSTLNEIYFGKTKDIVNGLRSIDAIPDN 252 (277)
T ss_dssp HHHHHHHHHHTHHHHHHHTTC--------
T ss_pred HHHHHHHHhhHHHHHHHHHhhcCCCchhh
Confidence 99999999875555577899988887754
No 5
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=98.33 E-value=0.00023 Score=65.13 Aligned_cols=238 Identities=14% Similarity=0.241 Sum_probs=148.5
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEe-CCCCCCeEEccccccCCCeeee
Q psy13236 5 QEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKL-NNSDLPVLISEHNDLGNGRFYD 83 (280)
Q Consensus 5 ~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~-~~~~~~viis~~n~l~~~~y~D 83 (280)
++|.+-+-+|+..=||-.+..-+++|..|.++ +.+.+.. .++|-..|.- +.....+|.|.||+ .|..|=-
T Consensus 21 ~~~~daaLdLlRRLpP~~ie~nL~~Li~L~Pd---l~edLLs-----sVDqPLki~~d~~~~k~yL~CDYNR-DGDSYRS 91 (290)
T 4akr_B 21 EKQLSCCLDLMRRLPPSQIEDNLAGLLDLVPD---LTEDLLS-----SIDQPLKVAYDAVSKKDYLLCDYNR-DADSYRS 91 (290)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHHHCGG---GHHHHHH-----HCCCCCEEEEETTTTEEEEECGGGE-ETTEEEC
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHhhChH---hHHHHHH-----hCCCcceEeEccccCCeEEeecccC-CCccccC
Confidence 57889999999999999999999999999973 2233322 2445554444 33446799999998 5555555
Q ss_pred CCCCeeEEEeccceeeeccccCCCCCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecCCCC--
Q psy13236 84 PRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKN-- 161 (280)
Q Consensus 84 P~~~~~F~~Dhl~~~~~d~e~~~~~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~N-- 161 (280)
|=+++=| .- ..| .+++. +.+-.+-.+..+++..|-+-+|-+|+++||-=+.++.+.-++.| -..-.+++
T Consensus 92 PwSNkY~---Pp---l~d-g~~PS-~~LRkLEi~aN~aFd~Yr~lYYeGGvSSVYlWdld~gFagvvLi-KK~~~~~~~g 162 (290)
T 4akr_B 92 PWSNKYD---PP---LSG-ACYPS-SKLRDIEVQANEIFEIYLNLYFEGGVSSVYCWDLDDNFAAVVLM-KKTQDQSKKG 162 (290)
T ss_dssp TTTCCEE---SC---CSS-CCCCC-HHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETTEEEEEEEE-EEEEC-----
T ss_pred CCCCCcC---CC---CCC-CCCCh-HHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEEecCCCceEEEEE-EeccCccccc
Confidence 5544322 10 001 12211 11233334577889999999999999999965444433333322 22222222
Q ss_pred -ccceeEEEEEEEEecCC-----ceEEEEEEEEeEEEEe--eceEEEEee--eeeeeceeecCchhhHHHHHHHHHHHHH
Q psy13236 162 -YWNGRWRSYWTINIEGN-----NVEVKGNLKVQVHYYE--DGNVQLVSS--KDIKETVVVTSEEQTAREIVKLIEESET 231 (280)
Q Consensus 162 -fwnG~WrS~w~~~~~~~-----~~~l~G~I~v~vHYyE--dGNVqL~~~--k~~~~~~~~~~~~~~a~~iv~~I~~~E~ 231 (280)
-=.|.|-|.=+|.+... .-.|+.+|-+.+--=. .|.+.|..+ +..+..+++++...-...|=+.|++.|+
T Consensus 163 ~~~~G~WDSIHV~Ev~~~~~~~a~YklTSTVmL~L~t~~~~~g~~~LsGslTRq~e~~~~v~d~~~HI~NiG~mVEdmE~ 242 (290)
T 4akr_B 163 QPMRGTWDSIHVVEVKLGKKDKAVYKLTSTVMLSIETDNDNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDMES 242 (290)
T ss_dssp -CEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred cCCCCceeeeEEEEEeecCCCceEEEEeEEEEEEEecCCCCCceEeeeeeeeeecccccccCCCchHHHHHHHHHHHHHH
Confidence 34899999999987431 2347777765442112 233443322 2223334555445567788899999999
Q ss_pred HHHHHHHHHHhcCChHHHhhhhhcCCCCC
Q psy13236 232 AYQQAISENYMTMSDTTFKALRRQLPVTR 260 (280)
Q Consensus 232 ~~q~~L~~~~~~lse~~FK~LRR~LPVTR 260 (280)
++-..|++-|=.=...-.-.||-+-|+.-
T Consensus 243 kmRn~L~eVYFgKtkdIv~~lRs~~~~~~ 271 (290)
T 4akr_B 243 KLRQTLETIYFGKTKEVVNTLRNATGNSE 271 (290)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHSCTTCCC-
T ss_pred HHHHHHHHHhhHHHHHHHHhhccCCcchh
Confidence 99999999987554556668887777764
No 6
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=52.53 E-value=6.3 Score=33.39 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhhcCCce
Q psy13236 118 IELELDTYTASHYKNGT 134 (280)
Q Consensus 118 l~~~l~~Yv~~hyp~g~ 134 (280)
|-++|++||++|||+|.
T Consensus 147 i~~~L~~YVK~~httGl 163 (176)
T 1s0p_A 147 FLKDLEKYIKQYHTTGL 163 (176)
T ss_dssp HHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 66999999999999883
No 7
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=28.65 E-value=13 Score=30.72 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=11.9
Q ss_pred HHHhcCChHHHhhhhhcCCCCC
Q psy13236 239 ENYMTMSDTTFKALRRQLPVTR 260 (280)
Q Consensus 239 ~~~~~lse~~FK~LRR~LPVTR 260 (280)
+.++..-+..|++|-++|.+|.
T Consensus 48 dele~~~~~~f~~m~~~L~it~ 69 (157)
T 4hw4_A 48 DGVQRNHETAFQGMLRKLDIKN 69 (157)
T ss_dssp HHHHHHTHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 3344444455666666666654
No 8
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=27.71 E-value=56 Score=24.48 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=30.5
Q ss_pred CCChHHHHHHHHHhhhcCCCC-ChHHHHHHHhhccCCCccc
Q psy13236 1 MLTDQEKVRVVSGFILHSPPG-EFNEVFNDVRGLLNNDVLL 40 (280)
Q Consensus 1 ~~s~~ek~~ii~~fi~~aPPG-E~~~V~~Dl~~l~~~d~~~ 40 (280)
|+..++-.++++.+|.++|+| -+.++.+|=|.+.+..=-+
T Consensus 8 m~~~e~V~k~iRslL~S~k~gvtl~~L~~DYr~l~G~~iP~ 48 (89)
T 3rco_A 8 MLEGDLVSKMLRAVLQSHKNGVALPRLQGEYRSLTGDWIPF 48 (89)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCEEHHHHHHHHHHHHSSCCCT
T ss_pred eccHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCCcCCh
Confidence 344556778999999999988 5678888999998854433
No 9
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens}
Probab=25.85 E-value=18 Score=30.79 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=13.4
Q ss_pred HHHHhcCChHHHhhhhhcCCCCC
Q psy13236 238 SENYMTMSDTTFKALRRQLPVTR 260 (280)
Q Consensus 238 ~~~~~~lse~~FK~LRR~LPVTR 260 (280)
-..++..-+..|++|.++|.+|.
T Consensus 80 gdEle~~~~~~F~~m~~qL~it~ 102 (189)
T 3pk1_A 80 GDGVQRNHETAFQGMLRKLDIKN 102 (189)
T ss_dssp HHHHHHHTHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444444556777777776664
No 10
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=24.74 E-value=17 Score=30.35 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=19.1
Q ss_pred HHHhcCChHHHhhhhhcCCCCC----------------ccccccceee
Q psy13236 239 ENYMTMSDTTFKALRRQLPVTR----------------MKIDWNKIVS 270 (280)
Q Consensus 239 ~~~~~lse~~FK~LRR~LPVTR----------------~KidW~ki~~ 270 (280)
+.++.+-+..|.+|.++|.+|. .-|||++|.+
T Consensus 58 delE~~~~~~f~~~~~qL~it~~~a~~~F~~Va~elF~dGinWGRIVa 105 (172)
T 3sp7_A 58 DEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVA 105 (172)
T ss_dssp HHHHHHHGGGCSCHHHHTTCCTTCCHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3344444456667777776644 3488988544
No 11
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=21.60 E-value=35 Score=28.37 Aligned_cols=10 Identities=30% Similarity=0.900 Sum_probs=7.0
Q ss_pred ccccccceee
Q psy13236 261 MKIDWNKIVS 270 (280)
Q Consensus 261 ~KidW~ki~~ 270 (280)
.-|||++|.+
T Consensus 102 dGiNWGRIVa 111 (169)
T 4aq3_A 102 DGVNWGRIVA 111 (169)
T ss_dssp TCCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 4479998654
Done!