RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13236
(280 letters)
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein,
barbed END regulation, carmil family conformational
change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A*
3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Length = 286
Score = 358 bits (919), Expect = e-125
Identities = 169/278 (60%), Positives = 206/278 (74%)
Query: 2 LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKL 61
++D+EKVR+ + FI H+PPGEFNEVFNDVR LLNND LL++ + AF QYN +Q TPVK+
Sbjct: 8 VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKI 67
Query: 62 NNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELE 121
D VLI+EH DLGNGRF DPR+K SFKFDHLR EASD + + +++ + WR +
Sbjct: 68 EGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSA 127
Query: 122 LDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVE 181
L Y HY NG +V+ K I ACIE HQFQPKN+WNGRWRS W I +
Sbjct: 128 LRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQ 187
Query: 182 VKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENY 241
V LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E YQ AISENY
Sbjct: 188 VAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENY 247
Query: 242 MTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKN 279
TMSDTTFKALRRQLPVTR KIDWNKI+SY IGKE++N
Sbjct: 248 QTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQN 285
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A
{Dictyostelium discoideum}
Length = 281
Score = 329 bits (845), Expect = e-114
Identities = 102/281 (36%), Positives = 157/281 (55%), Gaps = 6/281 (2%)
Query: 1 MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVK 60
M ++QE V++ + F+L++PP EF EV +DVR LL ++ LL F +YN Q+ V+
Sbjct: 1 MASNQELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQ 60
Query: 61 LNNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLES--WEPDNSTETWRSLI 118
+ LI++ ++ N + DP++KQ +DH++ E + S E + E +R+
Sbjct: 61 TSKG--SALITKEGEISNNEYLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAF 118
Query: 119 ELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGN 178
+ E Y +Y NG S+V+ K E ++I CI ++P +++GRWRS WT +
Sbjct: 119 DEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYKPNAFYSGRWRSVWTCTFKPG 178
Query: 179 --NVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQA 236
NV G ++V VHY+EDGNVQL + + T + TA K I ++E A
Sbjct: 179 SGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTA 238
Query: 237 ISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKEL 277
+ NY TM DTTFKALRR LP+ R KI+W K+ ++ I EL
Sbjct: 239 LDNNYSTMGDTTFKALRRALPINRTKINWQKVKNFKIANEL 279
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 8e-05
Identities = 34/259 (13%), Positives = 82/259 (31%), Gaps = 52/259 (20%)
Query: 4 DQEKV-RVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLN 62
+ +K+ ++ + P E+ ++F+ + + + + + V +N
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 63 NSDLPVLISEHNDLGNGRFYDPRSKQSFKFD-----HLRIEASDLESWEPDNSTETWRSL 117
L+ + + K + H I ++ + + ++ L
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI----VDHYNIPKTFDSD-DL 464
Query: 118 IELELDTYTASH--YKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINI 175
I LD Y SH + + + E F + + R+ I
Sbjct: 465 IPPYLDQYFYSHIGHH-----LKNIEHPE--------RMTLF-RMVFLDFRFLEQ-KIRH 509
Query: 176 EGNNVEVKG---NLKVQVHYYED-------GNVQLVSSKDIK------ETVVVTSEEQTA 219
+ G N Q+ +Y+ +LV I E ++ S+
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV--NAILDFLPKIEENLICSKY--- 564
Query: 220 REIVK--LIEESETAYQQA 236
++++ L+ E E +++A
Sbjct: 565 TDLLRIALMAEDEAIFEEA 583
Score = 34.8 bits (79), Expect = 0.036
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 190 VHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEES-ETAYQQAISE----NYMTM 244
+D ++S ++I ++ + + E Q+ + E NY +
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 245 SDTTFKALRRQLPVTRMKID-----WNKIVSYS 272
R+ +TRM I+ +N ++
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Score = 34.4 bits (78), Expect = 0.041
Identities = 48/329 (14%), Positives = 99/329 (30%), Gaps = 107/329 (32%)
Query: 15 ILHSPPGEFNEVFNDVRGLLNNDVLLK--DDVSKAFV----QYNKEQL-TPVKLNNSDLP 67
I+ S + L LL +++ + FV + N + L +P+K P
Sbjct: 54 IIMSKDAV-----SGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-P 105
Query: 68 VL-----ISEHNDLGNGRFYDPRSKQSFKFDHL-RIEA-SDLESWEPDNSTETWRSLIEL 120
+ I + + L N D Q F ++ R++ L L+EL
Sbjct: 106 SMMTRMYIEQRDRLYN----DN---QVFAKYNVSRLQPYLKLRQA-----------LLEL 147
Query: 121 ELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKN----YW------------- 163
G+ K + ++ C ++ Q K +W
Sbjct: 148 RPAKNVLIDGVLGSG-----KT--WVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 164 ------------NGRWRSYWTINIEGNNVEVKGNLK--VQVHYYEDG-----NVQ----- 199
N RS + NI+ ++ L+ ++ YE+ NVQ
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 200 ---------LVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTMSDTTFK 250
L++++ + T +++ T + +++ Y+
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--- 316
Query: 251 ALRRQLPVTRMKIDWNKIVSYSIGKELKN 279
LP + N I + +++
Sbjct: 317 ----DLPREVLTT--NPRRLSIIAESIRD 339
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.3 bits (93), Expect = 2e-04
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 38/67 (56%)
Query: 87 KQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETL 146
KQ+ K +++AS L+ + D++ L
Sbjct: 19 KQALK----KLQAS-LKLYADDSAP---------------------------------AL 40
Query: 147 QINACIE 153
I A +E
Sbjct: 41 AIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 24/73 (32%)
Query: 4 DQEKVRVVSGFIL------HSPPGEFNEVFNDVRGLLNNDV-LLKDDVSKAFVQYNKEQL 56
+ K++ + F L HS LL L+ D+ K V +N + +
Sbjct: 410 SERKLKFSNRF-LPVASPFHSH-------------LLVPASDLINKDLVKNNVSFNAKDI 455
Query: 57 -TPVK--LNNSDL 66
PV + SDL
Sbjct: 456 QIPVYDTFDGSDL 468
Score = 35.8 bits (82), Expect = 0.017
Identities = 52/349 (14%), Positives = 101/349 (28%), Gaps = 124/349 (35%)
Query: 13 GFILH----SPPGEFNEV-------FNDVRGLLNNDV------LLKDD-----VSKAFVQ 50
G++ S G+F++V F + L ND+ LL+++ +K ++
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 51 --YNKEQLTPVKLNNSDLPVLISEHNDLGNGRFY----------DPRSKQSFKFDHLRIE 98
+ + L + GN + D F+ LR
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQGNTDDY-------FEELR-- 174
Query: 99 ASDL-ESWEP------DNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINAC 151
DL +++ S ET LI LD + G L I
Sbjct: 175 --DLYQTYHVLVGDLIKFSAETLSELIRTTLD--AEKVFTQG------------LNILEW 218
Query: 152 IEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQ-VHYYEDGNVQLVSSKDIKETV 210
+E+ P + ++I + +Q HY + + +++ +
Sbjct: 219 LENPSNTPDK--------DYLLSIP---ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 211 ---------VVT-----------SEEQTAREIVKL----------------IEESETAYQ 234
+VT S + R+ + + + S
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 235 QAISENYMT-M---SDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKN 279
+E + M S+ T + ++ + T + K V S L N
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS----LVN 372
Score = 31.6 bits (71), Expect = 0.34
Identities = 42/266 (15%), Positives = 62/266 (23%), Gaps = 130/266 (48%)
Query: 30 VRGLLNNDVLLKDDVSKAFVQYNKEQLTP-VKLNNSDLP----VLISEHNDLGNGRFYD- 83
+ L +EQ+ V NS LP V IS L NG
Sbjct: 341 ISNL------------------TQEQVQDYVNKTNSHLPAGKQVEIS----LVNGA--KN 376
Query: 84 ------PRSKQSFKFDHLR-IEASDLESWEPDNS----TETWRSL-IELELDTYTA---S 128
P+S LR +A D S +E R L + S
Sbjct: 377 LVVSGPPQSLYGLNL-TLRKAKAPS----GLDQSRIPFSE--RKLKFSNRFLPVASPFHS 429
Query: 129 HYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGN-LK 187
H S + +D + NNV ++
Sbjct: 430 HLLVPASDLI-------------NKD--------------------LVKNNVSFNAKDIQ 456
Query: 188 VQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTMSDT 247
+ V+ DG D++ S + R IV I
Sbjct: 457 IPVYDTFDG-------SDLRV----LSGSISER-IVDCI--------------------- 483
Query: 248 TFKALRRQLPVTRMKIDWNKIVSYSI 273
R+ + W +
Sbjct: 484 -----------IRLPVKWETTTQFKA 498
Score = 30.4 bits (68), Expect = 0.72
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 23/69 (33%)
Query: 235 QAISENYMTMS-DTTFKALRRQLPVTRM------KIDWNK----------------IVSY 271
+ I ENY M +T + + + + ++
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 272 SIGKELKNQ 280
+ ++LK++
Sbjct: 1742 AAFEDLKSK 1750
>2p84_A ORF041; structural genomics, hypothetical protein, PSI, protein
STRU initiative, NEW YORK structural genomics research
consortiu nysgrc; 1.80A {Staphylococcus phage} SCOP:
b.172.1.1
Length = 145
Score = 28.1 bits (62), Expect = 2.0
Identities = 20/115 (17%), Positives = 30/115 (26%), Gaps = 8/115 (6%)
Query: 75 DLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGT 134
D R + + + + D I + T KN
Sbjct: 11 DRERHRTDYQKGMSYAEQQDFDMGFTIWFDHIEDLDLIEKDGTINRIVMMSTGLKDKNVK 70
Query: 135 ----SSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGN 185
S + GE + D F ++NG + Y I EV GN
Sbjct: 71 EIYESDIVRNLYGELYVV--EWLDGSFVLTEFYNGGYDHY--IIDSSTEYEVLGN 121
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha
and beta (A+B), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.141.1.1
Length = 100
Score = 27.3 bits (61), Expect = 2.4
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 172 TINIEGNNVEVKG------------NLKVQVHYYEDGNVQLVSSKDIKETV 210
I ++G V VKG N+++ + + +++ ++ +
Sbjct: 24 DITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKEL 74
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_E 4a1c_E 4a1e_E
Length = 188
Score = 27.7 bits (62), Expect = 3.2
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 172 TINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLI 226
TI + VEVKG L + +V + + + + R +++ I
Sbjct: 17 TITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADNVKLQIWQASRKERAVLQSI 71
>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer
membrane protein domain, PSI-2, protein struc
initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus
rimd 2210633}
Length = 237
Score = 27.2 bits (59), Expect = 5.4
Identities = 6/53 (11%), Positives = 24/53 (45%)
Query: 214 SEEQTAREIVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPVTRMKIDWN 266
S + EI + + + + +I+ M + + ++ R + + ++++ +
Sbjct: 1 SNAEKGLEIAQERKARDEGWGDSIATMEMILKNAQGESSTRLMRLKSLEVEGD 53
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F
1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H
Length = 191
Score = 26.9 bits (60), Expect = 6.4
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 172 TINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLI 226
T++I+ V+V G + +V + V V + + ++ +
Sbjct: 17 TVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTV 71
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold,
metallophosphodiesterase, active site mutan nucleotide
polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB:
3rl3_A* 3rl4_A*
Length = 296
Score = 26.9 bits (58), Expect = 7.8
Identities = 12/33 (36%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 129 HYKNGTSSVFAKKQGETLQINACIEDHQFQPKN 161
H GT G T INA FQP N
Sbjct: 256 HEGYGT-----MTDGYTTYINASTCTVSFQPTN 283
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 192
Score = 26.6 bits (59), Expect = 8.0
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 172 TINIEGNNVEVKG------------NLKVQVHYYEDGNVQLVSSKDIKET 209
I ++G V VKG N+++ + + +++ ++
Sbjct: 17 DITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKE 66
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase,
silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A
{Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A*
1kcd_A*
Length = 335
Score = 27.0 bits (60), Expect = 8.1
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 11/49 (22%)
Query: 143 GETLQINACIEDH-QFQ-----PKNYWNGRWRSYWTINIEGNNVEVKGN 185
G TL +N K +G I+G + G
Sbjct: 30 GNTLVLNPDKGATVTMAGDITFAKTTLDGPL-----FTIDGTGINFVGA 73
>1wdj_A Hypothetical protein TT1808; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
2.00A {Thermus thermophilus} SCOP: c.52.1.27
Length = 187
Score = 26.3 bits (57), Expect = 8.8
Identities = 5/54 (9%), Positives = 13/54 (24%), Gaps = 9/54 (16%)
Query: 153 EDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDI 206
E+ + + Y ++ VEV + + +
Sbjct: 125 EELRAKMGIYLRNGVLLGVLVDPYARAVEV---------FRPGKPPLRLEGVER 169
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H
2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H
2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Length = 180
Score = 26.3 bits (59), Expect = 8.9
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 172 TINIEGNNVEVKG---NLKVQVHYY-----EDGNVQLVSSKDIKET 209
++ + V+VKG L+V V E+G V++ D +
Sbjct: 16 SVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRH 61
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB:
1sm1_E*
Length = 212
Score = 26.4 bits (59), Expect = 9.0
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 172 TINIEGNNVEVKG---NLKVQVHYY-----EDGNVQLVSSKDIKET 209
T+N + +VKG L V + + + + D ++
Sbjct: 43 TVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKH 88
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E*
1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E*
3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Length = 185
Score = 26.3 bits (59), Expect = 9.1
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 172 TINIEGNNVEVKG---NLKVQVHYY-----EDGNVQLVSSKDIKET 209
T+N + +VKG L V + + + + D ++
Sbjct: 16 TVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKH 61
>3kv1_A Transcriptional repressor; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative, midwest center
for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio
fischeri}
Length = 267
Score = 26.7 bits (59), Expect = 9.2
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 209 TVVVTSEEQTAREIVKLIEESE 230
V+ TS A ++ L E E
Sbjct: 247 DVLATSVS-CAMALLNLAENEE 267
>3to3_A Petrobactin biosynthesis protein ASBB; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
alpha-beta structure; HET: MSE ATP; 2.38A {Bacillus
anthracis}
Length = 619
Score = 26.9 bits (59), Expect = 9.5
Identities = 8/75 (10%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 56 LTPVKLNNSD-LPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETW 114
+TP ++ + + LI ++ Y+ ++ F + I++ + + ++
Sbjct: 41 ITPARIEKEEQILFLIQGLDEDNKSVTYECYGRERITFGRISIDSLIVRVQDGKQEIQSV 100
Query: 115 RSLIELELDTYTASH 129
+E
Sbjct: 101 AQFLEEVFRVVNVEQ 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.375
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,208,707
Number of extensions: 239513
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 40
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.3 bits)