RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13236
(280 letters)
>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 275
Score = 377 bits (971), Expect = e-134
Identities = 167/274 (60%), Positives = 202/274 (73%)
Query: 2 LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKL 61
++D+EKVR+ + FI H+PPGEFNEVFNDVR LLNND LL++ + AF QYN +Q TPVK+
Sbjct: 2 VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKI 61
Query: 62 NNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELE 121
D VLI+EH DLGNGRF DPR+K SFKFDHLR EASD + + +++ + WR +
Sbjct: 62 EGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSA 121
Query: 122 LDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVE 181
L Y HY NG +V+ K I ACIE HQFQPKN+WNGRWRS W I +
Sbjct: 122 LRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQ 181
Query: 182 VKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENY 241
V LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E YQ AISENY
Sbjct: 182 VAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENY 241
Query: 242 MTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGK 275
TMSDTTFKALRRQLPVTR KIDWNKI+SY IGK
Sbjct: 242 QTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 275
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 27.9 bits (62), Expect = 0.44
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 172 TINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTARE 221
I ++G V VKG + NV+L K+ + V +E
Sbjct: 17 DITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKE 66
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 90
Score = 26.8 bits (59), Expect = 0.98
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 180 VEVKGNLKVQVHYYEDGNVQLVSSKDIKE 208
+V+ K+ V Y + GN +++ S +
Sbjct: 47 EKVESPAKIHVFYIDYGNREVLPSTRLGT 75
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 356
Score = 28.2 bits (62), Expect = 1.1
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 35 NNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFYDPRSKQSFKF 92
N + + A + +LT +K +N L ++ S +G + + +
Sbjct: 55 NLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFS----IGGWYYSNDLGVSHANY 108
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine
infectious anemia virus [TaxId: 11665]}
Length = 75
Score = 26.2 bits (58), Expect = 1.3
Identities = 4/38 (10%), Positives = 10/38 (26%)
Query: 235 QAISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYS 272
Q E Y D ++ + + ++
Sbjct: 8 QGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQ 45
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein
TDRKH {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 26.4 bits (58), Expect = 1.5
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 180 VEVKGNLKVQVHYYEDGNVQLVSSKDIKE 208
+ N + +++ + G+ KD++
Sbjct: 48 LGTLENGNLDLYFVDFGDNGDCPLKDLRA 76
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 78
Score = 25.9 bits (57), Expect = 1.5
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 172 TINIEGNNVEVK---GNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLI 226
T+N + +VK G L V + V + V S+ Q R + L
Sbjct: 12 TVNAQDGVFKVKGPKGELTVPYNTELT-----VRQDGDQLLVERPSDAQKHRALHGLT 64
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 26.4 bits (58), Expect = 2.0
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 172 TINIEGNNVEVKGNLKVQVHYYED--GNVQLVSSKDIKETVVVTSEEQTAREIVKLIEES 229
T+NI +E+ ++ + D ++ + I ++++ E Q + +
Sbjct: 1 TMNITSKQMEITPAIR---QHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPN 57
Query: 230 ETAYQQAISENYMTMSDTTFKALRRQL 256
E+ T + L RQL
Sbjct: 58 GVLVASGKHEDMYTAINELINKLERQL 84
>g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase
{Potato (Solanum tuberosum) [TaxId: 4113]}
Length = 323
Score = 27.2 bits (60), Expect = 2.0
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 98 EASDLESWEPDNSTETWRSLIELELDTYTASH-YKNGTSS---VFAKKQGETLQINACIE 153
A ++S +P + E + LD AS YK SS + + + + I
Sbjct: 157 SAGSVQSNDPVYTLE----MCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEIC 212
Query: 154 DHQFQPKNY-WNGRW-RSYWTINI 175
D +F+P Y N + TI+I
Sbjct: 213 DFEFEPCGYSMNSIEGAAVSTIHI 236
>d2i06a1 e.2.1.1 (A:5-309) Replication terminator protein (Tus)
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 25.6 bits (56), Expect = 8.0
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 191 HYYEDGNVQLVSSKDIKET---VVVTSEEQTAREIVKLIEE---SETAYQQAISENYMTM 244
H + + SSK + + + +V I+ +T ++ ++
Sbjct: 72 HLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELP 131
Query: 245 SDTTFKALRRQLP 257
+ F+ + R LP
Sbjct: 132 TAARFEWVHRHLP 144
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 71
Score = 24.0 bits (52), Expect = 8.3
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 172 TINIEGNNVEVK---GNLKVQVHYY-----EDGNVQLVSSKDIKE 208
++ + V+VK G L+V V E+G V++ D +
Sbjct: 5 SVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERR 49
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 23.7 bits (51), Expect = 9.9
Identities = 4/55 (7%), Positives = 14/55 (25%), Gaps = 1/55 (1%)
Query: 172 TINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLI 226
+ ++ V+G+ ++ VS + + +
Sbjct: 12 DAEQDHLDITVEGDNGSVTRRLWYPDID-VSVDGDTVVIESDEDNAKTMSTIGTF 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.375
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,040,836
Number of extensions: 47240
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 17
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.1 bits)