BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13237
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IZN|A Chain A, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|1IZN|C Chain C, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|3LK2|A Chain A, Crystal Structure Of Capz Bound To The Uncapping Motif
From Carmil
pdb|3LK3|A Chain A, Crystal Structure Of Capz Bound To The Cpi And Csi
Uncapping Motifs From Carmil
pdb|3LK4|A Chain A, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|D Chain D, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|G Chain G, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|J Chain J, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|M Chain M, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|P Chain P, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|S Chain S, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|V Chain V, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|Y Chain Y, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|1 Chain 1, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|4 Chain 4, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|7 Chain 7, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|2KZ7|A Chain A, Solution Structure Of The Carmil Cah3aB DOMAIN BOUND TO
CAPPING Protein (Cp)
pdb|3AA0|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Carmil
pdb|3AA1|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Ckip-1
pdb|3AA6|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Cd2ap
pdb|3AA7|A Chain A, Crystal Structure Of Actin Capping Protein
pdb|3AAA|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
V-1
pdb|3AAE|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|E Chain E, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|G Chain G, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|I Chain I, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
Length = 286
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 53/73 (72%)
Query: 10 IEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQ 69
I +V LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E YQ
Sbjct: 181 ITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQ 240
Query: 70 QAISENYMIIRKT 82
AISENY + T
Sbjct: 241 TAISENYQTMSDT 253
>pdb|2KXP|A Chain A, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 275
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 53/73 (72%)
Query: 10 IEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQ 69
I +V LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E YQ
Sbjct: 175 ITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQ 234
Query: 70 QAISENYMIIRKT 82
AISENY + T
Sbjct: 235 TAISENYQTMSDT 247
>pdb|4AKR|A Chain A, Crystal Structure Of The Cytoplasmic Actin Capping Protein
Cap32_34 From Dictyostelium Discoideum
pdb|4AKR|C Chain C, Crystal Structure Of The Cytoplasmic Actin Capping Protein
Cap32_34 From Dictyostelium Discoideum
Length = 281
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 14 NVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAIS 73
NV G ++V VHY+EDGNVQL + + T + TA K I ++E A+
Sbjct: 181 NVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALD 240
Query: 74 ENYMIIRKT 82
NY + T
Sbjct: 241 NNYSTMGDT 249
>pdb|1KEY|A Chain A, Crystal Structure Of Mouse TestisBRAIN RNA-Binding
Protein (Tb-Rbp)
pdb|1KEY|B Chain B, Crystal Structure Of Mouse TestisBRAIN RNA-Binding
Protein (Tb-Rbp)
pdb|1KEY|C Chain C, Crystal Structure Of Mouse TestisBRAIN RNA-Binding
Protein (Tb-Rbp)
pdb|1KEY|D Chain D, Crystal Structure Of Mouse TestisBRAIN RNA-Binding
Protein (Tb-Rbp)
Length = 235
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 35 LVSSKDIKETV--VVTSEEQTAREIVKLIE 62
L + +DI+E + VV S EQTAREI+ L++
Sbjct: 21 LAAEQDIREEIRKVVQSLEQTAREILTLLQ 50
>pdb|1J1J|A Chain A, Crystal Structure Of Human Translin
pdb|1J1J|B Chain B, Crystal Structure Of Human Translin
pdb|1J1J|C Chain C, Crystal Structure Of Human Translin
pdb|1J1J|D Chain D, Crystal Structure Of Human Translin
Length = 240
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 35 LVSSKDIKETV--VVTSEEQTAREIVKLIE 62
L + +DI+E + VV S EQTAREI+ L++
Sbjct: 26 LAAEQDIREEIRKVVQSLEQTAREILTLLQ 55
>pdb|3PJA|A Chain A, Crystal Structure Of Human C3po Complex
pdb|3PJA|B Chain B, Crystal Structure Of Human C3po Complex
pdb|3PJA|C Chain C, Crystal Structure Of Human C3po Complex
pdb|3PJA|D Chain D, Crystal Structure Of Human C3po Complex
pdb|3PJA|E Chain E, Crystal Structure Of Human C3po Complex
pdb|3PJA|F Chain F, Crystal Structure Of Human C3po Complex
pdb|3PJA|G Chain G, Crystal Structure Of Human C3po Complex
pdb|3PJA|H Chain H, Crystal Structure Of Human C3po Complex
pdb|3PJA|I Chain I, Crystal Structure Of Human C3po Complex
pdb|3QB5|A Chain A, Human C3po Complex In The Presence Of Mnso4
pdb|3QB5|B Chain B, Human C3po Complex In The Presence Of Mnso4
pdb|3QB5|C Chain C, Human C3po Complex In The Presence Of Mnso4
Length = 228
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 35 LVSSKDIKETV--VVTSEEQTAREIVKLIE 62
L + +DI+E + VV S EQTAREI+ L++
Sbjct: 14 LAAEQDIREEIRKVVQSLEQTAREILTLLQ 43
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 60 LIEESETAYQQAISENYMIIRKTC 83
L+E+S YQQ+ NY I + C
Sbjct: 266 LLEKSRVTYQQSAERNYHIFYQIC 289
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 60 LIEESETAYQQAISENYMIIRKTC 83
L+E+S YQQ+ NY I + C
Sbjct: 267 LLEKSRVTYQQSAERNYHIFYQIC 290
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 60 LIEESETAYQQAISENYMIIRKTC 83
L+E+S YQQ+ NY I + C
Sbjct: 266 LLEKSRVTYQQSAERNYHIFYQIC 289
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 60 LIEESETAYQQAISENYMIIRKTC 83
L+E+S YQQ+ NY I + C
Sbjct: 268 LLEKSRVTYQQSAERNYHIFYQIC 291
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 60 LIEESETAYQQAISENYMIIRKTC 83
L+E+S YQQ+ NY I + C
Sbjct: 266 LLEKSRVTYQQSAERNYHIFYQIC 289
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 60 LIEESETAYQQAISENYMIIRKTC 83
L+E+S YQQ+ NY I + C
Sbjct: 262 LLEKSRVTYQQSAERNYHIFYQIC 285
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 60 LIEESETAYQQAISENYMIIRKTC 83
L+E+S YQQ+ NY I + C
Sbjct: 261 LLEKSRVTYQQSAERNYHIFYQIC 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,144,243
Number of Sequences: 62578
Number of extensions: 63799
Number of successful extensions: 236
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 28
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)