Query psy13237
Match_columns 84
No_of_seqs 107 out of 211
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:39:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4akr_A F-actin-capping protein 100.0 9.9E-32 3.4E-36 200.2 10.1 81 3-83 165-250 (281)
2 3aa0_A F-actin-capping protein 99.9 6.8E-26 2.3E-30 168.5 9.0 82 2-83 170-254 (286)
3 2qya_A Uncharacterized conserv 46.5 18 0.00063 23.7 3.1 37 28-69 31-67 (124)
4 3n72_A Putative activator of H 45.1 50 0.0017 22.1 5.3 72 5-81 78-158 (164)
5 4agh_A Mosub1, transcription c 35.6 1E+02 0.0034 20.8 5.7 48 16-69 61-109 (158)
6 2z14_A EF-hand domain-containi 33.8 68 0.0023 20.7 4.4 37 4-40 17-57 (133)
7 2wh0_Q Pkcev3, protein kinase 29.7 40 0.0014 16.7 2.1 15 59-73 13-27 (31)
8 1s3a_A NADH-ubiquinone oxidore 22.4 1.1E+02 0.0037 18.4 3.7 27 27-64 71-97 (102)
9 3l9k_W Dynein intermediate cha 22.3 70 0.0024 16.7 2.3 25 54-78 12-36 (38)
10 1usu_B AHA1; chaperone/complex 22.2 1.8E+02 0.0062 19.4 5.3 66 5-77 89-165 (170)
11 1q1o_A Cell division control p 20.8 30 0.001 21.6 0.8 13 19-31 4-16 (98)
12 3c5v_A PME-1, protein phosphat 20.2 38 0.0013 22.8 1.3 29 3-31 6-35 (316)
13 1vtp_A Na-propi, vacuolar targ 20.2 46 0.0016 16.0 1.2 18 54-71 4-21 (26)
No 1
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=99.97 E-value=9.9e-32 Score=200.24 Aligned_cols=81 Identities=30% Similarity=0.418 Sum_probs=77.2
Q ss_pred cccceeEe-e--CCCceEE--EEEEEeeEeeecccEEEEeccceecceeecCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13237 3 DRSLADFI-E--GNNVEVK--GNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYM 77 (84)
Q Consensus 3 ~~w~~~~~-~--~~~~~l~--G~I~V~vHYyEdGNVqL~s~k~~~~~~~~s~~~~~A~~iv~~I~~~E~~~q~~L~e~y~ 77 (84)
|||||.|. + +.+.+|+ |+|+|||||||||||||+++|+++.+++++++.++|++||++|+++|++||.+|+++|+
T Consensus 165 GrWrS~w~~~~~~~~~~l~~~G~I~V~vHYyEDGNVqL~s~k~~~~s~~~~~~~~~a~~iv~~I~~~E~~~q~~l~~~~~ 244 (281)
T 4akr_A 165 GRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNNYS 244 (281)
T ss_dssp EEEEEEEEEEECTTSSEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEecCCCCeEEECCEEEEEEEEeecceEEEEeccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 3 5678888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC
Q psy13237 78 IIRKTC 83 (84)
Q Consensus 78 ~Lse~t 83 (84)
+||++|
T Consensus 245 ~ls~~t 250 (281)
T 4akr_A 245 TMGDTT 250 (281)
T ss_dssp HHHHTT
T ss_pred HhCHHH
Confidence 999976
No 2
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=99.93 E-value=6.8e-26 Score=168.55 Aligned_cols=82 Identities=50% Similarity=0.721 Sum_probs=75.8
Q ss_pred CcccceeEe-e--CCCceEEEEEEEeeEeeecccEEEEeccceecceeecCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13237 2 FDRSLADFI-E--GNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMI 78 (84)
Q Consensus 2 ~~~w~~~~~-~--~~~~~l~G~I~V~vHYyEdGNVqL~s~k~~~~~~~~s~~~~~A~~iv~~I~~~E~~~q~~L~e~y~~ 78 (84)
-|||+|.|+ + +.+.+|+|+|+|+|||||||||||.++|+++.+++++++.+.|++|++.|+++|++||.+|++.|.+
T Consensus 170 ~G~W~Si~~~~v~~~~~~l~G~i~v~vHY~EdGNV~L~~~k~~~~~~~~~~~~~~a~~i~~~Ie~~E~~~~~~L~e~y~~ 249 (286)
T 3aa0_A 170 NGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQT 249 (286)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeEEEEEeccccceEEEEEEEEEEEecCceEEEeeccccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999995 3 3358999999999999999999999999999999998888899999999999999999999999999
Q ss_pred hhccC
Q psy13237 79 IRKTC 83 (84)
Q Consensus 79 Lse~t 83 (84)
|++++
T Consensus 250 ls~~~ 254 (286)
T 3aa0_A 250 MSDTT 254 (286)
T ss_dssp HHHTH
T ss_pred hhHHH
Confidence 99864
No 3
>2qya_A Uncharacterized conserved protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.17A {Methanopyrus kandleri AV19}
Probab=46.52 E-value=18 Score=23.70 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=26.1
Q ss_pred eecccEEEEeccceecceeecCchhhHHHHHHHHHHHHHHHH
Q psy13237 28 YEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQ 69 (84)
Q Consensus 28 yEdGNVqL~s~k~~~~~~~~s~~~~~A~~iv~~I~~~E~~~q 69 (84)
|++|++.|..+.++=.. .......+++.|+.++.+|.
T Consensus 31 f~eg~~~l~Vse~FYgg-----e~v~~e~~~~~L~~A~~~~~ 67 (124)
T 2qya_A 31 LKYKGRTLHISEPFYSG-----KSMEPDRAAKKIREAVQEYE 67 (124)
T ss_dssp EEETTEEEECCTTTSCC-----EEECHHHHHHHHHHHHHHHT
T ss_pred EecCCEEEEECcCccCC-----CCCCHHHHHHHHHHhhhccc
Confidence 58999999988877322 23346777888888866654
No 4
>3n72_A Putative activator of HSP90; malaria, structural genomics, heat shock, structural genomic consortium, SGC, chaperone activator; 1.77A {Plasmodium falciparum}
Probab=45.13 E-value=50 Score=22.11 Aligned_cols=72 Identities=13% Similarity=0.083 Sum_probs=36.2
Q ss_pred cceeEeeCCCceEEEEEEEeeEeeecccEEEEeccceecceeecCchhhH---------HHHHHHHHHHHHHHHHHHHHH
Q psy13237 5 SLADFIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTA---------REIVKLIEESETAYQQAISEN 75 (84)
Q Consensus 5 w~~~~~~~~~~~l~G~I~V~vHYyEdGNVqL~s~k~~~~~~~~s~~~~~A---------~~iv~~I~~~E~~~q~~L~e~ 75 (84)
|.+.+.+.+...++|+|.| .+|-+.|+.. .++...+.+..+...+ +.++..|++.=..|+.+|-+.
T Consensus 78 w~g~~~~~~~~~~~G~i~I--Pe~s~dn~e~---dd~ei~vs~~~~~~~~~~~~~~lvr~~~~~~lr~~L~~f~~~L~~~ 152 (164)
T 3n72_A 78 WLYSKKKEGKDYFGGSVEI--PDFSTFSLEE---NDYAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLKH 152 (164)
T ss_dssp EEEC-------CEEEEEEE--EEEETTHHHH---TCCCCEEC--CCSHHHHHHHHHTTTTHHHHHHHHHHTTHHHHHHHH
T ss_pred EEEEecCCCCcEEeEEEEe--ceecCCCCcc---cceEEEEEEccCCccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5555444444678998876 5666665321 2333223322221111 233556777778889999888
Q ss_pred Hhhhhc
Q psy13237 76 YMIIRK 81 (84)
Q Consensus 76 y~~Lse 81 (84)
+.+=|.
T Consensus 153 ~~~~~~ 158 (164)
T 3n72_A 153 DKNESN 158 (164)
T ss_dssp HHHHHH
T ss_pred hccccc
Confidence 876543
No 5
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=35.57 E-value=1e+02 Score=20.77 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=28.1
Q ss_pred eEEEEEEEee-EeeecccEEEEeccceecceeecCchhhHHHHHHHHHHHHHHHH
Q psy13237 16 EVKGNLKVQV-HYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQ 69 (84)
Q Consensus 16 ~l~G~I~V~v-HYyEdGNVqL~s~k~~~~~~~~s~~~~~A~~iv~~I~~~E~~~q 69 (84)
...|...|+| -|||++--.|=..|=++ |+ ...-..+++.|.+.+..++
T Consensus 61 ~fkG~~~vdIREyY~k~G~~~PgkKGIS--Ls----~~qw~~L~~~~~~I~~ai~ 109 (158)
T 4agh_A 61 QFKKMDFINIREYYEAGGEMKPGKKGIG--LT----VDQYTAFLKAIPAINAELR 109 (158)
T ss_dssp EETTEEEEEEEEEEEETTEEEEEEEEEE--EE----HHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCEEEEeEeEEcCCCcCCCccccee--cC----HHHHHHHHHHHHHHHHHHH
Confidence 4568888887 37777554555555543 22 2335666666666555543
No 6
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=33.83 E-value=68 Score=20.67 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=24.3
Q ss_pred ccceeEeeCC--CceEEEEE-EEeeEee-ecccEEEEeccc
Q psy13237 4 RSLADFIEGN--NVEVKGNL-KVQVHYY-EDGNVQLVSSKD 40 (84)
Q Consensus 4 ~w~~~~~~~~--~~~l~G~I-~V~vHYy-EdGNVqL~s~k~ 40 (84)
|+.+.|.++. +..-.+.+ ++.++|| ||+-|++..-+.
T Consensus 17 rF~a~~~d~~~e~~~e~~~~R~~~I~YyL~DdTieI~E~~~ 57 (133)
T 2z14_A 17 SFDAYLEEEVLDKSQTNYRIRYYKIYFYPEDDTIQVNEPEV 57 (133)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEETTTTEEEEECCC-
T ss_pred EEEEEEeCCCcccccccceEEEEEEEEEcCCCcEEEEecCc
Confidence 4556777542 22334455 7899998 699999987766
No 7
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=29.68 E-value=40 Score=16.70 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy13237 59 KLIEESETAYQQAIS 73 (84)
Q Consensus 59 ~~I~~~E~~~q~~L~ 73 (84)
..|+++|+.+..+|.
T Consensus 13 qeikelennirkals 27 (31)
T 2wh0_Q 13 QEIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468889999888874
No 8
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=22.44 E-value=1.1e+02 Score=18.40 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=17.4
Q ss_pred eeecccEEEEeccceecceeecCchhhHHHHHHHHHHH
Q psy13237 27 YYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEES 64 (84)
Q Consensus 27 YyEdGNVqL~s~k~~~~~~~~s~~~~~A~~iv~~I~~~ 64 (84)
+|++|..+...-+.. .+.+|.+.|..+
T Consensus 71 ~Y~~G~ek~i~l~n~-----------s~~eI~~~l~~l 97 (102)
T 1s3a_A 71 RYAFGQETNVPLNNF-----------SADQVTRALENV 97 (102)
T ss_dssp EESSCCEEEEECTTC-----------CHHHHHHHHHHH
T ss_pred EECCCCEEEEECCCC-----------CHHHHHHHHHHH
Confidence 678888766555553 356777666644
No 9
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=22.25 E-value=70 Score=16.68 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13237 54 AREIVKLIEESETAYQQAISENYMI 78 (84)
Q Consensus 54 A~~iv~~I~~~E~~~q~~L~e~y~~ 78 (84)
+.++..++...-.-.+.+|++.|.-
T Consensus 12 S~~F~~F~~rsskviERAL~e~yDi 36 (38)
T 3l9k_W 12 SENFQRFVVRAGRVIERALSENVDI 36 (38)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred CHHHHHHHHHHHHHHHHHHcccccc
Confidence 4567889999999999999998753
No 10
>1usu_B AHA1; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.83.2.1 PDB: 1usv_B
Probab=22.19 E-value=1.8e+02 Score=19.35 Aligned_cols=66 Identities=5% Similarity=0.029 Sum_probs=32.3
Q ss_pred cceeEeeCCCce---EEEEEEEeeEeeecccEEEEeccceecceeec--Cc-hhhHHHH-----HHHHHHHHHHHHHHHH
Q psy13237 5 SLADFIEGNNVE---VKGNLKVQVHYYEDGNVQLVSSKDIKETVVVT--SE-EQTAREI-----VKLIEESETAYQQAIS 73 (84)
Q Consensus 5 w~~~~~~~~~~~---l~G~I~V~vHYyEdGNVqL~s~k~~~~~~~~s--~~-~~~A~~i-----v~~I~~~E~~~q~~L~ 73 (84)
|.+.+. .+... ++|+|.| .+|-+.|- ..++...+.+. ++ .+.++++ +..|++.=..|+..|-
T Consensus 89 w~g~~~-~~~~~~~~v~G~i~I--Pe~s~d~~----~dd~e~~v~~~~~~~~~~~~k~~vr~~~~p~lr~~l~~f~~eL~ 161 (170)
T 1usu_B 89 IEGHVD-SKDGSALPFEGSINV--PEVAFDSE----ASSYQFDISIFKETSELSEAKPLIRSELLPKLRQIFQQFGKDLL 161 (170)
T ss_dssp EEEECC-C----CCEEEEEEEE--EEEETTCC----GGGCCCEEEETTCCTTSTTHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEEEC-CCCccceeeEEEEEe--ccccCCCC----CcccEEEEEEccCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444443 23356 8898765 56666651 22333233332 11 2234333 3456666677777777
Q ss_pred HHHh
Q psy13237 74 ENYM 77 (84)
Q Consensus 74 e~y~ 77 (84)
+.|.
T Consensus 162 ~~~~ 165 (170)
T 1usu_B 162 ATHG 165 (170)
T ss_dssp HHHT
T ss_pred Hhcc
Confidence 7664
No 11
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=20.84 E-value=30 Score=21.59 Aligned_cols=13 Identities=15% Similarity=0.580 Sum_probs=10.3
Q ss_pred EEEEEeeEeeecc
Q psy13237 19 GNLKVQVHYYEDG 31 (84)
Q Consensus 19 G~I~V~vHYyEdG 31 (84)
|.|+|.|||=.+.
T Consensus 4 ~sikVKv~y~~~~ 16 (98)
T 1q1o_A 4 GSILFRISYNNNS 16 (98)
T ss_dssp SCEEEEEEECSSC
T ss_pred ccEEEEEEecCcc
Confidence 5699999997653
No 12
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Probab=20.23 E-value=38 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=18.2
Q ss_pred cccceeEeeCCCceEEEE-EEEeeEeeecc
Q psy13237 3 DRSLADFIEGNNVEVKGN-LKVQVHYYEDG 31 (84)
Q Consensus 3 ~~w~~~~~~~~~~~l~G~-I~V~vHYyEdG 31 (84)
.+|...|.......+.|. -+..+|||+.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 35 (316)
T 3c5v_A 6 VPWSQYFESMEDVEVENETGKDTFRVYKSG 35 (316)
T ss_dssp CCGGGTCSEEEEEEEEETTEEEEEEEEEEC
T ss_pred CccccccCccceEEecCCcceEEEEEEecC
Confidence 356666654434556653 34678999987
No 13
>1vtp_A Na-propi, vacuolar targeting peptide; nicotiana alata proteinase inhibitors; NMR {Nicotiana alata} SCOP: j.36.2.1
Probab=20.17 E-value=46 Score=16.03 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13237 54 AREIVKLIEESETAYQQA 71 (84)
Q Consensus 54 A~~iv~~I~~~E~~~q~~ 71 (84)
+++++..+-+.|++.|.+
T Consensus 4 ~skv~eyv~eve~dl~ks 21 (26)
T 1vtp_A 4 ASKVDEYVGEVENDLQKS 21 (26)
T ss_dssp TSHHHHSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhh
Confidence 567788888999998865
Done!