RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13237
(84 letters)
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein,
barbed END regulation, carmil family conformational
change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A*
3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Length = 286
Score = 85.9 bits (212), Expect = 3e-22
Identities = 40/67 (59%), Positives = 51/67 (76%)
Query: 10 IEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQ 69
I +V LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E YQ
Sbjct: 181 ITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQ 240
Query: 70 QAISENY 76
AISENY
Sbjct: 241 TAISENY 247
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A
{Dictyostelium discoideum}
Length = 281
Score = 78.2 bits (192), Expect = 2e-19
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 14 NVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAIS 73
NV G ++V VHY+EDGNVQL + + T + TA K I ++E A+
Sbjct: 181 NVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALD 240
Query: 74 ENYMIIRKT 82
NY + T
Sbjct: 241 NNYSTMGDT 249
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 8e-05
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 8 DFIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEES-ET 66
D + N + +D ++S ++I ++ + + E
Sbjct: 20 DILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 67 AYQQAISE----NY 76
Q+ + E NY
Sbjct: 78 MVQKFVEEVLRINY 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.027
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 3 DRSLADFIEGNNVEVKGN-LKVQVHYYEDG-NVQLVSSKDIKETVVVTSEEQTAREIV-- 58
D D + NNV +++ V+ DG +++++S I E +V + R V
Sbjct: 437 DLINKD-LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG-SISERIV----DCIIRLPVKW 490
Query: 59 -KLIEESET 66
+ T
Sbjct: 491 ETTTQFKAT 499
>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer
membrane protein domain, PSI-2, protein struc
initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus
rimd 2210633}
Length = 237
Score = 27.2 bits (59), Expect = 0.66
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 49 SEEQTAREIVKLIEESETAYQQAISENYMIIR 80
S + EI + + + + +I+ MI++
Sbjct: 1 SNAEKGLEIAQERKARDEGWGDSIATMEMILK 32
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 170
Score = 25.4 bits (55), Expect = 2.2
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 2 FDRSLADFIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETV 45
+ + L EG+ V V+ + ++ + +G V++ + V
Sbjct: 111 YGQDLDQLGEGDRVGVERTVAGELRLWVNGRDCGVAATGLPPRV 154
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 25.4 bits (56), Expect = 2.7
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 5 SLADFIEGNNVEVKGNL-------KVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREI 57
S +DF N E+ NL V+ Y DG V D + + E+ +E+
Sbjct: 384 SFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEV 443
Query: 58 VKLIEESETAYQQAISE 74
+LI ++ A+
Sbjct: 444 GELIMNYR--FKDALKR 458
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural
genomics, structural genomics consortium, SGC,
alternative splicing, RNA-binding; 1.75A {Homo sapiens}
Length = 94
Score = 24.8 bits (54), Expect = 3.1
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 15 VEVKGNLKVQVHYYEDGNVQLVSSKDIKE 43
+ N + +++ + G+ KD++
Sbjct: 50 LGTLENGNLDLYFVDFGDNGDCPLKDLRA 78
>3kv1_A Transcriptional repressor; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative, midwest center
for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio
fischeri}
Length = 267
Score = 24.8 bits (54), Expect = 3.4
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 44 TVVVTSEEQTAREIVKLIEESE 65
V+ TS A ++ L E E
Sbjct: 247 DVLATSVS-CAMALLNLAENEE 267
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal
nuclease OB fold, tudor domain, cytoplasm, HOST-virus
interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Length = 570
Score = 25.2 bits (54), Expect = 3.6
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 15 VEVKGNLKVQVHYYEDGNVQLVSSKDIKE 43
+V+ K+ V Y + GN +++ S +
Sbjct: 433 EKVESPAKIHVFYIDYGNREVLPSTRLGT 461
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 24.7 bits (53), Expect = 4.0
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 21 LKVQVHYYEDGNVQLVSSKDIKETV----VVTSEEQTARE 56
+ +QV+Y + V S D + +V+ E + +
Sbjct: 118 MAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTK 157
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: b.34.9.1
Length = 110
Score = 23.6 bits (51), Expect = 8.4
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 15 VEVKGNLKVQVHYYEDGNVQLVSSKDIKE 43
+ N + +++ + G+ KD++
Sbjct: 55 LGTLENGNLDLYFVDFGDNGDCPLKDLRA 83
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich,
flavoprotein, structural genomics protein structure
initiative; 1.83A {Streptococcus pneumoniae}
Length = 232
Score = 23.8 bits (52), Expect = 8.5
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 7 ADFIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEE 63
AD I N++ + + + E +Q V +K E+ A +++ I+
Sbjct: 184 ADLIIANDLTQISADQHRAIFVEKNQLQTVQTK-----------EEIAELLLEKIQA 229
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain,
proteolytic fragment, PSI, structural genomics; 1.42A
{Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A*
3omg_A* 2o4x_A 2e6n_A 2o4x_B
Length = 246
Score = 23.9 bits (51), Expect = 9.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 15 VEVKGNLKVQVHYYEDGNVQLVSSKDIKE 43
+V+ K+ V Y + GN +++ S +
Sbjct: 87 EKVESPAKIHVFYIDYGNREVLPSTRLGT 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.335
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,203,053
Number of extensions: 58086
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 29
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.9 bits)