RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13237
         (84 letters)



>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 275

 Score = 85.6 bits (212), Expect = 1e-22
 Identities = 39/61 (63%), Positives = 50/61 (81%)

Query: 16  EVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISEN 75
           +V   LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E  YQ AISEN
Sbjct: 181 QVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISEN 240

Query: 76  Y 76
           Y
Sbjct: 241 Y 241


>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 90

 Score = 26.0 bits (57), Expect = 0.33
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 15 VEVKGNLKVQVHYYEDGNVQLVSSKDIKE 43
           +V+   K+ V Y + GN +++ S  +  
Sbjct: 47 EKVESPAKIHVFYIDYGNREVLPSTRLGT 75


>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein
          TDRKH {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 25.3 bits (55), Expect = 0.56
 Identities = 4/29 (13%), Positives = 13/29 (44%)

Query: 15 VEVKGNLKVQVHYYEDGNVQLVSSKDIKE 43
          +    N  + +++ + G+      KD++ 
Sbjct: 48 LGTLENGNLDLYFVDFGDNGDCPLKDLRA 76


>d2grga1 d.110.10.1 (A:1-98) Uncharacterized protein YNR034W-A
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 98

 Score = 23.7 bits (51), Expect = 2.5
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 6  LADFIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIV 58
          +A+ I  +N E+ G L   V  YED      + K     +V  + +   RE V
Sbjct: 41 IAEIIRKSNAEL-GRLGYSV--YEDAQYIGHAFKKAGHFIVYFTPKNKNREGV 90


>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 87

 Score = 22.9 bits (49), Expect = 4.5
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 10 IEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTARE 56
          ++G  V VKG        +   NV+L      K+ + V       +E
Sbjct: 20 LKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKE 66


>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl
          transferase {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 60

 Score = 22.3 bits (48), Expect = 4.6
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 4  RSLADFIEGNNVEVKGNLKVQVHYYED 30
          R+L+      ++      K    YYED
Sbjct: 30 RTLSKIQSDKSLRFTQMQKAGFLYYED 56


>d1lshb_ f.7.1.1 (B:) Lipovitellin-phosvitin complex; beta-sheet
           shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId:
           30308]}
          Length = 174

 Score = 23.2 bits (50), Expect = 5.3
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 3/36 (8%)

Query: 37  SSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAI 72
               +   +   +       IVKL +   T +QQ I
Sbjct: 136 QKHQVSVILAAMTPR-RMNIIVKLPK--VTYFQQGI 168


>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3,
          TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 60

 Score = 22.1 bits (47), Expect = 7.0
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 22 KVQVHYYEDGNVQLVSSKDIKE 43
             V + + GN + V   +IK 
Sbjct: 33 TAVVKFTDYGNYEEVLLSNIKP 54


>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 414

 Score = 22.5 bits (47), Expect = 8.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 36 VSSKDIKETVVVTSEEQTAREIVKLIEE 63
          +S K    +VV    ++  R I +LI+E
Sbjct: 1  MSKKISGGSVVEMQGDEMTRIIWELIKE 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.128    0.335 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 287,908
Number of extensions: 10492
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 20
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.1 bits)