BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13239
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1U|B Chain B, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1V|A Chain A, Structure Of Full Length Grp94 With Adp Bound
pdb|2O1V|B Chain B, Structure Of Full Length Grp94 With Adp Bound
Length = 666
Score = 226 bits (577), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 100/179 (55%), Positives = 139/179 (77%), Gaps = 3/179 (1%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISAN---KEK 63
+ ESSPFVERLL+KGYE++YL E VDEY + +LPEF+GK+FQN+AKEG+ + KE
Sbjct: 460 EAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKES 519
Query: 64 MEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAH 123
EA++ ++EPLL W+ +KALKD+I KA +S+RL++SPCALVAS +GW+GNMER+ + A+
Sbjct: 520 REAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAY 579
Query: 124 QKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
Q D YY SQKKT E+NPRHPLI+++ RRVK+D +D +++A ++F+T TLR G
Sbjct: 580 QTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSG 638
>pdb|2O1T|A Chain A, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|B Chain B, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|C Chain C, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|D Chain D, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|E Chain E, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|F Chain F, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|G Chain G, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|H Chain H, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|I Chain I, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|J Chain J, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
Length = 450
Score = 226 bits (575), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 100/179 (55%), Positives = 139/179 (77%), Gaps = 3/179 (1%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISAN---KEK 63
+ ESSPFVERLL+KGYE++YL E VDEY + +LPEF+GK+FQN+AKEG+ + KE
Sbjct: 233 EAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKES 292
Query: 64 MEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAH 123
EA++ ++EPLL W+ +KALKD+I KA +S+RL++SPCALVAS +GW+GNMER+ + A+
Sbjct: 293 REAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAY 352
Query: 124 QKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
Q D YY SQKKT E+NPRHPLI+++ RRVK+D +D +++A ++F+T TLR G
Sbjct: 353 QTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSG 411
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90
From Leishmania Major, Lmjf33.0312
Length = 444
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 110/179 (61%), Gaps = 7/179 (3%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEA 66
++E+SPF+E+ R+G E+L++ E +DEY + + +FE KKF + KEG+ ++E+ +
Sbjct: 227 KLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQ 286
Query: 67 LKTQ---YEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAH 123
+ + E L K + E L D++ K +SERLS SPC LV S FGW+ +ME++ + A
Sbjct: 287 REEEKAACEKLCKTMKE-VLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQAL 345
Query: 124 QKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
+ + Q Y+ KKTME+NPRHP+I+EL RRV D D ++ ++F T L G
Sbjct: 346 RDSSMAQ---YMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSG 401
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 7/178 (3%)
Query: 8 VESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEAL 67
VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+ ++EK E
Sbjct: 482 VEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKDFELEETDEEKAERE 541
Query: 68 K--TQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQK 125
K +YEPL K L E L DQ+ K +S +L D+P A+ FGW+ NMER+ + A +
Sbjct: 542 KEIKEYEPLTKALKE-ILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALR- 599
Query: 126 ADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKD-DPEDAKATEIATMMFQTGTLREG 182
D Y+S KKT E++P+ P+I+EL +RV + +D ++ ++++T L G
Sbjct: 600 --DSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSG 655
>pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|D Chain D, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 405
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 7/178 (3%)
Query: 8 VESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEAL 67
VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+ ++EK E
Sbjct: 210 VEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKDFELEETDEEKAERE 269
Query: 68 K--TQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQK 125
K +YEPL K L E L DQ+ K +S +L D+P A+ FGW+ NMER+ + A +
Sbjct: 270 KEIKEYEPLTKALKE-ILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALR- 327
Query: 126 ADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKD-DPEDAKATEIATMMFQTGTLREG 182
D Y+S KKT E++P+ P+I+EL +RV + +D ++ ++++T L G
Sbjct: 328 --DSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSG 383
>pdb|3Q6M|A Chain A, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|B Chain B, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6M|C Chain C, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
pdb|3Q6N|A Chain A, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|B Chain B, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|C Chain C, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|D Chain D, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|E Chain E, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
pdb|3Q6N|F Chain F, Crystal Structure Of Human Mc-Hsp90 In P21 Space Group
Length = 448
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 102/178 (57%), Gaps = 5/178 (2%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEA 66
QV +S FVERL + G E++Y+IE +DEY + L EFEGK ++ KEGL + ++E+ +
Sbjct: 211 QVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKK 270
Query: 67 LKTQYEPL--LKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQ 124
+ + L + + L+ ++ K +S RL SPC +V S +GWT NMER+ + A +
Sbjct: 271 QEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALR 330
Query: 125 KADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
D Y++ KK +E+NP H +I L ++ + D D ++ ++++T L G
Sbjct: 331 ---DNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 385
>pdb|2O1W|A Chain A, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|B Chain B, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|C Chain C, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|D Chain D, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
pdb|2O1W|E Chain E, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94
Length = 506
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 42/47 (89%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKE 53
+ ESSPFVERLL+KGYE++YL E VDEY + +LPEF+GK+FQN+AKE
Sbjct: 460 EAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKE 506
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 10 SSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKT 69
SSP +E L +KG E+L L + +DE+ ++ L EF+GK FQ+++K S+ ++++
Sbjct: 443 SSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAK 502
Query: 70 QYEPLLKWLSEKA---LKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKA 126
+ E L ++ L +++ ++ RL+D+P + + M +L + A QK
Sbjct: 503 EAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKL-FAAAGQKV 561
Query: 127 DDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLRE 181
P+ KY E+NP H L+ +R D ++AK +E ++ L E
Sbjct: 562 --PEVKY------IFELNPDHVLV----KRAADTEDEAKFSEWVELLLDQALLAE 604
>pdb|3PRY|A Chain A, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|B Chain B, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|C Chain C, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
Length = 268
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 39/54 (72%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISAN 60
QV +S FVER+ ++G+E++Y+ E +DEY + L EF+GK ++ KEGL ++ N
Sbjct: 211 QVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELAEN 264
>pdb|1HK7|A Chain A, Middle Domain Of Hsp90
pdb|1HK7|B Chain B, Middle Domain Of Hsp90
Length = 288
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 8 VESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEAL 67
VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+ ++EK E
Sbjct: 210 VEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKDFELEETDEEKAERE 269
Query: 68 K--TQYEPLLKWLSE 80
K +YEPL K L E
Sbjct: 270 KEIKEYEPLTKALKE 284
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 10 SSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKT 69
SSP +E L +KG E+L L + +DE+ ++ L EF+GK FQ+++K S+ ++++
Sbjct: 443 SSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAK 502
Query: 70 QYEPLLKWLSEKA---LKDQIAKAEISERLSDSPCALVAS 106
+ E L ++ L +++ ++ RL+D+P A+V++
Sbjct: 503 EAEKALTPFIDRVKALLGERVKDVRLTHRLTDTP-AIVST 541
>pdb|1USV|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|C Chain C, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|E Chain E, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|G Chain G, The Structure Of The Complex Between Aha1 And Hsp90
Length = 260
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 8 VESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKE 53
VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+
Sbjct: 212 VEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD 257
>pdb|1USU|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90
Length = 260
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 8 VESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKE 53
VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+
Sbjct: 212 VEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD 257
>pdb|2GQ0|A Chain A, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
pdb|2GQ0|B Chain B, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
Length = 303
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 10 SSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAK 52
SSP +E L +KG E+L L + +DE+ ++ L EF+GK FQ+++K
Sbjct: 215 SSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSK 257
>pdb|1AJ0|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Dihydropteroate Synthase
pdb|1AJ2|A Chain A, Crystal Structure Of A Binary Complex Of E. Coli
Dihydropteroate Synthase
pdb|1AJZ|A Chain A, Structure Of Dihydropteroate Pyrophosphorylase
Length = 282
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 73 PLLKWLSEKALKDQIAKAEISERLSDS-PCALVASMFG 109
PLL +S K++ Q+ SERLS S CA++A+M G
Sbjct: 213 PLLVGMSRKSMIGQLLNVGPSERLSGSLACAVIAAMQG 250
>pdb|1Y6Z|A Chain A, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
Protein Pf14_0417
pdb|1Y6Z|B Chain B, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
Protein Pf14_0417
Length = 263
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 9 ESSPFVERLLRKGYEILYLIEAVDEYTLSSL 39
++SP +E+L Y++L+ +E +DE+ LSSL
Sbjct: 216 QNSPSLEKLKALNYDVLFSLEPIDEFCLSSL 246
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 13 FVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIA 51
F++RL+++ E YLIE + + L+ EG FQ I+
Sbjct: 238 FLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKIS 276
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLS 56
S F++RL+++ E YLIE + + L+ EG FQ I+ S
Sbjct: 81 SLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCS 126
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLS 56
S F++RL+++ E YLIE + + L+ EG FQ I+ S
Sbjct: 83 SLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCS 128
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLS 56
S F++RL+++ E YLIE + + L+ EG FQ I+ S
Sbjct: 123 SLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCS 168
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 148 PLIRELYRRVKDDPEDAK-ATEIATMMFQTG 177
P I++L ++V D+P+DA AT++A + Q G
Sbjct: 203 PEIQQLQQQVADNPQDAALATQLALQLHQVG 233
>pdb|3GYT|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
Strongyloides Stercoralis In Complex With Its
Physiological Ligand Dafachronic Acid Delta 4
Length = 244
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 52 KEGLSISANKEKMEALKTQYEPLL-KWLSEKALKDQIAKAEISERLSDSPCALVA 105
+EGL +KE +E L YE LL ++L I K E +R + P ALVA
Sbjct: 163 REGLVSQQDKETVEKLHRNYESLLHRYLY------SIHKEEAEQRFASIPKALVA 211
>pdb|3GYU|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
Strongyloides Stercoralis In Complex With Its
Physiological Ligand Dafachronic Acid Delta 7
Length = 244
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 52 KEGLSISANKEKMEALKTQYEPLL-KWLSEKALKDQIAKAEISERLSDSPCALVA 105
+EGL +KE +E L YE LL ++L I K E +R + P ALVA
Sbjct: 163 REGLVSQQDKETVEKLHRNYESLLHRYLY------SIHKEEAEQRFASIPKALVA 211
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 121 NAHQKADDPQRKYYLSQKKTMEVNPRH 147
N H K+D PQ YY + +T +V+ +H
Sbjct: 506 NVHNKSDKPQELYYQATVQTDKVDGKH 532
>pdb|3S1W|A Chain A, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|B Chain B, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|C Chain C, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|D Chain D, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|E Chain E, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
Length = 223
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 35 TLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTQYEPLL 75
TL S GKK+ +I +E L I +E + T+YE ++
Sbjct: 30 TLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMV 70
>pdb|3S0C|A Chain A, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|B Chain B, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|C Chain C, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|D Chain D, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|E Chain E, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S1U|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1V|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1X|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
Length = 223
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 35 TLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTQYEPLL 75
TL S GKK+ +I +E L I +E + T+YE ++
Sbjct: 30 TLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMV 70
>pdb|3LMI|A Chain A, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|B Chain B, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|C Chain C, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|D Chain D, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
Length = 307
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 6 VQVESSPFVERLLRKGYEILYLIEAVDE-YTLSSLPEFEGKKFQNIAKEGLS-ISANKEK 63
++VE PF E LR+ Y + L DE Y L + K F I E +S IS N E
Sbjct: 45 LKVERKPFAEGALREAYHTVSLGVGTDENYPLGTTT----KLFPPI--EMISPISKNNEA 98
Query: 64 MEALKTQYEPLLKWLSEKA 82
M LK + +LK ++A
Sbjct: 99 MTQLKNGTKFVLKLYKKEA 117
>pdb|3LMH|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
pdb|3LMH|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
Length = 307
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 6 VQVESSPFVERLLRKGYEILYLIEAVDE-YTLSSLPEFEGKKFQNIAKEGLS-ISANKEK 63
++VE PF E LR+ Y + L DE Y L + K F I E +S IS N E
Sbjct: 45 LKVERKPFAEGALREAYHTVSLGVGTDENYPLGTTT----KLFPPI--EMISPISKNNEA 98
Query: 64 MEALKTQYEPLLKWLSEKA 82
M LK + +LK ++A
Sbjct: 99 MTQLKNGTKFVLKLYKKEA 117
>pdb|3LKM|A Chain A, 1.6 Angstrom Crystal Structure Of The Alpha-Kinase Domain
Of Myosin Heavy Chain Kinase A Complex With Amp
pdb|3LLA|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
pdb|3LLA|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
Length = 307
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 6 VQVESSPFVERLLRKGYEILYLIEAVDE-YTLSSLPEFEGKKFQNIAKEGLS-ISANKEK 63
++VE PF E LR+ Y + L DE Y L + K F I E +S IS N E
Sbjct: 45 LKVERKPFAEGALREAYHTVSLGVGTDENYPLGTTT----KLFPPI--EMISPISKNNEA 98
Query: 64 MEALKTQYEPLLKWLSEKA 82
M LK + +LK ++A
Sbjct: 99 MTQLKNGTKFVLKLYKKEA 117
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1J|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1U|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U22|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
Length = 765
Score = 26.2 bits (56), Expect = 9.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 145 PRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
PRH ++ +KD+ ED + I + LREG
Sbjct: 575 PRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREG 612
>pdb|3PDT|A Chain A, Crystal Structure Of The C-Terminal Truncated Alpha-Kinase
Domain Of Myosin Heavy Chain Kinase
Length = 275
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 6 VQVESSPFVERLLRKGYEILYLIEAVDE-YTLSSLPEFEGKKFQNIAKEGLS-ISANKEK 63
++VE PF E LR+ Y + L DE Y L + K F I E +S IS N E
Sbjct: 45 LKVERKPFAEGALREAYHTVSLGVGTDENYPLGTTT----KLFPPI--EMISPISKNNEA 98
Query: 64 MEALKTQYEPLLKWLSEKA 82
M LK + +LK ++A
Sbjct: 99 MTQLKNGTKFVLKLYKKEA 117
>pdb|1VR9|A Chain A, Crystal Structure Of A Cbs Domain Pair/act Domain Protein
(tm0892) From Thermotoga Maritima At 1.70 A Resolution
pdb|1VR9|B Chain B, Crystal Structure Of A Cbs Domain Pair/act Domain Protein
(tm0892) From Thermotoga Maritima At 1.70 A Resolution
Length = 213
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 23 EILYLIEAVDEYTLSSLPEFEGKKFQNIAKE 53
E+L ++AVDE TL L E G K ++I KE
Sbjct: 180 EVLIKVDAVDEGTLIKLFESLGIKIESIEKE 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,977,769
Number of Sequences: 62578
Number of extensions: 183950
Number of successful extensions: 538
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 44
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)