Query psy13239
Match_columns 182
No_of_seqs 122 out of 1072
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 23:41:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00183 HSP90: Hsp90 protein; 100.0 6.7E-51 1.4E-55 370.6 16.1 175 4-182 297-474 (531)
2 KOG0019|consensus 100.0 1.3E-48 2.8E-53 351.5 14.7 174 4-182 448-624 (656)
3 PTZ00272 heat shock protein 83 100.0 2.7E-48 5.9E-53 361.4 16.3 175 4-182 470-647 (701)
4 PTZ00130 heat shock protein 90 100.0 7.8E-46 1.7E-50 346.7 16.5 174 4-182 559-735 (814)
5 KOG0020|consensus 100.0 1.9E-46 4.2E-51 331.7 8.5 181 2-182 540-723 (785)
6 PRK05218 heat shock protein 90 100.0 3.4E-38 7.3E-43 291.8 15.5 166 3-182 422-591 (613)
7 COG0326 HtpG Molecular chapero 100.0 7E-38 1.5E-42 285.5 15.1 166 3-182 432-601 (623)
8 PRK14083 HSP90 family protein; 100.0 7.8E-31 1.7E-35 241.9 14.3 158 13-182 402-570 (601)
9 PF06112 Herpes_capsid: Gammah 84.7 1.4 3E-05 34.3 3.7 35 142-176 17-60 (147)
10 KOG0541|consensus 68.3 4.6 9.9E-05 32.0 2.4 37 13-49 70-110 (171)
11 PRK03094 hypothetical protein; 65.6 5.5 0.00012 27.9 2.2 29 11-39 11-44 (80)
12 COG1844 Uncharacterized protei 64.3 23 0.00049 26.6 5.3 44 101-158 59-102 (125)
13 PF03698 UPF0180: Uncharacteri 60.2 7.8 0.00017 27.1 2.2 30 11-40 11-45 (80)
14 cd03142 GATase1_ThuA Type 1 gl 54.5 76 0.0016 26.1 7.5 57 13-80 28-87 (215)
15 KOG0019|consensus 54.4 0.32 6.9E-06 45.7 -7.2 147 16-175 452-602 (656)
16 COG4813 ThuA Trehalose utiliza 52.5 12 0.00026 30.8 2.4 56 95-157 89-146 (261)
17 COG1480 Predicted membrane-ass 49.9 9.1 0.0002 36.8 1.5 17 139-155 468-485 (700)
18 PF03033 Glyco_transf_28: Glyc 49.1 29 0.00062 25.1 3.9 37 13-53 18-54 (139)
19 PF03562 MltA: MltA specific i 41.8 10 0.00023 29.8 0.5 21 17-37 63-83 (158)
20 PF12641 Flavodoxin_3: Flavodo 38.1 1.7E+02 0.0037 22.7 6.9 36 20-55 38-78 (160)
21 PF07429 Glyco_transf_56: 4-al 38.0 32 0.0007 30.6 3.0 45 9-57 296-340 (360)
22 PF13603 tRNA-synt_1_2: Leucyl 37.2 35 0.00076 27.4 2.9 13 141-153 39-51 (185)
23 TIGR03590 PseG pseudaminic aci 36.9 1.8E+02 0.004 24.2 7.4 78 14-120 24-101 (279)
24 PF04009 DUF356: Protein of un 35.3 97 0.0021 22.9 4.6 44 101-158 58-101 (107)
25 COG4463 CtsR Transcriptional r 33.7 45 0.00098 25.9 2.8 86 71-181 28-113 (153)
26 smart00481 POLIIIAc DNA polyme 33.2 41 0.00089 21.6 2.3 20 12-31 19-38 (67)
27 PTZ00062 glutaredoxin; Provisi 31.8 49 0.0011 27.0 2.9 99 20-121 17-141 (204)
28 PF13431 TPR_17: Tetratricopep 31.2 8.3 0.00018 22.0 -1.2 16 139-154 4-19 (34)
29 COG1157 FliI Flagellar biosynt 30.3 40 0.00087 30.8 2.4 96 13-116 244-364 (441)
30 PRK11162 mltA murein transglyc 29.7 24 0.00052 31.4 0.8 21 16-36 160-180 (355)
31 COG3769 Predicted hydrolase (H 27.6 56 0.0012 27.6 2.6 21 10-30 28-48 (274)
32 PF04914 DltD_C: DltD C-termin 27.4 56 0.0012 24.8 2.4 26 13-38 41-66 (130)
33 COG0678 AHP1 Peroxiredoxin [Po 25.7 56 0.0012 25.8 2.1 28 13-40 64-91 (165)
34 PF00006 ATP-synt_ab: ATP synt 25.4 65 0.0014 26.4 2.6 24 13-36 96-119 (215)
35 cd01132 F1_ATPase_alpha F1 ATP 24.1 60 0.0013 27.8 2.2 23 13-35 152-174 (274)
36 cd03334 Fab1_TCP TCP-1 like do 23.8 47 0.001 27.8 1.6 41 13-53 122-162 (261)
37 PRK02797 4-alpha-L-fucosyltran 22.7 82 0.0018 27.7 2.8 29 10-38 258-286 (322)
38 KOG3967|consensus 22.7 71 0.0015 27.0 2.3 25 6-30 129-153 (297)
39 cd00851 MTH1175 This uncharact 22.5 88 0.0019 21.5 2.6 36 12-49 54-89 (103)
40 smart00596 PRE_C2HC PRE_C2HC d 21.5 81 0.0018 21.4 2.0 20 13-32 4-23 (69)
41 TIGR01042 V-ATPase_V1_A V-type 21.1 94 0.002 29.6 3.1 29 7-35 305-338 (591)
42 cd01134 V_A-ATPase_A V/A-type 20.3 80 0.0017 28.3 2.3 23 13-35 245-267 (369)
43 PF02579 Nitro_FeMo-Co: Dinitr 20.1 1.2E+02 0.0027 20.3 2.8 13 14-26 67-79 (94)
No 1
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=6.7e-51 Score=370.57 Aligned_cols=175 Identities=41% Similarity=0.779 Sum_probs=150.0
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCc-c--hhhhhHHHhHHhHHHHHHHHHh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSI-S--ANKEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~-~--~~k~~~~~~~~~~~~L~~~~k~ 80 (182)
+.+++++|||+|.|++||||||||+||||+|||++|++|+|++|+||+++++++ + +++...+..++++++|++|||+
T Consensus 297 s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~~~k~ 376 (531)
T PF00183_consen 297 SREEAEQSPYLEAFKKKGYEVLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTEWLKE 376 (531)
T ss_dssp SHHHHHTSGGGHHHHHCT--EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhccchhhHHhhCceEEEeCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999999999999999887 2 2344456678899999999999
Q ss_pred hhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhccCC
Q psy13239 81 KALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDD 160 (182)
Q Consensus 81 ~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~~~ 160 (182)
+|+++|.+|++|.||++|||||+++++|+|++|||||+||+++ +.+...++..++||||||+||||++|++++..+
T Consensus 377 -~L~~kV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimkaqa~~---~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d 452 (531)
T PF00183_consen 377 -LLGDKVEKVKVSNRLVDSPAVLVSSEYGWSANMERIMKAQAMA---DMSMQEYMPSKKILEINPNHPLIKKLLKLVEKD 452 (531)
T ss_dssp -HHTTSCSEEEE-SSSSSSSEEEEE-SSSB-HHHHHHHHHHHCC---STTTSSTSC--EEEEE-TTSHHHHHHHHHHHCC
T ss_pred -hhhhhhheecccccccCCcceeecccchhHHHHHHHhhhhccc---cccccccccccceeecCCCCHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999763 222234567889999999999999999998888
Q ss_pred CChHHHHHHHHHHHHhccccCC
Q psy13239 161 PEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 161 ~~~~~~~~~~~~lyd~All~~G 182 (182)
++++.++++|+||||+|+|++|
T Consensus 453 ~~d~~~~~la~~LyD~AlL~~G 474 (531)
T PF00183_consen 453 EDDELAKDLAEQLYDTALLASG 474 (531)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHhhhhhhhcC
Confidence 8888999999999999999998
No 2
>KOG0019|consensus
Probab=100.00 E-value=1.3e-48 Score=351.55 Aligned_cols=174 Identities=33% Similarity=0.633 Sum_probs=161.6
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCcc---hhhhhHHHhHHhHHHHHHHHHh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS---ANKEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~~---~~k~~~~~~~~~~~~L~~~~k~ 80 (182)
+..++++|||+|.+++||+|||||++||||+++++|.+|+|++|++|+++++++. +++.+.++.+++++.||+|||+
T Consensus 448 s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~mK~ 527 (656)
T KOG0019|consen 448 NRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWMKE 527 (656)
T ss_pred hhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999882 3345556677899999999999
Q ss_pred hhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhccCC
Q psy13239 81 KALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDD 160 (182)
Q Consensus 81 ~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~~~ 160 (182)
+|+++|.+|++|+||+++||||++++||||++|+|+|++|++ .+.+.+++|.++++|||||+||||+.|.++.+++
T Consensus 528 -iL~~kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal---~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~d 603 (656)
T KOG0019|consen 528 -ILGSKVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQAL---TDNETMGYMKAKKHLEINPDHPLVKTLRQLRESD 603 (656)
T ss_pred -HhcCceEEEEecCcccCCceEEEecccccchhHHHHHhhhhc---cccChhhhccccceeeeCCCChHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999988 5556678888999999999999999999999888
Q ss_pred CChHHHHHHHHHHHHhccccCC
Q psy13239 161 PEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 161 ~~~~~~~~~~~~lyd~All~~G 182 (182)
+++ .+++++.|||++|+|++|
T Consensus 604 k~d-~~k~lv~llfetALlssG 624 (656)
T KOG0019|consen 604 KND-TAKDLVEQLYETALISAG 624 (656)
T ss_pred cch-hHHHHHHHHHHHHHHHcC
Confidence 777 899999999999999998
No 3
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=2.7e-48 Score=361.45 Aligned_cols=175 Identities=41% Similarity=0.725 Sum_probs=151.1
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCcc--hh-hhhHHHhHHhHHHHHHHHHh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS--AN-KEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~~--~~-k~~~~~~~~~~~~L~~~~k~ 80 (182)
+.+++++|||+|.|++||||||||+||||||||++|++|+|++|+||++++++++ ++ ++..+..++++++|++|||+
T Consensus 470 s~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e~~~~~~~~~~~~~L~~~~k~ 549 (701)
T PTZ00272 470 SKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKE 549 (701)
T ss_pred CHHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccchhhhhhhHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999998872 11 22223345679999999999
Q ss_pred hhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhccCC
Q psy13239 81 KALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDD 160 (182)
Q Consensus 81 ~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~~~ 160 (182)
+|+++|.+|++|+||++||||||++++|+|++|+|||++|+++ +. +...+++.++||||||+||||++|++++..+
T Consensus 550 -~L~~kV~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~--~~-~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~ 625 (701)
T PTZ00272 550 -VLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALR--DS-SMAQYMMSKKTMELNPRHPIIKELRRRVGAD 625 (701)
T ss_pred -HhCCcccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccc--cc-cccccccCCeEEEECCCCHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999998541 11 1112456799999999999999998876555
Q ss_pred CChHHHHHHHHHHHHhccccCC
Q psy13239 161 PEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 161 ~~~~~~~~~~~~lyd~All~~G 182 (182)
++++.++++|+||||+|+|++|
T Consensus 626 ~~~~~~~~la~~LyD~AlL~~G 647 (701)
T PTZ00272 626 ENDKAVKDLVFLLFDTSLLTSG 647 (701)
T ss_pred cchHHHHHHHHHHHHHHHHhCC
Confidence 6666799999999999999997
No 4
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=7.8e-46 Score=346.71 Aligned_cols=174 Identities=33% Similarity=0.616 Sum_probs=149.9
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCcc---hhhhhHHHhHHhHHHHHHHHHh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS---ANKEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~~---~~k~~~~~~~~~~~~L~~~~k~ 80 (182)
+.+++++|||+|.|++||||||||++||||||+++|++|+|++|++|++++++++ ++++..+..++++++|++|+|+
T Consensus 559 s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~~k~ 638 (814)
T PTZ00130 559 SYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFELTEDEKKKEEKVKKMYKALIDVISD 638 (814)
T ss_pred CHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999888762 2222223345679999999999
Q ss_pred hhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhccCC
Q psy13239 81 KALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDD 160 (182)
Q Consensus 81 ~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~~~ 160 (182)
+|+++|.+|++|+||++||||||++++|+|++|+|||++|. ++.+.+.++..++||||||+||||++|+.+...+
T Consensus 639 -~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~----~~~~~~~~~~~k~iLEINp~Hpii~~L~~~~~~~ 713 (814)
T PTZ00130 639 -TLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINV----NNSDQIKAMSGQKILEINPDHPIMIDLLKRSVSN 713 (814)
T ss_pred -HhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhh----ccccccccccCCeEEEECCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999984 2222123456799999999999999998765445
Q ss_pred CChHHHHHHHHHHHHhccccCC
Q psy13239 161 PEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 161 ~~~~~~~~~~~~lyd~All~~G 182 (182)
++++.++++|++|||+|+|++|
T Consensus 714 ~~~~~~~~~a~~Lyd~AlL~~G 735 (814)
T PTZ00130 714 PKDSQLTESIKIIYQSAKLASG 735 (814)
T ss_pred cchHHHHHHHHHHHHHHHHhCC
Confidence 5566799999999999999997
No 5
>KOG0020|consensus
Probab=100.00 E-value=1.9e-46 Score=331.75 Aligned_cols=181 Identities=60% Similarity=1.020 Sum_probs=167.3
Q ss_pred CCchHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCc-ch--hhhhHHHhHHhHHHHHHHH
Q psy13239 2 KVLPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSI-SA--NKEKMEALKTQYEPLLKWL 78 (182)
Q Consensus 2 ~~~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~-~~--~k~~~~~~~~~~~~L~~~~ 78 (182)
+-|..+++.|||+|++.+|||||||+++|+||||||.|.+|+|++|++|.++++.+ +. .|+..+..+++|++|.+|+
T Consensus 540 Gssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~ 619 (785)
T KOG0020|consen 540 GSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKSEKTKESHEALEEEFEPLTKWL 619 (785)
T ss_pred CCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999999999999988 22 2445566788999999999
Q ss_pred HhhhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhcc
Q psy13239 79 SEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVK 158 (182)
Q Consensus 79 k~~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~ 158 (182)
|..+|.++|.+++||+||++|||++|++.||||++|+|||++|+++++.+.+...|+.+|+||||||+||||+.|+.++.
T Consensus 620 k~~alkd~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~ 699 (785)
T KOG0020|consen 620 KDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIA 699 (785)
T ss_pred HhhHHHHHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhh
Confidence 99888999999999999999999999999999999999999999976667666667889999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhccccCC
Q psy13239 159 DDPEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 159 ~~~~~~~~~~~~~~lyd~All~~G 182 (182)
++++++.+++.|.++|.+|.|.+|
T Consensus 700 adeeD~t~~d~A~lmf~TAtlrSG 723 (785)
T KOG0020|consen 700 ADEEDETVKDTAVLMFETATLRSG 723 (785)
T ss_pred cCcccchHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999988
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=3.4e-38 Score=291.82 Aligned_cols=166 Identities=34% Similarity=0.600 Sum_probs=144.3
Q ss_pred CchHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCcch----hhhhHHHhHHhHHHHHHHH
Q psy13239 3 VLPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISA----NKEKMEALKTQYEPLLKWL 78 (182)
Q Consensus 3 ~~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~~~----~k~~~~~~~~~~~~L~~~~ 78 (182)
.+.+++.+|||+|.|+++|+|||++++|+||+++++|.+|+|++|++|+++++++.+ ++...+..++++++|++|+
T Consensus 422 ~~~~~~~~sp~~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 501 (613)
T PRK05218 422 DSREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERL 501 (613)
T ss_pred CCHHHHHhChHHHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999886622 1222233456899999999
Q ss_pred HhhhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhcc
Q psy13239 79 SEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVK 158 (182)
Q Consensus 79 k~~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~ 158 (182)
++ .|+++|.+|++|.||+++||||+++++|++++|+|+|++++ ++ ++..+++|||||+||||++|++..
T Consensus 502 ~~-~L~~~v~~V~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~----~~-----~~~~~~~LeiNp~hplI~~L~~~~- 570 (613)
T PRK05218 502 KE-ALGDKVKDVRLSHRLTDSPACLVADEGDMSTQMEKLLKAAG----QE-----VPESKPILEINPNHPLVKKLADEA- 570 (613)
T ss_pred HH-HhcCcceEEEEeccCCCCCeEEEeCccchHHHHHHHHHhhh----hc-----ccccceEEEEcCCCHHHHHHHhcc-
Confidence 99 99999999999999999999999999999999999998872 21 223689999999999999998742
Q ss_pred CCCChHHHHHHHHHHHHhccccCC
Q psy13239 159 DDPEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 159 ~~~~~~~~~~~~~~lyd~All~~G 182 (182)
+++.++.++++|||+|+|++|
T Consensus 571 ---d~~~~~~~~~~Lyd~AlL~~G 591 (613)
T PRK05218 571 ---DEAKFKDLAELLYDQALLAEG 591 (613)
T ss_pred ---ChHHHHHHHHHHHHHHHHhCC
Confidence 233499999999999999987
No 7
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-38 Score=285.48 Aligned_cols=166 Identities=33% Similarity=0.583 Sum_probs=148.1
Q ss_pred CchHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCcc---hh-hhhHHHhHHhHHHHHHHH
Q psy13239 3 VLPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS---AN-KEKMEALKTQYEPLLKWL 78 (182)
Q Consensus 3 ~~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~~---~~-k~~~~~~~~~~~~L~~~~ 78 (182)
.+...+++|||+|.|++||||||||+|+||+|++..+.+|+|++|++|++++++++ ++ +...+..+.++++|++++
T Consensus 432 es~~~~~~sP~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 511 (623)
T COG0326 432 ESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERV 511 (623)
T ss_pred ccHHHHhcCchHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999998872 11 123455567799999999
Q ss_pred HhhhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhcc
Q psy13239 79 SEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVK 158 (182)
Q Consensus 79 k~~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~ 158 (182)
|+ +|+++|++|++|+||+++|||++++.++++.+|+|+|+++ |+.. +..++||||||+||+|++|....
T Consensus 512 k~-~L~~~vk~Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~----~~~~-----~~~k~ilEiNp~h~lv~~L~~~~- 580 (623)
T COG0326 512 KE-ILGDKVKDVRLSHRLTDSPACLTTDGADLSTQMERLLKAQ----GQEV-----PESKKILEINPNHPLVKKLASLE- 580 (623)
T ss_pred HH-HhcCccceeEeecccCCCcceeecCccchhHHHHHHHHhc----cccC-----CccccceeeCcccHHHHHHHhcc-
Confidence 99 9999999999999999999999999999999999999998 4443 25799999999999999998864
Q ss_pred CCCChHHHHHHHHHHHHhccccCC
Q psy13239 159 DDPEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 159 ~~~~~~~~~~~~~~lyd~All~~G 182 (182)
+.+.+.+++++|||+|+|++|
T Consensus 581 ---d~~~~~~~~~llydqAll~eg 601 (623)
T COG0326 581 ---DEASVADLVELLYDQALLAEG 601 (623)
T ss_pred ---cHHHHHHHHHHHHHHHHHhCC
Confidence 456799999999999999987
No 8
>PRK14083 HSP90 family protein; Provisional
Probab=99.97 E-value=7.8e-31 Score=241.85 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=123.9
Q ss_pred HHHHHHhCCCeEEEecCCchhhhhccccc-cCCcceeeccCCCCC--cchhhhhHHHhHHhHHHHHHHHHhhhhccccce
Q psy13239 13 FVERLLRKGYEILYLIEAVDEYTLSSLPE-FEGKKFQNIAKEGLS--ISANKEKMEALKTQYEPLLKWLSEKALKDQIAK 89 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iDe~~i~~l~~-~~~~~f~sV~~~~~~--~~~~k~~~~~~~~~~~~L~~~~k~~~L~~~v~~ 89 (182)
+.+.|++||+|||++++|||||++++|++ |+|++|++|+++++. +++.+ ...++++++|++|+++ +|++++.+
T Consensus 402 ~~~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~-~L~~~~~~ 477 (601)
T PRK14083 402 LAPIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEPLT---PEEELALRPFLAEARE-VLAPFGCD 477 (601)
T ss_pred HHHHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccccc---hhhHHHHHHHHHHHHH-HhCccceE
Confidence 34899999999999999999999999988 999999999998764 22111 2345679999999999 99998666
Q ss_pred E-EEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCCh--hh---h--hccCCCceEEEcCCChHHHHHHHhccCCC
Q psy13239 90 A-EISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDP--QR---K--YYLSQKKTMEVNPRHPLIRELYRRVKDDP 161 (182)
Q Consensus 90 V-~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~--~~---~--~~~~~k~~LEINp~HplI~~L~~~~~~~~ 161 (182)
| ++|.||+++||||++++ +.+|+|+|+++.-+ +++. +. + .+...+++|||||+||||++|.+. .
T Consensus 478 v~~~s~rl~~~Pa~~v~~e---~~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~----~ 549 (601)
T PRK14083 478 VVIRHFEPADLPALYLHDR---AAQHSREREEAVEE-ADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATL----G 549 (601)
T ss_pred EEEEcCCCCCCCEEEEeCc---hhHHHHHHHhhhhh-cccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhc----c
Confidence 6 77779999999999988 44778877654210 1100 00 0 233578999999999999999864 3
Q ss_pred ChHHHHHHHHHHHHhccccCC
Q psy13239 162 EDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 162 ~~~~~~~~~~~lyd~All~~G 182 (182)
+++.+++++++|||+|+|++|
T Consensus 550 d~~~~~~~~~~Lyd~AlL~~g 570 (601)
T PRK14083 550 DPKLLSRAVEALYVQALLLGH 570 (601)
T ss_pred ChHHHHHHHHHHHHHHHHhCC
Confidence 456799999999999999886
No 9
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=84.68 E-value=1.4 Score=34.31 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=25.6
Q ss_pred EEcCCChHHHHHHHhccCCCChHH---------HHHHHHHHHHh
Q psy13239 142 EVNPRHPLIRELYRRVKDDPEDAK---------ATEIATMMFQT 176 (182)
Q Consensus 142 EINp~HplI~~L~~~~~~~~~~~~---------~~~~~~~lyd~ 176 (182)
+.+|+||++.+|..+...|-.++. +=.+|++.||.
T Consensus 17 ~d~p~~plv~~~~~L~q~Nms~~~y~~a~r~YLVFL~Aq~~Yd~ 60 (147)
T PF06112_consen 17 ADYPNHPLVAKLQALPQNNMSDAEYREAQRNYLVFLIAQHCYDQ 60 (147)
T ss_pred ccCCCCHHHHHHHhhccCCCCHHHHHHhhhchhhhhhHHHHHHH
Confidence 789999999999998876544332 22567777774
No 10
>KOG0541|consensus
Probab=68.34 E-value=4.6 Score=32.02 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=30.0
Q ss_pred HHHHHHhCCCeEEEecCCchhhhhcccc----ccCCcceee
Q psy13239 13 FVERLLRKGYEILYLIEAVDEYTLSSLP----EFEGKKFQN 49 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iDe~~i~~l~----~~~~~~f~s 49 (182)
+.+.|++||+++++|..--|.|+++.-. +-+..+|.+
T Consensus 70 ~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V~f~a 110 (171)
T KOG0541|consen 70 KADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDHVKFVA 110 (171)
T ss_pred HHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccceEEEEe
Confidence 6788999999999999999999997763 334566664
No 11
>PRK03094 hypothetical protein; Provisional
Probab=65.55 E-value=5.5 Score=27.92 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=24.1
Q ss_pred CHHHHHHHhCCCeEEEec-----CCchhhhhccc
Q psy13239 11 SPFVERLLRKGYEILYLI-----EAVDEYTLSSL 39 (182)
Q Consensus 11 sP~lE~~k~kg~EVL~l~-----d~iDe~~i~~l 39 (182)
|+.-+.++++||||.=|. +++|-.+++..
T Consensus 11 s~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~ 44 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQ 44 (80)
T ss_pred HHHHHHHHHCCCEEEecCcccccCCcCEEEEeCC
Confidence 566789999999998775 45888899886
No 12
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.30 E-value=23 Score=26.65 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=33.0
Q ss_pred EEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhcc
Q psy13239 101 CALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVK 158 (182)
Q Consensus 101 a~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~ 158 (182)
+|++.-+...|....||-+.. |+-++..|-|.|++.+.|+.++.
T Consensus 59 aa~a~v~~~a~~aI~rIr~IH--------------PPAHiIVIs~r~dvy~el~~~fg 102 (125)
T COG1844 59 AAVAEVEEPASKAIGRIRKIH--------------PPAHIIVISPRHDVYKELLRLFG 102 (125)
T ss_pred hheeeecCccHHHHHHHHhcC--------------CCceEEEeCCCchHHHHHHHHhc
Confidence 455554556777877776543 56799999999999999998764
No 13
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=60.23 E-value=7.8 Score=27.12 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=25.0
Q ss_pred CHHHHHHHhCCCeEEEecCC-----chhhhhcccc
Q psy13239 11 SPFVERLLRKGYEILYLIEA-----VDEYTLSSLP 40 (182)
Q Consensus 11 sP~lE~~k~kg~EVL~l~d~-----iDe~~i~~l~ 40 (182)
|+.-+.++++||||.-|.+. +|-.+++...
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~ 45 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQD 45 (80)
T ss_pred hHHHHHHHHCCCEEEecCCccccCCcCEEEEECCC
Confidence 56778999999999999765 7888888874
No 14
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=54.54 E-value=76 Score=26.09 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=31.9
Q ss_pred HHHHHHhCCCeEEEe--cCCchhhhhccccccCCcceeeccC-CCCCcchhhhhHHHhHHhHHHHHHHHHh
Q psy13239 13 FVERLLRKGYEILYL--IEAVDEYTLSSLPEFEGKKFQNIAK-EGLSISANKEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l--~d~iDe~~i~~l~~~~~~~f~sV~~-~~~~~~~~k~~~~~~~~~~~~L~~~~k~ 80 (182)
+.+.+++.|++|-+. +||-=-+--..|..|+-.-|-+... +.+ .+++.+.|.+++++
T Consensus 28 ~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l-----------~~eq~~~l~~~V~~ 87 (215)
T cd03142 28 IAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEV-----------KDEIVERVHRRVLD 87 (215)
T ss_pred HHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcC-----------CHHHHHHHHHHHHc
Confidence 456778899999833 3321001123466676666533222 322 34456778888877
No 15
>KOG0019|consensus
Probab=54.40 E-value=0.32 Score=45.72 Aligned_cols=147 Identities=8% Similarity=-0.025 Sum_probs=93.6
Q ss_pred HHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCc-chh-h--hhHHHhHHhHHHHHHHHHhhhhccccceEE
Q psy13239 16 RLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSI-SAN-K--EKMEALKTQYEPLLKWLSEKALKDQIAKAE 91 (182)
Q Consensus 16 ~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~-~~~-k--~~~~~~~~~~~~L~~~~k~~~L~~~v~~V~ 91 (182)
.-.+-++|++..-++.+.||...+.+|-...++......+-. ..+ - ...++.+.+......-++ .|- ..
T Consensus 452 ~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe--~lc-----k~ 524 (656)
T KOG0019|consen 452 AESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFE--ELC-----KW 524 (656)
T ss_pred hhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHH--HHH-----HH
Confidence 344556777777788999999999999999999888776544 222 1 111111111122222222 121 22
Q ss_pred EeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhccCCCChHHHHHHHH
Q psy13239 92 ISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIAT 171 (182)
Q Consensus 92 vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~~~~~~~~~~~~~~ 171 (182)
+..+|.+ +|+-|+..+.++.++..|+..+. |-..++...|.++...+.||-|-+.- .+..+-+++.+.++++-.
T Consensus 525 mK~iL~~-kVekV~vs~RlvssPc~I~t~~~---gwsAnmeriMkAqal~d~s~~~ym~~--kk~lEINP~hpivk~L~~ 598 (656)
T KOG0019|consen 525 MKEILGS-KVEKVTVNNRLVSHPAMITTLEY---GWAARMERIMKAQALTDNETMGYMKA--KKHLEINPDHPLVKTLRQ 598 (656)
T ss_pred HHHHhcC-ceEEEEecCcccCCceEEEeccc---ccchhHHHHHhhhhccccChhhhccc--cceeeeCCCChHHHHHHH
Confidence 4467877 88888888899999988886652 33445556677889999999998876 223344677777777655
Q ss_pred HHHH
Q psy13239 172 MMFQ 175 (182)
Q Consensus 172 ~lyd 175 (182)
..+.
T Consensus 599 ~~~~ 602 (656)
T KOG0019|consen 599 LRES 602 (656)
T ss_pred HHhc
Confidence 5443
No 16
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=52.48 E-value=12 Score=30.78 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=32.2
Q ss_pred cCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCCh--hhhhccCCCceEEEcCCChHHHHHHHhc
Q psy13239 95 RLSDSPCALVASMFGWTGNMERLAMSNAHQKADDP--QRKYYLSQKKTMEVNPRHPLIRELYRRV 157 (182)
Q Consensus 95 rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~--~~~~~~~~k~~LEINp~HplI~~L~~~~ 157 (182)
|.-.--.+||...+.+|.-..|+| |..- .....-...++-.|||.|||.+.|=+-+
T Consensus 89 RV~EGMGLiVLHSGHfSKiFkRLM-------GTpC~LKWREAgErERvWvvnp~HPIA~GigE~~ 146 (261)
T COG4813 89 RVWEGMGLIVLHSGHFSKIFKRLM-------GTPCALKWREAGERERVWVVNPGHPIAEGIGESF 146 (261)
T ss_pred HHhcccceEEEeccchhHHHHHHc-------CCccccchhhcCcceeEEEeCCCCchhhcchhhE
Confidence 333334566666555555555544 2211 0111113568999999999999997544
No 17
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=49.85 E-value=9.1 Score=36.77 Aligned_cols=17 Identities=41% Similarity=0.968 Sum_probs=11.6
Q ss_pred ceEEE-cCCChHHHHHHH
Q psy13239 139 KTMEV-NPRHPLIRELYR 155 (182)
Q Consensus 139 ~~LEI-Np~HplI~~L~~ 155 (182)
+-+|+ ||||||.++|+.
T Consensus 468 rL~ELsnpNhPLLkkll~ 485 (700)
T COG1480 468 RLLELSNPNHPLLKKLLT 485 (700)
T ss_pred hHHHhcCCCcHHHHHHHh
Confidence 33443 888888888874
No 18
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=49.10 E-value=29 Score=25.13 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=26.7
Q ss_pred HHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCC
Q psy13239 13 FVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKE 53 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~ 53 (182)
..+.++++|+||.+++.+-=+-.+ +-.|..|..++.+
T Consensus 18 la~~L~~rGh~V~~~~~~~~~~~v----~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 18 LARALRRRGHEVRLATPPDFRERV----EAAGLEFVPIPGD 54 (139)
T ss_dssp HHHHHHHTT-EEEEEETGGGHHHH----HHTT-EEEESSSC
T ss_pred HHHHHhccCCeEEEeecccceecc----cccCceEEEecCC
Confidence 457899999999998887655544 3369999998877
No 19
>PF03562 MltA: MltA specific insert domain; InterPro: IPR005300 This group of proteins includes MltA; a membrane-bound, murein degrading transglycosylase enzyme which plays an important role in the controlled growth of the stress-bearing sacculus of Escherichia coli [, ].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 2PI8_D 2AE0_X 2PIC_A 2GAE_A 2PJJ_A 3CZB_A 2G6G_A 2PNW_A 2G5D_A.
Probab=41.84 E-value=10 Score=29.81 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=17.6
Q ss_pred HHhCCCeEEEecCCchhhhhc
Q psy13239 17 LLRKGYEILYLIEAVDEYTLS 37 (182)
Q Consensus 17 ~k~kg~EVL~l~d~iDe~~i~ 37 (182)
+..+|.|+.++.||+|-|+++
T Consensus 63 l~~~~~eiaw~~dpvd~fflq 83 (158)
T PF03562_consen 63 LDGKGLEIAWLKDPVDAFFLQ 83 (158)
T ss_dssp TTTSSCEEEEES-HHHHHHHH
T ss_pred ccCCCCEEEEeCChHHhHHee
Confidence 456899999999999999984
No 20
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=38.11 E-value=1.7e+02 Score=22.73 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=21.3
Q ss_pred CCCeEEEecCCc-----hhhhhccccccCCcceeeccCCCC
Q psy13239 20 KGYEILYLIEAV-----DEYTLSSLPEFEGKKFQNIAKEGL 55 (182)
Q Consensus 20 kg~EVL~l~d~i-----De~~i~~l~~~~~~~f~sV~~~~~ 55 (182)
.+||+||+-..+ |+-+...|.+.++++..-....+.
T Consensus 38 ~~yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G~ 78 (160)
T PF12641_consen 38 EDYDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAGA 78 (160)
T ss_pred CCCCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecCC
Confidence 467777777665 344555566666666555444443
No 21
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=37.97 E-value=32 Score=30.60 Aligned_cols=45 Identities=20% Similarity=0.463 Sum_probs=35.8
Q ss_pred hcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCc
Q psy13239 9 ESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSI 57 (182)
Q Consensus 9 ~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~ 57 (182)
.++|+.+-|+++|+-|+|..|.+|+-++... ...+.++|+..+..
T Consensus 296 ~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea----~rql~~~dk~~iaF 340 (360)
T PF07429_consen 296 RDNPFWQDLKEQGIPVLFYGDELDEALVREA----QRQLANVDKQQIAF 340 (360)
T ss_pred cCChHHHHHHhCCCeEEeccccCCHHHHHHH----HHHHhhCcccceee
Confidence 4789999999999999999999999998665 34456666665543
No 22
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=37.21 E-value=35 Score=27.42 Aligned_cols=13 Identities=38% Similarity=1.071 Sum_probs=12.4
Q ss_pred EEEcCCChHHHHH
Q psy13239 141 MEVNPRHPLIREL 153 (182)
Q Consensus 141 LEINp~HplI~~L 153 (182)
+.|.|+|||++++
T Consensus 39 ials~~H~lv~~l 51 (185)
T PF13603_consen 39 IALSPEHPLVKKL 51 (185)
T ss_dssp EEEETTSCHHHHC
T ss_pred EEECCCCHHHHhh
Confidence 8999999999998
No 23
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=36.85 E-value=1.8e+02 Score=24.23 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCcchhhhhHHHhHHhHHHHHHHHHhhhhccccceEEEe
Q psy13239 14 VERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTQYEPLLKWLSEKALKDQIAKAEIS 93 (182)
Q Consensus 14 lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~~~~k~~~~~~~~~~~~L~~~~k~~~L~~~v~~V~vs 93 (182)
.+.++++|.+|.|+...--..+.+.+++ .|.....+.... + ..++...+.++++. .
T Consensus 24 A~~l~~~g~~v~f~~~~~~~~~~~~i~~-~g~~v~~~~~~~-----~------~~~d~~~~~~~l~~-~----------- 79 (279)
T TIGR03590 24 ARALHAQGAEVAFACKPLPGDLIDLLLS-AGFPVYELPDES-----S------RYDDALELINLLEE-E----------- 79 (279)
T ss_pred HHHHHHCCCEEEEEeCCCCHHHHHHHHH-cCCeEEEecCCC-----c------hhhhHHHHHHHHHh-c-----------
Confidence 4678889999999998866666666632 344554443321 0 12234446666554 2
Q ss_pred ecCCCCcEEEEecCCCCcHHHHHHHHH
Q psy13239 94 ERLSDSPCALVASMFGWTGNMERLAMS 120 (182)
Q Consensus 94 ~rL~~sPa~iv~~e~~~s~~M~r~m~~ 120 (182)
.|.+|+.+.|+.++.-++.++.
T Consensus 80 -----~~d~vV~D~y~~~~~~~~~~k~ 101 (279)
T TIGR03590 80 -----KFDILIVDHYGLDADWEKLIKE 101 (279)
T ss_pred -----CCCEEEEcCCCCCHHHHHHHHH
Confidence 1446666666666665555543
No 24
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=35.26 E-value=97 Score=22.86 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=31.8
Q ss_pred EEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhcc
Q psy13239 101 CALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVK 158 (182)
Q Consensus 101 a~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~ 158 (182)
+|++.=+...+...-|+.+.. |+-+++.|-|+|+....|.+...
T Consensus 58 A~lv~v~~~~~~aI~~lrkIH--------------PPAHIiVis~~~~~y~eL~~~~~ 101 (107)
T PF04009_consen 58 AALVKVEEDATKAIDRLRKIH--------------PPAHIIVISPRHDVYEELLEMFG 101 (107)
T ss_pred heEEEecCCchhHHHHHhhcC--------------CCceEEEECCCchHHHHHHHHhh
Confidence 455544445667766666543 56799999999999999987653
No 25
>COG4463 CtsR Transcriptional repressor of class III stress genes [Transcription]
Probab=33.74 E-value=45 Score=25.90 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHH
Q psy13239 71 YEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLI 150 (182)
Q Consensus 71 ~~~L~~~~k~~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI 150 (182)
-..|.+.|. +.+..+.= .++.|.+.+-..+|-+.- |++ |+-. =.-.+-|-+|.++
T Consensus 28 RselAd~Fq--cVPSQINY-VIkTRFT~erGY~VESKR-----------------GGG----GYIR-I~Kv~~~~~~~~i 82 (153)
T COG4463 28 RSELADQFQ--CVPSQINY-VIKTRFTEERGYLVESKR-----------------GGG----GYIR-IIKVEYSDNHELI 82 (153)
T ss_pred HHHHhhhcc--cchhheee-eeeeeeecccceEEEeec-----------------CCC----ceEE-EEEecccchHHHH
Confidence 344555553 44554443 466788888777776641 222 1321 1236889999999
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHhccccC
Q psy13239 151 RELYRRVKDDPEDAKATEIATMMFQTGTLRE 181 (182)
Q Consensus 151 ~~L~~~~~~~~~~~~~~~~~~~lyd~All~~ 181 (182)
..|+++....-..+.+.+++..|||.-+|++
T Consensus 83 ~~l~~~I~~~iSq~~~~dII~~Lfde~lite 113 (153)
T COG4463 83 NALLQLIGKSISQQAAEDIIQLLFDEKLITE 113 (153)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhH
Confidence 9999988755556678999999999887753
No 26
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.15 E-value=41 Score=21.59 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCeEEEecCCc
Q psy13239 12 PFVERLLRKGYEILYLIEAV 31 (182)
Q Consensus 12 P~lE~~k~kg~EVL~l~d~i 31 (182)
-+++..+++|++++.++|.-
T Consensus 19 ~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 19 ELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHcCCCEEEEeeCC
Confidence 47899999999999999985
No 27
>PTZ00062 glutaredoxin; Provisional
Probab=31.85 E-value=49 Score=26.98 Aligned_cols=99 Identities=10% Similarity=0.138 Sum_probs=54.2
Q ss_pred CCCeEEEecCC-------chhhhhccc-cccCCcceeeccCCCCCc---------chhhhhHHHhHHhHHHHHHHHHhhh
Q psy13239 20 KGYEILYLIEA-------VDEYTLSSL-PEFEGKKFQNIAKEGLSI---------SANKEKMEALKTQYEPLLKWLSEKA 82 (182)
Q Consensus 20 kg~EVL~l~d~-------iDe~~i~~l-~~~~~~~f~sV~~~~~~~---------~~~k~~~~~~~~~~~~L~~~~k~~~ 82 (182)
+|.=|+++..+ +++ ++..| .+|...+|.+|+.+ .+. .+.+..+...-.....|..+++. .
T Consensus 17 ~g~~vl~f~a~w~~~C~~m~~-vl~~l~~~~~~~~F~~V~~d-~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~~-~ 93 (204)
T PTZ00062 17 TGKLVLYVKSSKEPEYEQLMD-VCNALVEDFPSLEFYVVNLA-DANNEYGVFEFYQNSQLINSLEGCNTSTLVSFIRG-W 93 (204)
T ss_pred CCcEEEEEeCCCCcchHHHHH-HHHHHHHHCCCcEEEEEccc-cCcccceEEEEEECCEEEeeeeCCCHHHHHHHHHH-H
Confidence 69999999666 333 34444 68999999999988 443 12121111111223334444433 2
Q ss_pred hcc-ccc--eEEEeecCCCCcEEEEec------CCCCcHHHHHHHHHh
Q psy13239 83 LKD-QIA--KAEISERLSDSPCALVAS------MFGWTGNMERLAMSN 121 (182)
Q Consensus 83 L~~-~v~--~V~vs~rL~~sPa~iv~~------e~~~s~~M~r~m~~~ 121 (182)
.+. ... .-++.....+.|++|..- ..+++.+..++++..
T Consensus 94 ~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~ 141 (204)
T PTZ00062 94 AQKGSSEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS 141 (204)
T ss_pred cCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc
Confidence 221 000 011212234667777644 578888898988764
No 28
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=31.20 E-value=8.3 Score=21.95 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=12.1
Q ss_pred ceEEEcCCChHHHHHH
Q psy13239 139 KTMEVNPRHPLIRELY 154 (182)
Q Consensus 139 ~~LEINp~HplI~~L~ 154 (182)
+-+|+||+++..-.-+
T Consensus 4 kAie~~P~n~~a~~nl 19 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNL 19 (34)
T ss_pred HHHHHCCCCHHHHHHH
Confidence 5689999999876544
No 29
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.32 E-value=40 Score=30.80 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=53.2
Q ss_pred HHHHHHhCCCeEEEecCCchhhhhcccccc----------CCcceeeccCCCCCc-c----hhhh-------hHHHhHHh
Q psy13239 13 FVERLLRKGYEILYLIEAVDEYTLSSLPEF----------EGKKFQNIAKEGLSI-S----ANKE-------KMEALKTQ 70 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~----------~~~~f~sV~~~~~~~-~----~~k~-------~~~~~~~~ 70 (182)
..|.|+++|..||++.|.+=-|.+-+ +|- +|++- ||-+.--.+ | .++- ..-+.++.
T Consensus 244 IAEyFRDqG~~VLL~mDSlTRfA~Aq-REI~LA~GEpP~~kGYpp-SVF~~LP~LlERaG~~~~GsITafYTVLveGDD~ 321 (441)
T COG1157 244 IAEYFRDQGKRVLLIMDSLTRFAMAQ-REIGLAAGEPPATKGYPP-SVFSELPRLLERAGNGDKGSITAFYTVLVEGDDM 321 (441)
T ss_pred HHHHHHhCCCeEEEEeecHHHHHHHH-HHHHHhcCCCCccCCCCc-hHHHHhHHHHhhcCCCCCCcEEEEEEEEeecCCC
Confidence 46999999999999999888877633 111 12221 111100000 0 0000 00112445
Q ss_pred HHHHHHHHHhhhhccccceEEEeecCC---CCcEEEEecCCCCcHHHHH
Q psy13239 71 YEPLLKWLSEKALKDQIAKAEISERLS---DSPCALVASMFGWTGNMER 116 (182)
Q Consensus 71 ~~~L~~~~k~~~L~~~v~~V~vs~rL~---~sPa~iv~~e~~~s~~M~r 116 (182)
.+++.+..+. +|+. -+.+|.+|. ..|++=+... .|+-|.+
T Consensus 322 ~dPiaD~~Rs-ILDG---HIvLsR~LA~~ghyPaIdvl~S--iSRvm~~ 364 (441)
T COG1157 322 NDPIADEVRS-ILDG---HIVLSRALAEAGHYPAIDVLAS--ISRVMPQ 364 (441)
T ss_pred CCchhhhhhh-hccc---eEEeeHhHHhcCCCCCcchHHH--HHHHhhh
Confidence 6788888988 9976 467888874 4676644432 4444443
No 30
>PRK11162 mltA murein transglycosylase A; Provisional
Probab=29.68 E-value=24 Score=31.36 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.1
Q ss_pred HHHhCCCeEEEecCCchhhhh
Q psy13239 16 RLLRKGYEILYLIEAVDEYTL 36 (182)
Q Consensus 16 ~~k~kg~EVL~l~d~iDe~~i 36 (182)
.+..+|.|+.++.||||-|+|
T Consensus 160 aL~g~gleLaw~~dpvD~Ffl 180 (355)
T PRK11162 160 ALSGKGLELAYSNSLIDNFIM 180 (355)
T ss_pred cccCCCCEEEEeCCHHHhHhe
Confidence 466799999999999999999
No 31
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=27.62 E-value=56 Score=27.64 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=19.1
Q ss_pred cCHHHHHHHhCCCeEEEecCC
Q psy13239 10 SSPFVERLLRKGYEILYLIEA 30 (182)
Q Consensus 10 ~sP~lE~~k~kg~EVL~l~d~ 30 (182)
..|.+..++..|++|+++++-
T Consensus 28 A~pv~~el~d~G~~Vi~~SSK 48 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSK 48 (274)
T ss_pred cchHHHHHHHcCCeEEEeccc
Confidence 479999999999999999875
No 32
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=27.44 E-value=56 Score=24.76 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=17.9
Q ss_pred HHHHHHhCCCeEEEecCCchhhhhcc
Q psy13239 13 FVERLLRKGYEILYLIEAVDEYTLSS 38 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iDe~~i~~ 38 (182)
.|+.+++.|++|||..-|+--.+...
T Consensus 41 ~L~~~k~~g~~~lfVi~PvNg~wydy 66 (130)
T PF04914_consen 41 LLDVCKELGIDVLFVIQPVNGKWYDY 66 (130)
T ss_dssp HHHHHHHTT-EEEEEE----HHHHHH
T ss_pred HHHHHHHcCCceEEEecCCcHHHHHH
Confidence 68899999999999999998777644
No 33
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.66 E-value=56 Score=25.84 Aligned_cols=28 Identities=14% Similarity=0.450 Sum_probs=24.9
Q ss_pred HHHHHHhCCCeEEEecCCchhhhhcccc
Q psy13239 13 FVERLLRKGYEILYLIEAVDEYTLSSLP 40 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iDe~~i~~l~ 40 (182)
+...|+++|++=|+|..--|.|+|+.-.
T Consensus 64 ~~d~f~~kGVD~I~cVSVND~FVm~AWa 91 (165)
T COG0678 64 LADEFKAKGVDEIYCVSVNDAFVMNAWA 91 (165)
T ss_pred HHHHHHHcCCceEEEEEeCcHHHHHHHH
Confidence 4567999999999999999999998774
No 34
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=25.41 E-value=65 Score=26.38 Aligned_cols=24 Identities=17% Similarity=0.474 Sum_probs=20.1
Q ss_pred HHHHHHhCCCeEEEecCCchhhhh
Q psy13239 13 FVERLLRKGYEILYLIEAVDEYTL 36 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iDe~~i 36 (182)
..|.|+.+|.+||++.|-+--|..
T Consensus 96 ~AEyfrd~G~dVlli~Dsltr~a~ 119 (215)
T PF00006_consen 96 IAEYFRDQGKDVLLIIDSLTRWAQ 119 (215)
T ss_dssp HHHHHHHTTSEEEEEEETHHHHHH
T ss_pred hhHHHhhcCCceeehhhhhHHHHH
Confidence 349999999999999998866653
No 35
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=24.10 E-value=60 Score=27.80 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=19.7
Q ss_pred HHHHHHhCCCeEEEecCCchhhh
Q psy13239 13 FVERLLRKGYEILYLIEAVDEYT 35 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iDe~~ 35 (182)
.-|.|+.+|.+||++.|.+--|.
T Consensus 152 iAE~fr~~G~~Vlvl~DslTr~A 174 (274)
T cd01132 152 MGEYFMDNGKHALIIYDDLSKQA 174 (274)
T ss_pred HHHHHHHCCCCEEEEEcChHHHH
Confidence 45889999999999999877774
No 36
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=23.83 E-value=47 Score=27.82 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=34.5
Q ss_pred HHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCC
Q psy13239 13 FVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKE 53 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~ 53 (182)
.++..++.|..|+++..-||+.+...|.++.=.-+.+|.+.
T Consensus 122 ~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~ 162 (261)
T cd03334 122 LVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPS 162 (261)
T ss_pred HHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHH
Confidence 57788889999999999999999999988866666666654
No 37
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=22.73 E-value=82 Score=27.69 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=26.3
Q ss_pred cCHHHHHHHhCCCeEEEecCCchhhhhcc
Q psy13239 10 SSPFVERLLRKGYEILYLIEAVDEYTLSS 38 (182)
Q Consensus 10 ~sP~lE~~k~kg~EVL~l~d~iDe~~i~~ 38 (182)
++|+..-|.+.|+-|||-+|.+|+..+..
T Consensus 258 ~n~fwqdl~e~gv~Vlf~~d~L~~~~v~e 286 (322)
T PRK02797 258 DNPFWQDLTEQGLPVLFTGDDLDEDIVRE 286 (322)
T ss_pred CCchHHHHHhCCCeEEecCCcccHHHHHH
Confidence 68999999999999999999999988854
No 38
>KOG3967|consensus
Probab=22.67 E-value=71 Score=26.99 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=20.8
Q ss_pred HHHhcCHHHHHHHhCCCeEEEecCC
Q psy13239 6 VQVESSPFVERLLRKGYEILYLIEA 30 (182)
Q Consensus 6 ~~~~~sP~lE~~k~kg~EVL~l~d~ 30 (182)
+.-.|-||+++..+-||.||.|.-.
T Consensus 129 d~GTQiPyi~rAv~~Gygviv~N~N 153 (297)
T KOG3967|consen 129 DSGTQIPYIKRAVAEGYGVIVLNPN 153 (297)
T ss_pred ccCCcChHHHHHHHcCCcEEEeCCc
Confidence 4446889999999999999988654
No 39
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.55 E-value=88 Score=21.46 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCeEEEecCCchhhhhccccccCCcceee
Q psy13239 12 PFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQN 49 (182)
Q Consensus 12 P~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~s 49 (182)
...+.+...|.+|+++.. |-+.....|.. .|.+...
T Consensus 54 ~~~~~l~~~~v~~vi~~~-iG~~~~~~l~~-~gI~v~~ 89 (103)
T cd00851 54 KAAEFLADEGVDVVIVGG-IGPRALNKLRN-AGIKVYK 89 (103)
T ss_pred HHHHHHHHcCCCEEEeCC-CCcCHHHHHHH-CCCEEEE
Confidence 445566667777777753 55555555533 3444443
No 40
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=21.47 E-value=81 Score=21.43 Aligned_cols=20 Identities=20% Similarity=0.497 Sum_probs=16.6
Q ss_pred HHHHHHhCCCeEEEecCCch
Q psy13239 13 FVERLLRKGYEILYLIEAVD 32 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iD 32 (182)
..+.|+++|++|++...+.-
T Consensus 4 I~~~L~~~G~~v~~i~~m~~ 23 (69)
T smart00596 4 IEEALKDIGFPVLFIHNMLN 23 (69)
T ss_pred HHHHHHHcCCceeEEEcccc
Confidence 46789999999999887753
No 41
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=21.15 E-value=94 Score=29.61 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=22.8
Q ss_pred HHhcCHHH-----HHHHhCCCeEEEecCCchhhh
Q psy13239 7 QVESSPFV-----ERLLRKGYEILYLIEAVDEYT 35 (182)
Q Consensus 7 ~~~~sP~l-----E~~k~kg~EVL~l~d~iDe~~ 35 (182)
.-..|+|. |.|+++|++||++.|.+=-|.
T Consensus 305 ~R~~s~ytg~tiAEYfRD~G~~Vll~~DS~tR~A 338 (591)
T TIGR01042 305 AREASIYTGITLAEYFRDMGYNVSMMADSTSRWA 338 (591)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHH
Confidence 34456665 999999999999999876654
No 42
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=20.27 E-value=80 Score=28.28 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=18.7
Q ss_pred HHHHHHhCCCeEEEecCCchhhh
Q psy13239 13 FVERLLRKGYEILYLIEAVDEYT 35 (182)
Q Consensus 13 ~lE~~k~kg~EVL~l~d~iDe~~ 35 (182)
.-|.|+++|++||++.|.+=-|.
T Consensus 245 iAEYfrd~G~dVll~~Ds~tR~A 267 (369)
T cd01134 245 IAEYFRDMGYNVALMADSTSRWA 267 (369)
T ss_pred HHHHHHHcCCCEEEEEcChhHHH
Confidence 35899999999999998765544
No 43
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=20.06 E-value=1.2e+02 Score=20.30 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=6.0
Q ss_pred HHHHHhCCCeEEE
Q psy13239 14 VERLLRKGYEILY 26 (182)
Q Consensus 14 lE~~k~kg~EVL~ 26 (182)
.+.++++|++|+.
T Consensus 67 ~~~L~~~gI~v~~ 79 (94)
T PF02579_consen 67 FRALKEAGIKVYQ 79 (94)
T ss_dssp HHHHHHTTSEEEE
T ss_pred HHHHHHCCCEEEE
Confidence 3444444444444
Done!