Query psy13239
Match_columns 182
No_of_seqs 122 out of 1072
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 23:41:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q6m_A Heat shock protein HSP 100.0 1.6E-53 5.3E-58 377.6 13.7 175 4-182 208-385 (448)
2 3hjc_A Heat shock protein 83-1 100.0 6.8E-52 2.3E-56 367.8 15.1 175 4-182 224-401 (444)
3 2cge_A ATP-dependent molecular 100.0 9.8E-50 3.3E-54 351.6 16.2 174 4-182 206-383 (405)
4 2o1u_A Endoplasmin; GRP94, HSP 100.0 9.3E-50 3.2E-54 369.0 15.9 177 4-182 457-638 (666)
5 2cg9_A ATP-dependent molecular 100.0 1.6E-47 5.4E-52 354.4 9.8 174 4-182 478-655 (677)
6 2ioq_A Chaperone protein HTPG; 100.0 1.1E-45 3.8E-50 340.3 11.7 165 4-182 437-605 (624)
7 1sf8_A Chaperone protein HTPG; 100.0 8.6E-35 2.9E-39 219.4 10.3 96 73-182 12-107 (126)
8 1y4s_A Chaperone protein HTPG; 100.0 8.5E-33 2.9E-37 252.0 1.6 117 4-121 437-557 (559)
9 2gq0_A Chaperone protein HTPG; 99.8 2.5E-21 8.6E-26 164.2 3.7 85 4-106 209-295 (303)
10 1hk7_A Heat shock protein HSP8 99.8 9.1E-21 3.1E-25 159.8 2.0 80 4-85 206-288 (288)
11 3pry_A Heat shock protein HSP 99.6 1.1E-16 3.6E-21 133.9 4.6 55 4-58 208-262 (268)
12 3s99_A Basic membrane lipoprot 36.5 29 0.00098 29.1 3.7 45 9-53 74-119 (356)
13 2gm5_A Transposon gamma-delta 29.9 30 0.001 24.7 2.4 22 11-32 76-97 (139)
14 2pnw_A AGR_C_15P, membrane-bou 28.8 15 0.00051 31.7 0.6 21 16-36 166-186 (380)
15 3guv_A Site-specific recombina 28.5 32 0.0011 25.1 2.4 23 11-33 95-117 (167)
16 2g5d_A GNA33; hydrolase, beta 26.1 18 0.0006 31.7 0.6 22 16-37 220-241 (422)
17 3g13_A Putative conjugative tr 26.0 36 0.0012 24.9 2.3 23 11-33 95-117 (169)
18 1gdt_A GD resolvase, protein ( 25.6 41 0.0014 24.9 2.6 22 11-32 77-98 (183)
19 2l82_A Designed protein OR32; 25.4 45 0.0015 24.0 2.5 23 12-34 94-116 (162)
20 2hqb_A Transcriptional activat 24.4 86 0.003 24.7 4.5 43 11-53 53-96 (296)
21 3o6q_B Stage II sporulation pr 23.5 64 0.0022 19.9 2.6 20 102-121 25-44 (56)
22 3pkz_A Recombinase SIN; small 21.6 59 0.002 22.6 2.6 22 11-32 75-96 (124)
No 1
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=1.6e-53 Score=377.63 Aligned_cols=175 Identities=38% Similarity=0.706 Sum_probs=149.2
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCc-c--hhhhhHHHhHHhHHHHHHHHHh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSI-S--ANKEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~-~--~~k~~~~~~~~~~~~L~~~~k~ 80 (182)
+.+++++|||+|.|++||||||||++||||||+++|++|+|++|+||+++++++ + ++++..+..++++++||+|||+
T Consensus 208 s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~ 287 (448)
T 3q6m_A 208 TKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKD 287 (448)
T ss_dssp CHHHHHTSGGGHHHHHHTCCEEEECSTHHHHHTTTCCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CHHHHHhChHHHHHHHCCCEEEEecCchHHHHHHHHHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999987 2 2333344556789999999999
Q ss_pred hhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhccCC
Q psy13239 81 KALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDD 160 (182)
Q Consensus 81 ~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~~~ 160 (182)
+|+++|++|++|+||++||||||++++|||++|||||++|++ ++++.++++..++||||||+||||++|.++.+.+
T Consensus 288 -~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~---~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d 363 (448)
T 3q6m_A 288 -ILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQAL---RDNSTMGYMAAKKHLEINPDHSIIETLRQKAEAD 363 (448)
T ss_dssp -HTGGGCSEEEECSSCSSSSEEEEECSSSCCHHHHHHCCC-----------------CEEEEECTTCHHHHHHHHHHHHC
T ss_pred -HhcCcceEEEecCCCCCCCeEEEeCCcchhHHHHHHHHHhhc---cccccccccccCceeEECCCCHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999865 3333345677899999999999999999987766
Q ss_pred CChHHHHHHHHHHHHhccccCC
Q psy13239 161 PEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 161 ~~~~~~~~~~~~lyd~All~~G 182 (182)
++++.++++|++|||+|+|++|
T Consensus 364 ~~~~~~~~~~~lLyd~AlL~~G 385 (448)
T 3q6m_A 364 KNDKSVKDLVILLYETALLSSG 385 (448)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHhHHhcCC
Confidence 7778899999999999999998
No 2
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=6.8e-52 Score=367.84 Aligned_cols=175 Identities=41% Similarity=0.725 Sum_probs=152.9
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCc-c--hhhhhHHHhHHhHHHHHHHHHh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSI-S--ANKEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~-~--~~k~~~~~~~~~~~~L~~~~k~ 80 (182)
+.+.+++|||+|.|++||||||||++||||||+++|++|+|++|+||+++++++ + ++++..+..++++++||+|+|+
T Consensus 224 s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~ 303 (444)
T 3hjc_A 224 SKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKE 303 (444)
T ss_dssp CHHHHHTCGGGHHHHHHTCCEEEECSHHHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CHHHHHhChHHHHHHhCCcEEEEeCCchHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999887 2 2333345567789999999999
Q ss_pred hhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhccCC
Q psy13239 81 KALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDD 160 (182)
Q Consensus 81 ~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~~~ 160 (182)
+|+++|.+|++|+||++||||||++++|||++|||||++|++. +++..+++..++||||||+||||++|+++.+.+
T Consensus 304 -~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Merimka~~~~---~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d 379 (444)
T 3hjc_A 304 -VLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALR---DSSMAQYMMSKKTMELNPRHPIIKELRRRVGAD 379 (444)
T ss_dssp -HHGGGCSEEEECSSCSSSSEEEEBCSSSBCHHHHHHHHHC-----------CTTBCCCEEEECTTSHHHHHHHHHHHTC
T ss_pred -HhcCcceEEEecCCCCCCCeEEEcCCccccHHHHHHHHHhccc---ccccccccccCeeEEECCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999641 222234667899999999999999999988777
Q ss_pred CChHHHHHHHHHHHHhccccCC
Q psy13239 161 PEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 161 ~~~~~~~~~~~~lyd~All~~G 182 (182)
++++.++++|++|||+|+|++|
T Consensus 380 ~~~~~~~~l~~lLyd~AlL~~G 401 (444)
T 3hjc_A 380 ENDKAVKDLVFLLFDTSLLTSG 401 (444)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhCC
Confidence 7788999999999999999988
No 3
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-50 Score=351.61 Aligned_cols=174 Identities=37% Similarity=0.690 Sum_probs=152.8
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCc-c--hhhhhHHHhHHhHHHHHHHHHh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSI-S--ANKEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~-~--~~k~~~~~~~~~~~~L~~~~k~ 80 (182)
+.+++++|||+|.|++||||||||++||||||+++|.+|+|++|+||+++ +++ + ++++..+..++++++|++|||+
T Consensus 206 s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~ 284 (405)
T 2cge_A 206 SLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKE 284 (405)
T ss_dssp CHHHHHTCTTHHHHHHHTCCEEEECSHHHHHHHHHHCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhcChHHHHHHhCCCEEEEecCchHHHHHHHHHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 887 2 2223334567789999999999
Q ss_pred hhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhccCC
Q psy13239 81 KALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDD 160 (182)
Q Consensus 81 ~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~~~ 160 (182)
+|+++|.+|++|+||++||||||++++|||++|||||++|++ +++++.+++..+++|||||+||||++|+++.+.+
T Consensus 285 -~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~mer~~k~~~~---~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~ 360 (405)
T 2cge_A 285 -ILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQAL---RDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEG 360 (405)
T ss_dssp -HHTTSCSEEEECSSCCSSSEEEEECSSSCCHHHHHHHHHHHT---TSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTT
T ss_pred -HhcCcceEEEEEeccCCCCeEEEeccccccHHHHHHHHHhhc---cccccccccccCeeEEEcCCCHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999965 2222334567899999999999999999876544
Q ss_pred -CChHHHHHHHHHHHHhccccCC
Q psy13239 161 -PEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 161 -~~~~~~~~~~~~lyd~All~~G 182 (182)
.+++.++++|++|||+|+|++|
T Consensus 361 ~~~~~~~~~~~~~Lyd~AlL~~G 383 (405)
T 2cge_A 361 GAQDKTVKDLTKLLYETALLTSG 383 (405)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHHhCC
Confidence 4567899999999999999998
No 4
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=9.3e-50 Score=369.00 Aligned_cols=177 Identities=55% Similarity=1.006 Sum_probs=155.9
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCc-ch--hhhhHHHhHHhHHHHHHHHHh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSI-SA--NKEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~-~~--~k~~~~~~~~~~~~L~~~~k~ 80 (182)
+.+++++|||+|.|++||||||||+|||||||+++|.+|+|++|+||+++++++ ++ +++..+..++++++||+|||+
T Consensus 457 ~~~~~~~sp~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~k~ 536 (666)
T 2o1u_A 457 SRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKD 536 (666)
T ss_dssp SHHHHHTCGGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CHHHHhhCcHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEecccccccccchhhhhhhhhhHHhHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999999999999988 22 233335567789999999999
Q ss_pred hh-hccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCC-ChhhhhccCCCceEEEcCCChHHHHHHHhcc
Q psy13239 81 KA-LKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKAD-DPQRKYYLSQKKTMEVNPRHPLIRELYRRVK 158 (182)
Q Consensus 81 ~~-L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~-~~~~~~~~~~k~~LEINp~HplI~~L~~~~~ 158 (182)
+ |+++|.+|++|+||++||||||++++|||++|||||+||+++ ++ ++++.+++..++||||||+||||++|+++.+
T Consensus 537 -~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~-~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~~~ 614 (666)
T 2o1u_A 537 -KALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQ-TGKDISTNYYASQKKTFEINPRHPLIKDMLRRVK 614 (666)
T ss_dssp -TTTTTTEEEEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHH-TSCCCCSCSSSSCCEEEEECTTSHHHHHHHHHHH
T ss_pred -ccCCCceeEEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhh-cccCcccccccccCeeeEECCCCHHHHHHHHhhh
Confidence 9 999999999999999999999999999999999999999763 11 2223345778999999999999999988766
Q ss_pred CCCChHHHHHHHHHHHHhccccCC
Q psy13239 159 DDPEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 159 ~~~~~~~~~~~~~~lyd~All~~G 182 (182)
.+.+++.++++|++|||+|+|++|
T Consensus 615 ~~~~~~~~~~~~~~l~d~All~~G 638 (666)
T 2o1u_A 615 EDEDDKTVSDLAVVLFETATLRSG 638 (666)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHHHhCC
Confidence 555677899999999999999988
No 5
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-47 Score=354.41 Aligned_cols=174 Identities=37% Similarity=0.690 Sum_probs=146.0
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCc-c--hhhhhHHHhHHhHHHHHHHHHh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSI-S--ANKEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~-~--~~k~~~~~~~~~~~~L~~~~k~ 80 (182)
+.+++++|||+|.|++||||||||++||||||+++|.+|+|++|+||+++ +++ + ++++..+..++++++||+|||+
T Consensus 478 s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~ 556 (677)
T 2cg9_A 478 SLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKE 556 (677)
T ss_dssp CSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCSSTTSSTTHHHHHGGGHHHHHHHHH
T ss_pred CHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-cccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 887 2 2233335567789999999999
Q ss_pred hhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhccCC
Q psy13239 81 KALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDD 160 (182)
Q Consensus 81 ~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~~~ 160 (182)
+|+++|.+|++|.||++||||||++++|||++|||||++|++ +++++++++..+++|||||+||||++|+.+...+
T Consensus 557 -~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~---~d~~~~~~~~~k~~LeiNp~hpli~~L~~~~~~d 632 (677)
T 2cg9_A 557 -ILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQAL---RDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEG 632 (677)
T ss_dssp -TTCSSCSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC----------------CEEEECTTCHHHHHHHHHHHTC
T ss_pred -hcCCcceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhc---cccccccccccCceEEEcCCCHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999854 2233344567899999999999999999876544
Q ss_pred -CChHHHHHHHHHHHHhccccCC
Q psy13239 161 -PEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 161 -~~~~~~~~~~~~lyd~All~~G 182 (182)
.+++.++++|++|||+|+|++|
T Consensus 633 ~~~~~~~~~~~~~Lyd~All~~G 655 (677)
T 2cg9_A 633 GAQDKTVKDLTKLLYETALLTSG 655 (677)
T ss_dssp CSSCSSSSTTHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHHhCC
Confidence 4556789999999999999998
No 6
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=1.1e-45 Score=340.28 Aligned_cols=165 Identities=25% Similarity=0.434 Sum_probs=128.5
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCcc---hh-hhhHHHhHHhHHHHHHHHH
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS---AN-KEKMEALKTQYEPLLKWLS 79 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~~---~~-k~~~~~~~~~~~~L~~~~k 79 (182)
+.+++++|||+|.|++||||||||++||||||+++|.+|+|++|+||+++++++. ++ ++..+..++++++||+|||
T Consensus 437 ~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 516 (624)
T 2ioq_A 437 SYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVK 516 (624)
T ss_dssp SHHHHHHCHHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSCSTTTTTCC-------HHHHHHHHHHHHHHH
T ss_pred CHHHHhhChHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecccccccccchhhhhhhhHhHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999872 22 2222455778999999999
Q ss_pred hhhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHHHHHhccC
Q psy13239 80 EKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKD 159 (182)
Q Consensus 80 ~~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~L~~~~~~ 159 (182)
+ +|+++|.+|++|+||+++|||||++++|||++|||||++| +++ ++..+++|||||+||||++|.+
T Consensus 517 ~-~L~~~v~~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~----~~~-----~~~~~~~LeiN~~hpli~~L~~---- 582 (624)
T 2ioq_A 517 A-LLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAA----GQK-----VPEVKYIFELNPDHVLVKRAAD---- 582 (624)
T ss_dssp H-HSSSSSSEEEECCCCSSCCEEEECCC------------------------------CCEEEECTTCHHHHTTTS----
T ss_pred H-hhcCCceEEEEeecCCCCcEEEEecCcCcCHHHHHHHHHh----hhc-----ccccCceEEECCCCHHHHHHHh----
Confidence 9 9999999999999999999999999999999999999988 322 3457899999999999999964
Q ss_pred CCChHHHHHHHHHHHHhccccCC
Q psy13239 160 DPEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 160 ~~~~~~~~~~~~~lyd~All~~G 182 (182)
..+++.++++|++|||+|+|++|
T Consensus 583 ~~~~~~~~~~~~~L~d~All~~g 605 (624)
T 2ioq_A 583 TEDEAKFSEWVELLLDQALLAER 605 (624)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCC
Confidence 23567799999999999999987
No 7
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=100.00 E-value=8.6e-35 Score=219.38 Aligned_cols=96 Identities=19% Similarity=0.350 Sum_probs=86.9
Q ss_pred HHHHHHHhhhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHhhhhcCCChhhhhccCCCceEEEcCCChHHHH
Q psy13239 73 PLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRE 152 (182)
Q Consensus 73 ~L~~~~k~~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~~~~~~~~~~~~~~~~~k~~LEINp~HplI~~ 152 (182)
.+++|||+ +|+++|++|++|+||++||||||++++|||++|||||++| |++ ++..++||||||+||||++
T Consensus 12 ~~~~~~K~-~L~dkV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~----~~~-----~~~~k~~LEINp~HplIk~ 81 (126)
T 1sf8_A 12 SFIDRVKA-LLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAA----GQK-----VPEVKYIFELNPDHVLVKR 81 (126)
T ss_dssp CHHHHHHH-HHGGGSSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTT----TSC-----CCCCCCEEEECTTSHHHHH
T ss_pred HHHHHHHH-HhcCcccEEEEeecccCCCEEEEecCcccCHHHHHHHHHh----ccc-----cccCCeeeeECCCCHHHHH
Confidence 48999999 9999999999999999999999999999999999999998 333 3457899999999999999
Q ss_pred HHHhccCCCChHHHHHHHHHHHHhccccCC
Q psy13239 153 LYRRVKDDPEDAKATEIATMMFQTGTLREG 182 (182)
Q Consensus 153 L~~~~~~~~~~~~~~~~~~~lyd~All~~G 182 (182)
|.+. .+++.++++|++|||+|+|++|
T Consensus 82 L~~~----~~~~~~k~l~~lLyd~AlL~~G 107 (126)
T 1sf8_A 82 AADT----EDEAKFSEWVELLLDQALLAER 107 (126)
T ss_dssp HHHC----CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh----cChHHHHHHHHHHHHHHHHHCC
Confidence 9763 3567799999999999999987
No 8
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.97 E-value=8.5e-33 Score=251.99 Aligned_cols=117 Identities=26% Similarity=0.464 Sum_probs=45.7
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCc-c--hh-hhhHHHhHHhHHHHHHHHH
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSI-S--AN-KEKMEALKTQYEPLLKWLS 79 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~-~--~~-k~~~~~~~~~~~~L~~~~k 79 (182)
+.+++++|||+|.|++||||||||++||||||+++|.+|+|++|+||+++++++ + ++ ++..+..++++++||+|||
T Consensus 437 ~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 516 (559)
T 1y4s_A 437 SYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVK 516 (559)
T ss_dssp SSHHHHTCSSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC---------------------------------
T ss_pred CHHHHhhChHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccccccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999987 2 21 2223445778999999999
Q ss_pred hhhhccccceEEEeecCCCCcEEEEecCCCCcHHHHHHHHHh
Q psy13239 80 EKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSN 121 (182)
Q Consensus 80 ~~~L~~~v~~V~vs~rL~~sPa~iv~~e~~~s~~M~r~m~~~ 121 (182)
+ +|+++|.+|++|+||++||||||++++|||++|+|||++|
T Consensus 517 ~-~L~~~v~~V~~s~rl~~sp~~~v~~~~~~~~~m~~~~~~~ 557 (559)
T 1y4s_A 517 A-LLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAA 557 (559)
T ss_dssp ------------------------------------------
T ss_pred H-HhcCCceEEEEeccCCCCCEEEEeCCCCcCHHHHHHHHhc
Confidence 9 9999999999999999999999999999999999999987
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=99.82 E-value=2.5e-21 Score=164.25 Aligned_cols=85 Identities=33% Similarity=0.446 Sum_probs=47.7
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCcchhhhhHHHhHHhHHHHHHHHHhhhh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTQYEPLLKWLSEKAL 83 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~~~~k~~~~~~~~~~~~L~~~~k~~~L 83 (182)
+.+++++|||+|.|++||||||||++||||||+++|++|+|++|+||+++++++++.. ++ .|
T Consensus 209 s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~~-----------------~~-~l 270 (303)
T 2gq0_A 209 SYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLA-----------------DG-DL 270 (303)
T ss_dssp SHHHHHTCGGGHHHHHHTCCEEEECSTTHHHHTTTCCEETTEEEEETTC-------------------------------
T ss_pred CHHHHhcChHHHHHHHCCCeEEEeCchhHHHHHHHHHhcCCcceEEeeccccCccccc-----------------hh-hh
Confidence 5678999999999999999999999999999999999999999999999998763211 24 67
Q ss_pred ccccc--eEEEeecCCCCcEEEEec
Q psy13239 84 KDQIA--KAEISERLSDSPCALVAS 106 (182)
Q Consensus 84 ~~~v~--~V~vs~rL~~sPa~iv~~ 106 (182)
+++|. +|.+|+||++||||+++.
T Consensus 271 ~~~~~~~~~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 271 GTLVPRGSMAISDPNSSSVDKLAAA 295 (303)
T ss_dssp -------------------------
T ss_pred ccccccCCccccCcCCcchHHHHHH
Confidence 88887 899999999999998764
No 10
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=99.79 E-value=9.1e-21 Score=159.81 Aligned_cols=80 Identities=40% Similarity=0.678 Sum_probs=48.7
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCcc---hhhhhHHHhHHhHHHHHHHHHh
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS---ANKEKMEALKTQYEPLLKWLSE 80 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~~---~~k~~~~~~~~~~~~L~~~~k~ 80 (182)
+.+.+++|||+|.|++||||||||+|||||||+++|++|+|++|+||+++ ++++ ++++..+..++++++||+|||+
T Consensus 206 s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~i~~L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~ 284 (288)
T 1hk7_A 206 SLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKE 284 (288)
T ss_dssp SHHHHHTCGGGHHHHTTTCCCEEECSHHHHHHHHHHCEETTEEEEETTTC------------------------------
T ss_pred CHHHHhcCHHHHHHHHCCCEEEEecCchHHHHHhhhhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999998 7772 2223334456789999999999
Q ss_pred hhhcc
Q psy13239 81 KALKD 85 (182)
Q Consensus 81 ~~L~~ 85 (182)
+|++
T Consensus 285 -~L~~ 288 (288)
T 1hk7_A 285 -ILGD 288 (288)
T ss_dssp -----
T ss_pred -HhCC
Confidence 9875
No 11
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=99.63 E-value=1.1e-16 Score=133.92 Aligned_cols=55 Identities=42% Similarity=0.829 Sum_probs=52.8
Q ss_pred chHHHhcCHHHHHHHhCCCeEEEecCCchhhhhccccccCCcceeeccCCCCCcc
Q psy13239 4 LPVQVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS 58 (182)
Q Consensus 4 ~~~~~~~sP~lE~~k~kg~EVL~l~d~iDe~~i~~l~~~~~~~f~sV~~~~~~~~ 58 (182)
+.+++++|||+|.|++||||||||+|||||||+++|++|+|++|+||++++++++
T Consensus 208 s~~~~~~sp~~E~~k~kg~EVL~l~d~iDe~~i~~L~ef~gk~l~sv~k~~l~l~ 262 (268)
T 3pry_A 208 SKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELA 262 (268)
T ss_dssp CHHHHHTCHHHHHHHTTTCCEEECCSTTHHHHHHHHCEETTEEEEETTCSSCCCC
T ss_pred CHHHHHhChHHHHHHHcCceEEEeCCchHHHHHHHHHhcCCceeeecccccCCCc
Confidence 6789999999999999999999999999999999999999999999999998873
No 12
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=36.46 E-value=29 Score=29.13 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=35.3
Q ss_pred hcCHHHHHHHhCCCeEEEecCCc-hhhhhccccccCCcceeeccCC
Q psy13239 9 ESSPFVERLLRKGYEILYLIEAV-DEYTLSSLPEFEGKKFQNIAKE 53 (182)
Q Consensus 9 ~~sP~lE~~k~kg~EVL~l~d~i-De~~i~~l~~~~~~~f~sV~~~ 53 (182)
..-++++.+.++|+++|+++..- .+.+..-..+|.+.+|+-++..
T Consensus 74 d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~id~~ 119 (356)
T 3s99_A 74 DAERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATGY 119 (356)
T ss_dssp HHHHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEESCC
T ss_pred HHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 34579999999999999998753 4455555579999999998864
No 13
>2gm5_A Transposon gamma-delta resolvase; site specific recombination, recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A
Probab=29.89 E-value=30 Score=24.74 Aligned_cols=22 Identities=9% Similarity=0.335 Sum_probs=18.9
Q ss_pred CHHHHHHHhCCCeEEEecCCch
Q psy13239 11 SPFVERLLRKGYEILYLIEAVD 32 (182)
Q Consensus 11 sP~lE~~k~kg~EVL~l~d~iD 32 (182)
..+++.+.++|+.|+++++++|
T Consensus 76 ~~~~~~l~~~gv~l~~~~~~~d 97 (139)
T 2gm5_A 76 IQLIKEFDAQGVSIRFIDDGIS 97 (139)
T ss_dssp HHHHHHHHHTTCEEEETTTTEE
T ss_pred HHHHHHHHhCCCEEEEecCCcc
Confidence 3567889999999999999887
No 14
>2pnw_A AGR_C_15P, membrane-bound lytic murein transglycosylase; structural genomics, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: b.52.1.4
Probab=28.78 E-value=15 Score=31.74 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.2
Q ss_pred HHHhCCCeEEEecCCchhhhh
Q psy13239 16 RLLRKGYEILYLIEAVDEYTL 36 (182)
Q Consensus 16 ~~k~kg~EVL~l~d~iDe~~i 36 (182)
.+..+|.|+.++.||+|.|++
T Consensus 166 al~g~~leiaw~~dpvd~ffl 186 (380)
T 2pnw_A 166 CLRGRGLEIAWARSKVDLFFV 186 (380)
T ss_dssp TTTTSSCEEEEESCHHHHHHH
T ss_pred cccCCCcEEEEECCHHHHHHh
Confidence 467899999999999999997
No 15
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=28.51 E-value=32 Score=25.11 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=19.0
Q ss_pred CHHHHHHHhCCCeEEEecCCchh
Q psy13239 11 SPFVERLLRKGYEILYLIEAVDE 33 (182)
Q Consensus 11 sP~lE~~k~kg~EVL~l~d~iDe 33 (182)
..+++.+.++|+.|+++++++|.
T Consensus 95 ~~~~~~l~~~gv~l~~~~~~~d~ 117 (167)
T 3guv_A 95 LSTLQIMQDYGVNLICVEDGIDS 117 (167)
T ss_dssp HHHHHHHHHTTCEEEETTTTEEG
T ss_pred HHHHHHHHHCCCEEEEeeCCcCC
Confidence 45778899999999999998764
No 16
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa 1090} SCOP: b.52.1.4 PDB: 2g6g_A
Probab=26.14 E-value=18 Score=31.72 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=19.2
Q ss_pred HHHhCCCeEEEecCCchhhhhc
Q psy13239 16 RLLRKGYEILYLIEAVDEYTLS 37 (182)
Q Consensus 16 ~~k~kg~EVL~l~d~iDe~~i~ 37 (182)
.+..+|.|+.++.||+|-|+|+
T Consensus 220 al~g~glelaw~~dpvd~Fflq 241 (422)
T 2g5d_A 220 ALDGKAPILGYAEDPVELFFMH 241 (422)
T ss_dssp TTTTSSCEEEEESCHHHHHHHH
T ss_pred cccCCCcEEEEeCCHHHHHHhh
Confidence 4567999999999999999963
No 17
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=25.97 E-value=36 Score=24.86 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=17.3
Q ss_pred CHHHHHHHhCCCeEEEecCCchh
Q psy13239 11 SPFVERLLRKGYEILYLIEAVDE 33 (182)
Q Consensus 11 sP~lE~~k~kg~EVL~l~d~iDe 33 (182)
..+++.+.++|+.|+++++++|.
T Consensus 95 ~~~~~~l~~~gv~l~~~~~~~d~ 117 (169)
T 3g13_A 95 LKYVRMLKERNIAVYFEDEKINT 117 (169)
T ss_dssp HHHHHHHHTTTCEEEETTTTEET
T ss_pred HHHHHHHHHcCCEEEEecCCcCC
Confidence 34677788888888888887653
No 18
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=25.63 E-value=41 Score=24.92 Aligned_cols=22 Identities=9% Similarity=0.335 Sum_probs=18.8
Q ss_pred CHHHHHHHhCCCeEEEecCCch
Q psy13239 11 SPFVERLLRKGYEILYLIEAVD 32 (182)
Q Consensus 11 sP~lE~~k~kg~EVL~l~d~iD 32 (182)
.-+++.|..+|+.|+++++++|
T Consensus 77 ~~~~~~l~~~gv~l~~~~~~~d 98 (183)
T 1gdt_A 77 IQLIKEFDAQGVSIRFIDDGIS 98 (183)
T ss_dssp HHHHHHHHHTTCEEEEGGGCCB
T ss_pred HHHHHHHHHCCCEEEEecCCcc
Confidence 3478889999999999999876
No 19
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=25.38 E-value=45 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCeEEEecCCchhh
Q psy13239 12 PFVERLLRKGYEILYLIEAVDEY 34 (182)
Q Consensus 12 P~lE~~k~kg~EVL~l~d~iDe~ 34 (182)
-|+|..|.+|.||...|..-|.-
T Consensus 94 dfieeakergvevfvvynnkddd 116 (162)
T 2l82_A 94 DFIEEAKERGVEVFVVYNNKDDD 116 (162)
T ss_dssp HHHHHHHHTTCEEEEEEECSCHH
T ss_pred HHHHHHHhcCcEEEEEecCCCch
Confidence 48899999999999988766543
No 20
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=24.40 E-value=86 Score=24.72 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=32.1
Q ss_pred CHHHHHHHhCCCeEEEecCCc-hhhhhccccccCCcceeeccCC
Q psy13239 11 SPFVERLLRKGYEILYLIEAV-DEYTLSSLPEFEGKKFQNIAKE 53 (182)
Q Consensus 11 sP~lE~~k~kg~EVL~l~d~i-De~~i~~l~~~~~~~f~sV~~~ 53 (182)
..+++.+..+|++.|++...- ++.+.....+|.+.+|+.++..
T Consensus 53 ~~~l~~l~~~~vdgIi~~~~~~~~~~~~~~~~~p~~p~v~id~~ 96 (296)
T 2hqb_A 53 HRRIKELVDGGVNLIFGHGHAFAEYFSTIHNQYPDVHFVSFNGE 96 (296)
T ss_dssp HHHHHHHHHTTCCEEEECSTHHHHHHHTTTTSCTTSEEEEESCC
T ss_pred HHHHHHHHHCCCCEEEEcCHhHHHHHHHHHHHCCCCEEEEEecC
Confidence 368999999999999998653 3334443456778999999864
No 21
>3o6q_B Stage II sporulation protein SB; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=23.55 E-value=64 Score=19.94 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=16.5
Q ss_pred EEEecCCCCcHHHHHHHHHh
Q psy13239 102 ALVASMFGWTGNMERLAMSN 121 (182)
Q Consensus 102 ~iv~~e~~~s~~M~r~m~~~ 121 (182)
.+..+.|+.|++-+||++-.
T Consensus 25 ~~s~~~y~vSPhT~rIfK~N 44 (56)
T 3o6q_B 25 TTSVASYQVSPHTARIFKEN 44 (56)
T ss_dssp SEEECCCCCCHHHHHHHHHH
T ss_pred cccccccccChhHHHHHHHh
Confidence 45567799999999999865
No 22
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=21.57 E-value=59 Score=22.56 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=17.9
Q ss_pred CHHHHHHHhCCCeEEEecCCch
Q psy13239 11 SPFVERLLRKGYEILYLIEAVD 32 (182)
Q Consensus 11 sP~lE~~k~kg~EVL~l~d~iD 32 (182)
.-+++.++++|+.|+++++|+|
T Consensus 75 ~~~~~~l~~~gv~l~~~~~~~~ 96 (124)
T 3pkz_A 75 IHTVNYLKDKEVQLMITSLPMM 96 (124)
T ss_dssp HHHHHHHHHTTCEEEETTCGGG
T ss_pred HHHHHHHHHCCCEEEEecCCcc
Confidence 3467788999999999988874
Done!