RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13239
(182 letters)
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 185 bits (472), Expect = 1e-56
Identities = 83/179 (46%), Positives = 119/179 (66%), Gaps = 7/179 (3%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISAN---KEK 63
QVE SPF+ERL +KGYE+LY+ + +DEY + L EFEGKK N+ KEGL + + K+K
Sbjct: 298 QVEKSPFLERLKKKGYEVLYMTDPIDEYAMQQLKEFEGKKLVNVTKEGLKLEESEEEKKK 357
Query: 64 MEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAH 123
E LK ++E L KW+ + L D++ K +S RL DSPCALV S +GW+ NMER+ + A
Sbjct: 358 REELKKEFEELCKWM-KDILGDKVEKVVVSNRLVDSPCALVTSQYGWSANMERIMKAQAL 416
Query: 124 QKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
+ D Y+S KKT+E+NPRHP+I+EL +RV+ D D ++A ++++T L G
Sbjct: 417 R---DSSMSAYMSSKKTLEINPRHPIIKELRKRVEADKNDKTVKDLARLLYETALLTSG 472
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 134 bits (337), Expect = 9e-37
Identities = 74/179 (41%), Positives = 108/179 (60%), Gaps = 7/179 (3%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISAN---KEK 63
++E+SPF+E+ R+G E+L++ E +DEY + + +FE KKF + KEG+ + K++
Sbjct: 473 KLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQ 532
Query: 64 MEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAH 123
E K E L K + E L D++ K +SERLS SPC LV S FGW+ +ME++ M N
Sbjct: 533 REEEKAACEKLCKTMKE-VLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQI-MRN-- 588
Query: 124 QKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
Q D Y+ KKTME+NPRHP+I+EL RRV D D ++ ++F T L G
Sbjct: 589 QALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSG 647
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 125 bits (318), Expect = 4e-34
Identities = 57/180 (31%), Positives = 103/180 (57%), Gaps = 18/180 (10%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS----ANKE 62
++SP +E +KG E+L L + +DE+ +S L EF+GK F+++A+ L + KE
Sbjct: 426 AAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKE 485
Query: 63 KMEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNA 122
+ E + +++PLL+ L ++AL D++ +S RL+DSP LVA + ME+L + A
Sbjct: 486 EKEEAEEEFKPLLERL-KEALGDKVKDVRLSHRLTDSPACLVADEGDMSTQMEKL-LKAA 543
Query: 123 HQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
Q+ + K +E+NP HPL+ +++ D+ ++AK ++A +++ L EG
Sbjct: 544 GQEVPES--------KPILEINPNHPLV----KKLADEADEAKFKDLAELLYDQALLAEG 591
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 117 bits (295), Expect = 5e-31
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEA 66
+ SP +E KG E+L L + +DE+ L+ LPEFEGK F++I K L + +E+ EA
Sbjct: 436 AAKGSPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEA 495
Query: 67 ----LKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNA 122
K +++PLL+ + ++ L D++ +S RL+DSP L + MERL +
Sbjct: 496 DSEEEKKEFKPLLERV-KEILGDKVKDVRLSHRLTDSPACLTTDGADLSTQMERL-LKAQ 553
Query: 123 HQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
Q+ P+ K L E+NP HPL+++L ++A ++ +++ L EG
Sbjct: 554 GQE--VPESKKIL------EINPNHPLVKKL----ASLEDEASVADLVELLYDQALLAEG 601
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 102 bits (254), Expect = 2e-25
Identities = 57/174 (32%), Positives = 107/174 (61%), Gaps = 8/174 (4%)
Query: 12 PFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISAN---KEKMEALK 68
P ++ +K ++++L E+VDE + + E++GKKF++I K ++ K+K E +K
Sbjct: 567 PQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFELTEDEKKKEEKVK 626
Query: 69 TQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADD 128
Y+ L+ +S+ L++QI K EIS RL D+PCA+V++ +G +G ME+L N ++
Sbjct: 627 KMYKALIDVISD-TLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKIN----VNN 681
Query: 129 PQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
+ +S +K +E+NP HP++ +L +R +P+D++ TE +++Q+ L G
Sbjct: 682 SDQIKAMSGQKILEINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASG 735
>gnl|CDD|216564 pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are
necessary for efficient DNA transposition. This family
includes an amino-terminal region of the pilin gene
inverting protein (PIVML) and members of the
IS111A/IS1328/IS1533 family of transposases.
Length = 142
Score = 30.7 bits (70), Expect = 0.22
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 142 EVNPRH-PLIRELYRRVKDDPEDAKATEIATMMFQTGTLRE 181
VNPR R+ RR K D DA+A IA + + G LR
Sbjct: 74 VVNPRQVKAFRKSLRRAKTDAIDAEA--IARLA-RRGRLRP 111
>gnl|CDD|150245 pfam09506, Salt_tol_Pase, Glucosylglycerol-phosphate phosphatase
(Salt_tol_Pase). Proteins in this family are
glucosylglycerol-phosphate phosphatases, with the gene
symbol stpA (Salt Tolerance Protein A). A motif
characteristic of acid phosphatases is found, but
otherwise this family shows little sequence similarity
to other phosphatases. This enzyme acts on the
glucosylglycerol phosphate, product of glucosylglycerol
phosphate synthase and immediate precursor of the
osmoprotectant glucosylglycerol.
Length = 381
Score = 31.5 bits (72), Expect = 0.23
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 47 FQNIAKEGLS------ISANKEKMEA-LKTQYEPLLKWLSEKALKDQIAKAEISERLSDS 99
F NI+ G+S ++A +MEA LK + +L LSE+ + A + R+ S
Sbjct: 89 FGNISHPGVSDAEIAFLAAVPARMEALLKERLPSILPELSEEEIAKLAQAAILDTRV--S 146
Query: 100 PCALVASMF 108
P + S+F
Sbjct: 147 PTINLNSLF 155
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 29.1 bits (65), Expect = 0.99
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 43 EGKKFQNIAKEGLSISANKEKMEALKTQYEPLLKWLSEKALKDQIAKAEISERLSD 98
+ + + KEGL I E ++ +K ++ P+ K L E+ LK ++ K E E + D
Sbjct: 107 VEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGEPLEEVID 162
>gnl|CDD|234096 TIGR03031, cas_csx12, CRISPR-associated protein Cas9/Csx12, subtype
II-B/NMENI. Members of this family of CRISPR-associated
(cas) protein are found, so far, in CRISPR/cas loci in
Wolinella succinogenes DSM 1740, Legionella pneumophila
str. Paris, and Francisella tularensis, where the last
probably is an example of a degenerate CRISPR locus,
having neither repeats nor a functional Cas1. The
characteristic repeat length is 37 base pairs and period
is about 72. One region of this large protein shows
sequence similarity to pfam01844, HNH endonuclease
[Mobile and extrachromosomal element functions, Other].
Length = 802
Score = 28.4 bits (63), Expect = 2.8
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 19 RKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEG-LSISANKEKMEALKTQYEPLLKW 77
RK ++ L+ + + + + + F N K G + + +++E + K
Sbjct: 499 RKQKQLPNLVAGILQVSSEDFINNKDEWFWNAHKVGRTKLKSYCKEIEEARKNSGNTFKI 558
Query: 78 LSEKALKDQIAKAEISER 95
E+AL +E+
Sbjct: 559 DIEEALSKDPEHLTSNEK 576
>gnl|CDD|162974 TIGR02683, upstrm_HI1419, putative addiction module killer
protein. Members of this strictly bacterial protein
family are small, at roughly 100 amino acids. The gene
is almost invariably the upstream member of a gene
pair, where the downstream member is a predicted
DNA-binding protein from a clade within Pfam
helix-turn-helix family pfam01381. These gene pairs,
when found on the bacterial chromosome, often are
located with prophage regions, but also in both
integrated plasmid regions and near housekeeping genes.
Analysis suggests that the gene pair may serve as an
addiction module.
Length = 95
Score = 26.4 bits (59), Expect = 3.6
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 76 KWLSEKALKDQIAKAEISERL 96
KWL LKD AKA I R+
Sbjct: 11 KWL--DGLKDPRAKARILARI 29
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 26.7 bits (60), Expect = 7.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 150 IRELYRRVKDDPEDAKATEIATMMFQTGT 178
+ EL ++ K P K ++AT+M+ +GT
Sbjct: 94 LEELGKKNKVPPTPPKPEDLATIMYTSGT 122
>gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and
related proteins, extended (e) SDRs. UGD catalyzes the
formation of UDP-xylose from UDP-glucuronate; it is an
extended-SDR, and has the characteristic glycine-rich
NAD-binding pattern, TGXXGXXG, and active site tetrad.
Extended SDRs are distinct from classical SDRs. In
addition to the Rossmann fold (alpha/beta folding
pattern with a central beta-sheet) core region typical
of all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids.
Extended SDRs are a diverse collection of proteins, and
include isomerases, epimerases, oxidoreductases, and
lyases; they typically have a TGXXGXXG cofactor binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving
as a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton
relay involving the conserved Tyr and Lys, a water
molecule stabilized by Asn, and nicotinamide. Atypical
SDRs generally lack the catalytic residues
characteristic of the SDRs, and their glycine-rich
NAD(P)-binding motif is often different from the forms
normally seen in classical or extended SDRs. Complex
(multidomain) SDRs such as ketoreductase domains of
fatty acid synthase have a GGXGXXG NAD(P)-binding motif
and an altered active site motif (YXXXN). Fungal type
ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding
motif.
Length = 305
Score = 26.4 bits (59), Expect = 8.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 12/42 (28%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAK 52
S +RLL G+E++ VD + F G+K +NI
Sbjct: 14 SHLCDRLLEDGHEVI----CVDNF-------FTGRK-RNIEH 43
>gnl|CDD|226183 COG3657, COG3657, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 100
Score = 25.4 bits (56), Expect = 9.4
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Query: 76 KWLSEKALKDQIAKAEISERL 96
+WL K LKD+ AKA+I+ RL
Sbjct: 14 EWL--KKLKDRRAKAKIAARL 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.361
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,271,053
Number of extensions: 838953
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 30
Length of query: 182
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 91
Effective length of database: 6,901,388
Effective search space: 628026308
Effective search space used: 628026308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.6 bits)