RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13239
(182 letters)
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 199 bits (509), Expect = 6e-63
Identities = 67/179 (37%), Positives = 105/179 (58%), Gaps = 7/179 (3%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS---ANKEK 63
QV +S FVERL + G E++Y+IE +DEY + L EFEGK ++ KEGL + K+K
Sbjct: 211 QVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKK 270
Query: 64 MEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAH 123
E KT++E L K + + L+ ++ K +S RL SPC +V S +GWT NMER+ + A
Sbjct: 271 QEEKKTKFENLCKIMKD-ILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQAL 329
Query: 124 QKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
+ D Y++ KK +E+NP H +I L ++ + D D ++ ++++T L G
Sbjct: 330 R---DNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 385
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 198 bits (505), Expect = 2e-62
Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 7/179 (3%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS---ANKEK 63
++E+SPF+E+ R+G E+L++ E +DEY + + +FE KKF + KEG+ K++
Sbjct: 227 KLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQ 286
Query: 64 MEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAH 123
E K E L K + E L D++ K +SERLS SPC LV S FGW+ +ME++ + A
Sbjct: 287 REEEKAACEKLCKTMKE-VLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQAL 345
Query: 124 QKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
+ + Q Y+ KKTME+NPRHP+I+EL RRV D D ++ ++F T L G
Sbjct: 346 RDSSMAQ---YMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSG 401
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 187 bits (476), Expect = 2e-58
Identities = 65/179 (36%), Positives = 101/179 (56%), Gaps = 7/179 (3%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEG--LSISANKEKM 64
VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+ K +
Sbjct: 209 AVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKDFELEETDEEKAER 268
Query: 65 EALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQ 124
E +YEPL K L E L DQ+ K +S +L D+P A+ FGW+ NMER+ + A +
Sbjct: 269 EKEIKEYEPLTKALKE-ILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALR 327
Query: 125 KADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV-KDDPEDAKATEIATMMFQTGTLREG 182
D Y+S KKT E++P+ P+I+EL +RV + +D ++ ++++T L G
Sbjct: 328 ---DSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSG 383
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 192 bits (490), Expect = 2e-58
Identities = 65/179 (36%), Positives = 101/179 (56%), Gaps = 7/179 (3%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS--ANKEKM 64
VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+ K +
Sbjct: 481 AVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKDFELEETDEEKAER 540
Query: 65 EALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQ 124
E +YEPL K L E L DQ+ K +S +L D+P A+ FGW+ NMER+ + A +
Sbjct: 541 EKEIKEYEPLTKALKE-ILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALR 599
Query: 125 KADDPQRKYYLSQKKTMEVNPRHPLIRELYRRV-KDDPEDAKATEIATMMFQTGTLREG 182
D Y+S KKT E++P+ P+I+EL +RV + +D ++ ++++T L G
Sbjct: 600 ---DSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSG 655
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 191 bits (488), Expect = 3e-58
Identities = 100/179 (55%), Positives = 138/179 (77%), Gaps = 3/179 (1%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS---ANKEK 63
+ ESSPFVERLL+KGYE++YL E VDEY + +LPEF+GK+FQN+AKEG+ KE
Sbjct: 460 EAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKES 519
Query: 64 MEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAH 123
EA++ ++EPLL W+ +KALKD+I KA +S+RL++SPCALVAS +GW+GNMER+ + A+
Sbjct: 520 REAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAY 579
Query: 124 QKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
Q D YY SQKKT E+NPRHPLI+++ RRVK+D +D +++A ++F+T TLR G
Sbjct: 580 QTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSG 638
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 165 bits (419), Expect = 2e-48
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS----ANKE 62
+SSP +E L +KG E+L L + +DE+ ++ L EF+GK FQ+++K S+ E
Sbjct: 440 AAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDE 499
Query: 63 KMEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNA 122
+ + P + + L +++ ++ RL+D+P + + M +L + A
Sbjct: 500 SAKEAEKALTPFIDRVKA-LLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKL-FAAA 557
Query: 123 HQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
QK + K E+NP H L++ D ++AK +E ++ L E
Sbjct: 558 GQKVPEV--------KYIFELNPDHVLVKRA----ADTEDEAKFSEWVELLLDQALLAER 605
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 126 bits (318), Expect = 2e-34
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISA----NKE 62
+SSP +E L +KG E+L L + +DE+ ++ L EF+GK FQ+++K S+ E
Sbjct: 440 AAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDE 499
Query: 63 KMEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNA 122
+ + P + + L +++ ++ RL+D+P + + M +L + A
Sbjct: 500 SAKEAEKALTPFIDRVKA-LLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKL-FAAA 557
Query: 123 HQ 124
Q
Sbjct: 558 GQ 559
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface,
exposed amphipathic helix, three stranded beta sheet;
2.60A {Escherichia coli} SCOP: d.271.1.1
Length = 126
Score = 94.6 bits (236), Expect = 9e-26
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 14/120 (11%)
Query: 63 KMEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNA 122
+ + + + L +++ ++ RL+D+P + + M +L + A
Sbjct: 2 RGSHHHHHHGSFIDRVKA-LLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKL-FAAA 59
Query: 123 HQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
QK + K E+NP H L++ D ++AK +E ++ L E
Sbjct: 60 GQKVPEV--------KYIFELNPDHVLVKRA----ADTEDEAKFSEWVELLLDQALLAER 107
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 94.6 bits (236), Expect = 5e-24
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEG--LSISANKEKM 64
VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+ K +
Sbjct: 209 AVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKDFELEETDEEKAER 268
Query: 65 EALKTQYEPLLKWLSEKALKD 85
E +YEPL K L E L D
Sbjct: 269 EKEIKEYEPLTKALKE-ILGD 288
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 86.5 bits (215), Expect = 6e-21
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS--ANKEKM 64
+SSP +E L +KG E+L L + +DE+ ++ L EF+GK FQ+++K S+ A+ +
Sbjct: 212 AAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADGDLG 271
Query: 65 EALKTQYEPLLKWLSEKALKDQIAKAEISERL 96
+ + ++ A E
Sbjct: 272 TLVPRGSMAISDPN-SSSVDKLAAALEHHHHH 302
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural
genomics consortium, SGC, HE protein, chaperone; 2.28A
{Homo sapiens}
Length = 268
Score = 82.2 bits (204), Expect = 1e-19
Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSIS 58
QV +S FVER+ ++G+E++Y+ E +DEY + L EF+GK ++ KEGL ++
Sbjct: 211 QVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELA 262
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator,
HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8
PDB: 1usv_A
Length = 260
Score = 78.4 bits (194), Expect = 4e-18
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKE 53
VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+
Sbjct: 211 SVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD 257
>1y6z_A Heat shock protein, putative; chaperone, structural genomics,
structural genom consortium, SGC, unknown function;
1.88A {Plasmodium falciparum}
Length = 263
Score = 73.4 bits (181), Expect = 3e-16
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLP--EFEGKKFQNIAKE 53
++SP +E+L Y++L+ +E +DE+ LSSL +++G + ++ K
Sbjct: 214 TAQNSPSLEKLKALNYDVLFSLEPIDEFCLSSLTVNKYKGYEVLDVNKA 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 7e-04
Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 51/203 (25%)
Query: 13 FVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKF-----------QNIAKEGLSISANK 61
FVE +LR Y+ +L+ + P + + Q AK +S
Sbjct: 82 FVEEVLRINYK--FLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSR---L 134
Query: 62 EKMEALKT-----QYEPLL---------K-WLSEKALKDQIAKAE-------ISERLSDS 99
+ L+ + + K W++ + + ++ + +S
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 100 PCALVASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRR--- 156
P ++ + + N ++D + +++ R L + Y
Sbjct: 195 PETVLEML----QKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 157 VKDDPEDAKATEIATMMFQTGTL 179
V + ++AKA L
Sbjct: 249 VLLNVQNAKA--WNAFNLSCKIL 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.071
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 26/88 (29%)
Query: 1 MKVLPVQVESS-------PFVERLLRKGYEIL-----------YLI----EAVDEYTLSS 38
+ + P +V +S VER+ ++ ++ Y+ A+D T+++
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD--TVTN 1867
Query: 39 LPEFEGKKFQNIAKEGLSISANKEKMEA 66
+ F K Q I L S + E++E
Sbjct: 1868 VLNF--IKLQKIDIIELQKSLSLEEVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.16
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 84 KDQIAKAEISERL--SDS-PC-ALVASM 107
K + K + S +L DS P A+ A+M
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 27.8 bits (62), Expect = 2.4
Identities = 6/34 (17%), Positives = 8/34 (23%), Gaps = 5/34 (14%)
Query: 104 VASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQ 137
+ SM ME + KY
Sbjct: 385 IHSMS-----MEFFTWPWMKLFFKEDAEKYQFYH 413
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 27.4 bits (61), Expect = 3.3
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 104 VASMFGWTGNMERLAMSNAHQKADDPQRKYYLSQ 137
+ SM ME ++ KYY S
Sbjct: 388 IHSMS-----MEFFTWPWMKLFFEEDADKYYFSH 416
>4ets_A Ferric uptake regulation protein; metal binding protein,
transcription factor; 2.10A {Campylobacter jejuni subsp}
Length = 162
Score = 26.6 bits (59), Expect = 3.6
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 129 PQRKYYLSQKKTMEVNPRHPLIRELYRRVKDDPEDAK---AT 167
QR+ L KT+ + H LY +K D AT
Sbjct: 33 KQREVLL---KTLYHSDTHYTPESLYMEIKQAEPDLNVGIAT 71
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding
protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Length = 145
Score = 26.4 bits (59), Expect = 3.9
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 129 PQRKYYLSQKKTMEVNPRHPLIRELYRRVKD-DPEDAKAT 167
PQR L + + + HP ++Y+ ++ P + AT
Sbjct: 22 PQRHAIL---EYLVNSMAHPTADDIYKALEGKFPNMSVAT 58
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 26.8 bits (60), Expect = 5.5
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 114 MERLAMSNAHQKADDPQRKYYLSQKKTME 142
+ + DP+R YYLS +E
Sbjct: 81 VIDWNKTQQKFTTRDPKRVYYLS----LE 105
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR
{Rattus norvegicus} SCOP: j.12.1.1
Length = 53
Score = 24.4 bits (53), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 128 DPQRKYYLSQKKTMEVNPRHPLIR 151
+ Q+KYY + KK P+ P+ R
Sbjct: 19 EEQKKYYNAMKKLGSKKPQKPIPR 42
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, U function; 2.20A {Vibrio cholerae}
SCOP: d.58.18.9 d.58.18.9
Length = 133
Score = 25.7 bits (56), Expect = 6.5
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 52 KEGLSISANKEKMEALKTQYEPLLKWLS---EKALKDQIAKAEISERLSDS--PCALVAS 106
EGL++ EK + + L ++ +L+ A + +L++ ++A
Sbjct: 48 PEGLTLVLEAEKAQQAGLESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAG 107
Query: 107 MF 108
+
Sbjct: 108 YY 109
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 26.3 bits (59), Expect = 8.1
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 114 MERLAMSNAHQKADDPQRKYYLSQKKTME 142
+ R + H DP+R YYLS +E
Sbjct: 53 VGRWIRTQQHYYEKDPKRIYYLS----LE 77
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein,
periplasmic-binding protein, maltose, SUG binding
protein; 2.20A {Xanthomonas axonopodis PV}
Length = 458
Score = 25.9 bits (57), Expect = 8.2
Identities = 17/148 (11%), Positives = 43/148 (29%), Gaps = 37/148 (25%)
Query: 29 EAVDEYTLSSLPEFEGKKFQNIAKEGLSISAN-KEKMEALKTQYEPLLKWLSEKALKDQI 87
+ + LP G L I + + K + K L+++LS+ ++ +
Sbjct: 279 GMEGNWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKDASWK-----LIEYLSQPQVQARF 333
Query: 88 AKAEISERLSDSPCALVASMFGWTGNM-ERLAMSNAHQKADDPQRKYYLSQKKTMEVNPR 146
G++ R + A+D + Q + ++ P+
Sbjct: 334 HAI--------------------IGDLPPRRSTWKLPSLANDALAHAFGDQLERVKATPK 373
Query: 147 HPLIRELYRRVKD----------DPEDA 164
+ + ++ + A
Sbjct: 374 VLEWERIVQEMRLVTERVVRGGQSHDAA 401
>2q0t_A Putative gamma-carboxymuconolactone decarboxylase; AHPD-like fold,
structural genomics, joint center for struct genomics,
JCSG; 1.70A {Burkholderia xenovorans} SCOP: a.152.1.1
Length = 263
Score = 25.8 bits (56), Expect = 8.8
Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 22/188 (11%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISA--NKEK- 63
Q P RL + + + + P F + A + +K +
Sbjct: 4 QTTPQPDPSRLRDELVRLHGKASPEWDSLVRLDPRF-VDAYLKFAGVPQRRNHLDDKTRA 62
Query: 64 ------MEALKTQYEPLLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERL 117
Y P + E+AL + E+ E L + S G + +
Sbjct: 63 FIALAADACATQLYAPGVARHIERALSFGATREELIEVL------ELVSTIGIHTSNVGV 116
Query: 118 AMSN----AHQKADDPQRKYYLSQKKTMEVNPRHPLIRELYRRVKD-DPEDAKAT-EIAT 171
+ QK E + + + DP+ +A E ++
Sbjct: 117 PVLLEVLEEEGLRKGAPPLDERRQKLKAEFETNRGYWHPTWEGLLELDPDLFEAYVEFSS 176
Query: 172 MMFQTGTL 179
+ ++TG L
Sbjct: 177 VPWRTGVL 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.361
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,760,303
Number of extensions: 155544
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 36
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.6 bits)