RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13239
(182 letters)
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 69.5 bits (170), Expect = 2e-16
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 14/109 (12%)
Query: 74 LLKWLSEKALKDQIAKAEISERLSDSPCALVASMFGWTGNMERLAMSNAHQKADDPQRKY 133
+ + L +++ ++ RL+D+P + + M +L + + +
Sbjct: 2 FIDRVKA-LLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPE------ 54
Query: 134 YLSQKKTMEVNPRHPLIRELYRRVKDDPEDAKATEIATMMFQTGTLREG 182
K E+NP H L++ D ++AK +E ++ L E
Sbjct: 55 ---VKYIFELNPDHVLVKRA----ADTEDEAKFSEWVELLLDQALLAER 96
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 65.4 bits (159), Expect = 8e-14
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 7 QVESSPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKE 53
VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+
Sbjct: 210 SVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD 256
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 27.7 bits (60), Expect = 0.87
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTQ 70
S V L+ GY+ + + + T S+ E +I + + +++ +E + +
Sbjct: 15 SHTVVELIENGYDC-VVADNLSNSTYDSVARLEVLTKHHIPFYEVDLC-DRKGLEKVFKE 72
Query: 71 YEP 73
Y+
Sbjct: 73 YKI 75
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 26.9 bits (58), Expect = 1.5
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAK 52
S E LL KGYE+ ++ + + +I
Sbjct: 15 SYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEG 56
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 26.6 bits (58), Expect = 2.3
Identities = 8/77 (10%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 16 RLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTQYEPLL 75
+ E ++I + + + + +K + + +++ P +
Sbjct: 425 QHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQM-SRWTPYM 483
Query: 76 KWLSEKALKDQIAKAEI 92
K + E A++D++
Sbjct: 484 KDIMEAAVEDKLDTRHY 500
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 26.1 bits (56), Expect = 2.6
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTQ 70
S +LL+ G+++ +++ + S LP E ++ I N+ M +
Sbjct: 14 SHTCVQLLQNGHDV-IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR-NEALMTEILHD 71
Query: 71 YEP 73
+
Sbjct: 72 HAI 74
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 25.0 bits (54), Expect = 6.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 114 MERLAMSNAHQKADDPQRKYYLS 136
+ R + H DP+R YYLS
Sbjct: 53 VGRWIRTQQHYYEKDPKRIYYLS 75
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 25.0 bits (54), Expect = 7.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 114 MERLAMSNAHQKADDPQRKYYLS 136
+ + DP+R YYLS
Sbjct: 78 VIDWNKTQQKFTTRDPKRVYYLS 100
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 24.6 bits (52), Expect = 8.1
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKK 46
+ + LL KGY + L+ T L E +
Sbjct: 14 AYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEG 49
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 24.6 bits (52), Expect = 8.3
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKK 46
S E LL KGYE+ LI + +
Sbjct: 15 SYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDP 50
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 24.7 bits (52), Expect = 8.3
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTQ 70
S L +G +++ + +L + NK + L T+
Sbjct: 14 SNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR---NKNDVTRLITK 70
Query: 71 YEP 73
Y P
Sbjct: 71 YMP 73
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia
coli [TaxId: 562]}
Length = 357
Score = 24.4 bits (52), Expect = 9.8
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 11 SPFVERLLRKGYEILYLIEAVDEYTLSSLPEFEGKKFQNIAK 52
S E LL KGYE+ + + + K
Sbjct: 15 SYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPK 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.361
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,049
Number of extensions: 28545
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 18
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.4 bits)