BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1324
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 5 HGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFRTIA----DRY---FLVDSLKVFLDHL 56
HGFPESWY W++Q+ + Y +A+D+K + A + Y L + FLD L
Sbjct: 265 HGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKL 324
Query: 57 GRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVP 93
G ++ + IG D+GG LVW YPE V +N P
Sbjct: 325 GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTP 361
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFRTIA----DRY---FLVDSLKVF 52
+ HGFPESWY W++Q+ + Y +A+D+K + A + Y L + F
Sbjct: 42 VCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTF 101
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVP 93
LD LG ++ + IG D+GG LVW YPE V +N P
Sbjct: 102 LDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTP 142
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFRTIA----DRY---FLVDSLKVF 52
+ HGFPESWY W++Q+ + Y +A+D+K + A + Y L + F
Sbjct: 57 VCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTF 116
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVP 93
LD LG ++ + IG D+GG LVW YPE V +N P
Sbjct: 117 LDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTP 157
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTV-AVDIK----TNFRTIADRY---FLVDSLKVF 52
+ HGFPESW+ W++Q+ + + V A+D+K ++ + Y L + F
Sbjct: 259 LCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTF 318
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVP 93
LD LG + + IG D+ G +VW+ YPE V +N P
Sbjct: 319 LDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTP 359
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFRTIADRYF-------LVDSLKVF 52
++ LHGFPESWY W+HQ+ + Y VA+D + R+ R LV +
Sbjct: 36 VVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGV 95
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVP 93
LD G + ++G D+G + W+F +P+ + I+VP
Sbjct: 96 LDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVP 136
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFRTIADRYF-------LVDSLKVF 52
++ LHGFPESWY W+HQ+ + Y VA+D + R+ R LV +
Sbjct: 30 VVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGV 89
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVP 93
LD G + ++G D+G + W+F +P+ + I+VP
Sbjct: 90 LDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVP 130
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRYFL---VDSLK 50
+L LHG+P W+ W + + Y + D+ K + ++ +Y L D
Sbjct: 32 LLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLS-KYSLDKAADDQA 90
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHP 95
LD LG + ++G DF ++ F+ KY + V+K+ I + P
Sbjct: 91 ALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQP 135
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFRTIADR---------YFLVDSLK 50
+LF+HGFPE WY W+HQM + Y VA D++ T LV +
Sbjct: 34 ILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVV 93
Query: 51 VFLDHLGRN--RCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
L+ + N + ++ D+G + W P+ V + ++V
Sbjct: 94 ALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSV 137
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIK----TNFRTIADR-----YFLVDSLK 50
+LF+HGFPE WY W+HQM + Y VA D++ T + D LV +
Sbjct: 34 ILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVV 93
Query: 51 VFLDHLGRN--RCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
L+ + N + ++ D+G + W P+ V + ++V
Sbjct: 94 ALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSV 137
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI----KTNFRTIADRYF-LVDSLKVFLDH 55
+LFLHG P S +IW++ + S +A D+ ++ IA R+F V L F++
Sbjct: 32 VLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDHVRYLDAFIEQ 91
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
G L+ +D+G +L + + P+ V
Sbjct: 92 RGVTSAYLVAQDWGTALAFHLAARRPDFV 120
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI----KTNFRTIADRYF-LVDSLKVFLDH 55
+LFLHG P S +IW++ + S +A D+ ++ IA R+F V L F++
Sbjct: 32 VLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDHVRYLDAFIEQ 91
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
G L+ +D+G +L + + P+ V
Sbjct: 92 RGVTSAYLVAQDWGTALAFHLAARRPDFV 120
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI----KTNFRTIADRYF-LVDSLKVFLDH 55
+LFLHG P S +IW++ + S +A D+ ++ IA R+F V L F++
Sbjct: 32 VLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDHVRYLDAFIEQ 91
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
G L+ +D+G +L + + P+ V
Sbjct: 92 RGVTSAYLVAQDWGTALAFHLAARRPDFV 120
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 3 FLHGFPESWYIWKHQMSEF-SHEYWTVAVDIKTNFRTIA-----DRYFLVDSLKVFLDHL 56
F HG+P S W Q+ F +H Y VA D + + R+ D D + + HL
Sbjct: 27 FHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQVWDGHDMDHYADDVAAVVAHL 86
Query: 57 GRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKMSQLIKT 111
G + +G GG V ++ ++PE V ++ P + Q L K+
Sbjct: 87 GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKS 141
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 94
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
LG +L+ D+G +L + + + PE V
Sbjct: 95 LGLEEVVLVIHDWGSALGFHWAKRNPERV 123
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 94
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
LG +L+ D+G +L + + + PE V
Sbjct: 95 LGLEEVVLVIHDWGSALGFHWAKRNPERV 123
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 32 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 91
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
LG +L+ D+G +L + + + PE V
Sbjct: 92 LGLEEVVLVIHDWGSALGFHWAKRNPERV 120
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 94
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
LG +L+ D+G +L + + + PE V
Sbjct: 95 LGLEEVVLVIHDWGSALGFHWAKRNPERV 123
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 94
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
LG +L+ D+G +L + + + PE V
Sbjct: 95 LGLEEVVLVIHDWGSALGFHWAKRNPERV 123
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 94
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
LG +L+ D+G +L + + + PE V
Sbjct: 95 LGLEEVVLVIHDWGSALGFHWAKRNPERV 123
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 94
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
LG +L+ D+G +L + + + PE V
Sbjct: 95 LGLEEVVLVIHDWGSALGFHWAKRNPERV 123
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 94
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
LG +L+ D+G +L + + + PE V
Sbjct: 95 LGLEEVVLVIHDWGSALGFHWAKRNPERV 123
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 32 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 91
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
LG +L+ D+G +L + + + PE V
Sbjct: 92 LGLEEVVLVIHDWGSALGFHWAKRNPERV 120
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 94
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
LG +L+ D+G +L + + + PE V
Sbjct: 95 LGLEEVVLVIHDWGSALGFHWAKRNPERV 123
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFR-----TIADRYFLVDSLKVFLD 54
+LF HG+P +W++QM S Y T+A D + R T D D + ++
Sbjct: 22 VLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIE 81
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQE 101
HL L+G GG V ++ ++ V +++ +F Q+
Sbjct: 82 HLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPIFGQK 128
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD--RYFLVDS---LKVFLDH 55
+LFLHG P S Y+W++ + + + +A D+ ++ YF D L F++
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA 94
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELV 84
+G +L+ D+G +L + + + PE V
Sbjct: 95 VGLEEVVLVIHDWGSALGFHWAKRNPERV 123
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFR-----TIADRYFLVDSLKVFLD 54
+LF HG+P +W++QM S Y T+A D + R T D D + ++
Sbjct: 22 VLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIE 81
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIII 90
HL L+G GG V ++ ++ V +++
Sbjct: 82 HLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVL 117
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKT----------------NFRTIADRYF 44
+L LHGFP++ ++W ++EY V D++ +FR +A
Sbjct: 28 LLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMA---- 83
Query: 45 LVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKK 104
+ + LG R L+G D GG +P+ V+ ++++ V +E+ +
Sbjct: 84 --SDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDR 141
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVD-----IKTNFRTIADRYFLVDSLKVFLDHL 56
LF HG + +++ S + T+AVD + T + D + + L
Sbjct: 72 LFFHGITSNSAVFEPLXIRLSDRFTTIAVDQRGHGLSDKPETGYEANDYADDIAGLIRTL 131
Query: 57 GRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
R IL+G G + KYP+LV + I+
Sbjct: 132 ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAID 166
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 1 MLFLHGFPESWYIWKHQMSEF-SHEYWTVAVDIKTNFR-----TIADRYFLVDSLKVFLD 54
++F HG+P S W +QM F SH Y +A D + + R T D + +
Sbjct: 24 VVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTGHDMDTYAADVAALTE 83
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKY-PELVVKSIIINVPHPAVFKQELK 103
L + IG GG V ++ + P V K+++++ P + K +
Sbjct: 84 ALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTN 133
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADRYFLVDSLKVFL------- 53
+L LHG+P++ W + +Y V D++ + A D K L
Sbjct: 34 LLLLHGYPQTHLAWHRIAPRLAEDYSVVLADLRGYGESRALDEEGADYSKAALARDQLET 93
Query: 54 -DHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
LG R +IG D G + + +P+ V + + V
Sbjct: 94 MGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVSLTV 133
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKT----------------NFRTIADRYF 44
+L LHGFP++ ++W ++EY V D++ +FR +A
Sbjct: 28 LLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMA---- 83
Query: 45 LVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKK 104
+ + LG R L+G GG +P+ V+ ++++ V +E+ +
Sbjct: 84 --SDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDR 141
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFRTIA-----DRYFLVDSLKVFLD 54
++F HG+P + W+ QM + + Y +A D + + R+ D D L ++
Sbjct: 22 IVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSGNDMDTYADDLAQLIE 81
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPEL-VVKSIIINVPHPAVFKQE 101
HL +L G GG V ++ ++ V K+ +I+ P + K E
Sbjct: 82 HLDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTE 129
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFR-----TIADRYFLVDSLKVFLD 54
+LF HG+ +W++QM S Y T+A D + R T D D + ++
Sbjct: 22 VLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIE 81
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQE 101
HL L+G GG V ++ ++ V +++ +F Q+
Sbjct: 82 HLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQK 128
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFR-----TIADRYFLVDSLKVFLD 54
+LF HG+ +W++QM S Y T+A D + R T D D + ++
Sbjct: 22 VLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIE 81
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIII 90
HL L+G GG V ++ ++ V +++
Sbjct: 82 HLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVL 117
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFR-----TIADRYFLVDSLKVFLD 54
+LF HG+ +W++QM S Y T+A D + R T D D + ++
Sbjct: 22 VLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIE 81
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIII 90
HL L+G GG V ++ ++ V +++
Sbjct: 82 HLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVL 117
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVD-IKTNFRTIAD-----RYFLVDSLKVFLD 54
++ LHG S W ++++S +Y T AVD I ++I + R + L D
Sbjct: 70 LVLLHGALFSSTXWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFD 129
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
+LG + IG GG +FL + PE V + I++
Sbjct: 130 NLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILS 166
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 34 TNFRTIADRYFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVP 93
T+ + +AD L+ LK + I IG +GG L F KYP +VV ++ + P
Sbjct: 101 TSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAP 160
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYW-TVAVDI-------KTNFRTIADRYFLVDSLKVFL 53
L LHG P ++++ + F+ VA D+ K + F SL FL
Sbjct: 50 LCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVYTFGFHRRSLLAFL 109
Query: 54 DHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
D L R L+ +D+GG L + P+LV + I++N
Sbjct: 110 DALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNT 148
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 1 MLFLHGFPESWYIWKHQM-SEFSHEYWTVAVDIKTNFRTI----ADRYF----LVDSLKV 51
+L +HG S I+ Q+ E ++ +A D+ + ++ DR + D++
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTE 86
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKK 104
+ LG ++ G GG + + +YPE+ + ++I P V ++E+ +
Sbjct: 87 VMQQLGIADAVVFGWSLGGHIGIEMIARYPEM--RGLMI-TGTPPVAREEVGQ 136
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 1 MLFLHGFPESWYIWKHQM-SEFSHEYWTVAVDIKTNFRTI----ADRYF----LVDSLKV 51
+L +HG S I+ Q+ E ++ +A D+ + ++ DR + D++
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTE 86
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKK 104
+ LG ++ G GG + + +YPE+ + ++I P V ++E+ +
Sbjct: 87 VMQQLGIADAVVFGWSLGGHIGIEMIARYPEM--RGLMI-TGTPPVAREEVGQ 136
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 1 MLFLHGFPESWYIWKHQM-SEFSHEYWTVAVDIKTNFRTI----ADRYF----LVDSLKV 51
+L +HG S I+ Q+ E ++ +A D+ + ++ DR + D++
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTE 86
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKK 104
+ LG ++ G GG + + +YPE+ + ++I P V ++E+ +
Sbjct: 87 VMQQLGIADAVVFGWGLGGHIGIEMIARYPEM--RGLMI-TGTPPVAREEVGQ 136
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADRY-FLVDSLKVFLDHLGRN 59
++ +HGF ++WY W M E + + +A D+ ++ + + + + V+L L R
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQ 92
Query: 60 RCI-----LIGRDFGGSLVWSFLDKYPELVVKS 87
L+ D G +W + YP +VVK+
Sbjct: 93 FSPDRPFDLVAHDIG---IW---NTYP-MVVKN 118
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADRY-FLVDSLKVFLDHLGRN 59
++ +HGF ++WY W M E + + +A D+ ++ + + + + V+L L R
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQ 92
Query: 60 RCI-----LIGRDFGGSLVWSFLDKYPELVVKS 87
L+ D G +W + YP +VVK+
Sbjct: 93 FSPDRPFDLVAHDIG---IW---NTYP-MVVKN 118
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADRY-FLVDSLKVFLDHLGRN 59
++ +HGF ++WY W M E + + +A D+ ++ + + + + V+L L R
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQ 92
Query: 60 RCI-----LIGRDFGGSLVWSFLDKYPELVVKS 87
L+ D G +W + YP +VVK+
Sbjct: 93 FSPDRPFDLVAHDIG---IW---NTYP-MVVKN 118
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 18/124 (14%)
Query: 1 MLFLHGF---PESWYIWKHQMSEFSHEYWTVAVDIK----TNFRTIADRY--FLVDSLKV 51
++ LHG SW + ++ + + +AVD ++ R ++ + +LK
Sbjct: 59 VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAMALKG 118
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN---------VPHPAVFKQEL 102
D LG R L+G GG F YP + +++ P P + L
Sbjct: 119 LFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRL 178
Query: 103 KKMS 106
K S
Sbjct: 179 SKFS 182
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIK-----------TNFRTIADRYFLVDSL 49
+L LHG+P++ +W ++ + VA D++ + + R D +
Sbjct: 28 LLLLHGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVMAQDQV 87
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
+V + LG + ++G D G + +P V K ++++
Sbjct: 88 EV-MSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDI 129
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 48 SLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
++K +D L +R L+G GG+ +F +YP+ + K I++
Sbjct: 93 AVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 48 SLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
++K +D L +R L+G GG+ +F +YP+ + K I++
Sbjct: 93 AVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 1 MLFLHGFPESWYIWKHQMS-EFSHEYWTVAVD-IKTNFRTIAD-RYFLVDSLKV---FLD 54
+LFLHG P S Y+W++ + + Y VA D I D Y L D + F+D
Sbjct: 32 VLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEYRLQDHVAYXDGFID 91
Query: 55 HLGRNRCILIGRDFG 69
LG + +L+ D+G
Sbjct: 92 ALGLDDXVLVIHDWG 106
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 18/124 (14%)
Query: 1 MLFLHGF---PESWYIWKHQMSEFSHEYWTVAVDIK----TNFRTIADRY--FLVDSLKV 51
++ LHG SW + ++ + + +AVD ++ R ++ + +LK
Sbjct: 39 VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAMALKG 98
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN---------VPHPAVFKQEL 102
D LG R L+G GG F YP + +++ P P + L
Sbjct: 99 LFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRL 158
Query: 103 KKMS 106
K S
Sbjct: 159 SKFS 162
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 48 SLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
++K +D L +R L+G GG+ +F +YP+ + K I++
Sbjct: 93 AVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 48 SLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
++K +D L +R L+G GG+ +F +YP+ + K I++
Sbjct: 93 AVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 48 SLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
++K +D L +R L+G GG+ +F +YP+ + K I++
Sbjct: 93 AVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 48 SLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
++K +D L +R L+G GG+ +F +YP+ + K I++
Sbjct: 90 AVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 133
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 45 LVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
L + L+ LG R +IG GG L + YP V + +++N
Sbjct: 100 LAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVN 146
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKT---------NFR--TIADRYFLVDSL 49
++ HGF W + F +Y V D+ +FR T D Y VD L
Sbjct: 23 LVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLDPY--VDDL 80
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
LD LG + C +G + + PEL K I+I
Sbjct: 81 LHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGA 123
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKT---------NFR--TIADRYFLVDSL 49
++ HGF W + F +Y V D+ +FR T D Y VD L
Sbjct: 23 LVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLDPY--VDDL 80
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
LD LG + C +G + + PEL K I+I
Sbjct: 81 LHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGA 123
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 1 MLFLHGFPESWYIWKH-QMSEFSHEYWTVAVDIKTNFRTIADRYFLVDSLKVFLDHLGR- 58
+L +HG E W+ + + Y VA D+ + R+ S FL + R
Sbjct: 29 VLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQIDRV 88
Query: 59 ------NRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKMSQL 108
+L+G G L + P+ + + I++ +P PA ++ ++QL
Sbjct: 89 IQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQL 144
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 20/132 (15%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI------------KTNFRTIADRYFLVDS 48
+LF HG P S Y+W++ M + +A D+ A+ +D+
Sbjct: 31 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDA 90
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELV-----VKSIIINVPHPAVFKQELK 103
L LD LG +R +L+ D+G +L + + ++ E V +++I + + A F ++ +
Sbjct: 91 LWEALD-LG-DRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEW-ADFPEQDR 147
Query: 104 KMSQLIKTRSGK 115
+ Q ++++G+
Sbjct: 148 DLFQAFRSQAGE 159
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 20/132 (15%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI------------KTNFRTIADRYFLVDS 48
+LF HG P S Y+W++ M + +A D+ A+ +D+
Sbjct: 32 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDA 91
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELV-----VKSIIINVPHPAVFKQELK 103
L LD LG +R +L+ D+G +L + + ++ E V +++I + + A F ++ +
Sbjct: 92 LWEALD-LG-DRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEW-ADFPEQDR 148
Query: 104 KMSQLIKTRSGK 115
+ Q ++++G+
Sbjct: 149 DLFQAFRSQAGE 160
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 20/132 (15%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI------------KTNFRTIADRYFLVDS 48
+LF HG P S Y+W++ M + +A D+ A+ +D+
Sbjct: 32 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDA 91
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELV-----VKSIIINVPHPAVFKQELK 103
L LD LG +R +L+ D+G +L + + ++ E V +++I + + A F ++ +
Sbjct: 92 LWEALD-LG-DRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEW-ADFPEQDR 148
Query: 104 KMSQLIKTRSGK 115
+ Q ++++G+
Sbjct: 149 DLFQAFRSQAGE 160
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 20/132 (15%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI------------KTNFRTIADRYFLVDS 48
+LF HG P S Y+W++ M + +A D+ A+ +D+
Sbjct: 32 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDA 91
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELV-----VKSIIINVPHPAVFKQELK 103
L LD LG +R +L+ D+G +L + + ++ E V +++I + + A F ++ +
Sbjct: 92 LWEALD-LG-DRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEW-ADFPEQDR 148
Query: 104 KMSQLIKTRSGK 115
+ Q ++++G+
Sbjct: 149 DLFQAFRSQAGE 160
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 22/128 (17%)
Query: 5 HGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADRYFLVD----------SLKVFLD 54
HGF +WKH + +Y V D T D YF D L L+
Sbjct: 42 HGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD-YFDFDRYSNLEGYSFDLIAILE 100
Query: 55 HLGRNRCILIGRDFGGSL-VWSFLDKYPELVVKSIII--------NVPHPAVFKQE-LKK 104
L CI +G + V + L++ P+L K ++I +V + F+QE L +
Sbjct: 101 DLKIESCIFVGHSVSAMIGVLASLNR-PDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQ 159
Query: 105 MSQLIKTR 112
+ + I++
Sbjct: 160 LFEAIRSN 167
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI----------KTNFRTIADRYFLVDSLK 50
+L LHGFP++ +W + + + + D+ T + + L
Sbjct: 36 LLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLI 95
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
++ LG L G D G + + P + K ++++
Sbjct: 96 EAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI----------KTNFRTIADRYFLVDSLK 50
+L LHGFP++ +W + + + + D+ T + + L
Sbjct: 36 LLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLI 95
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
++ LG L G D G + + P + K ++++
Sbjct: 96 EAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 22/128 (17%)
Query: 5 HGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADRYFLVD----------SLKVFLD 54
HGF +WKH + +Y V D T D YF D L L+
Sbjct: 26 HGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD-YFDFDRYSNLEGYSFDLIAILE 84
Query: 55 HLGRNRCILIGRDFGGSL-VWSFLDKYPELVVKSIII--------NVPHPAVFKQE-LKK 104
L CI +G + V + L++ P+L K ++I +V + F+QE L +
Sbjct: 85 DLKIESCIFVGHSVSAMIGVLASLNR-PDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQ 143
Query: 105 MSQLIKTR 112
+ + I++
Sbjct: 144 LFEAIRSN 151
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 22/128 (17%)
Query: 5 HGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADRYFLVD----------SLKVFLD 54
HGF +WKH + +Y V D T D YF D L L+
Sbjct: 24 HGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD-YFDFDRYSNLEGYSFDLIAILE 82
Query: 55 HLGRNRCILIGRDFGGSL-VWSFLDKYPELVVKSIII--------NVPHPAVFKQE-LKK 104
L CI +G + V + L++ P+L K ++I +V + F+QE L +
Sbjct: 83 DLKIESCIFVGHSVSAMIGVLASLNR-PDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQ 141
Query: 105 MSQLIKTR 112
+ + I++
Sbjct: 142 LFEAIRSN 149
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIII 90
++ NR + G GG W+ + ++PEL +I I
Sbjct: 259 NIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPI 294
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 5 HGFPESWYIWKHQMSEFSHEYWTVAVDIKT---------NFRTIADRYFLVDSLKVFLDH 55
HGF W + + ++ V D+ +FR + VD L LD
Sbjct: 24 HGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAILDA 83
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
L RC +G + + P+L K ++I
Sbjct: 84 LRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGA 120
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 5 HGFPESWYIWKHQMSEFSHEYWTVAVDIKT---------NFRTIADRYFLVDSLKVFLDH 55
HGF W + + ++ V D+ +FR + VD L LD
Sbjct: 26 HGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAILDA 85
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
L RC +G + + P+L K ++I
Sbjct: 86 LRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGA 122
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 11 WYIWKHQMSEFSHEYWTVAVDIKT---NFRTIADRYFLVDSLKVFLDHLGR----NRCIL 63
WY K + H+ AVD+ N R + + + D + ++ + + +L
Sbjct: 26 WYKLKPLLESAGHK--VTAVDLSAAGINPRRLDEIHTFRDYSEPLMEVMASIPPDEKVVL 83
Query: 64 IGRDFGGSLVWSFLDKYPELVVKSIIINVPHP 95
+G FGG + ++ YPE + ++ ++ P
Sbjct: 84 LGHSFGGMSLGLAMETYPEKISVAVFMSAMMP 115
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 11 WYIWKHQMSEFSHEYWTVAVDIKT---NFRTIADRYFLVDSLKVFLDHLGR----NRCIL 63
WY K + H+ AVD+ N R + + + D + ++ + + +L
Sbjct: 26 WYKLKPLLESAGHK--VTAVDLSAAGINPRRLDEIHTFRDYSEPLMEVMASIPPDEKVVL 83
Query: 64 IGRDFGGSLVWSFLDKYPELVVKSIIINVPHP 95
+G FGG + ++ YPE + ++ ++ P
Sbjct: 84 LGHSFGGMSLGLAMETYPEKISVAVFMSAMMP 115
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 11 WYIWKHQMSEFSHEYWTVAVDIKT---NFRTIADRYFLVDSLKVFLDHLGR----NRCIL 63
WY K + H+ AVD+ N R + + + D + ++ + + +L
Sbjct: 20 WYKLKPLLESAGHK--VTAVDLSAAGINPRRLDEIHTFRDYSEPLMEVMASIPPDEKVVL 77
Query: 64 IGRDFGGSLVWSFLDKYPELVVKSIIINVPHP 95
+G FGG + ++ YPE + ++ ++ P
Sbjct: 78 LGHSFGGMSLGLAMETYPEKISVAVFMSAMMP 109
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 11 WYIWKHQMSEFSHEYWTVAVDIKT---NFRTIADRYFLVDSLKVFLDHLGR----NRCIL 63
WY K + H+ AVD+ N R + + + D + ++ + + +L
Sbjct: 26 WYKLKPLLESAGHK--VTAVDLSAAGINPRRLDEIHTFRDYSEPLMEVMASIPPDEKVVL 83
Query: 64 IGRDFGGSLVWSFLDKYPELVVKSIIINVPHP 95
+G FGG + ++ YPE + ++ ++ P
Sbjct: 84 LGHSFGGMSLGLAMETYPEKISVAVFMSAMMP 115
>pdb|1S4N|A Chain A, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
Kre2pMNT1P
pdb|1S4N|B Chain B, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
Kre2pMNT1P
pdb|1S4O|A Chain A, Crystal Structure Of Yeast Alpha1,2-mannosyltransferase
Kre2p/mnt1p: Binary Complex With Gdp/mn
pdb|1S4O|B Chain B, Crystal Structure Of Yeast Alpha1,2-mannosyltransferase
Kre2p/mnt1p: Binary Complex With Gdp/mn
pdb|1S4P|A Chain A, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
Kre2pMNT1P: Ternary Complex With GdpMN AND
METHYL-Alpha-Mannoside Acceptor
pdb|1S4P|B Chain B, Crystal Structure Of Yeast Alpha1,2-Mannosyltransferase
Kre2pMNT1P: Ternary Complex With GdpMN AND
METHYL-Alpha-Mannoside Acceptor
Length = 348
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 9 ESWYIWKHQMSEFSHEYWTVAVDIK 33
+S + W+H++ E YW V DIK
Sbjct: 133 QSGFFWRHELLEEYDWYWRVEPDIK 157
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 57 GRNRCILIGRDFGGSLVWSFLDKYPE----LVVKSIIINVPHPAVFKQELKKMSQLIKTR 112
G + L+G +GG+L ++ KY + L+V + +VP +K+M++LI
Sbjct: 95 GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP------LTVKEMNRLIDEL 148
Query: 113 SGK 115
K
Sbjct: 149 PAK 151
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 57 GRNRCILIGRDFGGSLVWSFLDKYPE----LVVKSIIINVPHPAVFKQELKKMSQLIKTR 112
G + L+G +GG+L ++ KY + L+V + +VP +K+M++LI
Sbjct: 95 GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP------LTVKEMNRLIDEL 148
Query: 113 SGK 115
K
Sbjct: 149 PAK 151
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 57 GRNRCILIGRDFGGSLVWSFLDKYPE----LVVKSIIINVPHPAVFKQELKKMSQLIKTR 112
G + L+G +GG+L ++ KY + L+V + +VP +K+M++LI
Sbjct: 95 GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP------LTVKEMNRLIDEL 148
Query: 113 SGK 115
K
Sbjct: 149 PAK 151
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 57 GRNRCILIGRDFGGSLVWSFLDKYPE----LVVKSIIINVPHPAVFKQELKKMSQLIKTR 112
G + L+G +GG+L ++ KY + L+V + +VP +K+M++LI
Sbjct: 95 GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP------LTVKEMNRLIDEL 148
Query: 113 SGK 115
K
Sbjct: 149 PAK 151
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 57 GRNRCILIGRDFGGSLVWSFLDKYPE----LVVKSIIINVPHPAVFKQELKKMSQLIKTR 112
G + L+G +GG+L ++ KY + L+V + +VP +K+M++LI
Sbjct: 95 GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP------LTVKEMNRLIDEL 148
Query: 113 SGK 115
K
Sbjct: 149 PAK 151
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 67 DFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKMSQ 107
D GG L +D+YPELV K I+ K K++S+
Sbjct: 129 DDGGDLTNLVIDRYPELVPKIFGISEETTTGVKNLYKRLSK 169
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 10 SWYIWKHQMSEFSHEYWTVAVDIK---TNFRTIADRYFLVD----SLKVFLDHLGRNRCI 62
SWY K + H+ A+D+ T+ R I + L D ++ + I
Sbjct: 19 SWYKLKPLLEAAGHK--VTALDLAASGTDLRKIEELRTLYDYTLPLXELXESLSADEKVI 76
Query: 63 LIGRDFGGSLVWSFLDKYPELVVKSIIINVPHP 95
L+G GG + +KYP+ + ++ + P
Sbjct: 77 LVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXP 109
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI----------KTNFRTIADRYFLVDSLK 50
+L LHGFP++ +W + + + + D+ T + + L
Sbjct: 36 LLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLI 95
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
++ LG L G + G + + P + K ++++
Sbjct: 96 EAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDI 137
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 10 SWYIWKHQMSEFSHEYWTVAVDIK---TNFRTIADRYFLVD----SLKVFLDHLGRNRCI 62
SWY K + H+ A+D+ T+ R I + L D ++ + I
Sbjct: 19 SWYKLKPLLEAAGHK--VTALDLAASGTDLRKIEELRTLYDYTLPLXELXESLSADEKVI 76
Query: 63 LIGRDFGGSLVWSFLDKYPELVVKSIIINVPHP 95
L+G GG + +KYP+ + ++ + P
Sbjct: 77 LVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXP 109
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN---------VPHPAVFK 99
LK +D L + L+G GG +F K+PE V K +++ P P
Sbjct: 97 LKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPT--- 153
Query: 100 QELKKMSQLIK 110
+ +K+++QL +
Sbjct: 154 EGIKRLNQLYR 164
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI---KTNFRTIADRYFLVDSLKVF----- 52
++FLHG S Y+W+H + + D+ + ++ Y L+D K
Sbjct: 47 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFE 106
Query: 53 LDHLGRNRCILIGRDFGGSLVWSF 76
L +L + + I +G D+G +L + +
Sbjct: 107 LLNLPK-KIIFVGHDWGAALAFHY 129
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI---KTNFRTIADRYFLVDSLKVF----- 52
++FLHG S Y+W+H + + D+ + ++ Y L+D K
Sbjct: 47 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFE 106
Query: 53 LDHLGRNRCILIGRDFGGSLVWSF 76
L +L + + I +G D+G +L + +
Sbjct: 107 LLNLPK-KIIFVGHDWGAALAFHY 129
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI---KTNFRTIADRYFLVDSLKVF----- 52
++FLHG S Y+W+H + + D+ + ++ Y L+D K
Sbjct: 46 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFE 105
Query: 53 LDHLGRNRCILIGRDFGGSLVWSF 76
L +L + + I +G D+G +L + +
Sbjct: 106 LLNLPK-KIIFVGHDWGAALAFHY 128
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI---KTNFRTIADRYFLVDSLKVF----- 52
++FLHG S Y+W+H + + D+ + ++ Y L+D K
Sbjct: 46 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFE 105
Query: 53 LDHLGRNRCILIGRDFGGSLVWSF 76
L +L + + I +G D+G +L + +
Sbjct: 106 LLNLPK-KIIFVGHDWGAALAFHY 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,662,847
Number of Sequences: 62578
Number of extensions: 135948
Number of successful extensions: 559
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 96
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)