RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1324
(115 letters)
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 63.2 bits (154), Expect = 1e-13
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 15/123 (12%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVD---------IKTNFRTIADRYFLVDSLKVF 52
+ LHG S W+ + Y +A D ++ D L
Sbjct: 2 VLLHGAGGSAESWRPLAEALAAGYRVLAPDLPGHGDSDGPPRTPYSLED---DAADLAAL 58
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHP---AVFKQELKKMSQLI 109
LD LG +L+G GG++ + + PE V ++I+ P + + + L+
Sbjct: 59 LDALGLGPVVLVGHSLGGAVALAAAARRPERVAGLVLISPPLRDLEELLAADAAALLALL 118
Query: 110 KTR 112
+
Sbjct: 119 RAA 121
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 56.2 bits (134), Expect = 1e-10
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE---YWTVAVDI---KTNFRTIADRYFLVDSLKVFLD 54
++ LHGFP S +W+ Y +A D+ + D L LD
Sbjct: 24 LVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSDPAGYSLSAYADDLAALLD 83
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPA 96
LG + +L+G GG++ + ++P+ V ++I P
Sbjct: 84 ALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPP 125
>gnl|CDD|178633 PLN03084, PLN03084, alpha/beta hydrolase fold protein; Provisional.
Length = 383
Score = 41.0 bits (96), Expect = 4e-05
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVD-----------IKTNFRTIADRYFLVDSL 49
+L +HGFP Y ++ + S Y +A D F D Y V SL
Sbjct: 130 VLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSDKPQPGYGFNYTLDEY--VSSL 187
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVP 93
+ +D L ++ L+ + + V + +P+ + K I++N P
Sbjct: 188 ESLIDELKSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPP 231
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 40.6 bits (95), Expect = 4e-05
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 45 LVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFK 99
L + L+ LD LG ++ L+G GG + ++ KYP+ V +++ HPA
Sbjct: 28 LAEDLEALLDALGLDKVNLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHPAGLS 82
>gnl|CDD|234315 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 252
Score = 38.7 bits (91), Expect = 2e-04
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 18/101 (17%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------------KTNFRTIADRYFLVDS 48
+FLHGF S W+ + + +A+D+ + +F IA
Sbjct: 6 VFLHGFLGSGADWQALIELLGPHFRCLAIDLPGHGSSQSPSDIERYDFEEIAQ-----LL 60
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSII 89
L LD LG L+G GG + + +YPE V I+
Sbjct: 61 LATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQGLIL 101
>gnl|CDD|235135 PRK03592, PRK03592, haloalkane dehalogenase; Provisional.
Length = 295
Score = 38.1 bits (89), Expect = 3e-04
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRYF-LVDSLKVF 52
++FLHG P S Y+W++ + + +A D+ K + I + L +
Sbjct: 30 IVFLHGNPTSSYLWRNIIPHLAGLGRCLAPDLIGMGASDKPD---IDYTFADHARYLDAW 86
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELV 84
D LG + +L+G D+G +L + + ++P+ V
Sbjct: 87 FDALGLDDVVLVGHDWGSALGFDWAARHPDRV 118
>gnl|CDD|211851 TIGR03611, RutD, pyrimidine utilization protein D. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the hydrolase, alpha/beta fold
family defined by pfam00067.
Length = 248
Score = 35.1 bits (81), Expect = 0.004
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIK---TNFRTIADRY---FLVDSLKVFLD 54
++ G S W Q++ + + V D + + + Y + D + LD
Sbjct: 15 VVLSSGLGGSGSYWAPQLAVLTQRFHVVTYDHRGTGRSPGELPPDYSIAHMADDVLQLLD 74
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
LG R +G GG + YPE + ++IN
Sbjct: 75 ALGIERFHFVGHALGGLIGLQLALDYPERLTSLVLIN 111
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 33.4 bits (77), Expect = 0.013
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 44 FLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELV 84
L ++ FLD LG R L+G GG++ + P+ V
Sbjct: 182 ELAAAVLAFLDALGIERAHLVGHSMGGAVALRLAARAPQRV 222
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 31.2 bits (71), Expect = 0.091
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 12 YIWK-HQMSEFSHEYWTVAVDIKTNFRTIADRY 43
WK + + + E + F ADR
Sbjct: 343 NGWKTERQEKNAKEIAEEVGKLYDEFGKFADRL 375
>gnl|CDD|179554 PRK03204, PRK03204, haloalkane dehalogenase; Provisional.
Length = 286
Score = 31.0 bits (70), Expect = 0.098
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI--------KTNF-RTIADRYFLVDSLKV 51
+L HG P ++++ + + VA D + F I + +
Sbjct: 37 ILLCHGNPTWSFLYRDIIVALRDRFRCVAPDYLGFGLSERPSGFGYQIDE---HARVIGE 93
Query: 52 FLDHLGRNRCILIGRDFGG 70
F+DHLG +R + +G+D+GG
Sbjct: 94 FVDHLGLDRYLSMGQDWGG 112
>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28. These
serine proteases include several eukaryotic enzymes such
as lysosomal Pro-X carboxypeptidase,
dipeptidyl-peptidase II, and thymus-specific serine
peptidase.
Length = 433
Score = 30.8 bits (70), Expect = 0.13
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 39 IADRYFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAV- 97
+AD + ++ + L ++ I G + GSL KYP LVV ++ + P A
Sbjct: 93 LADVASFIKAMNQKFNGLSSSKWITFGGSYSGSLAAWARKKYPHLVVGAVASSAPLLAKV 152
Query: 98 -FKQELKKMSQLIKTRSGK 115
FK+ + + G+
Sbjct: 153 DFKEYNMVVETSLAQTGGE 171
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 29.7 bits (67), Expect = 0.21
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 7/106 (6%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADRYFLVDSLKVFLDHLGR--N 59
+ LHG + + + V ++ + L
Sbjct: 3 VLLHGAGGDPEAYAPLARALASRGYNVVA---VDYPGHGAS-LGAPDAEAVLADAPLDPE 58
Query: 60 RCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKM 105
R +L+G GG + + P V ++++ P +L K+
Sbjct: 59 RIVLVGHSLGGGVALLLAARDPR-VKAAVVLAAGDPPDALDDLAKL 103
>gnl|CDD|217163 pfam02646, RmuC, RmuC family. This family contains several
bacterial RmuC DNA recombination proteins. The function
of the RMUC protein is unknown but it is suspected that
it is either a structural protein that protects DNA
against nuclease action, or is itself involved in DNA
cleavage at the regions of DNA secondary structures.
Length = 301
Score = 29.2 bits (66), Expect = 0.43
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 12 YIWK-HQMSEFSHEYWTVAVDIKTNFRTIADRY 43
W+ ++ + + E +A ++ F ADR
Sbjct: 220 NGWRTERIEKNAKEIAELAGELYDEFGKFADRL 252
>gnl|CDD|131480 TIGR02427, protocat_pcaD, 3-oxoadipate enol-lactonase. Members of
this family are 3-oxoadipate enol-lactonase. Note that
the substrate is known as 3-oxoadipate enol-lactone,
2-oxo-2,3-dihydrofuran-5-acetate,
4,5-Dihydro-5-oxofuran-2-acetate, and
5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the
catalyzes the fourth step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. This enzyme also acts in catechol
degradation. In genomes that catabolize both catechol
and protocatechuate, two forms of this enzyme may be
found. All members of the seed alignment for this model
were chosen from within protocatechuate degradation
operons of at least three genes of the pathway, from
genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 251
Score = 28.9 bits (65), Expect = 0.50
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 13 IWKHQMSEFSHEYWTVAVDIKTNFR--------TIADRYFLVDSLKVFLDHLGRNRCILI 64
+W + + ++ + D + + +I D L D + LDHLG R +
Sbjct: 28 MWDPVLPALTPDFRVLRYDKRGHGLSDAPEGPYSIED---LADDVLALLDHLGIERAVFC 84
Query: 65 GRDFGGSLVWSFLDKYPELVVKSIIINVPH 94
G GG + + P+ V ++ N
Sbjct: 85 GLSLGGLIAQGLAARRPDRVRALVLSNTAA 114
>gnl|CDD|239735 cd03766, Gn_AT_II_novel, Gn_AT_II_novel. This asparagine
synthase-related domain is present in eukaryotes but its
function has not yet been determined. The glutaminase
domain catalyzes an amide nitrogen transfer from
glutamine to the appropriate substrate. In this process,
glutamine is hydrolyzed to glutamic acid and ammonia.
This domain is related to members of the Ntn (N-terminal
nucleophile) hydrolase superfamily and is found at the
N-terminus of enzymes such as glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS). GLMS
catalyzes the formation of glucosamine 6-phosphate from
fructose 6-phosphate and glutamine in amino sugar
synthesis. GPATase catalyzes the first step in purine
biosynthesis, an amide transfer from glutamine to PRPP,
resulting in phosphoribosylamine, pyrophosphate and
glutamate. Asparagine synthetase B synthesizes
asparagine from aspartate and glutamine. Beta-LS
catalyzes the formation of the beta-lactam ring in the
beta-lactamase inhibitor clavulanic acid. GltS
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine. These enzymes are generally dimers, but
GPATase also exists as a homotetramer.
Length = 181
Score = 28.4 bits (64), Expect = 0.56
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 51 VFLDHLGRNRCILIGRDFGG--SLVWSFLDKYPELVVKSI 88
++ D + GRD G SL++ EL + S+
Sbjct: 126 IYYD--ASENKLYFGRDCLGRRSLLYKLDPNGFELSISSV 163
>gnl|CDD|215315 PLN02578, PLN02578, hydrolase.
Length = 354
Score = 28.7 bits (64), Expect = 0.63
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVD-IKTNFRTIA----DRYFLVDSLKVFLDH 55
++ +HGF S + W++ + E + +Y A+D + + A D D + F+
Sbjct: 89 IVLIHGFGASAFHWRYNIPELAKKYKVYALDLLGFGWSDKALIEYDAMVWRDQVADFVKE 148
Query: 56 LGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
+ + +L+G GG S YPELV ++N
Sbjct: 149 VVKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLN 184
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 28.2 bits (63), Expect = 0.89
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
LD L + IG GG V + P+ + K + I++
Sbjct: 75 LDALQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114
>gnl|CDD|132100 TIGR03056, bchO_mg_che_rel, putative magnesium chelatase accessory
protein. Members of this family belong to the
alpha/beta fold family hydrolases (pfam00561). Members
are found in bacterial genomes if and only if they
encoded for anoxygenic photosynthetic systems similar to
that of Rhodobacter capsulatus and other
alpha-Proteobacteria. Members often are encoded in the
same operon as subunits of the protoporphyrin IX
magnesium chelatase, and were once designated BchO. No
literature supports a role as an actual subunit of
magnesium chelatase, but an accessory role is possible,
as suggested by placement by its probable hydrolase
activity [Energy metabolism, Photosynthesis].
Length = 278
Score = 27.5 bits (61), Expect = 1.5
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADRYF------LVDSLKVFLD 54
+L LHG S + W+ M + + VA D+ + T A F + + L
Sbjct: 31 LLLLHGTGASTHSWRDLMPPLARSFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLSALCA 90
Query: 55 HLGRNRCILIGRDFGGSL 72
G + +IG G ++
Sbjct: 91 AEGLSPDGVIGHSAGAAI 108
>gnl|CDD|224932 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
and metabolism].
Length = 368
Score = 27.3 bits (61), Expect = 1.7
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 38 TIADRYFLVDSLKVFLDHLGRNRC-ILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPA 96
TI D +V + ++ LD LG + ++G GG + +YP+ V ++I I
Sbjct: 128 TIRD---MVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARL 184
>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 27.3 bits (61), Expect = 1.9
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDIK-----TNFRTIADRYF--LVDSLKVFLD 54
+ +HG+P++ +W + + VA D++ + + A L D +D
Sbjct: 29 VLVHGYPDNHEVWDGVAPLLADRFRVVAYDVRGAGRSSAPKRTAAYTLARLADDFAAVID 88
Query: 55 HLGRNRCI-LIGRDFGGSLVWSFL 77
+ +R + L+ D+G W +
Sbjct: 89 AVSPDRPVHLLAHDWGSIQGWEAV 112
>gnl|CDD|188121 TIGR01250, pro_imino_pep_2, proline-specific peptidase, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 289
Score = 27.0 bits (60), Expect = 2.0
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 18/74 (24%)
Query: 24 EYWTVAVDIKTNFRTIADRYFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPE- 82
E WT+ D + VD L+ + LG ++ L+G +GG L + KY +
Sbjct: 76 ELWTI------------DYF--VDELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQH 121
Query: 83 ---LVVKSIIINVP 93
L++ S++ + P
Sbjct: 122 LKGLIISSMLDSAP 135
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 27.0 bits (60), Expect = 2.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 98 FKQELKKMSQLIKT 111
FKQE++KMS+ IK
Sbjct: 242 FKQEMEKMSKKIKK 255
>gnl|CDD|132386 TIGR03343, biphenyl_bphD, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase. Members of this family are
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or
HOPD hydrolase, the BphD protein of biphenyl
degradation. BphD acts on the product of ring
meta-cleavage by BphC. Many species carrying bphC and
bphD are capable of degrading polychlorinated biphenyls
as well as biphenyl itself.
Length = 282
Score = 26.4 bits (58), Expect = 3.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 48 SLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIII 90
++K +D L + L+G GG+ +F +YP+ + K I++
Sbjct: 90 AVKGLMDALDIEKAHLVGNSMGGATALNFALEYPDRIGKLILM 132
>gnl|CDD|190521 pfam03096, Ndr, Ndr family. This family consists of proteins from
different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3.
Their similarity was previously noted. The precise
molecular and cellular function of members of this
family is still unknown. Yet, they are known to be
involved in cellular differentiation events. The Ndr1
group was the first to be discovered. Their expression
is repressed by the proto-oncogenes N-myc and c-myc, and
in line with this observation, Ndr1 protein expression
is down-regulated in neoplastic cells, and is
reactivated when differentiation is induced by chemicals
such as retinoic acid. Ndr2 and Ndr3 expression is not
under the control of N-myc or c-myc. Ndr1 expression is
also activated by several chemicals: tunicamycin and
homocysteine induce Ndr1 in human umbilical endothelial
cells; nickel induces Ndr1 in several cell types.
Members of this family are found in wide variety of
multicellular eukaryotes, including an Ndr1 type protein
in Helianthus annuus (sunflower), known as Sf21.
Interestingly, the highest scoring matches in the noise
are all alpha/beta hydrolases pfam00561, suggesting that
this family may have an enzymatic function (Bateman A
pers. obs.).
Length = 284
Score = 26.5 bits (59), Expect = 3.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 45 LVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
L D + V LDH I +G G ++ F K+PE V ++IN
Sbjct: 85 LADMIPVVLDHFRLKSVIGMGVGAGAYILARFALKHPERVEGLVLINP 132
>gnl|CDD|131294 TIGR02240, PHA_depoly_arom, poly(3-hydroxyalkanoate) depolymerase.
This family consists of the polyhydroxyalkanoic acid
(PHA) depolymerase of Pseudomonas oleovorans,
Pseudomonas putida BM01, and related species. This
enzyme is part of polyester storage and mobilization
system as in many bacteria. However, species containing
this enzyme are unusual in their capacity to produce
aromatic polyesters when grown on carbon sources such as
benzoic acid or phenylacetic acid [Energy metabolism,
Other].
Length = 276
Score = 26.5 bits (58), Expect = 3.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAV 97
LD+L + IG +GG+L F YPE K I+ AV
Sbjct: 85 LDYLDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAV 129
>gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction
only].
Length = 387
Score = 26.4 bits (58), Expect = 4.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 58 RNRCILIGRDFGGSLVWSFLDKYPELVVKSIII 90
R+R +IG GG W+ +K+P+ ++ I
Sbjct: 268 RSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPI 300
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 26.2 bits (58), Expect = 5.1
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 48 SLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKMSQ 107
L V + G+ LI D S + L P LVV S I + + +++S
Sbjct: 245 LLGVDIVRNGK----LIKEDASESDLLELLGGLPVLVV-SPIGGQGF--LLGRGNQQISP 297
Query: 108 LIKTRSGK 115
+ + GK
Sbjct: 298 RVLRKVGK 305
>gnl|CDD|215484 PLN02894, PLN02894, hydrolase, alpha/beta fold family protein.
Length = 402
Score = 26.0 bits (57), Expect = 5.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 44 FLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELK 103
+ +DS + + + IL+G FGG + + K+PE V I++ PA F E
Sbjct: 161 WFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVG---PAGFSSESD 217
Query: 104 KMS-QLIKTRS 113
S L K R+
Sbjct: 218 DKSEWLTKFRA 228
>gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase;
Provisional.
Length = 353
Score = 25.9 bits (58), Expect = 6.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 67 DFGGSLVWSFLDKYPELVV 85
DFGG +D+YP L+V
Sbjct: 186 DFGGESAIPLIDRYPNLLV 204
>gnl|CDD|217456 pfam03254, XG_FTase, Xyloglucan fucosyltransferase. Plant cell
walls are crucial for development, signal transduction,
and disease resistance in plants. Cell walls are made of
cellulose, hemicelluloses, and pectins. Xyloglucan (XG),
the principal load-bearing hemicellulose of
dicotyledonous plants, has a terminal fucosyl residue.
This fucosyltransferase adds this residue.
Length = 473
Score = 25.7 bits (57), Expect = 6.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 75 SFLDKYPELVVKSIIINVPH----PAVFKQELKKM 105
S L K P L++KS VP P+ F+QEL K+
Sbjct: 227 SLLRKVPWLILKSDNYFVPSLFLVPS-FQQELSKL 260
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 25.6 bits (57), Expect = 6.8
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 73 VWSFLDKYPELVVKSIIINVPHP 95
V +D+ P VV+S +I VPHP
Sbjct: 415 VEGEIDELPG-VVESAVIGVPHP 436
>gnl|CDD|223064 PHA03375, PHA03375, hypothetical protein; Provisional.
Length = 844
Score = 25.6 bits (56), Expect = 7.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 45 LVDSLKVFLDHLGRNRCIL 63
LV + K+ LDHLGRN +L
Sbjct: 766 LVRNKKIKLDHLGRNANVL 784
>gnl|CDD|145929 pfam03043, Herpes_UL87, Herpesvirus UL87 family. Members of this
family are functionally uncharacterized. This family
groups together EBV BcRF1, HSV-6 U58, HVS-1 24 and HCMV
UL87. The proteins range from 575 to 950 amino acids in
length.
Length = 533
Score = 25.3 bits (56), Expect = 8.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 45 LVDSLKVFLDHLGRN 59
LV + K LD LGRN
Sbjct: 485 LVRNKKTRLDELGRN 499
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.457
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,026,694
Number of extensions: 528188
Number of successful extensions: 664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 41
Length of query: 115
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 36
Effective length of database: 7,433,636
Effective search space: 267610896
Effective search space used: 267610896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)