RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1324
(115 letters)
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB:
3cxu_A*
Length = 328
Score = 94.4 bits (235), Expect = 1e-24
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFS-HEYWTVAVDI-------KTNFRTIA--DRYFLVDSLK 50
+LF+HGFPE WY W+HQM + Y VA D+ + LV +
Sbjct: 34 ILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVV 93
Query: 51 VFLDHLGRN--RCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVF 98
L+ + N + ++ D+G + W P+ V + ++V
Sbjct: 94 ALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVHFSKRN 143
>2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural
mycobacterium tuberculosis structural proteomics
project, X hydrolase; 2.10A {Mycobacterium tuberculosis}
PDB: 2zjf_A*
Length = 356
Score = 94.3 bits (234), Expect = 1e-24
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 1 MLFLHGFPESWYIWKHQMSEFS-HEYWTVAVDIK----TNFRTIADRY---FLVDSLKVF 52
++ LHGFPESWY W+HQ+ + Y VA+D + ++ + Y LV +
Sbjct: 30 VVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGV 89
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQEL 102
LD G + ++G D+G + W+F +P+ + I+VP L
Sbjct: 90 LDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPFAGRGVIGL 139
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold,
epoxide degradation, epichlorohydrin; 2.10A
{Agrobacterium tumefaciens} SCOP: c.69.1.11
Length = 294
Score = 89.2 bits (222), Expect = 5e-23
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIA--DRYFLVDSLKV 51
+L LHG+P W+ W + + Y + D+ K + ++ D
Sbjct: 32 LLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADDQAA 91
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVF 98
LD LG + ++G DF ++ F+ KY + V+K+ I + P
Sbjct: 92 LLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFG 138
>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A
{Burkholderia SP} PDB: 1y37_A
Length = 304
Score = 86.2 bits (214), Expect = 8e-22
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 10/112 (8%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRY---FLVDSLK 50
+L LHGFP++ ++W ++EY V D+ K Y + +
Sbjct: 28 LLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMASDQR 87
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQEL 102
+ LG R L+G GG +P+ V+ ++++ V +E+
Sbjct: 88 ELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEV 139
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
3pi6_A
Length = 301
Score = 85.4 bits (212), Expect = 2e-21
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 14/123 (11%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI---------KTNFRTIADRYFLVDSLKV 51
++ +HGF ++WY W M E + + +A D+ KT + + L
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYSGEQ----VAVYLHK 88
Query: 52 FLDHLGRNRCI-LIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKMSQLIK 110
+R L+ D G + + K + + + + P P + +
Sbjct: 89 LARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQGE 148
Query: 111 TRS 113
+
Sbjct: 149 SLV 151
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris}
PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Length = 306
Score = 85.0 bits (211), Expect = 2e-21
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRY---FLVDSLK 50
+L LHGFP++ +W + + + + D+ Y + L
Sbjct: 36 LLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLI 95
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKMSQL 108
++ LG L G + G + + P + K ++++ + Q + + L
Sbjct: 96 EAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEYWQRMNRAYAL 153
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 86.5 bits (214), Expect = 3e-21
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 1 MLFLHGFPESWYIWKHQMSEFS-HEYWTVAVDI-------KTNFRTIADRYFLVDSLKVF 52
+ HGFPESWY W++Q+ + Y +A+D+ L + F
Sbjct: 261 VCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTF 320
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQ 100
LD LG ++ + IG D+GG LVW YPE V +N P
Sbjct: 321 LDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPN 368
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 83.8 bits (208), Expect = 6e-21
Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRY---FLVDSLK 50
+L LHG+P++ +W ++ + VA D+ + Y +
Sbjct: 28 LLLLHGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVMAQDQV 87
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQEL 102
+ LG + ++G D G + +P V K ++++ +
Sbjct: 88 EVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPTHKMYRTT 139
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A
{Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Length = 316
Score = 83.5 bits (207), Expect = 9e-21
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFR-TIADRYFLVDSLKVF 52
+LFLHG P S +IW++ + S +A D+ K + D V L F
Sbjct: 32 VLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFD---HVRYLDAF 88
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQEL 102
++ G L+ +D+G +L + + P+ V + P Q+
Sbjct: 89 IEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDF 138
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain,
catalytic triad (A His272, Glu130), mutant, I135F,
haloalkanes; 0.95A {Rhodococcus SP} PDB: 3fwh_A 3fbw_A
3rlt_A 3rk4_A 1bn6_A 1bn7_A 1cqw_A 2v9z_A
Length = 299
Score = 83.4 bits (207), Expect = 9e-21
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFR-TIADRYFLVDSLKVF 52
+LFLHG P S Y+W++ + + + +A D+ K + D V L F
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDD---HVRYLDAF 91
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKMSQ 107
++ LG +L+ D+G +L + + + PE V + P E + ++
Sbjct: 92 IEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFAR 146
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase;
2.20A {Unidentified}
Length = 309
Score = 83.6 bits (207), Expect = 9e-21
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEF-SHEYWTVAVDI-------KTNFR-TIADRYFLVDSLKV 51
+LFLHG P S Y+W++ + + Y VA D+ K + + D V +
Sbjct: 32 VLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGMGDSAKPDIEYRLQD---HVAYMDG 88
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQEL 102
F+D LG + +L+ D+G + P+ V + P
Sbjct: 89 FIDALGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPS 139
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold;
1.90A {Plesiocystis pacifica}
Length = 297
Score = 81.7 bits (202), Expect = 4e-20
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVD----------IKTNFRTIADRYFLVDSL 49
L LHG P ++++ + F+ VA D T SL
Sbjct: 49 FLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVYTFGF---HRRSL 105
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVF 98
FLD L R L+ +D+GG L + P+LV + I++N
Sbjct: 106 LAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGL 154
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 78.5 bits (194), Expect = 5e-19
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 16/120 (13%)
Query: 1 MLFLHGFPESWYIWKHQMSEFS-HEYWTVAVDIKTNFR---------TIADRYF--LVDS 48
+L +HG E W+ + Y VA D + +
Sbjct: 29 VLCIHGILEQGLAWQEVALPLAAQGYRVVAPD----LFGHGRSSHLEMVTSYSSLTFLAQ 84
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKMSQL 108
+ + L +L+G G L + P+ + + I++ +P PA ++ ++QL
Sbjct: 85 IDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQL 144
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 78.7 bits (194), Expect = 6e-19
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 1 MLFLHGFPESWYIWKHQMSEFS-HEYWTVAVDI----KTNFRTIADRY---FLVDSLKVF 52
+L +HG W+ + + Y +AVD K++ + +Y L +
Sbjct: 49 ILLMHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSS-KPAHYQYSFQQLAANTHAL 107
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQE 101
L+ LG R +IG GG L + YP V + +++N +K
Sbjct: 108 LERLGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKAL 156
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane
dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase;
0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB:
1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A
1iz8_A* 1k5p_A 1k63_A 1k6e_A
Length = 302
Score = 77.9 bits (192), Expect = 1e-18
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRYF--LVDSLKV 51
+LF HG P S Y+W++ M + +A D+ K + + D L
Sbjct: 32 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDA 91
Query: 52 FLDHLG-RNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQEL 102
+ L +R +L+ D+G +L + + ++ E V + + +
Sbjct: 92 LWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADF 143
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 77.9 bits (192), Expect = 1e-18
Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 14/123 (11%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVD---------IKTNFRTIADRYFLVDSLKV 51
++FLHG S Y+W+H + + D + D L
Sbjct: 46 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLD---HYKYLTA 102
Query: 52 FLDHLGRNR-CILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAV-FKQELKKMSQLI 109
+ + L + I +G D+G +L + + ++ + + + + + E + + I
Sbjct: 103 WFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDEWPDIEEDI 162
Query: 110 KTR 112
Sbjct: 163 ALI 165
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei
structural genomics consortium, TBSGC, hydrolase; 1.19A
{Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Length = 297
Score = 77.5 bits (191), Expect = 2e-18
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRYF--LVDSLKV 51
++F HG P S Y+W++ M VA D+ K + + D L
Sbjct: 31 IVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGEQRDFLFA 90
Query: 52 FLDHLG-RNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQEL 102
D L + +L+ D+G +L + + +++ + V + + +
Sbjct: 91 LWDALDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWADW 142
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 73.5 bits (181), Expect = 4e-17
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 13/111 (11%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI----------KTNFRTIADRYFLVDSLK 50
+ H + E + F+ Y V++ + ++ + + L+
Sbjct: 26 LCVTHLYSEYNDNGNTFANPFTDHYSVYLVNLKGCGNSDSAKNDSEYSMTE---TIKDLE 82
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQE 101
+ L N+ G GG L + + E + K I+ +
Sbjct: 83 AIREALYINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASH 133
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A
{Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A
1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A
2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Length = 310
Score = 73.6 bits (181), Expect = 4e-17
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 1 MLFLHGFPESWYIWKHQMSEFS-HEYWTVAVDI----KTNFRTIADRY---FLVDSLKVF 52
L LHG P Y+++ + F+ +A D K++ + Y F + L
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLAL 109
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPA 96
++ L L+ +D+GG L + P + II+N
Sbjct: 110 IERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMT 153
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase;
2.60A {Pseudomonas putida}
Length = 264
Score = 70.6 bits (173), Expect = 4e-16
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 21/114 (18%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-----------KTNFRTIADRYFLVDSLK 50
L G+ + ++K+ + ++ + D + +T+A L
Sbjct: 25 FLLSGWCQDHRLFKNLAPLLARDFHVICPDWRGHDAKQTDSGDFDSQTLAQD------LL 78
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSF-LDKYPELVVKSIIINV---PHPAVFKQ 100
F+D G ++ G + + K+III+ PHP ++Q
Sbjct: 79 AFIDAKGIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGFWQQ 132
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 70.9 bits (174), Expect = 5e-16
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 15/106 (14%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRY---FLVDSLK 50
MLF HG + +++ M S + T+AVD K Y D +
Sbjct: 71 MLFFHGITSNSAVFEPLMIRLSDRFTTIAVDQRGHGLSDKP-----ETGYEANDYADDIA 125
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPA 96
+ L R IL+G G + KYP+LV + I+
Sbjct: 126 GLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYI 171
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 70.0 bits (172), Expect = 8e-16
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 2 LFLHGFPESWYIWKHQMSEF-SHEYWTVAVDIKTNFR------------TIADRYFLVDS 48
+ +HGFP S + W+ Q + Y + D R
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYD----RRGFGQSSQPTTGYDYDT---FAAD 79
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKY-PELVVKSIIINVPHPAVFKQE 101
L L+ L +L+G G V ++ Y + K + P + K +
Sbjct: 80 LNTVLETLDLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTD 133
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 67.0 bits (164), Expect = 1e-14
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 1 MLFLHGFP---ESWYIWKHQMSEFSHEYWTVAVDI----KTNFRTIADRY---FLVDSLK 50
++ +HG ++ W+ + S Y +A D+ T+ R Y VD +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTD-RPENYNYSKDSWVDHII 86
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN-VPHPAVFKQELKKMSQLI 109
+D L + ++G FGG L + +Y E V + +++ + L +
Sbjct: 87 GIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYT 146
Query: 110 KTRSG 114
+
Sbjct: 147 PSIEN 151
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 66.8 bits (163), Expect = 2e-14
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 2 LFLHGFPESWYIWKHQMSEF-SHEYWTVAVDIKTNFR------------TIADRYFLVDS 48
+ +HGFP S + W+ Q + Y + D R
Sbjct: 28 VLIHGFPLSGHSWERQSAALLDAGYRVITYD----RRGFGQSSQPTTGYDYDT---FAAD 80
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKY-PELVVKSIIINVPHPAVFKQE 101
L L+ L +L+G G V ++ Y + + P + K +
Sbjct: 81 LNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTD 134
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase,
alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter
nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Length = 276
Score = 66.0 bits (161), Expect = 2e-14
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 24/117 (20%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFR------------TIADRYFLVDSL 49
L L G+ ++K+ + E ++ + + +R + V
Sbjct: 31 LLLPGWCHDHRVYKYLIQELDADFRVIVPN----WRGHGLSPSEVPDFGYQE---QVKDA 83
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKY-PELVVKSIIIN----VPHPAVFKQE 101
LD LG + + GG ++ L++ PE + II++ P P K
Sbjct: 84 LEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSL 140
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 65.0 bits (159), Expect = 6e-14
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 1 MLFLHGFP---ESWYIWKHQMSEFSHEYWTVAVDI--------KTNFRTIADRYFLVDSL 49
++ LHG SW + ++ + + +AVD + + +L
Sbjct: 39 VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNR--YAAMAL 96
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
K D LG R L+G GG F YP + +++
Sbjct: 97 KGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMG 138
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 63.8 bits (155), Expect = 1e-13
Identities = 11/116 (9%), Positives = 35/116 (30%), Gaps = 14/116 (12%)
Query: 1 MLFLHGF--PESWYIWKHQMSEFSHEYWTVAVDI---------KTNFRTIADRYFLVDSL 49
+FL G + + + + + + +D + D V+++
Sbjct: 44 FVFLSGAGFFSTADNFANIIDKLPDSIGILTIDAPNSGYSPVSNQANVGLRD---WVNAI 100
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKM 105
+ +H +L GG +++ + + I + +++
Sbjct: 101 LMIFEHFKFQSYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVMIYRAGFSSD 156
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 62.8 bits (153), Expect = 3e-13
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 2 LFLHGFPESWYIWKHQMSEF-SHEYWTVAVDI-------KTNFRTIADRYFLVDSLKVFL 53
+ +HG+P + W+ Q E + Y + D K N D + L L
Sbjct: 27 VLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGYDYDTF--AADLHTVL 84
Query: 54 DHLGRNRCILIGRDFGGSLVWSFLDKY-PELVVKSIIINVPHPAVFKQE 101
+ L +L+G G + ++ +Y E V K + P + +++
Sbjct: 85 ETLDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRD 133
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 61.4 bits (149), Expect = 5e-13
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 1 MLFLHGFPESWYIWKHQ--MSEFS-HEYWTVAVDI---------KTNFRTIADRYFLVDS 48
+ HG+ + W + +S Y A D + D +
Sbjct: 30 IALFHGYSFTSMDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRGDLKHAAEF 89
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQEL 102
++ +L G R +++G GG +V +YP++V I + K ++
Sbjct: 90 IRDYLKANGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVESLKGDM 143
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 61.9 bits (151), Expect = 6e-13
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 2 LFLHGFPESWYIWKHQMSEF-SHEYWTVAVDIKTNFR------------TIADRYFLVDS 48
+F HG+P S W +QM F SH Y +A D R +
Sbjct: 25 VFHHGWPLSADDWDNQMLFFLSHGYRVIAHD----RRGHGRSDQPSTGHDMDT---YAAD 77
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKY-PELVVKSIIINVPHPAVFKQE 101
+ + L + IG GG V ++ + P V K+++++ P + K +
Sbjct: 78 VAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSD 131
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 61.6 bits (150), Expect = 9e-13
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 1 MLFLHGFP---ESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRYFLVDSLK 50
++ +HG ES W++ + + Y +A+D+ K + + + L
Sbjct: 39 VILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTAKPDIEY--TQDRRIRHLH 96
Query: 51 VFLDHLG-RNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
F+ + + ++G GG+ + ELV +++
Sbjct: 97 DFIKAMNFDGKVSIVGNSMGGATGLGVSVLHSELVNALVLMG 138
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 60.5 bits (147), Expect = 2e-12
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 2 LFLHGFPESWYIWKHQMSEFS-HEYWTVAVDI-------KTNFRTIADRYFLVDSLKVFL 53
+ +HG+P S W++Q+ Y + D + D + L L
Sbjct: 31 VLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYEYDTF--TSDLHQLL 88
Query: 54 DHLGRNRCILIGRDFGGSLVWSFLDKY-PELVVKSIIINVPHPAVFKQE 101
+ L L+G GG V ++ Y + + K + P ++K E
Sbjct: 89 EQLELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSE 137
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 60.4 bits (147), Expect = 2e-12
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 13/103 (12%)
Query: 2 LFLHGFPE---SWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRY---FLVDS 48
+ LHG + W+ + + + ++ VA D+ V+
Sbjct: 33 VLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSWVGMRVEQ 92
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
+ ++H G + ++G GG++ + + PE K ++
Sbjct: 93 ILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMG 135
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 59.2 bits (143), Expect = 4e-12
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 2 LFLHGFPESWYIWKH--QMSEFS-HEYWTVAVD-------IKTNFRTIADRYFLVDSLKV 51
L LHG S W++ + + Y VA+D + L
Sbjct: 36 LLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPIGELAPGSFLAA 95
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
+D L ++I G FL + + +
Sbjct: 96 VVDALELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVA 135
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 59.7 bits (145), Expect = 4e-12
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 2 LFLHGFPESWYIWKHQMSEFS-HEYWTVAVDI-------KTNFRTIADRYFLVDSLKVFL 53
+F HG+P + W+ QM + Y +A D + D Y D L +
Sbjct: 23 VFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSGNDMDTY--ADDLAQLI 80
Query: 54 DHLGRNRCILIGRDFGGSLVWSFLDKY-PELVVKSIIINVPHPAVFKQE 101
+HL +L G GG V ++ ++ V K+ +I+ P + K E
Sbjct: 81 EHLDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTE 129
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 59.7 bits (145), Expect = 4e-12
Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 25/106 (23%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIA----------------DRYFL 45
+FLHG S+ ++ I L
Sbjct: 25 IFLHGLSLDKQSTCLFFEPLSN---------VGQYQRIYLDLPGMGNSDPISPSTSDNVL 75
Query: 46 VDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
++ + +G R IL G +GG L + + + +
Sbjct: 76 ETLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTC 121
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 58.9 bits (143), Expect = 7e-12
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 12/99 (12%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVD---------IKTNFRTIADRYFLVDSLKVF 52
+FLHGF + + + +F+ Y + +D + L
Sbjct: 20 VFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQSSMDETWNFDY---ITTLLDRI 76
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
LD L G GG + + + I+ +
Sbjct: 77 LDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLILES 115
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 59.3 bits (144), Expect = 7e-12
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 14/102 (13%)
Query: 2 LFLHGFP---ESWYIWKHQMSEF-SHEYWTVAVDI--------KTNFRTIADRYFLVDSL 49
+ LHG W + + Y + +D N + +D L
Sbjct: 40 VLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSDLN--ARIL 97
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
K +D L + L+G GG +F K+PE V K +++
Sbjct: 98 KSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMG 139
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 58.9 bits (143), Expect = 8e-12
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 2 LFLHGFPESWYIWKHQMSEF-SHEYWTVAVDI-------KTNFRTIADRYFLVDSLKVFL 53
+F+HG+P + W+ Q+ Y +A D D + D L L
Sbjct: 23 VFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVWDGYDFDTF--ADDLNDLL 80
Query: 54 DHLGRNRCILIGRDFGGSLVWSFLDKY-PELVVKSIIINVPHPAVFKQE 101
L L+ GG + ++ ++ + +++++ P + K +
Sbjct: 81 TDLDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSD 129
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 58.1 bits (141), Expect = 2e-11
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDI---------KTNFRTIADRYFLVDSLKVF 52
+ LHG S +W ++++S +Y T AVDI + T D + L
Sbjct: 71 VLLHGALFSSTMWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTD---YANWLLDV 127
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELV 84
D+LG + +IG GG +FL + PE V
Sbjct: 128 FDNLGIEKSHMIGLSLGGLHTMNFLLRMPERV 159
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 57.3 bits (139), Expect = 3e-11
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 20/112 (17%)
Query: 2 LFLHGFPESWYIWKHQMSEF-SHEYWTVAVDIKTNFR------------TIADRYFLVDS 48
F HG+P S W Q+ F +H Y VA D R + D
Sbjct: 26 HFHHGWPLSADDWDAQLLFFLAHGYRVVAHD----RRGHGRSSQVWDGHDMDH---YADD 78
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQ 100
+ + HLG + +G GG V ++ ++PE V ++ P + Q
Sbjct: 79 VAAVVAHLGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQ 130
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 57.4 bits (139), Expect = 4e-11
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 17/109 (15%)
Query: 2 LFLHGFPESWYIWKHQMSEFS--HEYWTVAVD------------IKTNFRTIADRYFLVD 47
+ LHG P + + ++ + + D +F T VD
Sbjct: 58 IVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNSTHLPDAPADFWTPQL---FVD 114
Query: 48 SLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPA 96
LG R ++G+ +GG L + P +V I N P
Sbjct: 115 EFHAVCTALGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASM 163
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 54.4 bits (131), Expect = 3e-10
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 15/113 (13%)
Query: 2 LFLHGFPES-WYIWKHQMSEFSHEYWTVAVD-----------IKTNFRTIADRYFLVDSL 49
LHG P Y+ + + ++ + V D T+ LV+
Sbjct: 29 FVLHGGPGGNAYVLREGLQDYLEGFRVVYFDQRGSGRSLELPQDPRLFTVDA---LVEDT 85
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQEL 102
+ + LG R L+ FG + L ++P+ ++ + L
Sbjct: 86 LLLAEALGVERFGLLAHGFGAVVALEVLRRFPQAEGAILLAPWVNFPWLAARL 138
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 53.8 bits (130), Expect = 5e-10
Identities = 13/103 (12%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVD------------IKTNFRTIADRYFLVDS 48
++F GF +W F ++ + D ++T+
Sbjct: 23 IMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDG---YAQD 79
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
+ + L + +G G + + PEL +++
Sbjct: 80 VLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVG 122
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 53.9 bits (130), Expect = 6e-10
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 2 LFLHGFP---ESWYIWKHQMSEF-SHEYWTVAVDI----KTNFRTIADRY---FLVDSLK 50
+ LHG W + + F Y + D K++ + D ++K
Sbjct: 37 IMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSD-AVVMDEQRGLVNARAVK 95
Query: 51 VFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
+D L +R L+G GG+ +F +YP+ + K I++
Sbjct: 96 GLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 53.3 bits (128), Expect = 1e-09
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 13/124 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFS--HEYWTVAVDI----KTNFRTIAD--RYFLVDSLKVF 52
+L LHG S W + + VA+D+ +T + D + +
Sbjct: 41 LLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKDVGNV 100
Query: 53 LDHLGRN---RCILIGRDFGGSLVWSF-LDKYPELVVKSIIINVPHPAVFKQELKKMSQL 108
++ + + +LIG GG++ ++ +I+V L M
Sbjct: 101 VEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVV-EGTAMDALNSMQNF 159
Query: 109 IKTR 112
++ R
Sbjct: 160 LRGR 163
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 52.7 bits (127), Expect = 1e-09
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 21/114 (18%)
Query: 2 LFLHGFPESWYIWKHQMSEFS-HEYWTVAVDIKTNFR------------TIADRYFLVDS 48
LF HG+ +W++QM S Y T+A D R D
Sbjct: 23 LFSHGWLLDADMWEYQMEYLSSRGYRTIAFD----RRGFGRSDQPWTGNDYDT---FADD 75
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKY-PELVVKSIIINVPHPAVFKQE 101
+ ++HL L+G GG V ++ ++ V +++ P ++
Sbjct: 76 IAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKP 129
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 51.5 bits (124), Expect = 3e-09
Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI----KTNFRTIADRYFLVDSLKVFLDHL 56
+LF+HG + I+ ++ +Y + +D+ ++ + + Y +D++ F+ +
Sbjct: 19 LLFVHGSGCNLKIFGELE-KYLEDYNCILLDLKGHGESKGQCPSTVYGYIDNVANFITNS 77
Query: 57 G----RNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
+ LIG GG++V K V K + ++
Sbjct: 78 EVTKHQKNITLIGYSMGGAIVLGVALKKLPNVRKVVSLS 116
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 50.3 bits (121), Expect = 1e-08
Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 15/103 (14%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVD------------IKTNFRTIADRYFLVDS 48
+L HGF +W+ + E ++ + D + ++
Sbjct: 31 VLLAHGFGCDQNMWRFMLPELEKQFTVIVFDYVGSGQSDLESFSTKRYSSLEG---YAKD 87
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
++ L L +IG + + + +I
Sbjct: 88 VEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITMIC 130
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 49.3 bits (118), Expect = 2e-08
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 18/128 (14%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRYFLVDSLKVFL 53
++ +HG S + +++ + VD+ + + L L
Sbjct: 19 IVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPREPVMNYPA---MAQDLVDTL 75
Query: 54 DHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVP--------HPAVFKQELKKM 105
D L ++ IG GG V + P+ + K + I++ H +F
Sbjct: 76 DALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVS 135
Query: 106 SQLIKTRS 113
+TR
Sbjct: 136 ESDAQTRQ 143
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 48.0 bits (115), Expect = 5e-08
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFR------------TIADRYFLVDSL 49
+ + ++W Q+ + + + D R T+A L + +
Sbjct: 31 ALSNSIGTTLHMWDAQLPALTRHFRVLRYD----ARGHGASSVPPGPYTLAR---LGEDV 83
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
LD L R +G GG + P+ + + ++ N
Sbjct: 84 LELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLAN 125
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 48.0 bits (115), Expect = 6e-08
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTV-AVDI-------KTNFRTIADRY-FLVDSLKV 51
+L + Q+ + + +TV A D + AD +
Sbjct: 27 LLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVD 86
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
+ L + L+G GG KYP + K +I
Sbjct: 87 LMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWG 126
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 47.6 bits (114), Expect = 8e-08
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFR-------------TIADRYFLVDS 48
+ + G S W Q++ EY V D R +IA +
Sbjct: 19 VLISGLGGSGSYWLPQLAVLEQEYQVVCYD----QRGTGNNPDTLAEDYSIAQ---MAAE 71
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
L L G ++G G + YP V I +N
Sbjct: 72 LHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVN 114
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 47.4 bits (113), Expect = 1e-07
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDI----KTNFRTIADRY---FLVDSLKVFLD 54
L L G + ++ + + ++ + ++ +++ Y + L+ L
Sbjct: 33 LCLPGLTRNARDFEDLATRLAGDWRVLCPEMRGRGDSDYAKDPMTYQPMQYLQDLEALLA 92
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINV 92
G R + IG GG L P + +++ +V
Sbjct: 93 QEGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDV 130
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 47.2 bits (113), Expect = 1e-07
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 14/98 (14%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRYFLVDSLKVFL 53
++ LHG+ + +W+ E S + VD+ ++AD + + +
Sbjct: 16 LVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGFGALSLAD---MAE----AV 68
Query: 54 DHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
++ I +G GG + +PE V + +
Sbjct: 69 LQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVA 106
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 47.0 bits (112), Expect = 1e-07
Identities = 10/102 (9%), Positives = 25/102 (24%), Gaps = 12/102 (11%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDI-------KTNFRTIADRYFLVDSLKVFLD 54
+ + G + + + + D T + ++ L +D
Sbjct: 27 VLVGGALSTRAGGAPLAERLAPHFTVICYDRRGRGDSGDTPPYAVER---EIEDLAAIID 83
Query: 55 HLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPA 96
G + G G L + + + P+
Sbjct: 84 AAGG-AAFVFGMSSGAGLSLLAAASGLP-ITRLAVFEPPYAV 123
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 47.1 bits (112), Expect = 1e-07
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 2 LFLHGFPESWYIWKHQMSEF--SHEYWTVAVDIK-----TNFRTIADRYF---LVDSLKV 51
L + G S W + + + D + T A Y L
Sbjct: 27 LLVMGGNLSALGWPDEFARRLADGGLHVIRYDHRDTGRSTTRDFAAHPYGFGELAADAVA 86
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
LD G +R ++G G ++ + + + ++
Sbjct: 87 VLDGWGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLL 126
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 46.9 bits (112), Expect = 2e-07
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 19/102 (18%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFR------------TIADRYFLVDSL 49
+ + +W Q++ S + + D R TI L +
Sbjct: 30 VLSNSLGTDLSMWAPQVAALSKHFRVLRYD----TRGHGHSEAPKGPYTIEQ---LTGDV 82
Query: 50 KVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
+D L R G GG + ++ + + + + N
Sbjct: 83 LGLMDTLKIARANFCGLSMGGLTGVALAARHADRIERVALCN 124
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 46.2 bits (110), Expect = 3e-07
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 20/103 (19%)
Query: 2 LFLHGFPESWYIW-KHQMSEF-SHEYWTVAVDIKTNFR-----------TIADRYFLVDS 48
+F+ G + W HQ+ F + Y + D R T +V
Sbjct: 47 VFIAGRGGAGRTWHPHQVPAFLAAGYRCITFD----NRGIGATENAEGFTTQT---MVAD 99
Query: 49 LKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
++ L ++G G + + PELV ++++
Sbjct: 100 TAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMA 142
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 44.3 bits (104), Expect = 2e-06
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 10/104 (9%)
Query: 2 LFLHGF---------PESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADR-YFLVDSLKV 51
+ +HG E WY + + + + + + R L+ +K
Sbjct: 12 ILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQLLAYVKT 71
Query: 52 FLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHP 95
L G + L+G GG P+LV I PH
Sbjct: 72 VLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPHR 115
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 43.6 bits (102), Expect = 3e-06
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 1 MLFLHGFP---ESWY---IWKHQMSEFSHEYWTVAVDI------------KTNFRTIADR 42
+ H +S + M E + V VD + ++
Sbjct: 38 IFTYHDVGLNYKSCFQPLFRFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQ- 96
Query: 43 YFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPA 96
L D + L +L + I +G G ++ + +P+ V ++IN+ A
Sbjct: 97 --LADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNA 148
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 42.3 bits (100), Expect = 6e-06
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHE-YWTVAVDI----KTNFRTIADRYFLVDSLKVFLDHL 56
+ +HG S W+ +S + + +D+ R + V+ ++ +
Sbjct: 20 VLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHGTNPERHCDNFAEAVEMIEQTVQAH 79
Query: 57 G--RNRCILIGRDFGGSLVWSFLDKYPELVVKSIII 90
IL+G GG L+ L + +
Sbjct: 80 VTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGA 115
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 36.6 bits (85), Expect = 4e-04
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTV----AVDIKTNFRTIADRYFLVDSLKVFLDHL- 56
+ +HG + + + S + W+ AVD T + L F+ +
Sbjct: 7 VMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNN---GPVLSRFVQKVL 63
Query: 57 ---GRNRCILIGRDFGGSLVWSFLDKY--PELVVKSIIINVPH 94
G + ++ GG+ ++ V + + +
Sbjct: 64 DETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGAN 106
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged
active site, prolyl peptidase; 1.80A {Thermoplasma
acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A
1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A*
1xqx_A* 1xqy_A 1xqv_A
Length = 293
Score = 35.6 bits (83), Expect = 0.002
Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 20/123 (16%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTV------------AVDIKTNFRTIADRYFLVDS 48
++ +HG P + + + + + E TV D TI V+
Sbjct: 31 LMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPDQSKF--TIDY---GVEE 85
Query: 49 LKVFLDHL-GRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKKMSQ 107
+ L G + L+G +GG+L ++ KY + + I+ + +K+M++
Sbjct: 86 AEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGG--LSSVPLTVKEMNR 143
Query: 108 LIK 110
LI
Sbjct: 144 LID 146
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 35.5 bits (82), Expect = 0.002
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTN----FRTIADRY---FLVDSLKVFL 53
++FLHG ++ + W + +AVD+ Y ++L L
Sbjct: 84 VIFLHGGGQNAHTWDTVIVGLGEP--ALAVDL-PGHGHSAWREDGNYSPQLNSETLAPVL 140
Query: 54 DHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIII 90
L ++G GG P+LV + +++
Sbjct: 141 RELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLV 177
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 31.6 bits (71), Expect = 0.033
Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 24/115 (20%)
Query: 1 MLFLH--GFP-ESW-YIWKHQMSEFSHEYWTV----AVDI-------KTNFRTIADRYFL 45
++FLH G W Y ++ + + + +D N + +
Sbjct: 55 LVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSAVRNRGRLGTNFNW 114
Query: 46 VDS---LKVFLDHLGRN------RCILIGRDFGGSLVWSFLDKYPELVVKSIIIN 91
+D + + ++IG GG + P L I+I
Sbjct: 115 IDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIE 169
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.044
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 99 KQELKKMSQLIK 110
KQ LKK+ +K
Sbjct: 19 KQALKKLQASLK 30
Score = 27.2 bits (59), Expect = 1.1
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 23/45 (51%)
Query: 45 LVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSII 89
L SLK++ D D P L +K+ +
Sbjct: 25 LQASLKLYAD-----------------------DSAPALAIKATM 46
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 31.4 bits (71), Expect = 0.046
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 2 LFLHGF---PESWYIWKHQMSEFSHEYWTVAVDI---------KTNFRTIADRYFLVDSL 49
+ +HG WY K + H+ AVD+ T D + L
Sbjct: 14 VLVHGGCLGAWIWYKLKPLLESAGHK--VTAVDLSAAGINPRRLDEIHTFRD---YSEPL 68
Query: 50 KVFLDHLGRNR-CILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPA 96
+ + + +L+G FGG + ++ YPE + ++ ++ P
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPD 116
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 31.4 bits (71), Expect = 0.048
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 12/126 (9%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADRYFL--------VDSLKVFL 53
+ LH + S + V V + + T+ L +
Sbjct: 26 VLLHAYTGSPNDMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTKGNPDIWWAESSAAV 85
Query: 54 DHLGR--NRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN--VPHPAVFKQELKKMSQLI 109
H+ + + G GG L+ P + + + +P K ++ +
Sbjct: 86 AHMTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYM 145
Query: 110 KTRSGK 115
+GK
Sbjct: 146 NRLAGK 151
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 30.9 bits (70), Expect = 0.055
Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTV-AVDIK---TNFRTIADRYF--LVDSLKVFLDH 55
L +HGF + + + ++ +TV +K T++ + F V S++
Sbjct: 44 LLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGW 103
Query: 56 LGRNRC---ILIGRDFGGSLVWSFLDKYPE---LVVKSIIINVPHPAVFKQELKKMSQLI 109
L + RC + G GG+L + +P+ +V + +++P A ++ + +
Sbjct: 104 L-KQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGELPRYL 162
Query: 110 K 110
Sbjct: 163 D 163
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 30.4 bits (68), Expect = 0.11
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 28/111 (25%)
Query: 1 MLFLHGFPES------WYIWKHQMSEFS-------HEYWTVA-------------VDIKT 34
++FLHG E ++ H + +A D +
Sbjct: 177 VVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDREN 236
Query: 35 NFRTIADRYFLVDSLKVFLDHLG--RNRCILIGRDFGGSLVWSFLDKYPEL 83
F ++ ++ LD NR + G GG W+ + ++PEL
Sbjct: 237 PFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPEL 287
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 29.7 bits (67), Expect = 0.13
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 9/89 (10%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWTV-AVDI--------KTNFRTIADRYFLVDSLKVF 52
L LHGF + + + +T A + D + V + F
Sbjct: 20 LLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQDVMNGYEF 79
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYP 81
L + G + + G GG P
Sbjct: 80 LKNKGYEKIAVAGLSLGGVFSLKLGYTVP 108
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 29.6 bits (65), Expect = 0.19
Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 18/104 (17%)
Query: 5 HGFPESWYIWKHQMSEFSHE--YWTVAVDIKTNFRT----------IADRYF--LVDSLK 50
+G + ++ + + + +D +T++ A+ + + +K
Sbjct: 72 NGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWISDIK 131
Query: 51 VFLDHL----GRNRCILIGRDFGGSLVWSFLDKYPELVVKSIII 90
+ + G+ R L G FGG ++ Y + +K +I+
Sbjct: 132 EVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKNDIKGLIL 175
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20
PDB: 1y7i_A* 1y7h_A*
Length = 273
Score = 29.2 bits (65), Expect = 0.23
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 18/96 (18%)
Query: 2 LFLHGF---PESWYIWKHQMSEFSHEYWTVAVD---------IKTNFRTIADRYFLVDSL 49
+ +HG SWY K + H+ A+D RT+ D L
Sbjct: 8 VLVHGACHGGWSWYKLKPLLEAAGHK--VTALDLAASGTDLRKIEELRTLYD---YTLPL 62
Query: 50 KVFLDHLGRNR-CILIGRDFGGSLVWSFLDKYPELV 84
++ L + IL+G GG + ++KYP+ +
Sbjct: 63 MELMESLSADEKVILVGHSLGGMNLGLAMEKYPQKI 98
>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG,
P structure initiative; 1.80A {Listeria innocua}
Length = 254
Score = 29.0 bits (64), Expect = 0.27
Identities = 18/129 (13%), Positives = 35/129 (27%), Gaps = 35/129 (27%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYW------TVAVD-------------------IKTNF 36
+ +HG + + +EY T+ V+ IK F
Sbjct: 7 ILIHGSGGNASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGF 66
Query: 37 RTIADRYF-----LVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPEL-----VVK 86
L +++ G + +G GG + + + Y + K
Sbjct: 67 EQNQATPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRK 126
Query: 87 SIIINVPHP 95
+ I P
Sbjct: 127 LVAIGSPFN 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.39
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 17 QMSEFSHEYWTVAVDIKTNFRTIADRYFLVDSLK-VF----LDHLGRNRCILIGRDFGGS 71
+ E ++Y + + F D + D K + +DH+ ++ + G
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR--- 66
Query: 72 LVWSFLDKYPELVVKSIIINV 92
L W+ L K E +V+ + V
Sbjct: 67 LFWTLLSK-QEEMVQKFVEEV 86
Score = 26.7 bits (58), Expect = 1.8
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 11/60 (18%)
Query: 16 HQMSEFSHEYWTVAVDIKTNFRTIADRYFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWS 75
+Q+ + +IK +I L+ L C+L+ + V +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAE------LRRLLKSKPYENCLLVLLN-----VQN 255
Score = 25.6 bits (55), Expect = 4.7
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 20/90 (22%)
Query: 3 FLHGFPESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIAD----RYFLVDSLKVFLDHLGR 58
+ +W WKH + I+++ + + F D L VF
Sbjct: 336 SIRDGLATWDNWKHV------NCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFPPSAHI 387
Query: 59 NRCILIGRDFGGSLVWSFLDKY-PELVVKS 87
+L SL+W + K +VV
Sbjct: 388 PTILL-------SLIWFDVIKSDVMVVVNK 410
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 28.0 bits (62), Expect = 0.66
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 2 LFLHGF---PESWYIWKHQMSEFSHEYWTVAVDIK---TNFRTIADRYFLVDSLKVFLDH 55
+ +H WY K + H AV++ + R I + + K ++
Sbjct: 8 VLVHNAYHGAWIWYKLKPLLESAGHR--VTAVELAASGIDPRPIQAVETVDEYSKPLIET 65
Query: 56 LGR----NRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPA 96
L IL+G FGG + D +P + + +N P
Sbjct: 66 LKSLPENEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPD 110
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 27.5 bits (62), Expect = 1.0
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 64 IGRDFGGSLVWSFLDKYPELVVKSIIINVPHPA 96
+GR+ G D+Y + K + + + PA
Sbjct: 476 LGRELG----RYGFDEYSQ--FKGVHVTLGRPA 502
>1su8_A CODH 2, carbon monoxide dehydrogenase 2; nickel, cluster C,
oxidoreductase; HET: NFS; 1.10A {Carboxydothermus
hydrogenoformans} SCOP: e.26.1.2 PDB: 1su6_A* 1su7_A*
1suf_A* 2yiv_X* 3b51_X 3b52_X 3b53_X 3i39_X
Length = 636
Score = 27.3 bits (60), Expect = 1.3
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVD---IKTNFRTIADRYF 44
+L HG P + +M+ + + +D I+ + TIA+
Sbjct: 300 VLMRHGIPACTHSVSQEMAMITGALDAMILDYQCIQPSVATIAECTG 346
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 26.7 bits (58), Expect = 2.0
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKT------NFRTIADRYFL--VDSLKVF 52
++ + G ++ + H + T+A+ N I+ YF V +
Sbjct: 161 IIDIFGIGGGLLEYRASLLA-GHGFATLALAYYNFEDLPNNMDNISLEYFEEAVCYMLQ- 218
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELV 84
+ L+G G + S +
Sbjct: 219 HPQVKGPGIGLLGISLGADICLSMASFLKNVS 250
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 26.6 bits (58), Expect = 2.1
Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 20/122 (16%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHE-YWTVAVDI-------KTNFRTIADRYF-------- 44
+L LHG S + ++ + +A D + + RY
Sbjct: 27 LLALHGLQGSKEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVAL 86
Query: 45 -LVDSLKVFLDHLGRN---RCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQ 100
+ + + R L G G + L + I P Q
Sbjct: 87 GFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQ 146
Query: 101 EL 102
Sbjct: 147 GQ 148
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation,
xanthine, inhibition aspergillus flavus, peroxisome,
purine metabolism; HET: XAN 4PO; 1.00A {Aspergillus
flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A*
1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A*
1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 3p9o_A
2ic0_A* ...
Length = 296
Score = 26.0 bits (57), Expect = 3.4
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 26 WTVAV----DIKTNFRTIADRYFLV--DSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDK 79
TV V +I+T++ T AD +V DS+K + + + FG L F++K
Sbjct: 33 MTVCVLLEGEIETSY-TKADNSVIVATDSIKNTIYITAKQNPVTPPELFGSILGTHFIEK 91
Query: 80 YPELVVKSIII-----------NVPHPAVFKQE 101
Y + + I PHP F ++
Sbjct: 92 YNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRD 124
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 25.6 bits (56), Expect = 4.7
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 31/112 (27%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHE-----YWTVAVDIKTNFR---------TIADRYFLVD 47
LF+HG+ S +H + E + D R R +D
Sbjct: 32 LFVHGWGGS----QHHSLVRAREAVGLGCICMTFD----LRGHEGYASMRQSVTRAQNLD 83
Query: 48 SLKVFLDHLGR------NRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVP 93
+K D L + ++G +GG L + P V+ + + P
Sbjct: 84 DIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP---VEWLALRSP 132
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 1.80A {Saccharomyces cerevisiae}
Length = 158
Score = 25.1 bits (54), Expect = 4.8
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 22 SHEYWTVAVDIKTNFRTIADRYFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYP 81
+ + +T + + R D L C L+GR+ G SL D+
Sbjct: 18 YMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTE 77
Query: 82 ELVVKSIIINVPHPAVFKQ 100
+V I +P KQ
Sbjct: 78 IVVAD---IGIPEETSSKQ 93
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.12A {Shewanella oneidensis}
Length = 331
Score = 25.4 bits (55), Expect = 5.0
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 40 ADRY--FLVDSLKVFLDHLGR--NRCILIGRDFGGSLVWSFLDKYPEL 83
A R+ F+ L ++ R +L+G FGG + L L
Sbjct: 114 AGRFLDFIEKELAPSIESQLRTNGINVLVGHSFGGLVAMEALRTDRPL 161
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 25.4 bits (55), Expect = 5.1
Identities = 12/117 (10%), Positives = 27/117 (23%), Gaps = 18/117 (15%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHE-YWTVAVDIKTNFR-------------TIADRYFLVD 47
L GF + S + D T+ +
Sbjct: 39 LIASGFARRMDHFAGLAEYLSTNGFHVFRYD----SLHHVGLSSGSIDEFTMTTGKNSLC 94
Query: 48 SLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINVPHPAVFKQELKK 104
++ +L G LI + + + + + + V ++ L
Sbjct: 95 TVYHWLQTKGTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRDTLEKALGF 151
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 25.2 bits (55), Expect = 5.2
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 66 RDFGGSLVWSFLDKYPELVVKSIIINVPH--PAVFK 99
+ + + YPE + K II+ P +FK
Sbjct: 203 LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFK 238
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 25.2 bits (56), Expect = 5.4
Identities = 8/29 (27%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
Query: 86 KSIIINVPH-P--AVF-KQELKKMSQLIK 110
+++++N P P VF ++EL+ +++L +
Sbjct: 154 RALLLNTPMNPTGLVFGERELEAIARLAR 182
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 25.4 bits (56), Expect = 5.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 86 KSIIINVPH-P--AVF-KQELKKMSQLIK 110
K IIIN PH P V + EL+ ++ L K
Sbjct: 184 KMIIINTPHNPLGKVMDRAELEVVANLCK 212
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 25.3 bits (56), Expect = 5.9
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 86 KSIIINVPH-P--AVF-KQELKKMSQLIK 110
K+II+N PH P V+ +QEL+ ++ L
Sbjct: 169 KAIILNTPHNPLGKVYTRQELQVIADLCV 197
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 25.4 bits (56), Expect = 6.2
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 86 KSIIINVPH-P--AVF-KQELKKMSQLIK 110
K++IIN PH P VF ++EL + +
Sbjct: 203 KAVIINTPHNPIGKVFTREELTTLGNICV 231
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 25.1 bits (55), Expect = 6.4
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 80 YPELVVKSIIINVPH--PAVFK 99
YPE + K IIN P F+
Sbjct: 202 YPERMGKFYIINAPFGFSTAFR 223
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 25.0 bits (55), Expect = 6.6
Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
Query: 86 KSIIINVPH-P--AVF-KQELKKMSQLIK 110
K++++N P+ P VF ++EL+ ++ L +
Sbjct: 176 KALVLNTPNNPLGKVFSREELELVASLCQ 204
>3eck_A Protein (homoprotocatechuate 2,3-dioxygenase); oxidoreductase,
extradiol, FEII, crystal packing; HET: XXG; 1.60A
{Brevibacterium fuscum} SCOP: d.32.1.3 d.32.1.3 PDB:
3ecj_A* 3ojn_A* 1q0o_A 1q0c_A 2iga_A* 2ig9_A 3ojj_A*
3bza_A* 3ojk_A* 3ojt_A*
Length = 365
Score = 25.0 bits (54), Expect = 6.8
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 8 PESWYIWKHQMSEFSHEYWTVAVDIKTNFRTIADR 42
+ W + + + + +D+ N + I R
Sbjct: 290 NQRRDWWGNPVVPSWYTEASKVLDLDGNVQEIILR 324
>2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST
initiative, midwest center for structural genomics,
MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579}
Length = 275
Score = 24.9 bits (54), Expect = 7.0
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 40 ADRY--FLVDSLKVFLDH---LGRNRCILIGRDFGGSLVWSFLDKYPEL----VVKSIII 90
A + F+ + LK ++ + + + L G GG L + S I
Sbjct: 128 AHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLNAFQNYFISSPSI 187
Query: 91 NVPHPAVFKQELKKMSQLIKTR 112
+ +V ++E + +L +
Sbjct: 188 WWNNKSVLEKEENLIIELNNAK 209
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 24.8 bits (55), Expect = 7.2
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 86 KSIIINVPH-P--AVF-KQELKKMSQLIK 110
+ +I+N PH P V+ + + + Q I
Sbjct: 165 RLVILNTPHNPSATVWQQADFAALWQAIA 193
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 24.9 bits (55), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 86 KSIIINVPH-P--AVF-KQELKKMSQLIK 110
+++IIN PH P AV EL ++++
Sbjct: 162 RALIINSPHNPTGAVLSATELAAIAEIAV 190
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 24.9 bits (54), Expect = 7.6
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 64 IGRDFGGSLVWSFLDKYPELVVKSIIINVP 93
+ G + F + YPE + + ++ P
Sbjct: 166 PAVEAYGEFLCMFEENYPETLKRLFVVKAP 195
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein
structure in midwest center for structural genomics,
MCSG; 2.01A {Staphylococcus epidermidis}
Length = 249
Score = 24.8 bits (53), Expect = 9.3
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 2 LFLHGFPESWYIWKHQMSEFSHEYWT 27
LFLHG+ S + + ++ T
Sbjct: 10 LFLHGYGGSERSETFMVKQALNKNVT 35
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 24.4 bits (53), Expect = 9.6
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 46 VDSLKVFLDHL----GRNRCILIGRDFGGSLVWSFLDKYPELVVKSIII 90
++ L+++ L+G GG + YP+L+ K +++
Sbjct: 102 IEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLL 150
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 24.8 bits (53), Expect = 10.0
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 1 MLFLHGFPESWYIWKHQMSEFSHEYWTVAVDIKT------NFRTIADRYFL--VDSLKVF 52
++ + G ++ + + +A+ T+ YF ++ L
Sbjct: 177 IVDMFGTGGGLLEYRASLLA-GKGFAVMALAYYNYEDLPKTMETLHLEYFEEAMNYLLS- 234
Query: 53 LDHLGRNRCILIGRDFGGSLVWSFLDKYPEL 83
+ L+G GG L S +
Sbjct: 235 HPEVKGPGVGLLGISKGGELCLSMASFLKGI 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.457
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,830,193
Number of extensions: 98144
Number of successful extensions: 422
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 113
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.7 bits)