BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13242
         (76 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7TQK1|INT7_MOUSE Integrator complex subunit 7 OS=Mus musculus GN=Ints7 PE=1 SV=1
          Length = 966

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 56/64 (87%)

Query: 13 DSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADV 72
          D+  GE E DANSAL EL+KGLRS K+GEQCEA+VRFP LF+KYPFPILINS+FLKLADV
Sbjct: 12 DAGYGEQELDANSALMELDKGLRSGKLGEQCEAVVRFPRLFQKYPFPILINSAFLKLADV 71

Query: 73 FRGG 76
          FR G
Sbjct: 72 FRVG 75


>sp|Q9NVH2|INT7_HUMAN Integrator complex subunit 7 OS=Homo sapiens GN=INTS7 PE=1 SV=1
          Length = 962

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 56/64 (87%)

Query: 13 DSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADV 72
          D+  GE E DANSAL EL+KGLRS K+GEQCEA+VRFP LF+KYPFPILINS+FLKLADV
Sbjct: 12 DAGYGEQELDANSALMELDKGLRSGKLGEQCEAVVRFPRLFQKYPFPILINSAFLKLADV 71

Query: 73 FRGG 76
          FR G
Sbjct: 72 FRVG 75


>sp|Q1RMS6|INT7_BOVIN Integrator complex subunit 7 OS=Bos taurus GN=INTS7 PE=2 SV=1
          Length = 962

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 56/64 (87%)

Query: 13 DSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADV 72
          D+  GE E DANSAL EL+KGLRS K+GEQCEA+VRFP LF+KYPFPILINS+FLKLADV
Sbjct: 12 DAGYGEQELDANSALMELDKGLRSGKLGEQCEAVVRFPRLFQKYPFPILINSAFLKLADV 71

Query: 73 FRGG 76
          FR G
Sbjct: 72 FRVG 75


>sp|Q5ZL91|INT7_CHICK Integrator complex subunit 7 OS=Gallus gallus GN=INTS7 PE=2 SV=1
          Length = 961

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 56/64 (87%)

Query: 13 DSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADV 72
          D+  GE E DANSAL EL+KGLRS K+GEQCEA+VRFP LF+KYPFPILINS+FLKLADV
Sbjct: 11 DAGYGEQELDANSALMELDKGLRSGKLGEQCEAVVRFPRLFQKYPFPILINSAFLKLADV 70

Query: 73 FRGG 76
          FR G
Sbjct: 71 FRVG 74


>sp|Q8JGR7|INT7_DANRE Integrator complex subunit 7 OS=Danio rerio GN=ints7 PE=2 SV=1
          Length = 964

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 1  MTLLGSRLSITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPI 60
          M+L  +R S   +++ GE E DANSAL EL+KGLRS K+GEQCEA+V FP LF+KYPFPI
Sbjct: 1  MSLSAAR-SFLSEAAYGEQELDANSALMELDKGLRSCKLGEQCEAVVLFPKLFQKYPFPI 59

Query: 61 LINSSFLKLADVFRGG 76
          LINS+FLKLAD+FR G
Sbjct: 60 LINSAFLKLADIFRLG 75


>sp|Q54PL2|INT7_DICDI Integrator complex subunit 7 homolog OS=Dictyostelium discoideum
           GN=ints7 PE=3 SV=1
          Length = 1024

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 44/66 (66%)

Query: 9   SITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLK 68
           +I +  S  E++++  + L E+ KG+RS  +GEQ E+I+ F  L + +P P+++NS   +
Sbjct: 110 NIVVIESNKEDDKECGTILMEINKGIRSGNLGEQIESILFFSHLIKFHPSPLIVNSVITR 169

Query: 69  LADVFR 74
           L+D+FR
Sbjct: 170 LSDIFR 175


>sp|A3Q8S8|RECF_SHELP DNA replication and repair protein RecF OS=Shewanella loihica
           (strain ATCC BAA-1088 / PV-4) GN=recF PE=3 SV=1
          Length = 360

 Score = 30.0 bits (66), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 4   LGSRLSITLDSSLGENEQDANSALAELEKGLRSSKIGEQ------------CEAIVRFPT 51
           +G      L   + +N+QD  +  A+LE+G + +KIG +             E + R  T
Sbjct: 48  MGRSFRSHLSQRVIQNDQDKLTLFAQLEQGEQETKIGLRRYRSGETEVKMNGEKVKRLST 107

Query: 52  LFEKYPFPILINSSF 66
           L E  P  ++   SF
Sbjct: 108 LAETLPIQVITPESF 122


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.136    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,796,067
Number of Sequences: 539616
Number of extensions: 741267
Number of successful extensions: 2137
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2131
Number of HSP's gapped (non-prelim): 9
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)