Query psy13242
Match_columns 76
No_of_seqs 41 out of 43
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 23:47:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1988|consensus 99.9 1.9E-23 4.1E-28 178.3 4.4 72 5-76 4-75 (970)
2 PF10410 DnaB_bind: DnaB-helic 75.1 12 0.00027 20.9 5.3 46 29-74 8-53 (59)
3 PF13174 TPR_6: Tetratricopept 50.1 14 0.00031 17.6 1.6 20 39-58 13-32 (33)
4 PF13525 YfiO: Outer membrane 47.2 70 0.0015 22.1 5.2 56 18-73 124-188 (203)
5 PF13525 YfiO: Outer membrane 42.0 22 0.00048 24.6 2.1 42 32-73 11-52 (203)
6 PF13318 DUF4089: Protein of u 37.9 12 0.00025 22.2 0.2 30 29-59 12-41 (50)
7 PF13512 TPR_18: Tetratricopep 36.2 38 0.00083 23.9 2.6 45 26-73 13-57 (142)
8 PF09976 TPR_21: Tetratricopep 36.0 65 0.0014 20.7 3.5 34 40-73 62-95 (145)
9 PF14852 Fis1_TPR_N: Fis1 N-te 35.6 28 0.00062 19.2 1.5 24 34-57 12-35 (35)
10 PF08620 RPAP1_C: RPAP1-like, 33.4 26 0.00057 22.4 1.3 40 17-56 31-70 (73)
11 PF08451 A_deaminase_N: Adenos 33.0 34 0.00074 22.4 1.8 19 13-31 42-60 (96)
12 PF11239 DUF3040: Protein of u 32.6 32 0.0007 21.4 1.5 21 16-39 3-23 (82)
13 PF13784 Fic_N: Fic/DOC family 31.4 94 0.002 19.7 3.6 32 39-70 5-37 (84)
14 PRK10866 outer membrane biogen 29.3 64 0.0014 23.5 2.9 43 31-73 37-79 (243)
15 PF09968 DUF2202: Uncharacteri 27.1 65 0.0014 23.4 2.5 16 49-64 19-34 (162)
16 COG5065 PHO88 Protein involved 26.8 63 0.0014 24.4 2.5 39 25-66 88-126 (185)
17 KOG4554|consensus 26.8 63 0.0014 24.4 2.5 39 25-66 88-126 (185)
18 PF12231 Rif1_N: Rap1-interact 25.6 1.1E+02 0.0025 23.6 3.8 38 17-54 266-303 (372)
19 PRK10866 outer membrane biogen 25.5 85 0.0018 22.8 2.9 55 20-74 160-223 (243)
20 PF09976 TPR_21: Tetratricopep 25.1 1.9E+02 0.0042 18.5 4.4 51 21-74 9-59 (145)
21 PRK07535 methyltetrahydrofolat 24.8 1.1E+02 0.0024 22.9 3.4 35 37-71 168-218 (261)
22 KOG1894|consensus 24.7 52 0.0011 27.4 1.8 38 19-56 314-351 (412)
23 PF04289 DUF447: Protein of un 24.0 46 0.001 23.4 1.3 14 16-29 164-177 (177)
24 PF12348 CLASP_N: CLASP N term 23.1 70 0.0015 21.8 2.0 36 21-56 3-38 (228)
25 PF11903 DUF3423: Protein of u 22.8 89 0.0019 19.8 2.3 38 33-70 19-58 (72)
26 PF10579 Rapsyn_N: Rapsyn N-te 22.3 1.6E+02 0.0035 19.3 3.5 31 29-59 9-39 (80)
27 KOG3624|consensus 21.8 1.1E+02 0.0024 25.3 3.2 27 48-74 312-338 (687)
28 PF13549 ATP-grasp_5: ATP-gras 21.2 1.2E+02 0.0026 22.3 3.0 40 19-58 150-197 (222)
29 PF04001 Vhr1: Transcription f 20.7 2.1E+02 0.0045 19.6 3.9 25 30-54 35-60 (95)
30 PF06153 DUF970: Protein of un 20.6 58 0.0013 22.2 1.2 21 19-39 9-30 (109)
No 1
>KOG1988|consensus
Probab=99.88 E-value=1.9e-23 Score=178.31 Aligned_cols=72 Identities=54% Similarity=0.751 Sum_probs=69.3
Q ss_pred cccccccccCccCccHHHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhhhcC
Q psy13242 5 GSRLSITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADVFRGG 76 (76)
Q Consensus 5 ~~~~~~~~~~~~~e~~~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~Fr~G 76 (76)
+.+.+++++.++.|+|-|+|..+|||||||||++.|+|||++++|+|+|++||||+||||++|||||+|++|
T Consensus 4 ~~~~~~~~~~~~~~~e~s~~a~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~G 75 (970)
T KOG1988|consen 4 CAMESSIKLEKSLESENSVNAVLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVG 75 (970)
T ss_pred chhhhHHhhhhccccccchhHHHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccC
Confidence 345689999999999999999999999999999999999999999999999999999999999999999988
No 2
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=75.10 E-value=12 Score=20.89 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=37.5
Q ss_pred HHHhhhcCCchHHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhhh
Q psy13242 29 ELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADVFR 74 (76)
Q Consensus 29 eLdKGLRS~~~geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~Fr 74 (76)
.+-++.--.++.++.+++-+..+++.+-|-|+.-+..+=+||+.+.
T Consensus 8 ~l~~~~dl~~~egk~~~~~~~~~~i~~i~~~i~r~~y~~~la~~~~ 53 (59)
T PF10410_consen 8 RLSKGYDLDTPEGKAEAVREAAPLIAQIPDPIERELYIRELAERLG 53 (59)
T ss_dssp HHGGGS-TTSHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHCT
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 3445666677999999999999999999999999999999998764
No 3
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=50.07 E-value=14 Score=17.58 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=16.7
Q ss_pred hHHHHHHHhhhhhhhhhcCc
Q psy13242 39 IGEQCEAIVRFPTLFEKYPF 58 (76)
Q Consensus 39 ~geQ~eaI~~f~~l~e~~P~ 58 (76)
.|+-=+|+..|.+++++||-
T Consensus 13 ~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 13 LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HCHHHHHHHHHHHHHHHSTT
T ss_pred ccCHHHHHHHHHHHHHHCcC
Confidence 46777889999999999994
No 4
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=47.16 E-value=70 Score=22.11 Aligned_cols=56 Identities=30% Similarity=0.487 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHHHhhhcCCc---------hHHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhh
Q psy13242 18 ENEQDANSALAELEKGLRSSK---------IGEQCEAIVRFPTLFEKYPFPILINSSFLKLADVF 73 (76)
Q Consensus 18 e~~~dA~~~lieLdKGLRS~~---------~geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~F 73 (76)
+--.+|...+.+|...|-... .|.-..||.++..+++.||-....--++.+|+++.
T Consensus 124 ~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 124 EYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 344678888888876654433 36788999999999999999999888888888764
No 5
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=41.96 E-value=22 Score=24.64 Aligned_cols=42 Identities=31% Similarity=0.421 Sum_probs=29.1
Q ss_pred hhhcCCchHHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhh
Q psy13242 32 KGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADVF 73 (76)
Q Consensus 32 KGLRS~~~geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~F 73 (76)
+|...=.-|+=-+||..|..+..+||..-++-.+.+.+|+++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~ 52 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAY 52 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 333333345666788888899999998877777888888875
No 6
>PF13318 DUF4089: Protein of unknown function (DUF4089)
Probab=37.88 E-value=12 Score=22.24 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=24.3
Q ss_pred HHHhhhcCCchHHHHHHHhhhhhhhhhcCch
Q psy13242 29 ELEKGLRSSKIGEQCEAIVRFPTLFEKYPFP 59 (76)
Q Consensus 29 eLdKGLRS~~~geQ~eaI~~f~~l~e~~P~P 59 (76)
+|+.--|.+ +-.|.+-|..+++++..+|.|
T Consensus 12 ~l~~~~r~~-V~~n~~ri~~mA~~v~~fpL~ 41 (50)
T PF13318_consen 12 PLDEEWRPG-VVANFERIAAMAQLVMEFPLP 41 (50)
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHcCCCC
Confidence 344555665 778999999999999999987
No 7
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=36.18 E-value=38 Score=23.91 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=33.8
Q ss_pred HHHHHHhhhcCCchHHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhh
Q psy13242 26 ALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADVF 73 (76)
Q Consensus 26 ~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~F 73 (76)
+--+=+..|++++ =-+||-.|..|...||++-..--+-|.|+++.
T Consensus 13 ly~~a~~~l~~~~---Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yay 57 (142)
T PF13512_consen 13 LYQEAQEALQKGN---YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAY 57 (142)
T ss_pred HHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHH
Confidence 3333344555554 45678899999999999999999999999874
No 8
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.00 E-value=65 Score=20.75 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhh
Q psy13242 40 GEQCEAIVRFPTLFEKYPFPILINSSFLKLADVF 73 (76)
Q Consensus 40 geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~F 73 (76)
|+-=+|+..|-..++..|-|.+.+.+.+|||.+.
T Consensus 62 g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 62 GDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 4444677777888888888888888888888764
No 9
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=35.63 E-value=28 Score=19.18 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=19.0
Q ss_pred hcCCchHHHHHHHhhhhhhhhhcC
Q psy13242 34 LRSSKIGEQCEAIVRFPTLFEKYP 57 (76)
Q Consensus 34 LRS~~~geQ~eaI~~f~~l~e~~P 57 (76)
+||.+..+|-+.|.=+..+++..|
T Consensus 12 v~S~~~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 12 VKSNNREDQQEGIALLEELYRDEP 35 (35)
T ss_dssp HHSSSHHHHHHHHHHHHHHCCCS-
T ss_pred hcCCCHHHHHHHHHHHHHHHhccC
Confidence 588888999999988888877655
No 10
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=33.40 E-value=26 Score=22.35 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=33.7
Q ss_pred CccHHHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhhhc
Q psy13242 17 GENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKY 56 (76)
Q Consensus 17 ~e~~~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~ 56 (76)
+|+...|-..+-||=-=.||+.+++.|-||--+++.+.+.
T Consensus 31 g~~p~~aGYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 31 GEDPEAAGYTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CCCCCcCCcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 3444667888889988899999999999999999988764
No 11
>PF08451 A_deaminase_N: Adenosine/AMP deaminase N-terminal; InterPro: IPR013659 This domain is found to the N terminus of the Adenosine/AMP deaminase domain (IPR001365 from INTERPRO) in metazoan proteins such as the Cat eye syndrome critical region protein 1 and its homologues. ; GO: 0005615 extracellular space; PDB: 3LGG_B 3LGD_B.
Probab=33.00 E-value=34 Score=22.40 Aligned_cols=19 Identities=42% Similarity=0.452 Sum_probs=13.0
Q ss_pred cCccCccHHHHHHHHHHHH
Q psy13242 13 DSSLGENEQDANSALAELE 31 (76)
Q Consensus 13 ~~~~~e~~~dA~~~lieLd 31 (76)
+-.|++.|+.||..+|.+-
T Consensus 42 ~l~Lt~~E~~aN~~lm~lK 60 (96)
T PF08451_consen 42 DLVLTPKEQKANEILMALK 60 (96)
T ss_dssp T----HHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHH
Confidence 5568999999999999754
No 12
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=32.60 E-value=32 Score=21.36 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=17.2
Q ss_pred cCccHHHHHHHHHHHHhhhcCCch
Q psy13242 16 LGENEQDANSALAELEKGLRSSKI 39 (76)
Q Consensus 16 ~~e~~~dA~~~lieLdKGLRS~~~ 39 (76)
++|+||. .|-|+|..|+...+
T Consensus 3 LSe~E~r---~L~eiEr~L~~~DP 23 (82)
T PF11239_consen 3 LSEHEQR---RLEEIERQLRADDP 23 (82)
T ss_pred CCHHHHH---HHHHHHHHHHhcCc
Confidence 5777775 78999999998866
No 13
>PF13784 Fic_N: Fic/DOC family N-terminal; PDB: 3EQX_A.
Probab=31.40 E-value=94 Score=19.69 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhhhhhhhcCch-HHHHHHHHHHH
Q psy13242 39 IGEQCEAIVRFPTLFEKYPFP-ILINSSFLKLA 70 (76)
Q Consensus 39 ~geQ~eaI~~f~~l~e~~P~P-ifiNS~lLkLA 70 (76)
+++.-.++.++....+.-|-| +|+++.++|=|
T Consensus 5 l~~A~~aLg~L~g~~~~lpn~~~li~~l~~~EA 37 (84)
T PF13784_consen 5 LSKANRALGRLDGMLRLLPNPELLIRPLVRQEA 37 (84)
T ss_dssp HHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHH
Confidence 445556777777778888877 88888877643
No 14
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=29.32 E-value=64 Score=23.46 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=32.4
Q ss_pred HhhhcCCchHHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhh
Q psy13242 31 EKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADVF 73 (76)
Q Consensus 31 dKGLRS~~~geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~F 73 (76)
++|.+.-.-|+==+||..|..+++.||.+-.+-.+.+.||++.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ay 79 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAY 79 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 3444444344455889999999999999988888888888864
No 15
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=27.06 E-value=65 Score=23.37 Aligned_cols=16 Identities=44% Similarity=0.802 Sum_probs=7.7
Q ss_pred hhhhhhhcCchHHHHH
Q psy13242 49 FPTLFEKYPFPILINS 64 (76)
Q Consensus 49 f~~l~e~~P~PifiNS 64 (76)
+-.+.++|+.|+|.|.
T Consensus 19 Y~~l~~~~g~~~F~NI 34 (162)
T PF09968_consen 19 YLTLYEKWGLPIFNNI 34 (162)
T ss_dssp HHHHHHHH--HHHHHH
T ss_pred HHHHHHHcCChHhHHH
Confidence 4445556666666554
No 16
>COG5065 PHO88 Protein involved in inorganic phosphate transport [Inorganic ion transport and metabolism]
Probab=26.78 E-value=63 Score=24.39 Aligned_cols=39 Identities=41% Similarity=0.571 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcCCchHHHHHHHhhhhhhhhhcCchHHHHHHH
Q psy13242 25 SALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSF 66 (76)
Q Consensus 25 ~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~P~PifiNS~l 66 (76)
.-+-||+|..||.-.|- ||..|-||-=+|--|+|+-|+.
T Consensus 88 YD~seL~ka~rs~~~~~---aim~fmHlym~yaqPLf~QSi~ 126 (185)
T COG5065 88 YDLSELTKASRSAVIGF---AIMSFMHLYMKYAQPLFVQSIS 126 (185)
T ss_pred ccHHHHHHHHHHHHHHH---HHHHHHHHHHhccchHHHHHHH
Confidence 34678999999987664 6778889999999999999874
No 17
>KOG4554|consensus
Probab=26.78 E-value=63 Score=24.39 Aligned_cols=39 Identities=41% Similarity=0.571 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcCCchHHHHHHHhhhhhhhhhcCchHHHHHHH
Q psy13242 25 SALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSF 66 (76)
Q Consensus 25 ~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~P~PifiNS~l 66 (76)
.-+-||+|..||.-.|- ||..|-||-=+|--|+|+-|+.
T Consensus 88 YD~seL~ka~rs~~~~~---aim~fmHlym~yaqPLf~QSi~ 126 (185)
T KOG4554|consen 88 YDLSELTKASRSAVIGF---AIMSFMHLYMKYAQPLFVQSIS 126 (185)
T ss_pred ccHHHHHHHHHHHHHHH---HHHHHHHHHHhccchHHHHHHH
Confidence 34678999999987664 6778889999999999999874
No 18
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=25.60 E-value=1.1e+02 Score=23.59 Aligned_cols=38 Identities=21% Similarity=0.091 Sum_probs=34.5
Q ss_pred CccHHHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhh
Q psy13242 17 GENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFE 54 (76)
Q Consensus 17 ~e~~~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e 54 (76)
-+.+.--|+||--.+++++++++.-+++|+..-.+++-
T Consensus 266 ~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 266 LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999888876
No 19
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=25.51 E-value=85 Score=22.82 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhhcCC---------chHHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhhh
Q psy13242 20 EQDANSALAELEKGLRSS---------KIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADVFR 74 (76)
Q Consensus 20 ~~dA~~~lieLdKGLRS~---------~~geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~Fr 74 (76)
-.||...+.+|..-|=.. +.|.-..||.|+..+++.||---..--++..+.+++.
T Consensus 160 a~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~ 223 (243)
T PRK10866 160 TTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYR 223 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 467777777765332111 1256788999999999999998888888888887763
No 20
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.09 E-value=1.9e+02 Score=18.49 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhhh
Q psy13242 21 QDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADVFR 74 (76)
Q Consensus 21 ~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~Fr 74 (76)
++|......+...+..++.. ++-..+..+..+||--.....+.|.+|+++.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~---~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~ 59 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPA---KAEAAAEQLAKDYPSSPYAALAALQLAKAAY 59 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 34444445555555444333 3333578889999888777888888887653
No 21
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=24.82 E-value=1.1e+02 Score=22.90 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=21.7
Q ss_pred CchHHHHHHHhhhhhhhhhcC-ch---------------HHHHHHHHHHHH
Q psy13242 37 SKIGEQCEAIVRFPTLFEKYP-FP---------------ILINSSFLKLAD 71 (76)
Q Consensus 37 ~~~geQ~eaI~~f~~l~e~~P-~P---------------ifiNS~lLkLAD 71 (76)
+......+.+-.+..+=+.+| .| -.+|+.||-+|-
T Consensus 168 ~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~ 218 (261)
T PRK07535 168 AAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAM 218 (261)
T ss_pred CChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHH
Confidence 333445555555555555564 55 789999988763
No 22
>KOG1894|consensus
Probab=24.70 E-value=52 Score=27.44 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhhhc
Q psy13242 19 NEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKY 56 (76)
Q Consensus 19 ~~~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~ 56 (76)
.-.-|...+-||++=+||+-+.+.|=||...++++-+.
T Consensus 314 ~p~lagyt~vel~hlaRs~fpsqrcIaiqt~gri~y~l 351 (412)
T KOG1894|consen 314 SPELAGYTIVELEHLARSTFPSQRCIAIQTLGRILYKL 351 (412)
T ss_pred CHHHHHHHHHHHHHHHHhhCchhhhhHHhhhcceeecc
Confidence 33678899999999999999999999999999987665
No 23
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=23.98 E-value=46 Score=23.42 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=10.6
Q ss_pred cCccHHHHHHHHHH
Q psy13242 16 LGENEQDANSALAE 29 (76)
Q Consensus 16 ~~e~~~dA~~~lie 29 (76)
.++.|++|++||+|
T Consensus 164 gg~~e~ea~~~l~e 177 (177)
T PF04289_consen 164 GGPREREAMELLME 177 (177)
T ss_dssp --HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC
Confidence 46778999999987
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=23.12 E-value=70 Score=21.83 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhhhc
Q psy13242 21 QDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKY 56 (76)
Q Consensus 21 ~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~ 56 (76)
++..++.-.|++.-.+.+-.++++++.++-+++..+
T Consensus 3 ~~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~ 38 (228)
T PF12348_consen 3 YEFEEILAALEKKESESDWEERVEALQKLRSLIKGN 38 (228)
T ss_dssp ---GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcC
Confidence 344445555666677778888888888888888877
No 25
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=22.81 E-value=89 Score=19.82 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=28.0
Q ss_pred hhcCCchHHHHHHHhhhhhhhhhcC-ch-HHHHHHHHHHH
Q psy13242 33 GLRSSKIGEQCEAIVRFPTLFEKYP-FP-ILINSSFLKLA 70 (76)
Q Consensus 33 GLRS~~~geQ~eaI~~f~~l~e~~P-~P-ifiNS~lLkLA 70 (76)
..-+..+..|+|=-.+++++.|.+| +| =+|--+++..+
T Consensus 19 ~~~~RSi~~QiE~WariGr~~E~np~l~~~~I~~~l~~~~ 58 (72)
T PF11903_consen 19 AAESRSINGQIEHWARIGRAAEDNPDLSYSFIEEMLLAAE 58 (72)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhh
Confidence 3456668999999999999999998 33 25555555544
No 26
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=22.28 E-value=1.6e+02 Score=19.30 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=27.4
Q ss_pred HHHhhhcCCchHHHHHHHhhhhhhhhhcCch
Q psy13242 29 ELEKGLRSSKIGEQCEAIVRFPTLFEKYPFP 59 (76)
Q Consensus 29 eLdKGLRS~~~geQ~eaI~~f~~l~e~~P~P 59 (76)
.+|+|||=-+.-++=+||....+.+++.+-|
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~ 39 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDR 39 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCCh
Confidence 4789999888889999999999999999776
No 27
>KOG3624|consensus
Probab=21.83 E-value=1.1e+02 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.4
Q ss_pred hhhhhhhhcCchHHHHHHHHHHHHhhh
Q psy13242 48 RFPTLFEKYPFPILINSSFLKLADVFR 74 (76)
Q Consensus 48 ~f~~l~e~~P~PifiNS~lLkLAD~Fr 74 (76)
.+.+++++.|..++.|-++.|+.+.+.
T Consensus 312 ~l~~ii~~t~~~~laNYl~~~~~~~~~ 338 (687)
T KOG3624|consen 312 NLSAIIQSTPKRTLANYLIWRLLDDLL 338 (687)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999998765
No 28
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=21.22 E-value=1.2e+02 Score=22.31 Aligned_cols=40 Identities=28% Similarity=0.489 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHH-----hhhcCC---chHHHHHHHhhhhhhhhhcCc
Q psy13242 19 NEQDANSALAELE-----KGLRSS---KIGEQCEAIVRFPTLFEKYPF 58 (76)
Q Consensus 19 ~~~dA~~~lieLd-----KGLRS~---~~geQ~eaI~~f~~l~e~~P~ 58 (76)
++.||.+.+-++- +|.|+. +...=+++|++++++...+|.
T Consensus 150 ~~~~a~~mi~~l~~~~lL~G~RG~p~~d~~al~~~l~~ls~l~~~~p~ 197 (222)
T PF13549_consen 150 SEADAREMIRELRAYPLLRGYRGRPPADLDALADLLVRLSQLAADLPE 197 (222)
T ss_dssp -HHHHHHHHHTSTTHHHHH-------B-HHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhHHhhcccCCCCCcCHHHHHHHHHHHHHHHHhCCC
Confidence 4567777776643 566655 556778999999999999884
No 29
>PF04001 Vhr1: Transcription factor Vhr1; InterPro: IPR007147 This is a family of proteins of unknown function found in yeast.
Probab=20.73 E-value=2.1e+02 Score=19.63 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.1
Q ss_pred HHh-hhcCCchHHHHHHHhhhhhhhh
Q psy13242 30 LEK-GLRSSKIGEQCEAIVRFPTLFE 54 (76)
Q Consensus 30 LdK-GLRS~~~geQ~eaI~~f~~l~e 54 (76)
+|| +|-+.+..||=.-|-+.+.+++
T Consensus 35 Id~~~Ls~~KASEQd~~I~~iA~iLR 60 (95)
T PF04001_consen 35 IDKFDLSSRKASEQDDNIRQIAEILR 60 (95)
T ss_pred HHHcCcccchhhhhHHHHHHHHHHHH
Confidence 466 8999999999999999999887
No 30
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=20.57 E-value=58 Score=22.23 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHHh-hhcCCch
Q psy13242 19 NEQDANSALAELEK-GLRSSKI 39 (76)
Q Consensus 19 ~~~dA~~~lieLdK-GLRS~~~ 39 (76)
+++||+...-+|-| |+|.+++
T Consensus 9 qd~Da~~l~~~L~~~g~~~TkL 30 (109)
T PF06153_consen 9 QDEDADDLSDALNENGFRVTKL 30 (109)
T ss_dssp EHHHHHHHHHHHHHTT--EEEE
T ss_pred cHhhHHHHHHHHHHCCceEEEE
Confidence 57888888888875 8888876
Done!