Query psy13242
Match_columns 76
No_of_seqs 41 out of 43
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 23:47:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q4o_A Uncharacterized protein 62.8 4.9 0.00017 29.0 2.6 45 10-65 18-62 (196)
2 3ufx_B Succinyl-COA synthetase 40.2 37 0.0013 25.6 4.4 38 18-58 147-184 (397)
3 2yhc_A BAMD, UPF0169 lipoprote 33.2 49 0.0017 20.7 3.5 34 40-73 161-194 (225)
4 4epz_A Transcription anti-term 29.2 37 0.0012 24.1 2.6 36 21-60 122-157 (162)
5 2xev_A YBGF; tetratricopeptide 24.9 88 0.003 16.9 3.3 34 39-72 89-122 (129)
6 4ffb_C Protein STU2; tubulin f 23.1 29 0.00099 23.3 1.1 38 18-57 4-41 (278)
7 3p1x_A Interleukin enhancer-bi 20.9 45 0.0015 19.4 1.5 23 35-57 52-74 (75)
8 2j59_M RHO-GTPase activating p 19.4 1.6E+02 0.0056 18.1 4.0 25 15-39 91-115 (168)
9 3llk_A Sulfhydryl oxidase 1; d 18.4 2.2E+02 0.0075 20.8 5.1 39 21-59 20-59 (261)
10 2i5f_A Pleckstrin; PH domain, 16.8 1E+02 0.0035 17.2 2.4 19 16-34 90-108 (109)
No 1
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A
Probab=62.81 E-value=4.9 Score=28.96 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=33.5
Q ss_pred ccccCccCccHHHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhhhcCchHHHHHH
Q psy13242 10 ITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSS 65 (76)
Q Consensus 10 ~~~~~~~~e~~~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~P~PifiNS~ 65 (76)
..--..++++|+++...++|=||-=|.. +-.+.++|+.|+|.|.+
T Consensus 18 ~~p~~~Ls~~E~~~Ll~m~EEEklArdv-----------Y~~l~e~~g~~~F~NIa 62 (196)
T 3q4o_A 18 GSHMQPISEEEKEGLIEMREEEKLARDV-----------YLTLYNKWKLQIFKNIA 62 (196)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhCCchHHHHH
Confidence 3345678889999999999999866654 67788999999998864
No 2
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=40.20 E-value=37 Score=25.56 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhhhcCc
Q psy13242 18 ENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPF 58 (76)
Q Consensus 18 e~~~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~P~ 58 (76)
=++.+|.+.+-+| |+|.. ...-++.|+++.+++.++|.
T Consensus 147 l~~~~a~~~~~~l--G~~g~-~~~l~~~l~~l~~l~~~~~~ 184 (397)
T 3ufx_B 147 FRPFEAREMVKRA--GLEGN-LNKLAQVLVALYRAYEGVDA 184 (397)
T ss_dssp CCHHHHHHHHHHH--TCCSC-HHHHHHHHHHHHHHHHHTTE
T ss_pred CCHHHHHHHHHHc--CCchH-HHHHHHHHHHHHHHHHcCCc
Confidence 3467788888887 99988 88888999999999999985
No 3
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=33.17 E-value=49 Score=20.72 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=26.4
Q ss_pred HHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhh
Q psy13242 40 GEQCEAIVRFPTLFEKYPFPILINSSFLKLADVF 73 (76)
Q Consensus 40 geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~F 73 (76)
|+--+||..|.+.++.||-.-..--++.+++++.
T Consensus 161 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY 194 (225)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence 5556899999999999998655556677777764
No 4
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription regulation, antagonist of transcription anti- termination; HET: MSE; 1.68A {Bacteroides uniformis atcc 8492}
Probab=29.23 E-value=37 Score=24.14 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhhhcCchH
Q psy13242 21 QDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPI 60 (76)
Q Consensus 21 ~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~P~Pi 60 (76)
++|..++-.-++.-= ..||.|+|-.| +-++++|.|.
T Consensus 122 ~eah~Ii~~W~~~~L---t~eq~e~ieel-~n~eeNpYP~ 157 (162)
T 4epz_A 122 HEAHQLIETWNISDL---TDEQKEIIEEL-RNFEENQYPW 157 (162)
T ss_dssp HHHHHHHHTSCGGGC---CHHHHHHHHHH-HHHHHTSCGG
T ss_pred HHHHHHHHhcccccC---CHHHHHHHHHH-hccccCCCch
Confidence 788887766665322 46899999998 6689999983
No 5
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=24.87 E-value=88 Score=16.87 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=24.4
Q ss_pred hHHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHh
Q psy13242 39 IGEQCEAIVRFPTLFEKYPFPILINSSFLKLADV 72 (76)
Q Consensus 39 ~geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~ 72 (76)
.|+.-+|+..|-+.++.+|-.-.+..+.-+|...
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 3566677888888888888777777776666553
No 6
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=23.07 E-value=29 Score=23.33 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhhhcC
Q psy13242 18 ENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYP 57 (76)
Q Consensus 18 e~~~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~P 57 (76)
|+|.|.... -|+..|-|++--++.+|+-.+..+|+..|
T Consensus 4 ~e~~d~skl--pl~e~l~sk~WK~R~eale~l~~~~~~~~ 41 (278)
T 4ffb_C 4 EEEVDYTTL--PLEERLTYKLWKARLEAYKELNQLFRNSV 41 (278)
T ss_dssp -------CC--CHHHHTTCSSHHHHHHHHHHHHHHHHTC-
T ss_pred cchhhhhcC--CHHHhcccCcHHHHHHHHHHHHHHHhhCc
Confidence 344454432 36778888888888888888888887654
No 7
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=20.91 E-value=45 Score=19.37 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.0
Q ss_pred cCCchHHHHHHHhhhhhhhhhcC
Q psy13242 35 RSSKIGEQCEAIVRFPTLFEKYP 57 (76)
Q Consensus 35 RS~~~geQ~eaI~~f~~l~e~~P 57 (76)
+|.+..||-.|-..+..|...||
T Consensus 52 ~SKK~Aeq~AA~~al~~L~~~~~ 74 (75)
T 3p1x_A 52 SNKKVAKAYAALAALEKLFPDTP 74 (75)
T ss_dssp SSHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHccCC
Confidence 67788888888888888887777
No 8
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=19.38 E-value=1.6e+02 Score=18.13 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=20.5
Q ss_pred ccCccHHHHHHHHHHHHhhhcCCch
Q psy13242 15 SLGENEQDANSALAELEKGLRSSKI 39 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLRS~~~ 39 (76)
+.-++++|+.+|+--|.+.......
T Consensus 91 l~A~s~~e~~~Wi~ai~~~~~~~~~ 115 (168)
T 2j59_M 91 FQAEDRDDMLAWIKTIQESSNLNEE 115 (168)
T ss_dssp EECSSHHHHHHHHHHHHHHCCCCHH
T ss_pred EEcCCHHHHHHHHHHHHHHHhcCcc
Confidence 4568899999999999998876643
No 9
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=18.39 E-value=2.2e+02 Score=20.78 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHhhhhhhhhhc-Cch
Q psy13242 21 QDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKY-PFP 59 (76)
Q Consensus 21 ~dA~~~lieLdKGLRS~~~geQ~eaI~~f~~l~e~~-P~P 59 (76)
..|..-++..|=+.++.--|+++.|+.+|-+++.+| |.-
T Consensus 20 e~al~~~L~~Ev~~~~~i~g~~l~AL~~fl~vl~~~~P~~ 59 (261)
T 3llk_A 20 ESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGR 59 (261)
T ss_dssp HHHHHHHHHTTGGGCSEEEHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhcCcCcCCCchhHHHHHHHHHHHHHCCCc
Confidence 456666777777888877799999999999999998 743
No 10
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=16.82 E-value=1e+02 Score=17.21 Aligned_cols=19 Identities=0% Similarity=0.064 Sum_probs=15.5
Q ss_pred cCccHHHHHHHHHHHHhhh
Q psy13242 16 LGENEQDANSALAELEKGL 34 (76)
Q Consensus 16 ~~e~~~dA~~~lieLdKGL 34 (76)
..++++|+.+|+-.|.+.+
T Consensus 90 ~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 90 QAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp ECSSHHHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHHHh
Confidence 3678899999999887654
Done!