Query psy13242
Match_columns 76
No_of_seqs 41 out of 43
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 23:47:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13242.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13242hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xn8a_ a.229.1.1 (A:) Hypothe 55.3 4.5 0.00033 26.4 2.9 33 42-74 34-69 (131)
2 d1v5pa_ b.55.1.1 (A:) Tapp2 {M 43.4 9 0.00066 21.2 2.7 23 15-37 100-122 (126)
3 d1z3ix2 c.37.1.19 (X:92-389) R 37.5 16 0.0011 23.5 3.5 43 15-57 55-108 (298)
4 d1plsa_ b.55.1.1 (A:) Pleckstr 34.6 5.1 0.00037 21.8 0.5 25 15-39 81-105 (113)
5 d1v5ua_ b.55.1.1 (A:) SET bind 32.7 15 0.0011 19.6 2.4 23 15-37 91-113 (117)
6 d2i5fa1 b.55.1.1 (A:244-347) P 32.2 15 0.0011 19.0 2.3 21 15-35 84-104 (104)
7 d1v89a_ b.55.1.1 (A:) Rho-GTPa 29.4 17 0.0012 19.5 2.2 23 15-37 92-114 (118)
8 d1v88a_ b.55.1.1 (A:) Oxystero 29.2 20 0.0015 19.6 2.6 22 16-37 105-126 (130)
9 d2j59m1 b.55.1.1 (M:931-1063) 28.6 42 0.0031 18.5 4.0 23 15-37 89-111 (133)
10 d1nzna_ a.118.8.1 (A:) Mitocho 28.1 49 0.0035 18.6 4.9 30 34-63 44-73 (122)
11 d1u5fa1 b.55.1.1 (A:109-219) S 27.9 20 0.0014 19.1 2.4 21 15-35 91-111 (111)
12 d1u5da1 b.55.1.1 (A:108-213) S 26.8 19 0.0014 19.0 2.1 21 15-35 83-103 (106)
13 d1droa_ b.55.1.1 (A:) beta-spe 22.4 25 0.0018 19.1 2.1 23 15-37 99-121 (122)
14 d1dd9a_ e.13.1.1 (A:) DNA prim 20.8 92 0.0067 20.8 5.3 52 23-74 254-306 (314)
15 d1q1sc_ a.118.1.1 (C:) Importi 20.4 39 0.0029 21.0 2.9 32 27-58 15-46 (434)
No 1
>d1xn8a_ a.229.1.1 (A:) Hypothetical protein YqbG {Bacillus subtilis [TaxId: 1423]}
Probab=55.29 E-value=4.5 Score=26.35 Aligned_cols=33 Identities=24% Similarity=0.571 Sum_probs=25.1
Q ss_pred HHHHHhhhhhhh--hhc-CchHHHHHHHHHHHHhhh
Q psy13242 42 QCEAIVRFPTLF--EKY-PFPILINSSFLKLADVFR 74 (76)
Q Consensus 42 Q~eaI~~f~~l~--e~~-P~PifiNS~lLkLAD~Fr 74 (76)
+.+.+.-.++-| .+| |+|=-+-.+++|||+.|.
T Consensus 34 e~~i~~~~g~~F~d~~y~~lPE~vklAl~kLAQy~A 69 (131)
T d1xn8a_ 34 TADIILKVGHDFSDAEYIPLPETVRLALLKLSQFYA 69 (131)
T ss_dssp HHHHHHHHTCCCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccCCCCcHHHHHHHHHHHHHHH
Confidence 344455556566 666 899999999999999885
No 2
>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.41 E-value=9 Score=21.19 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=19.7
Q ss_pred ccCccHHHHHHHHHHHHhhhcCC
Q psy13242 15 SLGENEQDANSALAELEKGLRSS 37 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLRS~ 37 (76)
+..|+++|+++|+-.|.+..|+.
T Consensus 100 l~Aes~~e~~~Wi~aL~~A~~~~ 122 (126)
T d1v5pa_ 100 LQANDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp EECSSHHHHHHHHHHHHHTTTTS
T ss_pred EECCCHHHHHHHHHHHHHHhccC
Confidence 34689999999999999998774
No 3
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=37.50 E-value=16 Score=23.54 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=34.6
Q ss_pred ccCccHHHHHHHHHHHHhhhcCC-----------chHHHHHHHhhhhhhhhhcC
Q psy13242 15 SLGENEQDANSALAELEKGLRSS-----------KIGEQCEAIVRFPTLFEKYP 57 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLRS~-----------~~geQ~eaI~~f~~l~e~~P 57 (76)
.|.+.+.|+-.||.+...+-+.. -+|..+++|..+..+++++|
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~ 108 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP 108 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 46789999999999987654431 25899999999999998874
No 4
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.58 E-value=5.1 Score=21.79 Aligned_cols=25 Identities=4% Similarity=0.076 Sum_probs=20.0
Q ss_pred ccCccHHHHHHHHHHHHhhhcCCch
Q psy13242 15 SLGENEQDANSALAELEKGLRSSKI 39 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLRS~~~ 39 (76)
+..++++|+.+|+..|...+++...
T Consensus 81 ~~a~s~~e~~~Wi~ai~~ai~~~~~ 105 (113)
T d1plsa_ 81 FQAAFLEERDAWVRDINKAIKCIEG 105 (113)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCHHHHHHHHHHHHHHHHhCcC
Confidence 4578899999999999987766543
No 5
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.71 E-value=15 Score=19.63 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=18.7
Q ss_pred ccCccHHHHHHHHHHHHhhhcCC
Q psy13242 15 SLGENEQDANSALAELEKGLRSS 37 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLRS~ 37 (76)
+..|+++|+++|+..|...+.+.
T Consensus 91 ~~a~s~~e~~~Wv~~l~~ai~~~ 113 (117)
T d1v5ua_ 91 FCAQDVPSAQQWVDRIQSCLSSG 113 (117)
T ss_dssp EECSSHHHHHHHHHHHHTTCCCC
T ss_pred EEeCCHHHHHHHHHHHHHHHhcC
Confidence 45689999999999998877553
No 6
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.20 E-value=15 Score=18.99 Aligned_cols=21 Identities=5% Similarity=0.099 Sum_probs=17.4
Q ss_pred ccCccHHHHHHHHHHHHhhhc
Q psy13242 15 SLGENEQDANSALAELEKGLR 35 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLR 35 (76)
+..++++|+.+|+--|...+|
T Consensus 84 ~~a~s~~e~~~W~~ai~~a~r 104 (104)
T d2i5fa1 84 LQAATPKERTEWIKAIQMASR 104 (104)
T ss_dssp EECSSHHHHHHHHHHHHHHHC
T ss_pred EEcCCHHHHHHHHHHHHHHhC
Confidence 457899999999998887665
No 7
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.36 E-value=17 Score=19.50 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=19.8
Q ss_pred ccCccHHHHHHHHHHHHhhhcCC
Q psy13242 15 SLGENEQDANSALAELEKGLRSS 37 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLRS~ 37 (76)
+..+.++|+.+|+--|.+.+.+.
T Consensus 92 ~~a~s~ee~~~Wi~aI~~a~~~~ 114 (118)
T d1v89a_ 92 LMASSQAEMEEWVKFLRRVAGSG 114 (118)
T ss_dssp EECSSHHHHHHHHHHHHHHHHCC
T ss_pred EEcCCHHHHHHHHHHHHHHHccC
Confidence 55689999999999999987765
No 8
>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.22 E-value=20 Score=19.56 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.2
Q ss_pred cCccHHHHHHHHHHHHhhhcCC
Q psy13242 16 LGENEQDANSALAELEKGLRSS 37 (76)
Q Consensus 16 ~~e~~~dA~~~lieLdKGLRS~ 37 (76)
..|+++|..+|+--|...++++
T Consensus 105 ~A~s~~e~~~Wi~al~~~i~~~ 126 (130)
T d1v88a_ 105 RATSESDGRCWMDALELALKSG 126 (130)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTT
T ss_pred ECCCHHHHHHHHHHHHHHhhcC
Confidence 3689999999999999988875
No 9
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.56 E-value=42 Score=18.51 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=18.2
Q ss_pred ccCccHHHHHHHHHHHHhhhcCC
Q psy13242 15 SLGENEQDANSALAELEKGLRSS 37 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLRS~ 37 (76)
+..++++|+++|+-.|....-..
T Consensus 89 f~A~s~~e~~~Wi~ai~~a~~~~ 111 (133)
T d2j59m1 89 FQAEDRDDMLAWIKTIQESSNLN 111 (133)
T ss_dssp EECSSHHHHHHHHHHHHHHCCCC
T ss_pred EEeCCHHHHHHHHHHHHHHHhcc
Confidence 34688999999999998765544
No 10
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.06 E-value=49 Score=18.60 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=23.2
Q ss_pred hcCCchHHHHHHHhhhhhhhhhcCchHHHH
Q psy13242 34 LRSSKIGEQCEAIVRFPTLFEKYPFPILIN 63 (76)
Q Consensus 34 LRS~~~geQ~eaI~~f~~l~e~~P~PifiN 63 (76)
++|...++.-+||.-+.+.++..|.|--++
T Consensus 44 ~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~ 73 (122)
T d1nzna_ 44 VRTRYNDDIRKGIVLLEELLPKGSKEEQRD 73 (122)
T ss_dssp TTSSSHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHhccCCchHHH
Confidence 577778888888888888888888775444
No 11
>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.92 E-value=20 Score=19.10 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=16.9
Q ss_pred ccCccHHHHHHHHHHHHhhhc
Q psy13242 15 SLGENEQDANSALAELEKGLR 35 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLR 35 (76)
+..++++|+++|+--|+.-||
T Consensus 91 ~~a~s~~e~~~W~~ai~~~i~ 111 (111)
T d1u5fa1 91 FTAASPKDAEEWVQQLKFILQ 111 (111)
T ss_dssp EECSSHHHHHHHHHHHHHHCC
T ss_pred EEcCCHHHHHHHHHHHHHHhC
Confidence 346889999999998887654
No 12
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.75 E-value=19 Score=18.97 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=17.1
Q ss_pred ccCccHHHHHHHHHHHHhhhc
Q psy13242 15 SLGENEQDANSALAELEKGLR 35 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLR 35 (76)
+.-|+++|+++|+-.|.+-++
T Consensus 83 f~a~s~~e~~~W~~ai~~~i~ 103 (106)
T d1u5da1 83 FTATSPAEARDWVDQISFLLK 103 (106)
T ss_dssp EECSSHHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHH
Confidence 456889999999999887653
No 13
>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=22.44 E-value=25 Score=19.10 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=19.5
Q ss_pred ccCccHHHHHHHHHHHHhhhcCC
Q psy13242 15 SLGENEQDANSALAELEKGLRSS 37 (76)
Q Consensus 15 ~~~e~~~dA~~~lieLdKGLRS~ 37 (76)
+..++++|.+.|+-.|.+-.+++
T Consensus 99 f~a~s~~d~~~Wv~al~~~~~~~ 121 (122)
T d1droa_ 99 LQAHDDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp EECSSSHHHHHHHHHHHHHHTCC
T ss_pred EECCCHHHHHHHHHHHHHHHhcc
Confidence 45788999999999999888775
No 14
>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}
Probab=20.78 E-value=92 Score=20.85 Aligned_cols=52 Identities=12% Similarity=-0.063 Sum_probs=40.2
Q ss_pred HHHHHHHHH-hhhcCCchHHHHHHHhhhhhhhhhcCchHHHHHHHHHHHHhhh
Q psy13242 23 ANSALAELE-KGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADVFR 74 (76)
Q Consensus 23 A~~~lieLd-KGLRS~~~geQ~eaI~~f~~l~e~~P~PifiNS~lLkLAD~Fr 74 (76)
..+++++.- ++.-..++.++..++..+.+++...|-|++-+..+-++|+.+.
T Consensus 254 ~~eFli~~~~~~~d~~s~e~k~~~~~~l~~~i~~i~d~~~r~~y~~~la~~lg 306 (314)
T d1dd9a_ 254 LSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLG 306 (314)
T ss_dssp HHHHHHHHHGGGCCTTSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 444555533 4554556788888999999999999999999999999998653
No 15
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.38 E-value=39 Score=20.96 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=25.1
Q ss_pred HHHHHhhhcCCchHHHHHHHhhhhhhhhhcCc
Q psy13242 27 LAELEKGLRSSKIGEQCEAIVRFPTLFEKYPF 58 (76)
Q Consensus 27 lieLdKGLRS~~~geQ~eaI~~f~~l~e~~P~ 58 (76)
+-+|=++|.|.++-.|++|+..+.+++...+-
T Consensus 15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~ 46 (434)
T d1q1sc_ 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQ 46 (434)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCC
Confidence 44556789999999999999988888765543
Done!