RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13242
         (76 letters)



>gnl|CDD|235988 PRK07318, PRK07318, dipeptidase PepV; Reviewed.
          Length = 466

 Score = 27.5 bits (62), Expect = 0.60
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 10  ITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFP------TLFEKY 56
            T D    E E + +  L   + GLR + + +  EA++           FE +
Sbjct: 189 TTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIAAFEAF 241


>gnl|CDD|234164 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO.
          Members of this protein family include YfiO, a
          near-essential protein of the outer membrane, part of a
          complex involved in protein insertion into the
          bacterial outer membrane. Many proteins in this family
          are annotated as ComL, based on the involvement of this
          protein in natural transformation with exogenous DNA in
          Neisseria gonorrhoeae. This protein family shows
          sequence similarity to, but is distinct from, the
          tol-pal system protein YbgF (TIGR02795) [Protein fate,
          Protein and peptide secretion and trafficking].
          Length = 235

 Score = 25.6 bits (57), Expect = 2.2
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 7/49 (14%)

Query: 24 NSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADV 72
            A   L+ G  +       EAI  F  L  +YPF      + L LA  
Sbjct: 38 EEAKEALDSGDYT-------EAIKYFEALESRYPFSPYAEQAQLDLAYA 79


>gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4
           hydrolase.  This family includes leukotriene A4
           hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog
           cold-active aminopeptidase (Colwellia
           psychrerythraea-type peptidase; ColAP), both members of
           the aminopeptidase M1 family. LTA4H, is a bifunctional
           enzyme possessing an aminopeptidase as well as an
           epoxide hydrolase activity.  The two activities occupy
           different, but overlapping sites. The activity and
           physiological relevance of the aminopeptidase is as yet
           unknown while the epoxide hydrolase converts leukotriene
           A4 (LTA4) into leukotriene B4 (LTB4), a potent
           chemotaxin that is fundamental to the inflammatory
           response of mammals. It accepts a variety of substrates,
           including some opioid, di- and tripeptides, as well as
           chromogenic aminoacyl-p-nitroanilide derivatives. The
           aminopeptidase activity of LTA4H is possibly involved in
           the processing of peptides related to inflammation and
           host defense. Kinetic analysis shows that LTA4H
           hydrolyzes arginyl tripeptides with high efficiency and
           specificity, indicating its function as an arginyl
           aminopeptidase. LTA4H is overexpressed in certain human
           cancers, and has been identified as a functionally
           important target for mediating anticancer properties of
           resveratrol, a well known red wine polyphenolic compound
           with cancer chemopreventive activity.
          Length = 442

 Score = 25.6 bits (57), Expect = 3.1
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 14/57 (24%)

Query: 4   LGSRLSITLDSSLGENEQ----------DANSALAELEKGLRSSKIG----EQCEAI 46
           LGS L+I+L     + +              SAL  L     + K       QC+AI
Sbjct: 78  LGSPLTISLPPEYAKGDTFQVTIKYETTPKASALQWLTPEQTAGKKHPYLFSQCQAI 134


>gnl|CDD|232831 TIGR00115, tig, trigger factor.  Trigger factor is a
           ribosome-associated molecular chaperone and is the first
           chaperone to interact with nascent polypeptide. Trigger
           factor can bind at the same time as the signal
           recognition particle (SRP), but is excluded by the SRP
           receptor (FtsY). The central domain of trigger factor
           has peptidyl-prolyl cis/trans isomerase activity. This
           protein is found in a single copy in virtually every
           bacterial genome [Protein fate, Protein folding and
           stabilization].
          Length = 408

 Score = 24.8 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 23  ANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYP 57
           +   +   E+ L   K GE+ E  V FP   E Y 
Sbjct: 180 SGQFIPGFEEQLVGMKAGEEKEIKVTFP---EDYH 211


>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
          Length = 595

 Score = 24.8 bits (54), Expect = 5.1
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 32  KGLRSSK--IGEQCEAIVRFPTLFEKYPFPILINSSFLKL 69
           KGLRS K   G+  + I+  P LF      + +NSS LKL
Sbjct: 70  KGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKL 109


>gnl|CDD|235469 PRK05443, PRK05443, polyphosphate kinase; Provisional.
          Length = 691

 Score = 24.7 bits (55), Expect = 6.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 10  ITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRF 49
           +T ++ L  +E++A   L  LEK L+  + GE    +VR 
Sbjct: 230 VTRNADLEVDEEEAEDLLEALEKELKRRRFGE----VVRL 265


>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
           trafficking and secretion].
          Length = 526

 Score = 24.5 bits (53), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 13  DSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFP 59
           +SS    EQ   S L +L + L S  I +Q +A+ +F  L  K   P
Sbjct: 59  ESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSP 105


>gnl|CDD|185083 PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provisional.
          Length = 321

 Score = 24.3 bits (53), Expect = 7.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 15  SLGENEQDANSALAELEKGLRSSKI 39
            +G  EQ ANSA A  + G +  K+
Sbjct: 126 VIGTPEQMANSASALWQAGAKLLKV 150


>gnl|CDD|223924 COG0855, Ppk, Polyphosphate kinase [Inorganic ion transport and
           metabolism].
          Length = 696

 Score = 24.2 bits (53), Expect = 7.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 10  ITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRF 49
           IT D+ L   E++A   L  LE+ L+  + GE     VR 
Sbjct: 231 ITRDADLEVEEEEAEDLLEALEQELKRRRTGE----PVRL 266


>gnl|CDD|171815 PRK12911, PRK12911, bifunctional preprotein translocase subunit
           SecD/SecF; Reviewed.
          Length = 1403

 Score = 24.4 bits (53), Expect = 7.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 3   LLGSRLSITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVR 48
           LL SR +    S    +E+D  + L+ LE   +  ++ E  + ++ 
Sbjct: 208 LLPSRKTQAFLSRFFSSERDFTAFLSRLESLSQDEEVKEARQELLD 253


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0839    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,660,248
Number of extensions: 269850
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 14
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)