RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13242
(76 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.092
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 35/62 (56%)
Query: 15 SLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPILINSSFLKLADVF- 73
SLGE +ALA A V I S +++ VF
Sbjct: 1763 SLGE-----YAALA--------------SLADV----------MSI---ESLVEV--VFY 1788
Query: 74 RG 75
RG
Sbjct: 1789 RG 1790
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 0.53
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 9 SIT-LDSSLGENEQDANSAL---AELE 31
++ L +SL D+ AL A +E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP,
transferase; HET: ATP; 2.50A {Escherichia coli} SCOP:
a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Length = 687
Score = 26.7 bits (60), Expect = 0.59
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 10 ITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRF 49
+T D+ + S + + L+ E VRF
Sbjct: 226 MTRDAEYDLVHEMEASLMELMSSSLKQRLTAE----PVRF 261
>2o8r_A Polyphosphate kinase; structural genomics, protein structure
initiative, PSI, nysgrc, NEW YORK structural genomics
research consortium; HET: MSE; 2.70A {Porphyromonas
gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Length = 705
Score = 26.7 bits (60), Expect = 0.60
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 10 ITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRF 49
++ D+ L + Q E+ K +++ K+G RF
Sbjct: 234 VSRDADLLLDAQRPEDLPGEIRKKVKTRKLGA----PTRF 269
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding,
integrin activation, cytoplas membrane, cell adhesion;
HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 26.6 bits (58), Expect = 0.75
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 9 SITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTL 52
S ++ + + ++AL++LE L K I P L
Sbjct: 6 SENHLNNSDKEVDEVDAALSDLEITLEGGKTSTILGDITSIPEL 49
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 26.0 bits (56), Expect = 1.1
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 45 AIVRFPTLFEKYPFPILINSS-----FLKLADVFRGG 76
++R LF Y I L ++ RG
Sbjct: 80 TVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGS 116
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W
mutant, transport protein; 1.65A {Geobacillus
stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T*
2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Length = 88
Score = 24.1 bits (53), Expect = 3.6
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 1 MTL---LGSRLSITLDSSLGENEQDANSALAELEKGLRSSKIGE 41
M+L G+ + IT + G + +A +A L L + E
Sbjct: 51 MSLGIPKGATIKITAE---GADAAEA---MAALTDTLAKEGLAE 88
>3ihs_A Phosphocarrier protein HPR; dimerization domain SWAP beta strand,
IDP01131, structural genomics; HET: MSE; 1.15A {Bacillus
anthracis} PDB: 1zvv_W* 1mo1_A 1mu4_A 2rlz_A 2ak7_A*
1k1c_A
Length = 106
Score = 23.8 bits (52), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 1 MTL---LGSRLSITLDSSLGENEQDANSALAEL 30
M+L GS ++IT + G + ++A ALA
Sbjct: 75 MSLAIGTGSMITITTE---GSDAEEALEALAAY 104
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase,
bacteria, protein/protein interaction, transferase;
2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Length = 100
Score = 23.8 bits (52), Expect = 5.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
Query: 1 MTL---LGSRLSITLDSSLGENEQDANSALAELEKGLRSSKIGE 41
M+L G+ ++I+ G +E DA L LE+ ++S ++GE
Sbjct: 63 MSLGIAKGAEITISAS---GADENDA---LNALEETMKSERLGE 100
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex
(immunoglobulin/hydrolase), immunoglobulin V region,
signal, hydrolase, glycosidase, bacteriolytic enzyme,
egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB:
1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B
1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H
1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Length = 116
Score = 23.6 bits (52), Expect = 5.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 4 LGSRLSITLDSS 15
L SRLSI+ D+S
Sbjct: 63 LKSRLSISKDNS 74
>1ptf_A Histidine-containing phosphocarrier protein HPR;
phosphotransferase; 1.60A {Enterococcus faecalis} SCOP:
d.94.1.1 PDB: 1qfr_A 1fu0_A*
Length = 88
Score = 23.3 bits (51), Expect = 6.7
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 5 GSRLSITLDSSLGENEQDANSALAELEKGLRSSKIGE 41
GS ++IT+D G +E + +A + + L+ + E
Sbjct: 58 GSDVTITVD---GADEAEG---MAAIVETLQKEGLAE 88
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma
capricolum} SCOP: d.94.1.1
Length = 88
Score = 23.3 bits (51), Expect = 6.8
Identities = 5/37 (13%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 5 GSRLSITLDSSLGENEQDANSALAELEKGLRSSKIGE 41
G+ ++I D G + A + +++ + + + +
Sbjct: 57 GTEITIQAD---GNDADQA---IQAIKQTMIDTALIQ 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer; HET:
DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 23.9 bits (52), Expect = 7.1
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 23 ANSALAELEKGLRSSKIGEQCEAIVRFPTLFEKYPFPIL 61
+ E EK +S ++ + T+ + +L
Sbjct: 978 GHRKAREFEKMNQSLRLFREVCLASERSTVDAEAVHKLL 1016
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.373
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,037,052
Number of extensions: 45421
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 17
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)