RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13242
         (76 letters)



>d1pcha_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein
          (HPr) {Mycoplasma capricolum [TaxId: 2095]}
          Length = 88

 Score = 23.4 bits (51), Expect = 2.0
 Identities = 5/37 (13%), Positives = 17/37 (45%), Gaps = 6/37 (16%)

Query: 5  GSRLSITLDSSLGENEQDANSALAELEKGLRSSKIGE 41
          G+ ++I  D   G +   A   +  +++ +  + + +
Sbjct: 57 GTEITIQAD---GNDADQA---IQAIKQTMIDTALIQ 87


>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus
          delbrueckii [TaxId: 1584]}
          Length = 196

 Score = 24.1 bits (51), Expect = 2.2
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 10 ITLDSSLGENEQDANSALAELEKGLRSSKIGEQCEAIVRFPTL------FEKYPFPILIN 63
           TL+ S   ++   +  L + + G+ ++   +   A +  P L      +E +     ++
Sbjct: 4  FTLEFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYESFLADKELD 63

Query: 64 SSFLKLADVFR 74
           SF    +   
Sbjct: 64 GSFEINDESAD 74


>d2asra_ a.24.2.1 (A:) Aspartate receptor, ligand-binding domain
           {Escherichia coli [TaxId: 562]}
          Length = 142

 Score = 22.1 bits (47), Expect = 8.2
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 11  TLDSSLGENEQDANSALAELEKGLRSSKIGE 41
               ++ E  ++  +AL EL   L     G 
Sbjct: 81  ATSRNIDEKYKNYYTALTELIDYLDYGNTGA 111


>d2axto1 f.4.1.4 (O:30-271) Manganese-stabilising protein, PsbO
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 242

 Score = 22.1 bits (47), Expect = 8.8
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 2   TLLGSRLSITLDSSLGENEQDANSALAELEK-GLRSSKIGEQCEAIVRFPTLF 53
           T L +R + +LD   GE + +++ +L  +E+ G+    +  Q     R P LF
Sbjct: 65  TKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLF 117


>d2hpra_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein
          (HPr) {Bacillus subtilis [TaxId: 1423]}
          Length = 87

 Score = 21.9 bits (47), Expect = 8.9
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 6/37 (16%)

Query: 5  GSRLSITLDSSLGENEQDANSALAELEKGLRSSKIGE 41
          G+ ++I+     G +E DA   L  LE+ ++   +GE
Sbjct: 57 GAEITISAS---GADENDA---LNALEETMKCEGLGE 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 241,049
Number of extensions: 8140
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 8
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)