Query psy13245
Match_columns 130
No_of_seqs 124 out of 1045
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 23:50:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_W 40S ribosomal protein S 100.0 5.5E-55 1.9E-59 312.9 12.9 130 1-130 1-130 (130)
2 1i6u_A 30S ribosomal protein S 100.0 1E-53 3.6E-58 306.2 13.3 129 1-130 1-130 (130)
3 2xzm_H Ribosomal protein S8 co 100.0 8.2E-54 2.8E-58 306.7 10.7 129 1-130 1-130 (130)
4 2vqe_H 30S ribosomal protein S 100.0 2.4E-49 8.3E-54 286.0 11.5 121 3-130 2-138 (138)
5 1sei_A Ribosomal protein S8; p 100.0 8.5E-49 2.9E-53 280.7 13.8 120 3-130 2-130 (130)
6 3bbn_H Ribosomal protein S8; s 100.0 1.2E-48 4.3E-53 281.0 12.4 119 3-130 2-134 (134)
7 1s03_H 30S ribosomal protein S 100.0 3.3E-48 1.1E-52 277.4 13.8 119 3-130 2-129 (129)
8 3rf2_A 30S ribosomal protein S 100.0 5.2E-48 1.8E-52 286.4 12.5 123 1-130 1-168 (168)
9 2hgc_A YJCQ protein; SR346, st 65.6 3.1 0.00011 27.8 1.9 21 35-55 34-54 (102)
10 2zqe_A MUTS2 protein; alpha/be 41.6 61 0.0021 20.1 7.5 60 6-66 17-82 (83)
11 2zrr_A Mundticin KS immunity p 30.6 17 0.00057 24.9 1.0 44 5-49 55-98 (118)
12 3qd7_X Uncharacterized protein 30.1 1.3E+02 0.0045 20.4 7.5 64 5-68 59-133 (137)
13 2heo_A Z-DNA binding protein 1 29.2 34 0.0012 20.1 2.2 17 33-49 41-57 (67)
14 2k19_A Putative piscicolin 126 27.1 14 0.00048 24.5 0.1 44 5-49 35-78 (98)
15 1r7j_A Conserved hypothetical 25.6 14 0.00047 23.6 -0.1 43 4-50 7-53 (95)
16 2hzt_A Putative HTH-type trans 24.3 71 0.0024 20.1 3.2 19 34-52 45-63 (107)
17 1a6s_A GAG polyprotein; core p 24.3 26 0.0009 22.3 1.0 22 29-50 21-42 (87)
18 3l7w_A Putative uncharacterize 22.3 85 0.0029 19.9 3.3 24 30-53 39-62 (108)
19 4gl6_A Hypothetical protein; s 22.2 40 0.0014 24.7 1.7 50 81-130 114-180 (247)
20 3f8b_A Transcriptional regulat 21.4 1.3E+02 0.0043 19.4 4.1 24 29-52 45-68 (116)
21 1z7u_A Hypothetical protein EF 21.0 80 0.0027 20.0 3.0 20 33-52 52-71 (112)
22 2fsw_A PG_0823 protein; alpha- 20.6 94 0.0032 19.4 3.2 20 33-52 55-74 (107)
23 1xma_A Predicted transcription 20.5 1.5E+02 0.005 20.1 4.4 25 29-53 74-98 (145)
24 1ub9_A Hypothetical protein PH 20.2 1E+02 0.0034 18.4 3.2 19 34-52 47-65 (100)
No 1
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h
Probab=100.00 E-value=5.5e-55 Score=312.85 Aligned_cols=130 Identities=78% Similarity=1.260 Sum_probs=125.3
Q ss_pred CCccchHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceeeEEEEcCCCCceEEEEeecccCcCccccccee
Q psy13245 1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRFD 80 (130)
Q Consensus 1 m~~~d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~i~Lky~~~~~~~IspRvy 80 (130)
|++||+||||||+||||++++|++|+.+|+||++.+||++|++||||++|++.++++++++||+|||+.++|++||||+|
T Consensus 1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~r~~k~~~ISpR~y 80 (130)
T 3u5c_W 1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFN 80 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHTTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCB
T ss_pred CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHHCCCccceeeeccCCCceEEEEEccccCCCCeEEccee
Confidence 88999999999999999999999965459999999999999999999999999998899999999999999999999999
Q ss_pred ecccchhhhhhCccCCCCceEEEEecCCccccHHHHHHcCCCeEEEEEEC
Q psy13245 81 VPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130 (130)
Q Consensus 81 ~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~V~ 130 (130)
++.+||++|.+|++|++|+|++|||||+|||||+|||++++|||+|||||
T Consensus 81 ~~~~el~kv~~g~lp~~~~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~ 130 (130)
T 3u5c_W 81 VKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130 (130)
T ss_dssp CCSSHHHHHHHHHCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred cCHHHhHHHHcCCCCCCCceEEEEEcCCCceeHHHHHHhCCCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999998
No 2
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1
Probab=100.00 E-value=1e-53 Score=306.23 Aligned_cols=129 Identities=44% Similarity=0.831 Sum_probs=124.2
Q ss_pred CCccchHHHHHHHhHhhhhhCCceEEEE-eccchHHHHHHHHhhcCceeeEEEEcCCCCceEEEEeecccCcCcccccce
Q psy13245 1 MVRVNVLSDALKSINNAEKRGKRQVLIR-PCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRF 79 (130)
Q Consensus 1 m~~~d~iad~lt~IrNa~~~~~~~~v~~-p~sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~i~Lky~~~~~~~IspRv 79 (130)
|+|+||||||||+||||++++|.+ |.+ |+||++.+||++|++||||++|++.++++++++||+|||+.+++++||||+
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~-V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~ 79 (130)
T 1i6u_A 1 MSLMDPLANALNHISNCERVGKKV-VYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRF 79 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCC
T ss_pred CCccCHHHHHHHHhHHHHHcCCCE-EEEECchHHHHHHHHHHHHCCccccEEEEecCCceEEEEEEeeecccCCEEECCe
Confidence 888999999999999999999999 578 999999999999999999999999888878899999999999999999999
Q ss_pred eecccchhhhhhCccCCCCceEEEEecCCccccHHHHHHcCCCeEEEEEEC
Q psy13245 80 DVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130 (130)
Q Consensus 80 y~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~V~ 130 (130)
|++.+|||+|.++++|++|+|++|||||+|||||+||+++++|||+||+||
T Consensus 80 y~~~~~l~kv~~~~lp~~g~G~~IlSTs~Gimt~~eAr~~~vGGevL~~v~ 130 (130)
T 1i6u_A 80 PVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130 (130)
T ss_dssp EECTTCCHHHHHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred ecChhhhHHHHhccCCCCCceEEEEECCcCceeHHHHHHcCCCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999999998
No 3
>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H
Probab=100.00 E-value=8.2e-54 Score=306.73 Aligned_cols=129 Identities=66% Similarity=1.166 Sum_probs=124.3
Q ss_pred CCccchHHHHHHHhHhhhhhCCceEEEE-eccchHHHHHHHHhhcCceeeEEEEcCCCCceEEEEeecccCcCcccccce
Q psy13245 1 MVRVNVLSDALKSINNAEKRGKRQVLIR-PCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRF 79 (130)
Q Consensus 1 m~~~d~iad~lt~IrNa~~~~~~~~v~~-p~sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~i~Lky~~~~~~~IspRv 79 (130)
|+|+||||||||+||||++++|.+ |.+ |+||++.+||++|++||||++|++.++++++++||+|||..+++++||||+
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~-V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~ 79 (130)
T 2xzm_H 1 MVKVNILAECLKDLVNAEKMGKKQ-VLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKKVVVELIGRINKCGVISPRY 79 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHHTCSE-EEECSCCHHHHHHHHHHHHHTSSCCEEEECCSSSCEEEEECCSCCCCEEECTTCC
T ss_pred CCccCHHHHHHHHhHHHHHcCCCE-EEEEcchHHHHHHHHHHHHCCCcceEEEEecCCceEEEEEEecccccCcEEECce
Confidence 888899999999999999999999 578 999999999999999999999999888878899999999999999999999
Q ss_pred eecccchhhhhhCccCCCCceEEEEecCCccccHHHHHHcCCCeEEEEEEC
Q psy13245 80 DVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130 (130)
Q Consensus 80 y~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~V~ 130 (130)
|++.+|||+|.++++|++|+|++|||||+|||||+||+++++|||+|||||
T Consensus 80 y~~~~~l~kv~~~~lp~~g~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~ 130 (130)
T 2xzm_H 80 DVPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKRHTGGKILGFFY 130 (130)
T ss_dssp BCCGGGHHHHHHHHSSSTTCCCCCEECSSCEECTTHHHHTTCCCEECEEEC
T ss_pred eCCHHHhHHHHhccCCCCCceEEEEECCccceeHHHHHHcCCCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999999998
No 4
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...
Probab=100.00 E-value=2.4e-49 Score=285.96 Aligned_cols=121 Identities=27% Similarity=0.422 Sum_probs=113.2
Q ss_pred ccchHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceeeEEEEcCCCCceEEEEeecccCc-------Cccc
Q psy13245 3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNK-------CGVI 75 (130)
Q Consensus 3 ~~d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~i~Lky~~~~-------~~~I 75 (130)
|+|+||||||+||||++++|.+| .+|+|+++.+||++|++||||++|++.+++++++++|+|||+.++ +++|
T Consensus 2 ~~d~iad~ltrIrNA~~~~k~~V-~iP~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~~~~~~~~~~~vI 80 (138)
T 2vqe_H 2 LTDPIADMLTRIRNATRVYKEST-DVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVI 80 (138)
T ss_dssp CSCHHHHHHHHHHHHHHTTCSCC-CCBCCHHHHHHHHHHHHTTSSSEEEEEEETTEEEEEEECCBCCCCSSSCCCCCBSC
T ss_pred ccchHHHHHHHhHHHHHcCCCEE-EecCcHHHHHHHHHHHHcCcceeEEEEecCCceEEEEEEecCcCCccccccCCccc
Confidence 57999999999999999999995 789999999999999999999999988777778999999996666 7877
Q ss_pred c-------c--ceeecccchhhhhhCccCCCCceEEEEecCCccccHHHHHHcCCCeEEEEEEC
Q psy13245 76 S-------P--RFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130 (130)
Q Consensus 76 s-------p--Rvy~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~V~ 130 (130)
+ | |+|++.+|||+|.+| +|++|||||+|||||+||+++++|||+||+||
T Consensus 81 ~~ikriSkPg~Riy~~~~~lpkv~~g------~Gi~IlSTskGimt~~eAr~~~vGGEvLc~v~ 138 (138)
T 2vqe_H 81 HHIRRISKPGRRVYVGVKEIPRVRRG------LGIAILSTSKGVLTDREARKLGVGGELICEVW 138 (138)
T ss_dssp SCEEECSBTTBCCEECGGGCCCGGGG------TSEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred cccEEecCCCcceEeCHHHHHHHhCC------ceEEEEECCCCceeHHHHHHcCCCCEEEEEEC
Confidence 5 7 999999999999866 99999999999999999999999999999998
No 5
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=100.00 E-value=8.5e-49 Score=280.71 Aligned_cols=120 Identities=29% Similarity=0.520 Sum_probs=111.8
Q ss_pred ccchHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceeeEEEEcCCCCceEEEEeecccCcCccc------c
Q psy13245 3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVI------S 76 (130)
Q Consensus 3 ~~d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~i~Lky~~~~~~~I------s 76 (130)
|+||||||||+||||++++|.+| .+|+||++.+||++|++||||++|++.+++++++++|+|||+.+ +++| |
T Consensus 2 ~~d~iad~lt~IrNA~~~~~~~v-~iP~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~-~~vI~~i~rIS 79 (130)
T 1sei_A 2 MTDPIADMLTAIRNANMVRHEKL-EVPASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPN-ERVITGLKRIS 79 (130)
T ss_dssp CSHHHHHHHHHHHHHHHTTCSEE-EEECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSS-SBSCCCEEECC
T ss_pred ccChHHHHHHHhHHHHHcCCCEE-EecCcHHHHHHHHHHHHCCCceeEEEEecCCccEEEEEEecCCC-CcceeeeEEEc
Confidence 57999999999999999999995 78999999999999999999999999888778899999999766 5555 4
Q ss_pred -c--ceeecccchhhhhhCccCCCCceEEEEecCCccccHHHHHHcCCCeEEEEEEC
Q psy13245 77 -P--RFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130 (130)
Q Consensus 77 -p--Rvy~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~V~ 130 (130)
| |+|++.+|||+|.+| +|++|||||+|||||+||+++++|||+||+||
T Consensus 80 kPg~R~y~~~~~l~~v~~g------~Gi~IlSTskGimt~~eAr~~~vGGevL~~v~ 130 (130)
T 1sei_A 80 KPGLRVYVKAHEVPRVLNG------LGIAILSTSQGVLTDKEARQKGTGGEIIAYVI 130 (130)
T ss_dssp BTTBCCEECGGGCCCCCTT------SCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCCCeeEcCHHHHHHHhCC------CeEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence 7 999999999999855 99999999999999999999999999999998
No 6
>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.2e-48 Score=281.04 Aligned_cols=119 Identities=22% Similarity=0.391 Sum_probs=111.4
Q ss_pred ccchHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceeeEEEEcC-CCCceEEEEeecccCcCcccc-----
Q psy13245 3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDD-HRAGKIVVNLKGRLNKCGVIS----- 76 (130)
Q Consensus 3 ~~d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~~~~~~~-~~~~~i~i~Lky~~~~~~~Is----- 76 (130)
|+|+||||||+||||++++|.+ |.+|+||++.+||++|++||||++|++.++ ++ ++++|+||| .+++++|+
T Consensus 2 ~~d~iad~lt~IrNA~~~~k~~-V~iP~Sk~~~~il~iL~~eGyI~~~~~~~~~~~-~~i~v~Lky-~~~~~vI~p~~~~ 78 (134)
T 3bbn_H 2 GKDTIADIITCIRNADMNRKGT-VRIVSTNITENIVKILLREGFIENARKHQERNK-YFLVLTLRH-RRNKKGPYLNTFH 78 (134)
T ss_dssp CSCHHHHHHHHHHHHHHTTCSE-EEEECCHHHHHHTHHHHTTTSSSCEEEEESSSC-EEEEEECCB-CCCSSSCCBSCSC
T ss_pred cccHHHHHHHHhHHHHHcCCCE-EEEeCcHHHHHHHHHHHHCCcceeEEEEecCCC-cEEEEEEec-CCCCceeeccccc
Confidence 5799999999999999999999 478999999999999999999999998877 66 899999999 56677777
Q ss_pred ------c--ceeecccchhhhhhCccCCCCceEEEEecCCccccHHHHHHcCCCeEEEEEEC
Q psy13245 77 ------P--RFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130 (130)
Q Consensus 77 ------p--Rvy~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~V~ 130 (130)
| |+|++.+|||+|.+| +|++|||||+|||||+||+++++|||+|||||
T Consensus 79 ikriSkPg~Riy~~~~~lpkv~~g------~Gi~IlSTskGimt~~eAr~~~vGGevLc~v~ 134 (134)
T 3bbn_H 79 LKRVSRPGLRIYSNYQRIPRILGG------MGIAILSTSRGIMTDREARLEGIGGEILCYIW 134 (134)
T ss_dssp EEESSBTTBCCEECSSSCCCGGGT------TSEEEEEESSSEECTTHHHHHTCCEEEEEEEC
T ss_pred cEEecCCCcceEcCHHHHHHHhCC------ceEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence 5 999999999999866 99999999999999999999999999999998
No 7
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...
Probab=100.00 E-value=3.3e-48 Score=277.37 Aligned_cols=119 Identities=28% Similarity=0.462 Sum_probs=109.2
Q ss_pred ccchHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceeeEEEEcCCCCceEEEEeecccCcCccc------c
Q psy13245 3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVI------S 76 (130)
Q Consensus 3 ~~d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~i~Lky~~~~~~~I------s 76 (130)
|+||||||||+||||++++|.+| .+|+||++.+||++|++||||++|++ ++++++++||+||| .+++++| |
T Consensus 2 ~~d~iad~lt~IrNA~~~~~~~v-~iP~Sk~~~~il~iL~~eGyI~~~~~-~~~~~~~i~v~Lky-~~~~~vI~~i~rIS 78 (129)
T 1s03_H 2 MQDPIADMLTRIRNGQAANKAAV-TMPSSKLKVAIANVLKEEGFIEDFKV-EGDTKPELELTLKY-FQGKAVVESIQRVS 78 (129)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEE-EEECCHHHHHHHHHHHHTTSEEEEEE-ECSSSCEEEEEECB-SSSSBSCSCEEECS
T ss_pred CcChHHHHHHHhHHHHHcCCCEE-EEeCcHHHHHHHHHHHHCCcceeEEE-cCCCceEEEEEEec-CCCCcccccceEEc
Confidence 57999999999999999999994 78999999999999999999999998 66677899999999 4556655 4
Q ss_pred -c--ceeecccchhhhhhCccCCCCceEEEEecCCccccHHHHHHcCCCeEEEEEEC
Q psy13245 77 -P--RFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130 (130)
Q Consensus 77 -p--Rvy~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~V~ 130 (130)
| |+|++.+|||+|.+| +|++|||||+|||||+||+++++|||+||+||
T Consensus 79 kPg~R~y~~~~~l~kv~~g------~Gi~IlSTskGimt~~eAr~~~vGGevL~~v~ 129 (129)
T 1s03_H 79 RPGLRIYKRKDELPKVMAG------LGIAVVSTSKGVMTDRAARQAGLGGEIICYVA 129 (129)
T ss_dssp BTTBCCEECGGGSCCSCSS------SCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCCcceEcCHHHHHHHhCC------ceEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence 7 999999999999855 99999999999999999999999999999998
No 8
>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus}
Probab=100.00 E-value=5.2e-48 Score=286.36 Aligned_cols=123 Identities=28% Similarity=0.444 Sum_probs=111.4
Q ss_pred CCccchHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceeeEEEEcCC------------------------
Q psy13245 1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDH------------------------ 56 (130)
Q Consensus 1 m~~~d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~~~~~~~~------------------------ 56 (130)
|.|+|+|||||||||||+++++.+ |.+|+|+++++|+++|++||||++|++.+++
T Consensus 1 m~~~d~iad~lt~IrNA~~ar~~~-v~iP~Skl~~~i~~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 79 (168)
T 3rf2_A 1 MSAVDPIADMFSAIKNAIMRRDDF-LYVPSSKLKERILDVLKKEGFIQDWEALKGEKYEEEYKKMKELAEKSPNPKMKRY 79 (168)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSE-EEEECCHHHHHHHHHHHHHTSEEEEEECCHHHHHHHHHHHHHHHHSSCCSSSHHH
T ss_pred CCcccHHHHHHHHHHHHHHcCCCE-EEecccHHHHHHHHHHHHCCCccceEEecCCccccccccccccccCCCccccccc
Confidence 888999999999999999999999 5799999999999999999999999998765
Q ss_pred ----------CCceEEEEeecccC--cCccc------c-c--ceeecccchhhhhhCccCCCCceEEEEecCCccccHHH
Q psy13245 57 ----------RAGKIVVNLKGRLN--KCGVI------S-P--RFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEE 115 (130)
Q Consensus 57 ----------~~~~i~i~Lky~~~--~~~~I------s-p--Rvy~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~e 115 (130)
.++++||+|||+++ ++++| | | |+|++.+||++|.+| +|++|||||+|||||+|
T Consensus 80 ~~~~t~~n~~~~~~l~v~LKY~~~~~k~pvI~~lkrISKPg~Riy~~~~eLprv~~G------lGi~IlSTskGImt~rE 153 (168)
T 3rf2_A 80 LKQLEEYNKGTQYPIKIYLKYLDPKKRKSAITNIVKVSKGGRRVYAGVRTMPYVKRG------LGIAIVSTDAGVMTDHE 153 (168)
T ss_dssp HHHHHHTTSTTCCEEEEEECBSSTTSCSBSCSCEEECSCSSSCCEECSTTCCCSGGG------TSEEEEEETTEEEEHHH
T ss_pred ccccccccccccceEEEEEEeecCCCCCccccccEEecCCCceEEcCHHHHHHHHcC------CcEEEEEcCCcceeHHH
Confidence 57899999999743 46766 3 8 999999999999976 89999999999999999
Q ss_pred HHHcCCCeEEEEEEC
Q psy13245 116 ARRKHLGGKILGFFF 130 (130)
Q Consensus 116 A~~~~vGGevL~~V~ 130 (130)
|+++++|||+|||||
T Consensus 154 Ar~~~vGGevLc~Vw 168 (168)
T 3rf2_A 154 ARRMRKGGEVIAFVW 168 (168)
T ss_dssp HHHTTCCEEEEEEEC
T ss_pred HHHhCCCCEEEEEEC
Confidence 999999999999998
No 9
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=65.60 E-value=3.1 Score=27.76 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.1
Q ss_pred HHHHHHHhhcCceeeEEEEcC
Q psy13245 35 VKFLTVMMKHGYIGEFEIVDD 55 (130)
Q Consensus 35 ~~il~iL~~eG~I~~~~~~~~ 55 (130)
..+++-|.++|||.|+.+.++
T Consensus 34 ~~il~~L~d~GyI~Gv~~~~~ 54 (102)
T 2hgc_A 34 DDAVNFLKREGYIIGVHYSDD 54 (102)
T ss_dssp HHHHHHHHHHTSEECCEESSS
T ss_pred HHHHHHHHHCCCccceEEEeC
Confidence 478899999999999998643
No 10
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=41.57 E-value=61 Score=20.06 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=44.8
Q ss_pred hHHHHHHHhHhhhhhCCceEEEEecc----chHHHHHHHHhhcCceeeEEEEcC--CCCceEEEEee
Q psy13245 6 VLSDALKSINNAEKRGKRQVLIRPCS----KVIVKFLTVMMKHGYIGEFEIVDD--HRAGKIVVNLK 66 (130)
Q Consensus 6 ~iad~lt~IrNa~~~~~~~~v~~p~s----k~~~~il~iL~~eG~I~~~~~~~~--~~~~~i~i~Lk 66 (130)
....+-.-|..|..++.+.| .+-+- .++..+-+.|.+...+.+|...+. +..+-.+|.||
T Consensus 17 A~~~l~~fl~~a~~~g~~~v-~IIHGkG~GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~V~Lk 82 (83)
T 2zqe_A 17 ALLEVDQALEEARALGLSTL-RLLHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALR 82 (83)
T ss_dssp HHHHHHHHHHHHHHTTCSEE-EEECCSTTSHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEE-EEEECCCchHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEEEEEe
Confidence 44556667888988888885 44443 478899999999999999987643 23567888876
No 11
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=30.61 E-value=17 Score=24.86 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=34.0
Q ss_pred chHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceee
Q psy13245 5 NVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGE 49 (130)
Q Consensus 5 d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~ 49 (130)
.++-++|..-+|........ |..--|+++++|.++|.+.+.+-+
T Consensus 55 ~~Lk~vL~~Y~~ELk~~~tS-vPfILSRMNldIS~vL~~n~I~LS 98 (118)
T 2zrr_A 55 ESLRKVLGSYLKKLKNEGTS-VPLVLSRMNIEISNAIKKDGVSLN 98 (118)
T ss_dssp HHHHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHTTTTCCCC
T ss_pred chHHHHHHHHHHHHhcCCCC-chhHHHHhhHHHHHHHHHCCcccC
Confidence 46777888888887665555 455579999999999999987644
No 12
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=30.08 E-value=1.3e+02 Score=20.45 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=47.1
Q ss_pred chHHHHHHHhHhhhhhCCceEEEEe----cc-----chHHHHHHHHhhcCceeeEEEEc--CCCCceEEEEeecc
Q psy13245 5 NVLSDALKSINNAEKRGKRQVLIRP----CS-----KVIVKFLTVMMKHGYIGEFEIVD--DHRAGKIVVNLKGR 68 (130)
Q Consensus 5 d~iad~lt~IrNa~~~~~~~~v~~p----~s-----k~~~~il~iL~~eG~I~~~~~~~--~~~~~~i~i~Lky~ 68 (130)
+....+-.-|..|..++.+.|.++. .| .+...+-+.|.+..++..|.... ++..+-.+|.||-.
T Consensus 59 EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Gat~V~Lr~~ 133 (137)
T 3qd7_X 59 ECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKT 133 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEEEEEEEEch
Confidence 3445566778899988888754443 11 58889999999999999998754 34467789999854
No 13
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=29.24 E-value=34 Score=20.10 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=14.4
Q ss_pred hHHHHHHHHhhcCceee
Q psy13245 33 VIVKFLTVMMKHGYIGE 49 (130)
Q Consensus 33 ~~~~il~iL~~eG~I~~ 49 (130)
....+++.|.++|||..
T Consensus 41 tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 41 TLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCcEec
Confidence 55688999999999865
No 14
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=27.12 E-value=14 Score=24.45 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=32.2
Q ss_pred chHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceee
Q psy13245 5 NVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGE 49 (130)
Q Consensus 5 d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~ 49 (130)
.++-++|..=++........ |..--|+++++|.++|.+.+.+-+
T Consensus 35 ~~Lk~vL~~Y~~EL~~~~tS-vP~ILSRMNldiS~vl~~n~i~Ls 78 (98)
T 2k19_A 35 ESLKKVLENYLEELKQKSAS-VPLILSRMNLDISKAIRNDGVTLS 78 (98)
T ss_dssp SSTHHHHHHHHHHHHSSSSC-HHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred chHHHHHHHHHHHHhcCCCc-chHHHHHhhHHHHHHHHHCCcccC
Confidence 45667777777776644444 445579999999999999987643
No 15
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=25.59 E-value=14 Score=23.59 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=28.4
Q ss_pred cchHHHHHHHhHhhhhhCCceEEEEeccc----hHHHHHHHHhhcCceeeE
Q psy13245 4 VNVLSDALKSINNAEKRGKRQVLIRPCSK----VIVKFLTVMMKHGYIGEF 50 (130)
Q Consensus 4 ~d~iad~lt~IrNa~~~~~~~~v~~p~sk----~~~~il~iL~~eG~I~~~ 50 (130)
+|.+.++|..|.++ .+...+ ....+ .....++.|.++|||.--
T Consensus 7 ~eIi~~IL~~i~~~--~~~t~L--a~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 7 LEIIQAILEACKSG--SPKTRI--MYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHHHHHTTC--BCHHHH--HHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcC--CCHHHH--HHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 47888999999865 333331 22222 234678999999999863
No 16
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=24.34 E-value=71 Score=20.07 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.4
Q ss_pred HHHHHHHHhhcCceeeEEE
Q psy13245 34 IVKFLTVMMKHGYIGEFEI 52 (130)
Q Consensus 34 ~~~il~iL~~eG~I~~~~~ 52 (130)
.-..++.|.++|||+....
T Consensus 45 ls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 45 LTQQLRELEADGVINRIVY 63 (107)
T ss_dssp HHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHCCCEEEeec
Confidence 4467899999999998754
No 17
>1a6s_A GAG polyprotein; core protein, virus structure, membrane binding, viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.61.1.4
Probab=24.30 E-value=26 Score=22.34 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.5
Q ss_pred eccchHHHHHHHHhhcCceeeE
Q psy13245 29 PCSKVIVKFLTVMMKHGYIGEF 50 (130)
Q Consensus 29 p~sk~~~~il~iL~~eG~I~~~ 50 (130)
|..|-.-+.|..|.+||.+.+-
T Consensus 21 pskKeI~a~LslL~kEg~l~sP 42 (87)
T 1a6s_A 21 PSKKEIGAMLSLLQKEGLLMSP 42 (87)
T ss_dssp SCSSHHHHHHHTGGGTTCTTCG
T ss_pred CcHHHHHHHHHHHHHccCcCCh
Confidence 8899999999999999999874
No 18
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=22.28 E-value=85 Score=19.89 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=19.2
Q ss_pred ccchHHHHHHHHhhcCceeeEEEE
Q psy13245 30 CSKVIVKFLTVMMKHGYIGEFEIV 53 (130)
Q Consensus 30 ~sk~~~~il~iL~~eG~I~~~~~~ 53 (130)
.......+|+-|.++|||......
T Consensus 39 ~~~tly~~L~~Le~~GlI~~~~~~ 62 (108)
T 3l7w_A 39 KESTLYPILKKLEKAGYLSTYTQE 62 (108)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CcChHHHHHHHHHHCCCeEEEeec
Confidence 445677899999999999987643
No 19
>4gl6_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS biology; 2.55A {Ruminococcus gnavus}
Probab=22.19 E-value=40 Score=24.74 Aligned_cols=50 Identities=30% Similarity=0.585 Sum_probs=30.3
Q ss_pred ecccchhhhhhC-------ccCCCCceEEEE----ecCCccccHHH------HHHcCCCeEEEEEEC
Q psy13245 81 VPIRHIEKWTNN-------LLPSRQFGYVVL----TTSGGIMDHEE------ARRKHLGGKILGFFF 130 (130)
Q Consensus 81 ~~~~~i~~~~~~-------~~p~~~~Gi~Il----STskGimt~~e------A~~~~vGGevL~~V~ 130 (130)
++..+|.+|.+= .-...-+|.+-+ ||-+|-....| .-+..+||..|+|||
T Consensus 114 i~ieeis~w~ny~~l~nqs~~dyktlgs~wvy~dastm~g~tdeeey~myeev~~~~~ggqal~yvy 180 (247)
T 4gl6_A 114 IPVEEISQWKNYVDLCNQSNSDYKTLGSAWVYIDASTMKGKTDEEEYQMYEEVYRDKLGGQALLYVY 180 (247)
T ss_dssp SCHHHHTSHHHHHHHHBSCSSSBCCCEEEEEEEEGGGBCCCCHHHHHHHHHHHHHHTTCSCEEEEEE
T ss_pred CCHHHHHHHHhHHHHHccCCcchhccceEEEEEecccccCCccHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 455677777651 111245663332 45567554433 346899999999997
No 20
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=21.37 E-value=1.3e+02 Score=19.40 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=19.4
Q ss_pred eccchHHHHHHHHhhcCceeeEEE
Q psy13245 29 PCSKVIVKFLTVMMKHGYIGEFEI 52 (130)
Q Consensus 29 p~sk~~~~il~iL~~eG~I~~~~~ 52 (130)
+.......+|+-|.++|||+....
T Consensus 45 i~~gtly~~L~rLe~~GlI~~~~~ 68 (116)
T 3f8b_A 45 LNEATLYTIFKRLEKDGIISSYWG 68 (116)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCcchHHHHHHHHHHCCCEEEEee
Confidence 345567799999999999998754
No 21
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=20.96 E-value=80 Score=20.00 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=15.9
Q ss_pred hHHHHHHHHhhcCceeeEEE
Q psy13245 33 VIVKFLTVMMKHGYIGEFEI 52 (130)
Q Consensus 33 ~~~~il~iL~~eG~I~~~~~ 52 (130)
..-..++.|.+.|||....-
T Consensus 52 tvs~~L~~Le~~GlI~r~~~ 71 (112)
T 1z7u_A 52 VLTDRLREMEKDGLVHRESF 71 (112)
T ss_dssp HHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEeec
Confidence 34477899999999998754
No 22
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=20.58 E-value=94 Score=19.42 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=15.5
Q ss_pred hHHHHHHHHhhcCceeeEEE
Q psy13245 33 VIVKFLTVMMKHGYIGEFEI 52 (130)
Q Consensus 33 ~~~~il~iL~~eG~I~~~~~ 52 (130)
..-..++.|.+.|+|+....
T Consensus 55 ~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 55 MLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp HHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEeec
Confidence 34477899999999997543
No 23
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=20.55 E-value=1.5e+02 Score=20.07 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=19.5
Q ss_pred eccchHHHHHHHHhhcCceeeEEEE
Q psy13245 29 PCSKVIVKFLTVMMKHGYIGEFEIV 53 (130)
Q Consensus 29 p~sk~~~~il~iL~~eG~I~~~~~~ 53 (130)
+........|+-|.++|||......
T Consensus 74 is~gtLy~~L~rLE~~GlI~~~~~~ 98 (145)
T 1xma_A 74 IKETTLYSAFARLEKNGYIKSYYGE 98 (145)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cChhHHHHHHHHHHHCCCEEEEEec
Confidence 3445667889999999999987654
No 24
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=20.22 E-value=1e+02 Score=18.38 Aligned_cols=19 Identities=11% Similarity=0.501 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcCceeeEEE
Q psy13245 34 IVKFLTVMMKHGYIGEFEI 52 (130)
Q Consensus 34 ~~~il~iL~~eG~I~~~~~ 52 (130)
....++.|.++|||.....
T Consensus 47 vs~~l~~L~~~gli~~~~~ 65 (100)
T 1ub9_A 47 LDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp HHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEec
Confidence 4467899999999997653
Done!