RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13245
         (130 letters)



>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 129

 Score =  141 bits (357), Expect = 3e-45
 Identities = 58/126 (46%), Positives = 87/126 (69%)

Query: 5   NVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 64
           + L++AL  I+N E+ GK+ V I+P SK+I + L VM  +GYIGEFE ++D RAG   V 
Sbjct: 4   DPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVE 63

Query: 65  LKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGK 124
           L G++NKCG I PRF V     EK+    LP+R FG ++++T+ G+M HEEA+++ LGG+
Sbjct: 64  LIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGR 123

Query: 125 ILGFFF 130
           +L + +
Sbjct: 124 LLAYVY 129


>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 130

 Score =  108 bits (271), Expect = 3e-32
 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 7   LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLK 66
           ++D L +I NA      ++ + P SK+  +   ++ + G+I ++E ++D++ G + + LK
Sbjct: 6   IADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLK 64

Query: 67  GRLNKCGVISPRFDVP---IRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGG 123
                  VI+    +    +R   K           G  +L+TS G++  +EAR+K  GG
Sbjct: 65  YG-PNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGG 123

Query: 124 KILGFFF 130
           +I+ +  
Sbjct: 124 EIIAYVI 130


>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score =  100 bits (249), Expect = 6e-29
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 7   LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLK 66
           ++D L  I N +   K  V + P SK+ V    V+ + G+I +F++  D +  ++ + LK
Sbjct: 4   IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTK-PELELTLK 61

Query: 67  GRLNKCGVISPRFDVP---IRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGG 123
               K  V+     V    +R  ++           G  V++TS G+M    AR+  LGG
Sbjct: 62  YFQGKA-VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGG 120

Query: 124 KILGF 128
           +I+ +
Sbjct: 121 EIICY 125


>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus
           [TaxId: 274]}
          Length = 136

 Score = 93.9 bits (233), Expect = 2e-26
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 13/135 (9%)

Query: 7   LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLK 66
           ++D L  I NA +  K    + P S+   + L ++ + G+I  +E VD      + V LK
Sbjct: 4   IADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLK 62

Query: 67  GRLNKCGVISPRFDVPIRHIEKWTNNLLPS-----------RQFGYVVLTTSGGIMDHEE 115
               + G   PR +  I HI + +                 R  G  +L+TS G++   E
Sbjct: 63  YGPRRQGP-DPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDRE 121

Query: 116 ARRKHLGGKILGFFF 130
           AR+  +GG+++   +
Sbjct: 122 ARKLGVGGELICEVW 136


>d1ihma_ b.121.4.3 (A:) Calicivirus capsid protein {Norwalk virus
           [TaxId: 11983]}
          Length = 492

 Score = 27.5 bits (61), Expect = 0.49
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 75  ISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILG 127
            +  F +P   +   +N+  P       + +         +  R  L G+++G
Sbjct: 199 KTRPFTLPNLPLSSLSNSRAPLPISSMGI-SPDNVQSVQFQNGRCTLDGRLVG 250


>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 107

 Score = 25.9 bits (57), Expect = 0.89
 Identities = 10/55 (18%), Positives = 21/55 (38%)

Query: 4  VNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRA 58
           ++L+   K I  +   G   + +    ++    +  + KH       +  DHRA
Sbjct: 34 QDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFRSGIVPSDHRA 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.429 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,084
Number of extensions: 23675
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 12
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.5 bits)