Query psy13246
Match_columns 81
No_of_seqs 115 out of 849
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 23:51:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_W 40S ribosomal protein S 100.0 9.2E-29 3.1E-33 167.1 7.5 75 1-75 1-81 (130)
2 2xzm_H Ribosomal protein S8 co 100.0 1.2E-28 4.2E-33 166.5 7.3 75 1-75 1-81 (130)
3 1i6u_A 30S ribosomal protein S 100.0 1.8E-28 6E-33 165.7 7.7 74 1-75 1-81 (130)
4 1sei_A Ribosomal protein S8; p 99.9 1.6E-25 5.5E-30 151.3 7.2 60 3-63 2-61 (130)
5 3bbn_H Ribosomal protein S8; s 99.9 4.4E-25 1.5E-29 150.0 8.2 67 3-71 2-74 (134)
6 2vqe_H 30S ribosomal protein S 99.9 5.9E-25 2E-29 149.9 6.4 69 2-71 1-82 (138)
7 1s03_H 30S ribosomal protein S 99.9 1.2E-24 4.1E-29 146.8 7.3 67 3-71 2-73 (129)
8 3rf2_A 30S ribosomal protein S 99.9 2.5E-23 8.6E-28 146.1 5.5 55 1-56 1-55 (168)
9 2hgc_A YJCQ protein; SR346, st 82.4 0.47 1.6E-05 30.4 1.2 23 33-55 32-54 (102)
10 2zqe_A MUTS2 protein; alpha/be 74.8 11 0.00037 22.4 5.8 60 4-63 15-79 (83)
11 3qd7_X Uncharacterized protein 63.0 28 0.00097 22.6 6.7 60 4-63 58-128 (137)
12 2hzt_A Putative HTH-type trans 61.0 11 0.00037 22.6 3.7 37 31-68 42-78 (107)
13 1ub9_A Hypothetical protein PH 57.3 15 0.0005 20.8 3.7 31 32-62 45-75 (100)
14 2a40_C Wiskott-aldrich syndrom 56.5 4.4 0.00015 20.9 1.1 18 4-21 2-19 (32)
15 1z7u_A Hypothetical protein EF 50.0 18 0.00061 21.7 3.4 37 31-68 50-86 (112)
16 2fsw_A PG_0823 protein; alpha- 49.6 21 0.00073 21.1 3.7 37 31-68 53-89 (107)
17 3l7w_A Putative uncharacterize 46.6 23 0.00079 21.3 3.5 29 29-57 38-66 (108)
18 2qvo_A Uncharacterized protein 46.4 23 0.00079 20.5 3.4 28 32-62 45-72 (95)
19 2dql_A PEX protein; circadian 46.2 28 0.00097 21.4 3.9 26 28-53 53-78 (115)
20 2e1n_A PEX, period extender; c 44.4 37 0.0013 21.8 4.4 40 28-68 65-107 (138)
21 1r7j_A Conserved hypothetical 43.6 11 0.00037 22.7 1.6 44 3-48 6-51 (95)
22 2heo_A Z-DNA binding protein 1 41.8 14 0.00048 20.7 1.8 19 31-49 39-57 (67)
23 1a6s_A GAG polyprotein; core p 39.7 12 0.0004 23.3 1.3 24 28-51 20-43 (87)
24 1sfx_A Conserved hypothetical 39.4 50 0.0017 18.4 4.1 29 31-60 48-76 (109)
25 2p5v_A Transcriptional regulat 38.4 31 0.0011 21.8 3.3 26 31-56 38-63 (162)
26 1yyv_A Putative transcriptiona 38.2 33 0.0011 21.4 3.4 29 30-58 62-90 (131)
27 2cfx_A HTH-type transcriptiona 37.8 33 0.0011 21.3 3.3 26 31-56 33-58 (144)
28 3f8b_A Transcriptional regulat 36.8 44 0.0015 20.4 3.7 24 29-52 45-68 (116)
29 2pg4_A Uncharacterized protein 36.7 29 0.00098 19.9 2.7 27 34-62 48-74 (95)
30 1xma_A Predicted transcription 36.5 45 0.0016 21.3 3.9 25 29-53 74-98 (145)
31 3oop_A LIN2960 protein; protei 36.3 28 0.00095 20.9 2.7 30 33-62 67-96 (143)
32 3mio_A DHBP synthase, 3,4-dihy 36.0 41 0.0014 23.6 3.8 48 1-48 1-58 (206)
33 2fbi_A Probable transcriptiona 35.5 24 0.00081 20.9 2.2 26 33-58 66-91 (142)
34 2w25_A Probable transcriptiona 35.2 38 0.0013 21.0 3.3 26 32-57 36-61 (150)
35 2co5_A Viral protein F93; vira 34.8 39 0.0013 20.5 3.2 24 28-51 41-64 (99)
36 3ri2_A Transcriptional regulat 34.8 46 0.0016 20.8 3.6 29 28-56 49-77 (123)
37 3bro_A Transcriptional regulat 34.8 28 0.00096 20.6 2.5 29 33-61 66-94 (141)
38 3bja_A Transcriptional regulat 34.7 28 0.00097 20.5 2.5 30 33-62 63-92 (139)
39 3hsr_A HTH-type transcriptiona 33.3 30 0.001 20.8 2.5 30 33-62 66-95 (140)
40 3tgn_A ADC operon repressor AD 33.2 21 0.00073 21.4 1.8 35 33-68 67-101 (146)
41 3cjn_A Transcriptional regulat 33.2 35 0.0012 20.9 2.8 30 33-62 82-111 (162)
42 3bdd_A Regulatory protein MARR 33.0 39 0.0013 19.9 2.9 31 32-62 60-90 (142)
43 3eco_A MEPR; mutlidrug efflux 32.7 31 0.001 20.5 2.4 31 32-62 62-92 (139)
44 2nnn_A Probable transcriptiona 32.6 28 0.00096 20.5 2.2 20 32-51 67-86 (140)
45 2pex_A Transcriptional regulat 31.8 33 0.0011 20.8 2.5 31 32-62 76-106 (153)
46 3elk_A Putative transcriptiona 31.7 23 0.00078 21.9 1.7 23 31-53 47-69 (117)
47 3fau_A NEDD4-binding protein 2 31.6 75 0.0026 18.1 4.9 52 7-63 14-79 (82)
48 2hr3_A Probable transcriptiona 31.6 34 0.0012 20.4 2.5 30 33-62 66-95 (147)
49 4esb_A Transcriptional regulat 31.6 44 0.0015 20.5 3.1 26 29-54 40-65 (115)
50 3bpv_A Transcriptional regulat 31.5 30 0.001 20.4 2.2 26 32-57 58-83 (138)
51 2cg4_A Regulatory protein ASNC 31.1 39 0.0014 21.0 2.8 25 31-55 36-60 (152)
52 3k0l_A Repressor protein; heli 31.0 38 0.0013 20.9 2.7 29 34-62 77-105 (162)
53 1jgs_A Multiple antibiotic res 30.8 42 0.0014 19.8 2.8 30 33-62 64-93 (138)
54 2htj_A P fimbrial regulatory p 30.6 40 0.0014 18.9 2.6 19 32-50 29-47 (81)
55 2gxg_A 146AA long hypothetical 30.6 36 0.0012 20.2 2.5 30 33-62 66-95 (146)
56 1lj9_A Transcriptional regulat 30.4 45 0.0015 19.8 2.9 31 32-62 58-88 (144)
57 2dk5_A DNA-directed RNA polyme 30.2 36 0.0012 20.4 2.4 27 31-57 50-76 (91)
58 2rdp_A Putative transcriptiona 30.2 35 0.0012 20.5 2.4 30 33-62 72-101 (150)
59 4hbl_A Transcriptional regulat 29.9 34 0.0012 20.8 2.3 31 32-62 70-100 (149)
60 3bj6_A Transcriptional regulat 29.6 32 0.0011 20.7 2.1 30 33-62 70-99 (152)
61 2nyx_A Probable transcriptiona 29.6 37 0.0013 21.2 2.5 30 33-62 75-104 (168)
62 3cdh_A Transcriptional regulat 29.3 30 0.001 21.0 2.0 30 33-62 73-102 (155)
63 1s3j_A YUSO protein; structura 29.1 39 0.0013 20.4 2.5 30 33-62 67-96 (155)
64 2fbh_A Transcriptional regulat 29.1 36 0.0012 20.2 2.3 30 33-62 68-97 (146)
65 3e6m_A MARR family transcripti 28.9 40 0.0014 20.8 2.5 30 33-62 83-112 (161)
66 2bv6_A MGRA, HTH-type transcri 28.6 41 0.0014 20.0 2.5 29 33-61 67-95 (142)
67 2esh_A Conserved hypothetical 28.5 46 0.0016 20.2 2.8 22 32-53 50-71 (118)
68 2zfw_A PEX; five alpha-helices 28.5 56 0.0019 21.3 3.3 40 28-68 75-117 (148)
69 2eth_A Transcriptional regulat 28.5 38 0.0013 20.6 2.4 30 33-62 74-103 (154)
70 3boq_A Transcriptional regulat 28.0 35 0.0012 20.8 2.1 29 34-62 79-107 (160)
71 2dbb_A Putative HTH-type trans 27.9 51 0.0018 20.3 3.0 25 32-56 38-62 (151)
72 2frh_A SARA, staphylococcal ac 27.9 35 0.0012 20.6 2.1 30 33-62 69-98 (127)
73 2a61_A Transcriptional regulat 27.8 38 0.0013 20.1 2.2 25 33-57 63-87 (145)
74 3hhh_A Transcriptional regulat 27.2 61 0.0021 19.9 3.2 26 29-54 44-69 (116)
75 4esf_A PADR-like transcription 27.0 42 0.0014 20.7 2.4 25 29-53 42-66 (117)
76 3ech_A MEXR, multidrug resista 26.8 32 0.0011 20.7 1.8 29 33-61 67-95 (142)
77 2f2e_A PA1607; transcription f 26.8 53 0.0018 20.7 2.9 22 31-52 51-72 (146)
78 1i1g_A Transcriptional regulat 26.7 35 0.0012 20.7 2.0 24 31-54 32-55 (141)
79 2ia0_A Putative HTH-type trans 26.6 59 0.002 21.0 3.2 25 31-55 45-69 (171)
80 3r0a_A Putative transcriptiona 26.6 72 0.0024 19.4 3.4 27 31-57 56-82 (123)
81 1l3i_A Precorrin-6Y methyltran 26.4 1.1E+02 0.0038 18.4 4.6 40 7-46 113-152 (192)
82 3u2r_A Regulatory protein MARR 26.3 40 0.0014 20.9 2.2 29 33-61 78-106 (168)
83 3f3x_A Transcriptional regulat 26.3 41 0.0014 20.1 2.2 26 33-58 66-91 (144)
84 1z91_A Organic hydroperoxide r 26.1 35 0.0012 20.4 1.8 31 32-62 69-99 (147)
85 2qww_A Transcriptional regulat 25.4 52 0.0018 19.8 2.6 30 33-62 71-102 (154)
86 2pn6_A ST1022, 150AA long hypo 25.3 40 0.0014 20.8 2.1 23 31-53 31-53 (150)
87 3s2w_A Transcriptional regulat 25.2 48 0.0016 20.3 2.4 30 33-62 80-109 (159)
88 3nrv_A Putative transcriptiona 24.6 40 0.0014 20.2 1.9 30 33-62 70-99 (148)
89 2fa5_A Transcriptional regulat 24.6 38 0.0013 20.7 1.8 29 33-61 79-107 (162)
90 3deu_A Transcriptional regulat 24.4 50 0.0017 20.7 2.5 31 32-62 83-113 (166)
91 3fm5_A Transcriptional regulat 24.2 37 0.0013 20.6 1.7 31 32-62 69-99 (150)
92 2cr5_A Reproduction 8; UBX dom 23.9 53 0.0018 20.0 2.4 57 21-77 33-95 (109)
93 3jw4_A Transcriptional regulat 22.9 31 0.0011 20.8 1.2 26 33-58 73-98 (148)
94 3g3z_A NMB1585, transcriptiona 22.9 38 0.0013 20.3 1.6 30 33-62 61-90 (145)
95 2y75_A HTH-type transcriptiona 22.8 43 0.0015 20.3 1.8 20 31-50 40-59 (129)
96 1y43_A Aspergillopepsin II lig 22.8 17 0.00057 19.4 -0.1 15 65-79 6-21 (39)
97 4aik_A Transcriptional regulat 22.7 59 0.002 20.2 2.5 36 32-68 61-96 (151)
98 2kxh_B Peptide of FAR upstream 22.4 56 0.0019 16.6 1.9 15 2-16 5-19 (31)
99 2cyy_A Putative HTH-type trans 22.4 43 0.0015 20.9 1.8 25 31-55 35-59 (151)
100 4b8x_A SCO5413, possible MARR- 22.0 59 0.002 20.0 2.4 30 33-62 67-96 (147)
101 3eof_A Putative oxidoreductase 22.0 61 0.0021 22.3 2.6 35 5-48 214-248 (248)
102 3nqo_A MARR-family transcripti 21.8 75 0.0026 20.3 2.9 31 32-62 72-102 (189)
103 1q1h_A TFE, transcription fact 21.7 71 0.0024 18.6 2.6 21 32-52 48-68 (110)
104 2yu3_A DNA-directed RNA polyme 21.0 40 0.0014 20.8 1.4 25 31-55 67-91 (95)
105 3k69_A Putative transcription 20.5 44 0.0015 21.7 1.6 20 31-50 42-61 (162)
106 3e05_A Precorrin-6Y C5,15-meth 20.2 1.7E+02 0.0058 18.3 5.9 44 7-52 121-164 (204)
No 1
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h
Probab=99.95 E-value=9.2e-29 Score=167.07 Aligned_cols=75 Identities=55% Similarity=0.724 Sum_probs=70.0
Q ss_pred CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Cccccc
Q psy13246 1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNPI 74 (81)
Q Consensus 1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~~ 74 (81)
|+.+|+||||||+||||++++|++|.+.|+||++.+||++|++||||++|++++|++++++.| +|+|| |+||+-
T Consensus 1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~r~~k~~~ISpR~y 80 (130)
T 3u5c_W 1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFN 80 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHTTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCB
T ss_pred CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHHCCCccceeeeccCCCceEEEEEccccCCCCeEEccee
Confidence 888999999999999999999999985599999999999999999999999999999999988 89999 999975
Q ss_pred e
Q psy13246 75 I 75 (81)
Q Consensus 75 ~ 75 (81)
.
T Consensus 81 ~ 81 (130)
T 3u5c_W 81 V 81 (130)
T ss_dssp C
T ss_pred c
Confidence 4
No 2
>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H
Probab=99.95 E-value=1.2e-28 Score=166.53 Aligned_cols=75 Identities=48% Similarity=0.693 Sum_probs=69.1
Q ss_pred CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Cccccc
Q psy13246 1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNPI 74 (81)
Q Consensus 1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~~ 74 (81)
|+++||||||||+||||++++|++|.+.|+||++.+||++|++||||++|+++++++++++.| ||+|+ |+||+-
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~y 80 (130)
T 2xzm_H 1 MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKKVVVELIGRINKCGVISPRYD 80 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHTSSCCEEEECCSSSCEEEEECCSCCCCEEECTTCCB
T ss_pred CCccCHHHHHHHHhHHHHHcCCCEEEEEcchHHHHHHHHHHHHCCCcceEEEEecCCceEEEEEEecccccCcEEECcee
Confidence 888999999999999999999999983399999999999999999999999999888888888 99999 999975
Q ss_pred e
Q psy13246 75 I 75 (81)
Q Consensus 75 ~ 75 (81)
.
T Consensus 81 ~ 81 (130)
T 2xzm_H 81 V 81 (130)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1
Probab=99.95 E-value=1.8e-28 Score=165.68 Aligned_cols=74 Identities=36% Similarity=0.499 Sum_probs=69.0
Q ss_pred CCccchHHHHHHHhhhHhhcCCceEEEE-echHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Ccccc
Q psy13246 1 MVRVNVLSDALKSINNAEKRGKRQVLIR-PCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNP 73 (81)
Q Consensus 1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~-p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~ 73 (81)
|+++||||||||+||||++++|++|. + |+||++.+||++|++||||++|+++++++++++.| ||+|+ |+||+
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~V~-i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~ 79 (130)
T 1i6u_A 1 MSLMDPLANALNHISNCERVGKKVVY-IKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRF 79 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEE-ESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCC
T ss_pred CCccCHHHHHHHHhHHHHHcCCCEEE-EECchHHHHHHHHHHHHCCccccEEEEecCCceEEEEEEeeecccCCEEECCe
Confidence 88899999999999999999999998 6 99999999999999999999999998888888888 99999 99997
Q ss_pred ce
Q psy13246 74 II 75 (81)
Q Consensus 74 ~~ 75 (81)
-.
T Consensus 80 y~ 81 (130)
T 1i6u_A 80 PV 81 (130)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 4
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=99.92 E-value=1.6e-25 Score=151.28 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=57.1
Q ss_pred ccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE
Q psy13246 3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM 63 (81)
Q Consensus 3 ~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V 63 (81)
++||||||||+||||++++|++|. +|+||++.+||++|++||||++|+++++++++.+.|
T Consensus 2 ~~d~iad~lt~IrNA~~~~~~~v~-iP~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v 61 (130)
T 1sei_A 2 MTDPIADMLTAIRNANMVRHEKLE-VPASKIKREIAEILKREGFIRDYEYIEDNKQGILRI 61 (130)
T ss_dssp CSHHHHHHHHHHHHHHHTTCSEEE-EECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEE
T ss_pred ccChHHHHHHHhHHHHHcCCCEEE-ecCcHHHHHHHHHHHHCCCceeEEEEecCCccEEEE
Confidence 589999999999999999999998 799999999999999999999999988887788887
No 5
>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.92 E-value=4.4e-25 Score=149.96 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=63.0
Q ss_pred ccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcC-CccceEEE----EecCC-Ccc
Q psy13246 3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILG-IRTTVYCM----INWSG-IKP 71 (81)
Q Consensus 3 ~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~-~~~~~i~V----in~~g-i~p 71 (81)
++||||||||+||||++++|++|. +|+||++.+||++|++||||++|+++++ ++ +++.| .|+|+ |+|
T Consensus 2 ~~d~iad~lt~IrNA~~~~k~~V~-iP~Sk~~~~il~iL~~eGyI~~~~~~~~~~~-~~i~v~Lky~~~~~vI~p 74 (134)
T 3bbn_H 2 GKDTIADIITCIRNADMNRKGTVR-IVSTNITENIVKILLREGFIENARKHQERNK-YFLVLTLRHRRNKKGPYL 74 (134)
T ss_dssp CSCHHHHHHHHHHHHHHTTCSEEE-EECCHHHHHHTHHHHTTTSSSCEEEEESSSC-EEEEEECCBCCCSSSCCB
T ss_pred cccHHHHHHHHhHHHHHcCCCEEE-EeCcHHHHHHHHHHHHCCcceeEEEEecCCC-cEEEEEEecCCCCceeec
Confidence 489999999999999999999998 7999999999999999999999999888 77 78888 78999 997
No 6
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...
Probab=99.91 E-value=5.9e-25 Score=149.93 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=63.5
Q ss_pred CccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----Eec-------CC-
Q psy13246 2 VRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INW-------SG- 68 (81)
Q Consensus 2 ~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~-------~g- 68 (81)
.++||||||||+||||++++|++|. +|+||++.+||++|++||||++|++.++++++.+.| .|+ |+
T Consensus 1 m~~d~iad~ltrIrNA~~~~k~~V~-iP~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~~~~~~~~~~~v 79 (138)
T 2vqe_H 1 MLTDPIADMLTRIRNATRVYKESTD-VPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQV 79 (138)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCSCCC-CBCCHHHHHHHHHHHHTTSSSEEEEEEETTEEEEEEECCBCCCCSSSCCCCCBS
T ss_pred CccchHHHHHHHhHHHHHcCCCEEE-ecCcHHHHHHHHHHHHcCcceeEEEEecCCceEEEEEEecCcCCccccccCCcc
Confidence 1489999999999999999999998 899999999999999999999999988887788888 677 99
Q ss_pred Ccc
Q psy13246 69 IKP 71 (81)
Q Consensus 69 i~p 71 (81)
|+|
T Consensus 80 I~~ 82 (138)
T 2vqe_H 80 IHH 82 (138)
T ss_dssp CSC
T ss_pred ccc
Confidence 886
No 7
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...
Probab=99.91 E-value=1.2e-24 Score=146.81 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=59.2
Q ss_pred ccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE----EecCC-Ccc
Q psy13246 3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM----INWSG-IKP 71 (81)
Q Consensus 3 ~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V----in~~g-i~p 71 (81)
++||||||||+||||++++|++|. +|+||++.+||++|++||||++|++ ++++++.+.| .|+|+ |+|
T Consensus 2 ~~d~iad~lt~IrNA~~~~~~~v~-iP~Sk~~~~il~iL~~eGyI~~~~~-~~~~~~~i~v~Lky~~~~~vI~~ 73 (129)
T 1s03_H 2 MQDPIADMLTRIRNGQAANKAAVT-MPSSKLKVAIANVLKEEGFIEDFKV-EGDTKPELELTLKYFQGKAVVES 73 (129)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEE-EECCHHHHHHHHHHHHTTSEEEEEE-ECSSSCEEEEEECBSSSSBSCSC
T ss_pred CcChHHHHHHHhHHHHHcCCCEEE-EeCcHHHHHHHHHHHHCCcceeEEE-cCCCceEEEEEEecCCCCccccc
Confidence 589999999999999999999998 7999999999999999999999998 6777778888 45555 554
No 8
>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus}
Probab=99.88 E-value=2.5e-23 Score=146.05 Aligned_cols=55 Identities=27% Similarity=0.361 Sum_probs=50.3
Q ss_pred CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCC
Q psy13246 1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGI 56 (81)
Q Consensus 1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~ 56 (81)
|+++||||||||+||||++++|.+|. +|+||++.+|+++|++||||++|++.+++
T Consensus 1 m~~~d~iad~lt~IrNA~~ar~~~v~-iP~Skl~~~i~~iL~~eGyI~~~~~~~~~ 55 (168)
T 3rf2_A 1 MSAVDPIADMFSAIKNAIMRRDDFLY-VPSSKLKERILDVLKKEGFIQDWEALKGE 55 (168)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEE-EECCHHHHHHHHHHHHHTSEEEEEECCHH
T ss_pred CCcccHHHHHHHHHHHHHHcCCCEEE-ecccHHHHHHHHHHHHCCCccceEEecCC
Confidence 88899999999999999999999998 89999999999999999999999998776
No 9
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=82.41 E-value=0.47 Score=30.35 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhcCccCceEEEcC
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILG 55 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~ 55 (81)
.-..+++.|+++|||.+..+.++
T Consensus 32 ~~~~il~~L~d~GyI~Gv~~~~~ 54 (102)
T 2hgc_A 32 QFDDAVNFLKREGYIIGVHYSDD 54 (102)
T ss_dssp HHHHHHHHHHHHTSEECCEESSS
T ss_pred HHHHHHHHHHHCCCccceEEEeC
Confidence 34679999999999999988766
No 10
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=74.83 E-value=11 Score=22.43 Aligned_cols=60 Identities=7% Similarity=0.019 Sum_probs=45.8
Q ss_pred cchHHHHHHHhhhHhhcCCceEEEEe---chHHHHHHHHHHhhcCccCceEEEc--CCccceEEE
Q psy13246 4 VNVLSDALKSINNAEKRGKRQVLIRP---CSKVIVKFLTVMMKHGKLPEVFVIL--GIRTTVYCM 63 (81)
Q Consensus 4 ~D~iaD~LtrIrNA~~a~k~~V~~~p---~Skl~~~il~IL~~eGYI~~~~~~~--~~~~~~i~V 63 (81)
-+....+-.-|..|..+|.+.|.++. ...++..+-+.|.+..++..|..-+ +++.|...|
T Consensus 15 ~eA~~~l~~fl~~a~~~g~~~v~IIHGkG~GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~V 79 (83)
T 2zqe_A 15 AEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCSTTSHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEEE
Confidence 35566677788999999999998655 3458999999999999999998765 333454433
No 11
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=62.98 E-value=28 Score=22.59 Aligned_cols=60 Identities=15% Similarity=0.034 Sum_probs=46.7
Q ss_pred cchHHHHHHHhhhHhhcCCceEEEEe----ch-----HHHHHHHHHHhhcCccCceEEEc--CCccceEEE
Q psy13246 4 VNVLSDALKSINNAEKRGKRQVLIRP----CS-----KVIVKFLTVMMKHGKLPEVFVIL--GIRTTVYCM 63 (81)
Q Consensus 4 ~D~iaD~LtrIrNA~~a~k~~V~~~p----~S-----kl~~~il~IL~~eGYI~~~~~~~--~~~~~~i~V 63 (81)
-+....+..-|..|..+|.+.|.++. .| .++..+-+.|.+..++..|+... +++.|..-|
T Consensus 58 ~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Gat~V 128 (137)
T 3qd7_X 58 EECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYV 128 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEEEEE
Confidence 35566677888999999999998664 12 79999999999999999998754 444555544
No 12
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=61.04 E-value=11 Score=22.59 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcCCccceEEEEecCC
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSG 68 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~Vin~~g 68 (81)
....-..++.|+++|||......+|.+...+. +..-|
T Consensus 42 ~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~-LT~~G 78 (107)
T 2hzt_A 42 QKMLTQQLRELEADGVINRIVYNQVPPKVEYE-LSEYG 78 (107)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE-ECTTG
T ss_pred HHHHHHHHHHHHHCCCEEEeecCCCCCeEEEE-ECccH
Confidence 45567789999999999987654444433333 55555
No 13
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=57.25 E-value=15 Score=20.84 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
......++.|.++|||......++++...+.
T Consensus 45 ~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~ 75 (100)
T 1ub9_A 45 GNLDSHIRVLERNGLVKTYKVIADRPRTVVE 75 (100)
T ss_dssp HHHHHHHHHHHHTTSEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCcceEEEE
Confidence 3466779999999999976544444443343
No 14
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=56.55 E-value=4.4 Score=20.86 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.1
Q ss_pred cchHHHHHHHhhhHhhcC
Q psy13246 4 VNVLSDALKSINNAEKRG 21 (81)
Q Consensus 4 ~D~iaD~LtrIrNA~~a~ 21 (81)
.|+-+|+|..||-+..-+
T Consensus 2 ~d~RsdLL~~Ir~G~~Lk 19 (32)
T 2a40_C 2 SDARSDLLSAIRQGFQLR 19 (32)
T ss_dssp CCHHHHHHHHHHHCCCCB
T ss_pred cccHHHHHHHHHccCCcC
Confidence 699999999999986443
No 15
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=49.99 E-value=18 Score=21.74 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcCCccceEEEEecCC
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSG 68 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~Vin~~g 68 (81)
....-..++.|.++|||......+|.+...+. +..-|
T Consensus 50 ~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~-LT~~G 86 (112)
T 1z7u_A 50 QRVLTDRLREMEKDGLVHRESFNELPPRVEYT-LTPEG 86 (112)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEECCSSCEEEEE-ECHHH
T ss_pred HHHHHHHHHHHHHCCCEEEeecCCCCCeEEEE-ECHhH
Confidence 45567789999999999987654454443333 44333
No 16
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=49.65 E-value=21 Score=21.13 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcCCccceEEEEecCC
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSG 68 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~Vin~~g 68 (81)
....-..|+.|+++|||.....-+|.+...+. ++.-|
T Consensus 53 ~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~-LT~~G 89 (107)
T 2fsw_A 53 EKMLIDELKFLCGKGLIKKKQYPEVPPRVEYS-LTPLG 89 (107)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE-ECHHH
T ss_pred HHHHHHHHHHHHHCCCEEEeecCCCCCeeEEE-ECccH
Confidence 45677789999999999976543344333333 44444
No 17
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=46.59 E-value=23 Score=21.29 Aligned_cols=29 Identities=17% Similarity=0.016 Sum_probs=22.7
Q ss_pred echHHHHHHHHHHhhcCccCceEEEcCCc
Q psy13246 29 PCSKVIVKFLTVMMKHGKLPEVFVILGIR 57 (81)
Q Consensus 29 p~Skl~~~il~IL~~eGYI~~~~~~~~~~ 57 (81)
......-.+|+-|.++|||.......+++
T Consensus 38 i~~~tly~~L~~Le~~GlI~~~~~~~~~r 66 (108)
T 3l7w_A 38 IKESTLYPILKKLEKAGYLSTYTQEHQGR 66 (108)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEEETTE
T ss_pred CCcChHHHHHHHHHHCCCeEEEeecCCCC
Confidence 45677889999999999999886544443
No 18
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=46.37 E-value=23 Score=20.46 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
...-.+++-|.+.||| ...+|++...+.
T Consensus 45 ~tvs~~l~~Le~~Glv---~~~~d~R~~~v~ 72 (95)
T 2qvo_A 45 SYVWLIIKKFEEAKMV---ECELEGRTKIIR 72 (95)
T ss_dssp HHHHHHHHHHHHTTSE---EEEEETTEEEEE
T ss_pred HHHHHHHHHHHHCcCc---cCCCCCCeEEEE
Confidence 3456788999999999 333455544444
No 19
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=46.24 E-value=28 Score=21.37 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=22.1
Q ss_pred EechHHHHHHHHHHhhcCccCceEEE
Q psy13246 28 RPCSKVIVKFLTVMMKHGKLPEVFVI 53 (81)
Q Consensus 28 ~p~Skl~~~il~IL~~eGYI~~~~~~ 53 (81)
.+.....-..|+-|.++|||......
T Consensus 53 ~is~gtLY~~L~rLe~~GlI~~~~~~ 78 (115)
T 2dql_A 53 RLSDTVLYSAIKFLEDNRAITGYWKK 78 (115)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeee
Confidence 35678889999999999999988654
No 20
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=44.36 E-value=37 Score=21.77 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=27.9
Q ss_pred EechHHHHHHHHHHhhcCccCceEEEc--CCc-cceEEEEecCC
Q psy13246 28 RPCSKVIVKFLTVMMKHGKLPEVFVIL--GIR-TTVYCMINWSG 68 (81)
Q Consensus 28 ~p~Skl~~~il~IL~~eGYI~~~~~~~--~~~-~~~i~Vin~~g 68 (81)
.+.....-..|+-|.++|||..+...+ +++ ...++ |..-|
T Consensus 65 ~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~-LT~~G 107 (138)
T 2e1n_A 65 RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQ-LAQAN 107 (138)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEE-ESCSC
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEE-ECHHH
Confidence 356788889999999999999987643 222 23334 66655
No 21
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=43.62 E-value=11 Score=22.71 Aligned_cols=44 Identities=7% Similarity=0.277 Sum_probs=30.3
Q ss_pred ccchHHHHHHHhhhHhhcCCceEE--EEechHHHHHHHHHHhhcCccC
Q psy13246 3 RVNVLSDALKSINNAEKRGKRQVL--IRPCSKVIVKFLTVMMKHGKLP 48 (81)
Q Consensus 3 ~~D~iaD~LtrIrNA~~a~k~~V~--~~p~Skl~~~il~IL~~eGYI~ 48 (81)
.+|.+.|.|..|.++ .+...+. +-=........++.|++.|||.
T Consensus 6 ~~eIi~~IL~~i~~~--~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~ 51 (95)
T 1r7j_A 6 KLEIIQAILEACKSG--SPKTRIMYGANLSYALTGRYIKMLMDLEIIR 51 (95)
T ss_dssp HHHHHHHHHHHHTTC--BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 368899999999865 4444331 0011345678899999999996
No 22
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=41.79 E-value=14 Score=20.66 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhhcCccCc
Q psy13246 31 SKVIVKFLTVMMKHGKLPE 49 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~ 49 (81)
-..+..+++.|+++|||..
T Consensus 39 r~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 39 KKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCcEec
Confidence 4567788999999999753
No 23
>1a6s_A GAG polyprotein; core protein, virus structure, membrane binding, viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.61.1.4
Probab=39.66 E-value=12 Score=23.27 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.3
Q ss_pred EechHHHHHHHHHHhhcCccCceE
Q psy13246 28 RPCSKVIVKFLTVMMKHGKLPEVF 51 (81)
Q Consensus 28 ~p~Skl~~~il~IL~~eGYI~~~~ 51 (81)
.|++|-...+|..|++||.+.+..
T Consensus 20 spskKeI~a~LslL~kEg~l~sPs 43 (87)
T 1a6s_A 20 SPSKKEIGAMLSLLQKEGLLMSPS 43 (87)
T ss_dssp SSCSSHHHHHHHTGGGTTCTTCGG
T ss_pred CCcHHHHHHHHHHHHHccCcCChh
Confidence 388999999999999999998754
No 24
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=39.44 E-value=50 Score=18.43 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcCCccce
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~~~~~~ 60 (81)
.......++-|.++|||...... +++.+.
T Consensus 48 ~~tv~~~l~~L~~~glv~~~~~~-~~r~~~ 76 (109)
T 1sfx_A 48 ARFVRDRLKVLLKRGFVRREIVE-KGWVGY 76 (109)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEE-SSSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEeec-CCceEE
Confidence 34567788999999999977654 444433
No 25
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=38.40 E-value=31 Score=21.79 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcCC
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILGI 56 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~~ 56 (81)
.......++-|+++|||..|...-+.
T Consensus 38 ~~tv~~~l~~L~~~G~i~~~~~~~d~ 63 (162)
T 2p5v_A 38 PSPCLRRLKQLEDAGIVRQYAALLSP 63 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHCCCEeeecccCCh
Confidence 34467789999999999998755443
No 26
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=38.21 E-value=33 Score=21.44 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHhhcCccCceEEEcCCcc
Q psy13246 30 CSKVIVKFLTVMMKHGKLPEVFVILGIRT 58 (81)
Q Consensus 30 ~Skl~~~il~IL~~eGYI~~~~~~~~~~~ 58 (81)
..+..-..|+.|++.|||.....-++.+.
T Consensus 62 s~~tls~~L~~Le~~GlV~r~~~~~d~r~ 90 (131)
T 1yyv_A 62 SEXMLAQSLQALEQDGFLNRVSYPVVPPH 90 (131)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEECSSSCE
T ss_pred CHHHHHHHHHHHHHCCcEEEEecCCCCCe
Confidence 35566778999999999997654344443
No 27
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=37.84 E-value=33 Score=21.29 Aligned_cols=26 Identities=4% Similarity=0.066 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcCC
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILGI 56 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~~ 56 (81)
.......++-|+++|||..|...-+.
T Consensus 33 ~~tv~~~l~~L~~~G~i~~~~~~~d~ 58 (144)
T 2cfx_A 33 PPSVTERVRQLESFGIIKQYTLEVDQ 58 (144)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHCCCeEEEecccCh
Confidence 44567789999999999998754443
No 28
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=36.83 E-value=44 Score=20.41 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=20.4
Q ss_pred echHHHHHHHHHHhhcCccCceEE
Q psy13246 29 PCSKVIVKFLTVMMKHGKLPEVFV 52 (81)
Q Consensus 29 p~Skl~~~il~IL~~eGYI~~~~~ 52 (81)
+.....-.+|+-|.++|||.....
T Consensus 45 i~~gtly~~L~rLe~~GlI~~~~~ 68 (116)
T 3f8b_A 45 LNEATLYTIFKRLEKDGIISSYWG 68 (116)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCcchHHHHHHHHHHCCCEEEEee
Confidence 456778899999999999998764
No 29
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=36.74 E-value=29 Score=19.92 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 34 IVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 34 ~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.-.+++-|.++|||. .-.+|.+...+.
T Consensus 48 vs~~l~~Le~~Glv~--~~~~drR~~~~~ 74 (95)
T 2pg4_A 48 FMGLKDRLIRAGLVK--EETLSYRVKTLK 74 (95)
T ss_dssp HTTHHHHHHHTTSEE--EEEEETTEEEEE
T ss_pred HHHHHHHHHHCCCee--cCCCCCCeEEEE
Confidence 567789999999999 333344443343
No 30
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=36.47 E-value=45 Score=21.33 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=21.0
Q ss_pred echHHHHHHHHHHhhcCccCceEEE
Q psy13246 29 PCSKVIVKFLTVMMKHGKLPEVFVI 53 (81)
Q Consensus 29 p~Skl~~~il~IL~~eGYI~~~~~~ 53 (81)
......-..|+-|+++|||......
T Consensus 74 is~gtLy~~L~rLE~~GlI~~~~~~ 98 (145)
T 1xma_A 74 IKETTLYSAFARLEKNGYIKSYYGE 98 (145)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cChhHHHHHHHHHHHCCCEEEEEec
Confidence 4567788899999999999988655
No 31
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=36.29 E-value=28 Score=20.88 Aligned_cols=30 Identities=7% Similarity=0.192 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
....+++-|.+.|||....--+|++...+.
T Consensus 67 ~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~ 96 (143)
T 3oop_A 67 TVNRIVDVLLRKELIVREISTEDRRISLLS 96 (143)
T ss_dssp HHHHHHHHHHHTTSEEEEC----CCSCEEE
T ss_pred hHHHHHHHHHHCCCeeccCCCccCceeeee
Confidence 456789999999999876544455554444
No 32
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=36.02 E-value=41 Score=23.63 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=37.6
Q ss_pred CCccchHHHHHHHhhhHhhc--------CCceEEEEechHHHHHHHHHHhhc--CccC
Q psy13246 1 MVRVNVLSDALKSINNAEKR--------GKRQVLIRPCSKVIVKFLTVMMKH--GKLP 48 (81)
Q Consensus 1 M~~~D~iaD~LtrIrNA~~a--------~k~~V~~~p~Skl~~~il~IL~~e--GYI~ 48 (81)
|...|+|.+++..+|++... ..+--.++++..++-+-++.|.++ |+|-
T Consensus 1 ~~~~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~~~GliC 58 (206)
T 3mio_A 1 MTRLDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLC 58 (206)
T ss_dssp CCCCCCHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHHHHBCSCCE
T ss_pred CCCchhHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHHHhCCCceE
Confidence 44479999999999998653 223344589999999999999999 6763
No 33
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.48 E-value=24 Score=20.93 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCcc
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRT 58 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~ 58 (81)
....+++-|.++|||....-.+|.+.
T Consensus 66 ~vs~~l~~Le~~glv~r~~~~~d~R~ 91 (142)
T 2fbi_A 66 SMTGVLARLERDGIVRRWKAPKDQRR 91 (142)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHCCCEEeecCCCCCCe
Confidence 45668899999999987654334333
No 34
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=35.25 E-value=38 Score=21.01 Aligned_cols=26 Identities=4% Similarity=0.006 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCc
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIR 57 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~ 57 (81)
......++-|.++|||..|....|.+
T Consensus 36 ~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 36 SAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHHHHHCCCEEEEEeccChh
Confidence 44677899999999999987655543
No 35
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=34.78 E-value=39 Score=20.49 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.2
Q ss_pred EechHHHHHHHHHHhhcCccCceE
Q psy13246 28 RPCSKVIVKFLTVMMKHGKLPEVF 51 (81)
Q Consensus 28 ~p~Skl~~~il~IL~~eGYI~~~~ 51 (81)
.+..-..--+|+-|.++|||....
T Consensus 41 ~is~GtlYp~L~rLe~~GlI~~~~ 64 (99)
T 2co5_A 41 DISDGVLYPLIDSLIDDKILREEE 64 (99)
T ss_dssp BCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCCcHHHHHHHHHHCCCEEEee
Confidence 355677888999999999999876
No 36
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=34.78 E-value=46 Score=20.83 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=22.9
Q ss_pred EechHHHHHHHHHHhhcCccCceEEEcCC
Q psy13246 28 RPCSKVIVKFLTVMMKHGKLPEVFVILGI 56 (81)
Q Consensus 28 ~p~Skl~~~il~IL~~eGYI~~~~~~~~~ 56 (81)
.+.....-.+|+-|.++|||.......++
T Consensus 49 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~ 77 (123)
T 3ri2_A 49 PIEANTLYPLMRRLESQGLLASEWDNGGS 77 (123)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEECSS
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeccCCC
Confidence 35577788899999999999988655443
No 37
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=34.77 E-value=28 Score=20.62 Aligned_cols=29 Identities=14% Similarity=-0.063 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVY 61 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i 61 (81)
....+++-|.++|||....-.+|.+...+
T Consensus 66 tvs~~l~~Le~~Gli~r~~~~~d~R~~~i 94 (141)
T 3bro_A 66 TATVLLQRMEIKKLLYRKVSGKDSRQKCL 94 (141)
T ss_dssp HHHHHHHHHHHTTSEEEEECSSCTTSEEE
T ss_pred hHHHHHHHHHHCCCEEeeCCCcCCCeeee
Confidence 45668899999999986543334444333
No 38
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=34.65 E-value=28 Score=20.46 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....++-|.+.|||....-.+|++...+.
T Consensus 63 tvs~~l~~L~~~gli~r~~~~~d~r~~~~~ 92 (139)
T 3bja_A 63 NMTTMIQRMKRDGYVMTEKNPNDQRETLVY 92 (139)
T ss_dssp THHHHHHHHHHTTSEEEEECSSCTTCEEEE
T ss_pred HHHHHHHHHHHCCCeeeccCCCCCceeEEE
Confidence 345688999999999876433344433333
No 39
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=33.28 E-value=30 Score=20.81 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
..-.+++-|.+.|||....--+|.+...+.
T Consensus 66 tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~ 95 (140)
T 3hsr_A 66 TLTPLLKKLEKKDYVVRTREEKDERNLQIS 95 (140)
T ss_dssp HHHHHHHHHHHTTSEEEEC-------CEEE
T ss_pred hHHHHHHHHHHCCCeEecCCCCCcceeeee
Confidence 445789999999999876554555554444
No 40
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=33.19 E-value=21 Score=21.38 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEEEEecCC
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSG 68 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~Vin~~g 68 (81)
....+++-|.++|||....--+|++...+. +..-|
T Consensus 67 tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~-lT~~g 101 (146)
T 3tgn_A 67 AVTKAIKSLVKEGMLETSKDSKDARVIFYQ-LTDLA 101 (146)
T ss_dssp HHHHHHHHHHHTTSEEC----------CCE-ECGGG
T ss_pred HHHHHHHHHHHCCCeEeccCCCCCceeEEE-ECHhH
Confidence 355789999999999876544455543333 44333
No 41
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=33.17 E-value=35 Score=20.87 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
....+++-|.++|||....-.+|.+...+.
T Consensus 82 tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~ 111 (162)
T 3cjn_A 82 TLSRALDGLQADGLVRREVDSDDQRSSRVY 111 (162)
T ss_dssp HHHHHHHHHHHTTSEEEEEC--CCSSEEEE
T ss_pred HHHHHHHHHHHCCCEEecCCCCCCCeeEEE
Confidence 455688999999999876433444443333
No 42
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=32.99 E-value=39 Score=19.92 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
......++-|.++|||....-.+|++...+.
T Consensus 60 ~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~ 90 (142)
T 3bdd_A 60 AAVTRHLKLLEESGYIIRKRNPDNQREVLVW 90 (142)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSSTTCEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCCCeeEEE
Confidence 3455688999999999876443444443333
No 43
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=32.75 E-value=31 Score=20.51 Aligned_cols=31 Identities=6% Similarity=0.000 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....+++-|.+.|||....-.+|++...+.
T Consensus 62 ~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~ 92 (139)
T 3eco_A 62 PTVSNLLRNLERKKLIYRYVDAQDTRRKNIG 92 (139)
T ss_dssp HHHHHHHHHHHHTTSEEEEECCC--CCEEEE
T ss_pred ccHHHHHHHHHHCCCEeecCCCCCCCeeeeE
Confidence 3456788999999999876544454443343
No 44
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.57 E-value=28 Score=20.52 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhcCccCceE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVF 51 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~ 51 (81)
......++-|.++|||....
T Consensus 67 ~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 67 ATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEeeC
Confidence 34556889999999998754
No 45
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=31.77 E-value=33 Score=20.78 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....+++-|.++|||....--+|.+...+.
T Consensus 76 ~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~ 106 (153)
T 2pex_A 76 ATLTPLLKRLQAAGLVTRTRAASDERQVIIA 106 (153)
T ss_dssp HHHHHHHHHHHHTTSEEEEC-------CEEE
T ss_pred ccHHHHHHHHHHCCCEeecCCcccCCeeEee
Confidence 3455688999999999876544455544444
No 46
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=31.72 E-value=23 Score=21.93 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhcCccCceEEE
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVI 53 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~ 53 (81)
....-..|+-|.++|||......
T Consensus 47 ~gtly~~L~~Le~~GlI~~~~~~ 69 (117)
T 3elk_A 47 QGSIYILLKTMKERGFVISESSV 69 (117)
T ss_dssp TTHHHHHHHHHHHHTSEEEEEEE
T ss_pred cchHHHHHHHHHHCCCEEEEeee
Confidence 46788899999999999988653
No 47
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=31.64 E-value=75 Score=18.14 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=31.6
Q ss_pred HHHHHHHhhhHhh-----cCCceEEEEe---------chHHHHHHHHHHhhcCccCceEEEcCCccceEEE
Q psy13246 7 LSDALKSINNAEK-----RGKRQVLIRP---------CSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM 63 (81)
Q Consensus 7 iaD~LtrIrNA~~-----a~k~~V~~~p---------~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V 63 (81)
+.-+-.-|..|.. .+.+.|.++. .++++..+.+.|.+++|- |+.. +.|.+.|
T Consensus 14 ~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~--~~e~---n~G~l~V 79 (82)
T 3fau_A 14 LEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFR--FSEI---KPGCLKV 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEECCC---------CHHHHHHHHHHHTTCC--EEEE---ETTEEEE
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCCCCcchHHHHHHHHHHhCCCc--eeeC---CCEEEEE
Confidence 3333334555554 7777777553 256999999999999963 5322 3455554
No 48
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.63 E-value=34 Score=20.45 Aligned_cols=30 Identities=13% Similarity=0.007 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....++-|.++|||....-..|++...+.
T Consensus 66 ~vs~~l~~Le~~glv~r~~~~~d~R~~~~~ 95 (147)
T 2hr3_A 66 NLAALLRELERGGLIVRHADPQDGRRTRVS 95 (147)
T ss_dssp HHHHHHHHHHHTTSEEEEC------CCEEE
T ss_pred hHHHHHHHHHHCCCEeeCCCCCCCCceeeE
Confidence 455688999999999876544455544444
No 49
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=31.60 E-value=44 Score=20.47 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=21.4
Q ss_pred echHHHHHHHHHHhhcCccCceEEEc
Q psy13246 29 PCSKVIVKFLTVMMKHGKLPEVFVIL 54 (81)
Q Consensus 29 p~Skl~~~il~IL~~eGYI~~~~~~~ 54 (81)
+.....-..|+-|.++|||.......
T Consensus 40 is~gtlY~~L~rLe~~GlI~~~~~~~ 65 (115)
T 4esb_A 40 VSEGSIYPLLLRMQKEKLIEGTLKAS 65 (115)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CCcChHHHHHHHHHHCCCeEEEeeec
Confidence 45677889999999999999886554
No 50
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=31.52 E-value=30 Score=20.39 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCc
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIR 57 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~ 57 (81)
......++-|.++|||....-..|++
T Consensus 58 ~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 58 GTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHCCCEEeecCCCCce
Confidence 34566899999999998754333333
No 51
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=31.10 E-value=39 Score=20.98 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcC
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILG 55 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~ 55 (81)
.......++-|+++|+|..|...-+
T Consensus 36 ~~tv~~~l~~L~~~G~i~~~~~~~~ 60 (152)
T 2cg4_A 36 PETIHVRVEKMKQAGIITGARIDVS 60 (152)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCcceEEEecC
Confidence 3446778999999999999985433
No 52
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=30.95 E-value=38 Score=20.92 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 34 IVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 34 ~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.-.+++-|.+.|||....--+|.+...+.
T Consensus 77 vs~~l~~Le~~Glv~r~~~~~DrR~~~l~ 105 (162)
T 3k0l_A 77 ANKILQDLLANGWIEKAPDPTHGRRILVT 105 (162)
T ss_dssp HHHHHHHHHHTTSEEEEECCSSSCCEEEE
T ss_pred HHHHHHHHHHCcCeEecCCCCcCCeeEeE
Confidence 45788999999999876544455544444
No 53
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=30.82 E-value=42 Score=19.79 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
....+++-|.+.|||....--+|++...+.
T Consensus 64 tvs~~l~~L~~~gli~r~~~~~d~R~~~~~ 93 (138)
T 1jgs_A 64 ALTRMLDRLVCKGWVERLPNPNDKRGVLVK 93 (138)
T ss_dssp HHHHHHHHHHHTTSEEEEECTTCSSCEEEE
T ss_pred HHHHHHHHHHHCCCEEecCCcccCceeEeE
Confidence 455688999999999875433344443333
No 54
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=30.65 E-value=40 Score=18.86 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhcCccCce
Q psy13246 32 KVIVKFLTVMMKHGKLPEV 50 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~ 50 (81)
......++.|.++|||...
T Consensus 29 ~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 29 YQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEe
Confidence 4467889999999999754
No 55
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=30.61 E-value=36 Score=20.24 Aligned_cols=30 Identities=13% Similarity=-0.012 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....++-|.++|||....-.+|++...+.
T Consensus 66 tvs~~l~~Le~~glv~r~~~~~d~r~~~~~ 95 (146)
T 2gxg_A 66 AITASVDKLEEMGLVVRVRDREDRRKILIE 95 (146)
T ss_dssp HHHHHHHHHHHTTSEEEEECSSCTTCEEEE
T ss_pred hHHHHHHHHHHCCCEEeecCCCCCceEEEE
Confidence 456688999999999865433344433333
No 56
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=30.41 E-value=45 Score=19.82 Aligned_cols=31 Identities=3% Similarity=-0.068 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....+++-|.+.|||....--.|.+...+.
T Consensus 58 ~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~ 88 (144)
T 1lj9_A 58 TTAARAIKRLEEQGFIYRQEDASNKKIKRIY 88 (144)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCTTCEEEE
T ss_pred hHHHHHHHHHHHCCCEEeecCCCCCceeeeE
Confidence 3455689999999999876533344443333
No 57
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=30.18 E-value=36 Score=20.38 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcCCc
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILGIR 57 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~~~ 57 (81)
....-.+|+-|.+.|||...+-+.+.+
T Consensus 50 ~~tvt~iLk~LE~kglIkr~~~~~~~~ 76 (91)
T 2dk5_A 50 LTEINKILKNLESKKLIKAVKSVAASK 76 (91)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCSSCSS
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCCCC
Confidence 345778999999999999776555333
No 58
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=30.18 E-value=35 Score=20.48 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....++-|.+.|||....--+|++...+.
T Consensus 72 tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~ 101 (150)
T 2rdp_A 72 TTTDLVDRMERNGLVARVRDEHDRRVVRIR 101 (150)
T ss_dssp HHHHHHHHHHHTTSEEEEECCC---CEEEE
T ss_pred hHHHHHHHHHHCCCeeecCCCCCcceeEeE
Confidence 455688999999999865433344433333
No 59
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=29.92 E-value=34 Score=20.82 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
...-.+++-|.+.|||....--+|.+...+.
T Consensus 70 ~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~ 100 (149)
T 4hbl_A 70 NTLTPMLKRLEQSGWVKRERQQSDKRQLIIT 100 (149)
T ss_dssp HHHHHHHHHHHHHTSEEC---------CEEE
T ss_pred HHHHHHHHHHHHCCCEeeCCCCCCcceeeee
Confidence 3455789999999999877554555554444
No 60
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=29.55 E-value=32 Score=20.70 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....++-|.++|||....--+|.+...+.
T Consensus 70 ~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~ 99 (152)
T 3bj6_A 70 YISRILQEVQRAGLIERRTNPEHARSHRYW 99 (152)
T ss_dssp HHHHHHHHHHHTTSEEEECCSSSTTSCEEE
T ss_pred HHHHHHHHHHHCCCeeecCCcccccceeeE
Confidence 455688999999999876433344444443
No 61
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=29.55 E-value=37 Score=21.18 Aligned_cols=30 Identities=3% Similarity=-0.043 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
....+++-|.++|||....--.|.+...+.
T Consensus 75 tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~ 104 (168)
T 2nyx_A 75 ATGRMVDRLVGAELIDRLPHPTSRRELLAA 104 (168)
T ss_dssp HHHHHHHHHHHTTSEEEEECSSCSSCEEEE
T ss_pred HHHHHHHHHHHCCCEEeccCCCCCCeeEEE
Confidence 345688999999999865433344433333
No 62
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=29.33 E-value=30 Score=21.01 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
....+++-|.++|||....-.+|++...+.
T Consensus 73 tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~ 102 (155)
T 3cdh_A 73 RMTRIVDQMDARGLVTRVADAKDKRRVRVR 102 (155)
T ss_dssp HHHHHHHHHHHTTSEEECC------CCCEE
T ss_pred HHHHHHHHHHHCCCEEeccCCCcCCeeEeE
Confidence 455688999999999865444455444444
No 63
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=29.08 E-value=39 Score=20.36 Aligned_cols=30 Identities=3% Similarity=-0.017 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....++-|.++|||....--+|.+...+.
T Consensus 67 tvs~~l~~Le~~glv~r~~~~~d~R~~~~~ 96 (155)
T 1s3j_A 67 AVTLMADRLEQKNLIARTHNTKDRRVIDLS 96 (155)
T ss_dssp HHHHHHHHHHHTTSEEEEECSSCTTSEEEE
T ss_pred HHHHHHHHHHHCCCEeecCCCCCCceEEEE
Confidence 445688999999999876433344443333
No 64
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=29.07 E-value=36 Score=20.17 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
....+++-|.++|||....-.+|.+...+.
T Consensus 68 ~vs~~l~~L~~~glv~r~~~~~d~R~~~~~ 97 (146)
T 2fbh_A 68 TLARLLDGLESQGLVRRLAVAEDRRAKHIV 97 (146)
T ss_dssp HHHHHHHHHHHTTSEEEECCBTTBCSCEEE
T ss_pred hHHHHHHHHHHCCCeeecCCCcccCeeeeE
Confidence 345688999999999865433344443443
No 65
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=28.95 E-value=40 Score=20.78 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
..-.+++-|.+.|||..-.--+|.+...+.
T Consensus 83 ~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~ 112 (161)
T 3e6m_A 83 TTSRTVDQLVDEGLAARSISDADQRKRTVV 112 (161)
T ss_dssp HHHHHHHHHHHTTSEEECC---CCCSCEEE
T ss_pred HHHHHHHHHHHCCCEEeeCCcccCCeeEee
Confidence 456788999999999876554566554454
No 66
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=28.61 E-value=41 Score=19.98 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVY 61 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i 61 (81)
.....++-|.++|||....--+|++...+
T Consensus 67 tvs~~l~~L~~~gli~r~~~~~d~R~~~~ 95 (142)
T 2bv6_A 67 TVSPLLKRMEQVDLIKRERSEVDQREVFI 95 (142)
T ss_dssp THHHHHHHHHHTTSEEEEECSSSTTCEEE
T ss_pred hHHHHHHHHHHCCCEEeecCCCCcceEEE
Confidence 35568899999999986543234443333
No 67
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=28.49 E-value=46 Score=20.15 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcCccCceEEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVI 53 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~ 53 (81)
...-..|+-|.++|||......
T Consensus 50 ~tly~~L~~Le~~GlI~~~~~~ 71 (118)
T 2esh_A 50 GNIYRVLADLEESGFLSTEWDT 71 (118)
T ss_dssp CCHHHHHHHHHHTTSEEEEEEC
T ss_pred chHHHHHHHHHHCCCeEEEeec
Confidence 5677899999999999987654
No 68
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=28.47 E-value=56 Score=21.27 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=27.8
Q ss_pred EechHHHHHHHHHHhhcCccCceEEEcC--Cc-cceEEEEecCC
Q psy13246 28 RPCSKVIVKFLTVMMKHGKLPEVFVILG--IR-TTVYCMINWSG 68 (81)
Q Consensus 28 ~p~Skl~~~il~IL~~eGYI~~~~~~~~--~~-~~~i~Vin~~g 68 (81)
.+.....-..|+-|.++|||..+...++ ++ ...++ |.+-|
T Consensus 75 ~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~-LT~~G 117 (148)
T 2zfw_A 75 RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQ-LAQAN 117 (148)
T ss_dssp ECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEE-ESSSS
T ss_pred CCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEE-ECHHH
Confidence 3556788899999999999998765431 22 23444 66666
No 69
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=28.47 E-value=38 Score=20.62 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
..-.+++-|.+.|||....-.+|++...+.
T Consensus 74 tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~ 103 (154)
T 2eth_A 74 NVTNVVDSLEKRGLVVREMDPVDRRTYRVV 103 (154)
T ss_dssp HHHHHHHHHHHTTSEEEEECTTTSSCEEEE
T ss_pred HHHHHHHHHHHCCCEEeeCCCCCcceeEEE
Confidence 456688999999999876433344443333
No 70
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=27.96 E-value=35 Score=20.77 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=15.9
Q ss_pred HHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 34 IVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 34 ~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
...+++-|.+.|||....-.+|++...+.
T Consensus 79 vs~~l~~Le~~Gli~r~~~~~d~R~~~~~ 107 (160)
T 3boq_A 79 VSGLVNRLIKDGMVVKAMSADDRRSFSAK 107 (160)
T ss_dssp HHHHHHHHHHHTSEEEC--------CEEE
T ss_pred HHHHHHHHHHCCCEEeecCCCCCCeEEEE
Confidence 45588999999999876544455544444
No 71
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=27.95 E-value=51 Score=20.35 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCC
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGI 56 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~ 56 (81)
......++-|+++|+|..|...-+.
T Consensus 38 ~tv~~~l~~L~~~G~i~~~~~~~~~ 62 (151)
T 2dbb_A 38 QRIARRIDKLKKLGIIRKFTIIPDI 62 (151)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEEECT
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCh
Confidence 3467788999999999998754433
No 72
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=27.91 E-value=35 Score=20.56 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
..-.+++-|.+.|||..-.--+|++...+.
T Consensus 69 tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~ 98 (127)
T 2frh_A 69 QVVKAVKILSQEDYFDKKRNEHDERTVLIL 98 (127)
T ss_dssp HHHHHHHHHHHTTSSCCBCCSSSSCCCEEE
T ss_pred HHHHHHHHHHHCCCEEecCCCCCCCeeEEE
Confidence 455688999999999876444455544443
No 73
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=27.78 E-value=38 Score=20.11 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCc
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIR 57 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~ 57 (81)
....+++-|.++|||....--+|++
T Consensus 63 tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 63 TVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred hHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4556889999999998764333333
No 74
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=27.20 E-value=61 Score=19.90 Aligned_cols=26 Identities=8% Similarity=-0.143 Sum_probs=21.5
Q ss_pred echHHHHHHHHHHhhcCccCceEEEc
Q psy13246 29 PCSKVIVKFLTVMMKHGKLPEVFVIL 54 (81)
Q Consensus 29 p~Skl~~~il~IL~~eGYI~~~~~~~ 54 (81)
+.....-..|+-|.++|||.......
T Consensus 44 is~gtlY~~L~rLe~~GlI~~~~~~~ 69 (116)
T 3hhh_A 44 IVEGTVYTILLRLEKNQWVIAEKKPS 69 (116)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CCccHHHHHHHHHHHCCCEEEEeeec
Confidence 45678889999999999999886543
No 75
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=26.99 E-value=42 Score=20.68 Aligned_cols=25 Identities=8% Similarity=-0.097 Sum_probs=21.0
Q ss_pred echHHHHHHHHHHhhcCccCceEEE
Q psy13246 29 PCSKVIVKFLTVMMKHGKLPEVFVI 53 (81)
Q Consensus 29 p~Skl~~~il~IL~~eGYI~~~~~~ 53 (81)
+.....-..|+-|.++|||......
T Consensus 42 is~gtlY~~L~rLe~~GlI~~~~~~ 66 (117)
T 4esf_A 42 VVEGTVYTILVRLEKKKLVNIEKKP 66 (117)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCccHHHHHHHHHHHCCCEEEEeec
Confidence 4567888999999999999988653
No 76
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=26.84 E-value=32 Score=20.65 Aligned_cols=29 Identities=7% Similarity=-0.060 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVY 61 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i 61 (81)
..-.+++-|.++|||....--+|.+...+
T Consensus 67 tvs~~l~~L~~~Glv~r~~~~~DrR~~~~ 95 (142)
T 3ech_A 67 LITRKIRELEGRNLVRRERNPSDQRSFQL 95 (142)
T ss_dssp HHHHHHHHHHHTTSEEC----------CC
T ss_pred HHHHHHHHHHHCCCEeeccCCCCCCeeee
Confidence 34578899999999987654445554333
No 77
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=26.82 E-value=53 Score=20.68 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhhcCccCceEE
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFV 52 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~ 52 (81)
.......|+.|+++|||.....
T Consensus 51 ~~tls~~L~~Le~~GlI~r~~~ 72 (146)
T 2f2e_A 51 KNILAARLRNLVEHGVMVAVPA 72 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEec
Confidence 5567788999999999987643
No 78
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=26.68 E-value=35 Score=20.71 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhhcCccCceEEEc
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVIL 54 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~ 54 (81)
.......++-|+++|||..|....
T Consensus 32 ~~tv~~~l~~L~~~G~i~~~~~~~ 55 (141)
T 1i1g_A 32 ETAVRKRVKALEEKGIIEGYTIKI 55 (141)
T ss_dssp HHHHHHHHHHHHHHTSSCCCCCCC
T ss_pred HHHHHHHHHHHHHCCCEecccccc
Confidence 445667899999999999886433
No 79
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=26.59 E-value=59 Score=21.03 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcC
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILG 55 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~ 55 (81)
...+...++-|.++|+|..|...-+
T Consensus 45 ~~tv~~~l~~L~~~G~I~~~~~~~d 69 (171)
T 2ia0_A 45 ESTIHFRIKKLQERGVIERYTIILG 69 (171)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEeecccCC
Confidence 3446778899999999999875443
No 80
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=26.57 E-value=72 Score=19.40 Aligned_cols=27 Identities=7% Similarity=-0.045 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcCCc
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILGIR 57 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~~~ 57 (81)
...+...++-|.+.|||.......+.+
T Consensus 56 ~sTV~r~L~~L~~~GlV~r~~~~~d~~ 82 (123)
T 3r0a_A 56 VSTVQRSVKKLHEKEILQRSQQNLDGG 82 (123)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEECTTS
T ss_pred HHHHHHHHHHHHHCCCEEeeCCccCCC
Confidence 345677899999999999876555444
No 81
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=26.41 E-value=1.1e+02 Score=18.40 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCc
Q psy13246 7 LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGK 46 (81)
Q Consensus 7 iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGY 46 (81)
+.++|..+....+.|-.-+...+...-..++.+.|.+.||
T Consensus 113 ~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 113 LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF 152 (192)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC
Confidence 4667777777666655555546777778899999999999
No 82
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=26.34 E-value=40 Score=20.90 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVY 61 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i 61 (81)
..-.+++-|.+.|||....--+|.+...+
T Consensus 78 tvs~~l~~Le~~Glv~r~~~~~DrR~~~l 106 (168)
T 3u2r_A 78 DITRLIDRLDDRGLVLRTRKPENRRVVEV 106 (168)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEEEEEE
T ss_pred hHHHHHHHHHHCCCEeecCCCCCCCeeEe
Confidence 45678999999999987644344444333
No 83
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=26.33 E-value=41 Score=20.09 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCcc
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRT 58 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~ 58 (81)
..-..++-|.+.|||....--+|++.
T Consensus 66 tvs~~l~~Le~~Glv~r~~~~~D~R~ 91 (144)
T 3f3x_A 66 AITAAVDKLEAKGLVRRIRDSKDRRI 91 (144)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHCCCEEeccCCCCCce
Confidence 45578999999999987644334443
No 84
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=26.06 E-value=35 Score=20.40 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
......++-|.++|||....--+|++...+.
T Consensus 69 ~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~ 99 (147)
T 1z91_A 69 GTLTPMLKRMEQQGLITRKRSEEDERSVLIS 99 (147)
T ss_dssp HHHHHHHHHHHHHTSEECCBCSSCTTSBEEE
T ss_pred CcHHHHHHHHHHCCCEEeccCCCCCCeeEEE
Confidence 3455688999999999876543444544444
No 85
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=25.43 E-value=52 Score=19.82 Aligned_cols=30 Identities=3% Similarity=-0.124 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhcCccCc--eEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPE--VFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~--~~~~~~~~~~~i~ 62 (81)
....+++-|.+.|||.. ..-..|.+...+.
T Consensus 71 tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~ 102 (154)
T 2qww_A 71 SAAANVDGLISLGLVVKLNKTIPNDSMDLTLK 102 (154)
T ss_dssp HHHHHHHHHHHTTSEEESCC--CTTCTTCEEE
T ss_pred HHHHHHHHHHHCCCEEecCcCCCCCCceeEeE
Confidence 45668899999999987 4333344444443
No 86
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=25.32 E-value=40 Score=20.78 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhhcCccCceEEE
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVI 53 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~ 53 (81)
.......++.|+++|||..|...
T Consensus 31 ~~tv~~~l~~L~~~G~i~~~~~~ 53 (150)
T 2pn6_A 31 KATLSYRIKKLEKDGVIKGYYAY 53 (150)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCC
T ss_pred HHHHHHHHHHHHHCCcEEEEEee
Confidence 34467789999999999998644
No 87
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=25.17 E-value=48 Score=20.27 Aligned_cols=30 Identities=7% Similarity=-0.054 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
..-.+++-|.+.|||....--+|++...+.
T Consensus 80 tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~ 109 (159)
T 3s2w_A 80 TTARAIQKLVDEGYVFRQRDEKDRRSYRVF 109 (159)
T ss_dssp HHHHHHHHHHHTTSEEEEECC---CCEEEE
T ss_pred HHHHHHHHHHHCCCEEEecCCCCCCeeEEE
Confidence 345788999999999875433444443333
No 88
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=24.58 E-value=40 Score=20.22 Aligned_cols=30 Identities=7% Similarity=-0.113 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....++-|.++|||....-.+|.+...+.
T Consensus 70 tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~ 99 (148)
T 3nrv_A 70 AVSRTVKKLEEKKYIEVNGHSEDKRTYAIN 99 (148)
T ss_dssp HHHHHHHHHHHTTSEEC---------CCBE
T ss_pred HHHHHHHHHHHCCCEEeecCCCCcceeEeE
Confidence 345788889999999876544555544333
No 89
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=24.55 E-value=38 Score=20.67 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVY 61 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i 61 (81)
....+++-|.++|||....-.+|++...+
T Consensus 79 tvs~~l~~Le~~glv~r~~~~~d~R~~~~ 107 (162)
T 2fa5_A 79 AVSRAVARLLERGFIRRETHGDDRRRSML 107 (162)
T ss_dssp HHHHHHHHHHHTTSEEC---------CCC
T ss_pred HHHHHHHHHHHCCCEeeecCCCCCCeeEE
Confidence 45668899999999987654445444333
No 90
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=24.45 E-value=50 Score=20.68 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
...-.+++-|.+.|||....--+|.+...+.
T Consensus 83 ~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~ 113 (166)
T 3deu_A 83 PSLVRTLDQLEDKGLISRQTCASDRRAKRIK 113 (166)
T ss_dssp HHHHHHHHHHHHTTSEEEC--------CEEE
T ss_pred hhHHHHHHHHHHCCCEEeeCCCCCCCeeEEE
Confidence 3445788999999999876544455544444
No 91
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=24.23 E-value=37 Score=20.55 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....+++-|.+.|||....-.+|.+...+.
T Consensus 69 ~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~ 99 (150)
T 3fm5_A 69 SQIVGLVDELEERGLVVRTLDPSDRRNKLIA 99 (150)
T ss_dssp HHHHHHHHHHHTTTSEEC-----------CE
T ss_pred hHHHHHHHHHHHCCCEEeeCCccccchheee
Confidence 3455788999999999876544555543333
No 92
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=23.88 E-value=53 Score=20.04 Aligned_cols=57 Identities=16% Similarity=0.023 Sum_probs=38.2
Q ss_pred CCceEEEEechHHHHHHHHHHhhcCcc-CceEEEcCCccceEEE-----EecCCCccccceee
Q psy13246 21 GKRQVLIRPCSKVIVKFLTVMMKHGKL-PEVFVILGIRTTVYCM-----INWSGIKPNPIITL 77 (81)
Q Consensus 21 ~k~~V~~~p~Skl~~~il~IL~~eGYI-~~~~~~~~~~~~~i~V-----in~~gi~pr~~~~~ 77 (81)
|.+-+..++.+-....+...+..+||. ..|++...-..+.+.. +.++|+.|+-.+.+
T Consensus 33 G~r~~rrF~~~~tl~~v~~fv~~~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~V 95 (109)
T 2cr5_A 33 GRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNV 95 (109)
T ss_dssp SCEEEEEEESSSBTHHHHHHHHHHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEE
Confidence 444455577777788888888888884 5788776543333332 77888888766543
No 93
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=22.92 E-value=31 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCcc
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRT 58 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~ 58 (81)
..-.+++-|.+.|||....--+|.+.
T Consensus 73 ~vs~~l~~L~~~Glv~r~~~~~DrR~ 98 (148)
T 3jw4_A 73 SITSMLQGLEKKGYIERRIPENNARQ 98 (148)
T ss_dssp CHHHHHHHHHHTTSBCCC--------
T ss_pred HHHHHHHHHHHCCCEEeeCCCCCchh
Confidence 34578999999999997754445544
No 94
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=22.89 E-value=38 Score=20.28 Aligned_cols=30 Identities=7% Similarity=-0.046 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
....+++-|.+.|||....--+|.+...+.
T Consensus 61 tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~ 90 (145)
T 3g3z_A 61 TVSGVCKTLAGQGLIEWQEGEQDRRKRLLS 90 (145)
T ss_dssp HHHHHHHHHHHTTSEEECCCSSCGGGSCEE
T ss_pred HHHHHHHHHHHCCCEeeccCCCCCceeeee
Confidence 455788999999999855433344444444
No 95
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=22.84 E-value=43 Score=20.32 Aligned_cols=20 Identities=5% Similarity=0.263 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhhcCccCce
Q psy13246 31 SKVIVKFLTVMMKHGKLPEV 50 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~ 50 (81)
-.....++..|.+.|||...
T Consensus 40 ~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 40 EHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHHCCceEec
Confidence 35678899999999999654
No 96
>1y43_A Aspergillopepsin II light chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=22.81 E-value=17 Score=19.43 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=10.6
Q ss_pred ecCC-Cccccceeeee
Q psy13246 65 NWSG-IKPNPIITLVT 79 (81)
Q Consensus 65 n~~g-i~pr~~~~~~~ 79 (81)
|||| +.+.--+|-|+
T Consensus 6 NWaGAVl~g~~~t~Vs 21 (39)
T 1y43_A 6 NWAGAVLIGDGYTKVT 21 (39)
T ss_dssp SEEEEEEECSCEEEEE
T ss_pred cceEEEecCCCeEEEE
Confidence 7888 87666666554
No 97
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=22.68 E-value=59 Score=20.22 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEEEEecCC
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSG 68 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~Vin~~g 68 (81)
...-.+++-|.+.|||..-.--+|.+...+. +..-|
T Consensus 61 ~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~-LT~~G 96 (151)
T 4aik_A 61 PSLVRTLDQLEEKGLITRHTSANDRRAKRIK-LTEQS 96 (151)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCTTCEEEE-ECGGG
T ss_pred HHHHHHHHHHHhCCCeEeecCCCCCcchhhh-cCHHH
Confidence 3456789999999999876544455544443 44444
No 98
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=22.39 E-value=56 Score=16.59 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.1
Q ss_pred CccchHHHHHHHhhh
Q psy13246 2 VRVNVLSDALKSINN 16 (81)
Q Consensus 2 ~~~D~iaD~LtrIrN 16 (81)
...|..+|+|.|-|.
T Consensus 5 ~~~daFadA~~RaRQ 19 (31)
T 2kxh_B 5 YVNDAFKDALQRARQ 19 (31)
T ss_dssp SCSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 357999999998875
No 99
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.36 E-value=43 Score=20.86 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcC
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILG 55 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~ 55 (81)
.......++.|+++|+|..|...-+
T Consensus 35 ~~tv~~~l~~L~~~G~i~~~~~~~d 59 (151)
T 2cyy_A 35 ESTIHERIRKLRESGVIKKFTAIID 59 (151)
T ss_dssp HHHHHHHHHHHHHHTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEC
Confidence 3446778999999999999874433
No 100
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=21.97 E-value=59 Score=20.03 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 33 VIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 33 l~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
..-.+++-|.+.|||..-.--+|.+...+.
T Consensus 67 tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~ 96 (147)
T 4b8x_A 67 SVTNTVDRLVRSGLVAKRPNPNDGRGTLAT 96 (147)
T ss_dssp HHHHHHHHHHHTTSEEEEECC----CEEEE
T ss_pred HHHHHHHHHHhCCCEEEeecCCcCceeEEE
Confidence 345689999999999876554555554444
No 101
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343} SCOP: d.90.1.0
Probab=21.95 E-value=61 Score=22.28 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=24.6
Q ss_pred chHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccC
Q psy13246 5 NVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLP 48 (81)
Q Consensus 5 D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~ 48 (81)
+.+|+++|.+|-...- ...+.+++++.|+++||..
T Consensus 214 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 248 (248)
T 3eof_A 214 ETLPQVFTDVRYTKKD---------NEFMSENLLKVLRRQGFMD 248 (248)
T ss_dssp SSHHHHHHHTTSCHHH---------HHHHHHHHHHHHHHTTSCC
T ss_pred hhHHHHHHHhhccccc---------HHHHHHHHHHHHHHcCCCC
Confidence 4566677766554332 2567889999999999963
No 102
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=21.84 E-value=75 Score=20.35 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhcCccCceEEEcCCccceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFVILGIRTTVYC 62 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~~~~~~~~~i~ 62 (81)
.....+++-|.+.|||....--+|.+...+.
T Consensus 72 ~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~ 102 (189)
T 3nqo_A 72 QNINRLVANLEKNGYVDVIPSPHDKRAINVK 102 (189)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCSSCEEEE
T ss_pred HHHHHHHHHHHHCCCEEeccCCCCCCeeEEE
Confidence 3456789999999999876544455544443
No 103
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=21.74 E-value=71 Score=18.59 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhcCccCceEE
Q psy13246 32 KVIVKFLTVMMKHGKLPEVFV 52 (81)
Q Consensus 32 kl~~~il~IL~~eGYI~~~~~ 52 (81)
......++.|.++|||.....
T Consensus 48 ~tV~~~L~~L~~~GlV~~~~~ 68 (110)
T 1q1h_A 48 NDVRKKLNLLEEQGFVSYRKT 68 (110)
T ss_dssp HHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 456788999999999987654
No 104
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.02 E-value=40 Score=20.78 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhhcCccCceEEEcC
Q psy13246 31 SKVIVKFLTVMMKHGKLPEVFVILG 55 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~~~~~~ 55 (81)
......+|+-|...|||+...-+.+
T Consensus 67 ~~~vtkiLK~LE~k~lIK~Vksv~~ 91 (95)
T 2yu3_A 67 LTEINKILKNLESKKLIKAVKSVSG 91 (95)
T ss_dssp HHHHHHHHHHHHHHTSEEEECCSCS
T ss_pred HHHHHHHHHHHHhCCCEEEecCccC
Confidence 4567789999999999998865543
No 105
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=20.47 E-value=44 Score=21.73 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhhcCccCce
Q psy13246 31 SKVIVKFLTVMMKHGKLPEV 50 (81)
Q Consensus 31 Skl~~~il~IL~~eGYI~~~ 50 (81)
-+...+++.-|.+.|||.+.
T Consensus 42 ~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 42 PVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp GGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHHCCCEEee
Confidence 45678899999999999754
No 106
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=20.25 E-value=1.7e+02 Score=18.29 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=33.7
Q ss_pred HHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEE
Q psy13246 7 LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFV 52 (81)
Q Consensus 7 iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~ 52 (81)
..+++..+....+.|-.-+...+...-...+.+.|.+.|| +++.
T Consensus 121 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~--~~~~ 164 (204)
T 3e05_A 121 LEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY--MVEV 164 (204)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC--EEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC--ceeE
Confidence 4577788888877777777655766778899999999999 5543
Done!