RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13246
         (81 letters)



>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon
          Methanococcus jannaschii [TaxId: 2190]}
          Length = 129

 Score = 52.6 bits (126), Expect = 3e-11
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 5  NVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          + L++AL  I+N E+ GK+ V I+P SK+I + L VM  +G
Sbjct: 4  DPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNG 44


>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 130

 Score = 44.1 bits (104), Expect = 8e-08
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 7  LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          ++D L +I NA      ++ + P SK+  +   ++ + G
Sbjct: 6  IADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREG 43


>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia
          coli [TaxId: 562]}
          Length = 126

 Score = 42.6 bits (100), Expect = 2e-07
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 7  LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          ++D L  I N +   K  V + P SK+ V    V+ + G
Sbjct: 4  IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEG 41


>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus
          [TaxId: 274]}
          Length = 136

 Score = 40.0 bits (93), Expect = 3e-06
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 7  LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          ++D L  I NA +  K    + P S+   + L ++ + G
Sbjct: 4  IADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREG 41


>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
          [TaxId: 562]}
          Length = 150

 Score = 25.2 bits (55), Expect = 0.71
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 22 KRQVLIRP--CSKVIVKFLTVMMKHGK 46
          +R++L  P   S+++ KF+ ++M  GK
Sbjct: 7  QRKILPDPKFGSELLAKFVNILMVDGK 33


>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
          [TaxId: 274]}
          Length = 145

 Score = 22.9 bits (49), Expect = 5.1
 Identities = 4/16 (25%), Positives = 9/16 (56%)

Query: 31 SKVIVKFLTVMMKHGK 46
            ++  F+  +M+ GK
Sbjct: 9  DVLVTAFINKIMRDGK 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,327
Number of extensions: 12173
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 12
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)