BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13247
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 6 CLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFL 65
C+++ H S++ L++ + L DV + + E ++AH+ +L ACS F +F
Sbjct: 9 CIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQ-----FRAHKTVLMACSGLFYSIFT 63
Query: 66 ENTHPHPIIFLRD--IHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL 113
+ + + D I+ + ++L FMY +N+++ ++ V+ TA L
Sbjct: 64 DQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYL 113
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 7 LKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLE 66
+++ H S++ L++ + L DV + + E ++AH+ +L ACS F +F +
Sbjct: 7 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQ-----FRAHKTVLMACSGLFYSIFTD 61
Query: 67 NTHPHPIIFLRD--IHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL 113
+ + D I+ + ++L FMY +N+++ ++ V+ TA L
Sbjct: 62 QLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYL 110
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 9 WKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENT 68
+ H+ ++ + L++ Q L D T + + +KAH+ +L+ACS YF+ LF++
Sbjct: 7 FPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVH-----FKAHKAVLAACSEYFKMLFVDQK 61
Query: 69 HPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVR 116
++ L + L +L FMY ++++ +++ VL A L ++
Sbjct: 62 ---DVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQ 106
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 7 LKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLE 66
+ + H+ ++ + L++ Q L D T + + +KAH+ +L+ACS YF+ LF++
Sbjct: 3 MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVH-----FKAHKAVLAACSEYFKMLFVD 57
Query: 67 NTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVR 116
++ L + L +L FMY ++++ +++ VL A L ++
Sbjct: 58 QK---DVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQ 104
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 12 HTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPH 71
H +N+ L+ + + L DVTL + K ++AH+ +L+ACS YF + + T
Sbjct: 15 HCTNILLGLNDQRKKDILCDVTLI-----VERKEFRAHRAVLAACSEYFWQALVGQTKND 69
Query: 72 PIIFL-RDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGL 118
++ L ++ + +L F Y ++ + ++++++V+ A+ L + L
Sbjct: 70 LVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNL 117
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 44 KTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGE-VNIKQDS 102
+ ++AH+ ILSA S YF +LF + F+R E IL+++Y + V ++ D
Sbjct: 43 RKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFAE---ILNYIYSSKIVRVRSDL 99
Query: 103 LKQVLETAKVLMVRGLCEENSP 124
L +++++ ++L V+ + E P
Sbjct: 100 LDELIKSGQLLGVKFIAELGVP 121
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 1 MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYF 60
+D + + +H+S++ L++ L DV + + + H+ +L+ACS YF
Sbjct: 7 VDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEG-----REFPTHRSVLAACSQYF 61
Query: 61 EKLF-----LENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL 113
+KLF ++ + + I F + + L ++ F Y + + ++ +L A++L
Sbjct: 62 KKLFTSGAVVDQQNVYEIDF---VSAEALTALMDFAYTATLTVSTANVGDILSAARLL 116
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 5 FCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLF 64
F + H++N+ L+ + + L DVT+ + ++AH+ +L+ACS YF
Sbjct: 12 FAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQR-----FRAHRSVLAACSSYFHSRI 66
Query: 65 LENTHPHPIIFL-RDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGL 118
+ T + L ++ K E ++ F Y ++ + +D++ +V + L V +
Sbjct: 67 VGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNI 121
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 45 TYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLK 104
+KAH +L+ CS +F++++ + T + L + ++L F Y G + + +
Sbjct: 36 VFKAHWSVLACCSHFFQRIYGDGTGGS--VVLPAGFAEIFGLLLDFFYTGHLALTSGNRD 93
Query: 105 QVLETAKVLMV 115
QVL AK L V
Sbjct: 94 QVLLAAKELRV 104
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 45 TYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLK 104
+KAH+ +L+A S YF LF N+ + + + + IL F Y G +++
Sbjct: 44 AFKAHRAVLAASSSYFRDLF-NNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQD 102
Query: 105 QVLETAKVLMVRGLCEENS 123
++ TA L ++ + E+ +
Sbjct: 103 LLMYTAGFLQIQEIMEKGT 121
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 27/140 (19%)
Query: 12 HTSNLTDVLSKFLQDESLVDVTLACNWENSDI---------KTYKAHQMILSACSPYFEK 62
+T N+ V L DE L WENS + ++AH+ IL+A SP F
Sbjct: 149 NTMNMVKVPECRLADE------LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSA 202
Query: 63 LF---LENTHPHPIIFLRDIHHKELEVILHFMYRGEV----NIKQDSL----KQVLETAK 111
+F +E + + + + D+ + + ++ F+Y G+ + D L K LE K
Sbjct: 203 MFEHEMEESKKNRVE-INDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLK 261
Query: 112 VLMVRGLCEENSPNGAGEIL 131
V+ LC S A EIL
Sbjct: 262 VMCEDALCSNLSVENAAEIL 281
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 7 LKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLF-- 64
+ + +H+S++ L++ L DV + + + H+ +L+ACS YF+KLF
Sbjct: 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEG-----REFPTHRSVLAACSQYFKKLFTS 57
Query: 65 ---LENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL 113
++ + + I F + + L ++ F Y + + ++ +L A++L
Sbjct: 58 GAVVDQQNVYEIDF---VSAEALTALMDFAYTATLTVSTANVGDILSAARLL 106
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 44 KTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGE-VNIKQDS 102
+ ++AH+ ILSA S YF +LF + F+R E IL+++Y + V ++ D
Sbjct: 41 RKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFAE---ILNYIYSSKIVRVRSDL 97
Query: 103 LKQVLETAKVLMVR 116
L +++++ ++L V+
Sbjct: 98 LDELIKSGQLLGVK 111
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 14 SNLTDVLSKFLQDESLVDVTLACNWENSDI---------KTYKAHQMILSACSPYFEKLF 64
SN+ V L DE L WENS + ++AH+ IL+A SP F +F
Sbjct: 2 SNMVKVPECRLADE------LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMF 55
Query: 65 ---LENTHPHPIIFLRDIHHKELEVILHFMYRGEV----NIKQDSL----KQVLETAKVL 113
+E + + + + D+ + + ++ F+Y G+ + D L K LE KV+
Sbjct: 56 EHEMEESKKNR-VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVM 114
Query: 114 MVRGLCEENSPNGAGEIL 131
LC S A EIL
Sbjct: 115 CEDALCSNLSVENAAEIL 132
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 45 TYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLK 104
+KAH +L+ CS +F+ L+ + + + L + ++L F Y G + + +
Sbjct: 35 VFKAHWSVLACCSHFFQSLYGDGSGGS--VVLPAGFAEIFGLLLDFFYTGHLALTSGNRD 92
Query: 105 QVLETAKVLMV---RGLCEENSP 124
QVL A+ L V LC+ P
Sbjct: 93 QVLLAARELRVPEAVELCQSFKP 115
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 46 YKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQ 105
+KAH+ +L++ S YF ++ + + + + + +L F+Y G +N+ ++K+
Sbjct: 34 FKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKE 93
Query: 106 VLETAKVLMV 115
+ + A L V
Sbjct: 94 IHQAADYLKV 103
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 25/102 (24%)
Query: 31 DVTLACNWENSDIKTYKAHQMILSACSPYFEKL----FLEN-----------THPHPIIF 75
D+TL + + + ++AH+ +L+A + YF L F E+ + P P
Sbjct: 52 DITLC--FGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGP--- 106
Query: 76 LRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETA-KVLMVR 116
+E ++ +MY G + + S+ +VLE A + L++R
Sbjct: 107 ----EPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR 144
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 5 FCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLF 64
F + H++N+ L+ + + L DVT+ + ++AH+ +L+ACS YF
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQR-----FRAHRSVLAACSSYFHSRI 59
Query: 65 LENTHPHPIIFL-RDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGL 118
+ I L ++ K E ++ F Y ++ + ++++ +V + + L V +
Sbjct: 60 VGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNI 114
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 25/104 (24%)
Query: 29 LVDVTLACNWENSDIKTYKAHQMILSACSPYFEKL----FLEN-----------THPHPI 73
D+TL + + + ++AH+ +L+A + YF L F E+ + P P
Sbjct: 32 FCDITLC--FGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGP- 88
Query: 74 IFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETA-KVLMVR 116
+E ++ + Y G + + S+ +VLE A + L++R
Sbjct: 89 ------EPDTVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIR 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,408,687
Number of Sequences: 62578
Number of extensions: 198671
Number of successful extensions: 463
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 24
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)