Query psy13247
Match_columns 187
No_of_seqs 120 out of 1642
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:52:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 1.2E-31 2.7E-36 229.2 5.8 178 4-187 11-198 (571)
2 PHA02713 hypothetical protein; 100.0 7.6E-31 1.6E-35 224.5 6.1 173 7-187 3-188 (557)
3 PHA02790 Kelch-like protein; P 99.9 1.1E-28 2.4E-33 208.2 4.7 159 18-187 11-183 (480)
4 PHA03098 kelch-like protein; P 99.9 3.3E-28 7.2E-33 207.9 4.2 155 25-187 5-169 (534)
5 PF00651 BTB: BTB/POZ domain; 99.9 2E-21 4.2E-26 133.0 8.0 100 20-124 1-105 (111)
6 KOG4350|consensus 99.9 3.9E-22 8.4E-27 159.1 4.2 165 14-184 29-206 (620)
7 KOG2075|consensus 99.8 8.2E-22 1.8E-26 159.8 5.1 179 6-184 91-281 (521)
8 smart00225 BTB Broad-Complex, 99.8 5.9E-19 1.3E-23 115.3 9.2 87 31-122 1-89 (90)
9 KOG4591|consensus 99.7 2.7E-18 5.9E-23 125.5 3.1 169 8-180 45-222 (280)
10 KOG4682|consensus 99.6 1.6E-15 3.4E-20 121.2 5.2 153 21-185 61-232 (488)
11 KOG0783|consensus 98.9 2.2E-09 4.8E-14 93.1 6.0 102 16-122 541-681 (1267)
12 KOG0783|consensus 98.9 1.8E-10 3.9E-15 99.7 -0.9 130 27-161 708-845 (1267)
13 KOG2838|consensus 98.5 1.2E-07 2.6E-12 73.2 5.2 99 13-116 114-219 (401)
14 KOG2716|consensus 98.5 3.9E-07 8.4E-12 69.4 6.2 87 32-124 7-99 (230)
15 PF02214 BTB_2: BTB/POZ domain 98.3 1.2E-06 2.6E-11 58.0 4.3 85 32-122 1-94 (94)
16 KOG2838|consensus 98.1 3.3E-06 7.1E-11 65.4 4.1 113 12-124 218-382 (401)
17 KOG0511|consensus 97.9 6.8E-06 1.5E-10 66.3 3.2 72 44-116 301-378 (516)
18 KOG3473|consensus 97.9 6.9E-05 1.5E-09 49.0 6.6 71 44-115 27-112 (112)
19 KOG2714|consensus 97.4 0.00052 1.1E-08 56.4 6.4 85 31-120 12-102 (465)
20 PF07707 BACK: BTB And C-termi 97.3 0.00027 5.8E-09 47.1 3.7 59 104-187 2-60 (103)
21 PF11822 DUF3342: Domain of un 97.2 0.00023 5E-09 56.7 2.5 84 42-125 12-99 (317)
22 smart00512 Skp1 Found in Skp1 97.1 0.0022 4.8E-08 43.1 5.9 79 32-115 4-104 (104)
23 smart00875 BACK BTB And C-term 96.9 0.00087 1.9E-08 44.2 3.2 57 105-186 3-59 (101)
24 KOG1665|consensus 96.6 0.0046 1E-07 46.9 5.3 88 31-124 10-105 (302)
25 PF03931 Skp1_POZ: Skp1 family 96.4 0.019 4E-07 34.8 6.2 56 32-92 3-58 (62)
26 KOG2715|consensus 96.2 0.0068 1.5E-07 43.9 3.7 92 27-123 18-115 (210)
27 KOG0511|consensus 96.2 0.0017 3.7E-08 52.8 0.7 98 19-120 136-236 (516)
28 KOG1987|consensus 95.4 0.0049 1.1E-07 49.1 0.4 82 44-125 110-196 (297)
29 KOG1724|consensus 94.3 0.074 1.6E-06 38.7 4.1 80 44-124 15-121 (162)
30 COG5201 SKP1 SCF ubiquitin lig 91.3 0.35 7.6E-06 33.6 3.8 80 44-124 12-116 (158)
31 KOG3840|consensus 86.4 1.2 2.5E-05 35.8 4.0 82 31-117 97-186 (438)
32 KOG2723|consensus 85.8 1.7 3.8E-05 33.2 4.7 87 32-124 11-104 (221)
33 PF01466 Skp1: Skp1 family, di 76.0 1.6 3.6E-05 27.5 1.3 27 98-124 11-37 (78)
34 KOG1778|consensus 73.5 1.4 3E-05 35.8 0.6 88 44-132 36-127 (319)
35 KOG3713|consensus 71.9 24 0.00052 30.3 7.5 87 31-123 32-133 (477)
36 KOG4390|consensus 71.0 10 0.00022 31.7 5.0 84 31-123 41-132 (632)
37 PF02519 Auxin_inducible: Auxi 69.0 17 0.00038 24.1 5.0 55 31-91 40-99 (100)
38 PLN03090 auxin-responsive fami 47.8 69 0.0015 21.5 5.0 54 32-91 45-103 (104)
39 PLN03219 uncharacterized prote 46.1 77 0.0017 21.4 5.0 55 32-90 44-104 (108)
40 KOG4682|consensus 44.6 4.7 0.0001 33.7 -1.1 30 97-126 169-198 (488)
41 PF06200 tify: tify domain; I 44.3 18 0.00039 19.3 1.5 22 90-111 10-35 (36)
42 KOG4350|consensus 35.1 15 0.00033 30.9 0.5 67 57-125 93-172 (620)
43 PF09116 gp45-slide_C: gp45 sl 32.6 29 0.00063 23.6 1.4 25 96-120 4-28 (112)
44 PLN03220 uncharacterized prote 32.4 1.6E+02 0.0034 19.8 5.1 54 32-88 40-100 (105)
45 COG1576 Uncharacterized conser 24.4 1.1E+02 0.0023 22.2 3.2 23 14-38 83-105 (155)
No 1
>KOG4441|consensus
Probab=99.97 E-value=1.2e-31 Score=229.17 Aligned_cols=178 Identities=21% Similarity=0.339 Sum_probs=154.0
Q ss_pred eeeeeeCCChhHHHHHHHHHHhCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCC--CCCCCeEEeCCCCH
Q psy13247 4 EFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLEN--THPHPIIFLRDIHH 81 (187)
Q Consensus 4 ~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~--e~~~~~i~l~~~~~ 81 (187)
...+..++|+..+++.++.+++.+.+|||++.+++ ++|+|||.|||++||||++||.++ |+.+..|.+.++++
T Consensus 11 ~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~-----~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~ 85 (571)
T KOG4441|consen 11 TSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGD-----REFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDP 85 (571)
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCceEEEEECC-----eeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCH
Confidence 35678889999999999999999999999999999 999999999999999999999987 88999999999999
Q ss_pred HHHHHHhcccccceeccCcccHHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhhhhhh---
Q psy13247 82 KELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQY--- 158 (187)
Q Consensus 82 ~~~~~lL~~~Yt~~~~i~~~~~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 158 (187)
.+++.+++|+||+.+.|+.+++.+|+.+|+.||++.+.+.|+.++....-..+ +.....+++.+.|.++.+.+..+
T Consensus 86 ~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~N-clgi~~~a~~~~~~~L~~~a~~~i~~ 164 (571)
T KOG4441|consen 86 ETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSN-CLGIRRFAELHSCTELLEVADEYILQ 164 (571)
T ss_pred HHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765433322222 22234456666666666655544
Q ss_pred -----cCcccccCCChhHhhhhccCCCccccCCC
Q psy13247 159 -----CDRENYVNSPKLHTSSSMSSSLSEVPAAQ 187 (187)
Q Consensus 159 -----~~~~~f~~l~~~~l~~ils~~~L~v~~~~ 187 (187)
..+++|+.||.+.+..+|++++|+|.+|+
T Consensus 165 ~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~ 198 (571)
T KOG4441|consen 165 HFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEE 198 (571)
T ss_pred HHHHHhccHHhhCCCHHHHHhhccccCCCcCCHH
Confidence 44499999999999999999999999985
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=7.6e-31 Score=224.51 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=140.6
Q ss_pred eeeCCChhHHHHHHHHHHhCCCceeEEEEeC-CCCCcceEEehhhHHhhccCHHHHHhhcCC--CC-CCCeEEeCCCCHH
Q psy13247 7 LKWKNHTSNLTDVLSKFLQDESLVDVTLACN-WENSDIKTYKAHQMILSACSPYFEKLFLEN--TH-PHPIIFLRDIHHK 82 (187)
Q Consensus 7 ~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~v~-~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~--e~-~~~~i~l~~~~~~ 82 (187)
..++.|+..+++.|++|+.++.+|||++.|+ | ++|+|||.|||++|+||++||.++ |+ .++.|.|.+++++
T Consensus 3 ~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~-----~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~ 77 (557)
T PHA02713 3 IDDIKHNRRVVSNISNLLDDDILCDVIITIGDG-----EEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKD 77 (557)
T ss_pred cchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCC-----CEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHH
Confidence 3467899999999999999999999999997 7 899999999999999999999987 44 4788999999999
Q ss_pred HHHHHhcccccceeccCcccHHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhH--------HHHHhhh
Q psy13247 83 ELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNT--------RKRKMET 154 (187)
Q Consensus 83 ~~~~lL~~~Yt~~~~i~~~~~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~ 154 (187)
+++.+|+|+|||+ ++.+++.+|+.+|++|+++.|++.|+.++....- ..++......+..+. ...+.+.
T Consensus 78 ~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~ 154 (557)
T PHA02713 78 AVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSN 154 (557)
T ss_pred HHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999997 7899999999999999999999999765432211 111221111111122 2444555
Q ss_pred hhhhcCcccccCCChhHhhhhccCCC-ccccCCC
Q psy13247 155 GAQYCDRENYVNSPKLHTSSSMSSSL-SEVPAAQ 187 (187)
Q Consensus 155 ~~~~~~~~~f~~l~~~~l~~ils~~~-L~v~~~~ 187 (187)
+.+++.+++|..|+.+.|..+|++++ |+|..|+
T Consensus 155 f~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee 188 (557)
T PHA02713 155 IPTLITTDAFKKTVFEILFDIISTNDNVYLYREG 188 (557)
T ss_pred HHHHhCChhhhhCCHHHHHHHhccccccCCCcHH
Confidence 66667779999999999999999988 7898774
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=1.1e-28 Score=208.21 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=131.6
Q ss_pred HHHHHHHhCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCC--CCCCCeEEe--CCCCHHHHHHHhccccc
Q psy13247 18 DVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLEN--THPHPIIFL--RDIHHKELEVILHFMYR 93 (187)
Q Consensus 18 ~~l~~~~~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~--e~~~~~i~l--~~~~~~~~~~lL~~~Yt 93 (187)
+++..++.++.+|||++.+| ++|+|||+|||++||||++||.++ |+. ..|.+ .++++++++.+|+|+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~------~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~~~~l~~lldy~YT 83 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAIG------GNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLDIHSLTSIVIYSYT 83 (480)
T ss_pred hhHHHHHhhhhhceEEEEcC------cEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcCHHHHHHHHHhhee
Confidence 45667888999999998877 599999999999999999999987 554 34555 48999999999999999
Q ss_pred ceeccCcccHHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhhhhhhcCc----------cc
Q psy13247 94 GEVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQYCDR----------EN 163 (187)
Q Consensus 94 ~~~~i~~~~~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~ 163 (187)
|++.|+.+|+.+++.+|++|+++.+++.|++++....- ..|+.....++..+++.+|.+.+.+|+.+ ++
T Consensus 84 g~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~e 162 (480)
T PHA02790 84 GKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDN 162 (480)
T ss_pred eeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchh
Confidence 99999999999999999999999999999775433322 22344556677788888887777666544 58
Q ss_pred ccCCChhHhhhhccCCCccccCCC
Q psy13247 164 YVNSPKLHTSSSMSSSLSEVPAAQ 187 (187)
Q Consensus 164 f~~l~~~~l~~ils~~~L~v~~~~ 187 (187)
|..||. ..+|++++|+|.+|+
T Consensus 163 f~~L~~---~~lLssd~L~v~~Ee 183 (480)
T PHA02790 163 FDYLSM---KLILESDELNVPDED 183 (480)
T ss_pred hhhCCH---HHhcccccCCCccHH
Confidence 888885 689999999999874
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=3.3e-28 Score=207.88 Aligned_cols=155 Identities=18% Similarity=0.243 Sum_probs=131.7
Q ss_pred hCCCceeEEEEe--CCCCCcceEEehhhHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhcccccceeccCccc
Q psy13247 25 QDESLVDVTLAC--NWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDS 102 (187)
Q Consensus 25 ~~~~~~Dv~i~v--~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e~~~~~i~l~~~~~~~~~~lL~~~Yt~~~~i~~~~ 102 (187)
.++.+|||+|.+ +| ++|+|||.||+++|+||++||.++.. +..|.+.+ ++++|+.+|+|+|||++.++.++
T Consensus 5 ~~~~~~Dv~l~~~~~~-----~~~~~Hk~vLaa~S~yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~ 77 (534)
T PHA03098 5 ELQKFCDESIIIVNGG-----GIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNN 77 (534)
T ss_pred ccCCCCCEEEEEEcCC-----EEEEeHHHHHHhhhHHHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHH
Confidence 389999999998 77 99999999999999999999998755 78899999 99999999999999999999999
Q ss_pred HHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhhhhhhcC--------cccccCCChhHhhh
Q psy13247 103 LKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQYCD--------RENYVNSPKLHTSS 174 (187)
Q Consensus 103 ~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~f~~l~~~~l~~ 174 (187)
+.+|+.+|++|+++.|++.|+.++... +...++...+..+..+++..+.+.+.+++. +++|..||.+.+..
T Consensus 78 ~~~ll~~A~~l~~~~l~~~C~~~l~~~-l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ 156 (534)
T PHA03098 78 VKDILSIANYLIIDFLINLCINYIIKI-IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIK 156 (534)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh-CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHH
Confidence 999999999999999999997654322 222233344556666777777766666644 48999999999999
Q ss_pred hccCCCccccCCC
Q psy13247 175 SMSSSLSEVPAAQ 187 (187)
Q Consensus 175 ils~~~L~v~~~~ 187 (187)
+|++++|+|.+|+
T Consensus 157 ll~~~~L~v~~E~ 169 (534)
T PHA03098 157 ILSDDKLNVSSED 169 (534)
T ss_pred HhcCCCcCcCCHH
Confidence 9999999998774
No 5
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.85 E-value=2e-21 Score=133.04 Aligned_cols=100 Identities=32% Similarity=0.548 Sum_probs=89.0
Q ss_pred HHHHHhCCCceeEEEEeC-CCCCcceEEehhhHHhhccCHHHHHhhcCC-CCCC--CeEEeCCCCHHHHHHHhcccccce
Q psy13247 20 LSKFLQDESLVDVTLACN-WENSDIKTYKAHQMILSACSPYFEKLFLEN-THPH--PIIFLRDIHHKELEVILHFMYRGE 95 (187)
Q Consensus 20 l~~~~~~~~~~Dv~i~v~-~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~-e~~~--~~i~l~~~~~~~~~~lL~~~Yt~~ 95 (187)
|+++++++.++|++|.++ + ..|+|||.+|+++|+||+.||.++ .... ..|.++++++++|..+++|+|+|.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~-----~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~ 75 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDG-----KTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGE 75 (111)
T ss_dssp HHHHHHHTTS--EEEEETTT-----EEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSE
T ss_pred ChHHHcCCCCCCEEEEECCC-----EEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCc
Confidence 578999999999999999 7 999999999999999999999987 2333 368889999999999999999999
Q ss_pred eccC-cccHHHHHHHHhhcCccchHhhcCC
Q psy13247 96 VNIK-QDSLKQVLETAKVLMVRGLCEENSP 124 (187)
Q Consensus 96 ~~i~-~~~~~~ll~~A~~~~~~~L~~~c~~ 124 (187)
+.++ .+++.+++.+|++|+++.|++.|..
T Consensus 76 ~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~ 105 (111)
T PF00651_consen 76 IEINSDENVEELLELADKLQIPELKKACEK 105 (111)
T ss_dssp EEEE-TTTHHHHHHHHHHTTBHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9998 9999999999999999999999944
No 6
>KOG4350|consensus
Probab=99.85 E-value=3.9e-22 Score=159.08 Aligned_cols=165 Identities=19% Similarity=0.271 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHhCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHhccc
Q psy13247 14 SNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLEN--THPHPIIFLRDIHHKELEVILHFM 91 (187)
Q Consensus 14 ~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~--e~~~~~i~l~~~~~~~~~~lL~~~ 91 (187)
..+.+.+.+++-+..++||+++|++ ++|+|||+|||++|.||++|+.++ |+.+..|.|.+-..++|+.+|+||
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~-----~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYi 103 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVED-----TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYI 103 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEec-----cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHH
Confidence 3457888899999999999999999 999999999999999999999998 888889999999999999999999
Q ss_pred ccceeccC---cccHHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhh--------hhhhcC
Q psy13247 92 YRGEVNIK---QDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMET--------GAQYCD 160 (187)
Q Consensus 92 Yt~~~~i~---~~~~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~ 160 (187)
|||++.++ .+-..+.+.+|.+|+.++|..+....+. +++..++..-.+..+..++...+.+. +.+...
T Consensus 104 Ytg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~-~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~ 182 (620)
T KOG4350|consen 104 YTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLK-EILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLE 182 (620)
T ss_pred hhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhc
Confidence 99999874 4557899999999999999888744321 22222222222233333444444444 445555
Q ss_pred cccccCCChhHhhhhccCCCcccc
Q psy13247 161 RENYVNSPKLHTSSSMSSSLSEVP 184 (187)
Q Consensus 161 ~~~f~~l~~~~l~~ils~~~L~v~ 184 (187)
.+.|..|+++.|.++|..+....+
T Consensus 183 ~~sFn~LSk~sL~e~l~RDsFfAp 206 (620)
T KOG4350|consen 183 DPSFNRLSKDSLKELLARDSFFAP 206 (620)
T ss_pred CcchhhhhHHHHHHHHhhhcccch
Confidence 599999999999999998875443
No 7
>KOG2075|consensus
Probab=99.85 E-value=8.2e-22 Score=159.76 Aligned_cols=179 Identities=17% Similarity=0.261 Sum_probs=140.6
Q ss_pred eeeeCCChhHHHHHHHHHHhCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCC--CCCCCeEEeCCCCHHH
Q psy13247 6 CLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLEN--THPHPIIFLRDIHHKE 83 (187)
Q Consensus 6 ~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~--e~~~~~i~l~~~~~~~ 83 (187)
-.-|+.-..++..+...++++...+|+.++|++..+...++++||.+|+..|.+|++||.++ +....+|+++++++.+
T Consensus 91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaa 170 (521)
T KOG2075|consen 91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAA 170 (521)
T ss_pred CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhH
Confidence 34566667889999999999999999999998643344799999999999999999999998 5557899999999999
Q ss_pred HHHHhcccccceeccCcccHHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhhhhhhcCc--
Q psy13247 84 LEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQYCDR-- 161 (187)
Q Consensus 84 ~~~lL~~~Yt~~~~i~~~~~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 161 (187)
|..+|+|+|++.+.+..++++.++.+|++|.++.|.+.|.++++...+..+.+......+.......+...+.+.+..
T Consensus 171 Fl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~ 250 (521)
T KOG2075|consen 171 FLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSF 250 (521)
T ss_pred hHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999774433333222111111213333333444444443333
Q ss_pred ------ccccCCC--hhHhhhhccCCCcccc
Q psy13247 162 ------ENYVNSP--KLHTSSSMSSSLSEVP 184 (187)
Q Consensus 162 ------~~f~~l~--~~~l~~ils~~~L~v~ 184 (187)
|.|...+ .+.+.++|+++.|.+.
T Consensus 251 ~~al~~EGf~did~~~dt~~evl~r~~l~~~ 281 (521)
T KOG2075|consen 251 EDALTPEGFCDIDSTRDTYEEVLRRDTLEAR 281 (521)
T ss_pred HhhhCccceeehhhHHHHHHHHHhhcccchh
Confidence 8888888 9999999999999876
No 8
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.79 E-value=5.9e-19 Score=115.31 Aligned_cols=87 Identities=36% Similarity=0.708 Sum_probs=82.0
Q ss_pred eEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCCC--CCCeEEeCCCCHHHHHHHhcccccceeccCcccHHHHHH
Q psy13247 31 DVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTH--PHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLE 108 (187)
Q Consensus 31 Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e~--~~~~i~l~~~~~~~~~~lL~~~Yt~~~~i~~~~~~~ll~ 108 (187)
|+++.++| +.+++||.+|+++|+||++|+.++.. ....+.++++++.+|+.+++|+|++++.++..++..++.
T Consensus 1 dv~i~v~~-----~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~ 75 (90)
T smart00225 1 DVTLVVGG-----KKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLE 75 (90)
T ss_pred CeEEEECC-----EEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHH
Confidence 78899999 99999999999999999999998633 678899999999999999999999999999999999999
Q ss_pred HHhhcCccchHhhc
Q psy13247 109 TAKVLMVRGLCEEN 122 (187)
Q Consensus 109 ~A~~~~~~~L~~~c 122 (187)
+|++|+++.|++.|
T Consensus 76 ~a~~~~~~~l~~~c 89 (90)
T smart00225 76 LADYLQIPGLVELC 89 (90)
T ss_pred HHHHHCcHHHHhhh
Confidence 99999999999998
No 9
>KOG4591|consensus
Probab=99.72 E-value=2.7e-18 Score=125.53 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=129.7
Q ss_pred eeCCChhHHHHHHHHHHhCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHH
Q psy13247 8 KWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVI 87 (187)
Q Consensus 8 ~~~~~~~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e~~~~~i~l~~~~~~~~~~l 87 (187)
+..++.++++.-...++..+.|||++|.++|+ +.+.+++||.||+++|++++---. +.....+..+.++++++|...
T Consensus 45 s~dSF~SRLLaitadL~Ek~qfSDlk~K~~gn--s~k~i~AHKfVLAARsD~WkfaN~-~dekse~~~~dDad~Ea~~t~ 121 (280)
T KOG4591|consen 45 SPDSFISRLLAITADLLEKEQFSDLKFKFAGN--SDKHIPAHKFVLAARSDFWKFANG-GDEKSEELDLDDADFEAFHTA 121 (280)
T ss_pred CchhHHHHHHHHHHHHhhcccccceeEEecCC--ccccCchhhhhhhhhcchhhhccC-CCcchhhhcccccCHHHHHHh
Confidence 45678889999999999999999999999863 238999999999999999874322 233445777889999999999
Q ss_pred hcccccceeccCccc--HHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhhhhhhcCc----
Q psy13247 88 LHFMYRGEVNIKQDS--LKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQYCDR---- 161 (187)
Q Consensus 88 L~~~Yt~~~~i~~~~--~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---- 161 (187)
+|||||+++++..+. +.++.++|..|++..|++.|.+-+ ...+...++...+..+...+...+...+..++..
T Consensus 122 iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l-~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~d 200 (280)
T KOG4591|consen 122 IRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGL-GALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDD 200 (280)
T ss_pred heeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 999999999986554 688999999999999999995521 1122233344445555555555555556665544
Q ss_pred ---ccccCCChhHhhhhccCCC
Q psy13247 162 ---ENYVNSPKLHTSSSMSSSL 180 (187)
Q Consensus 162 ---~~f~~l~~~~l~~ils~~~ 180 (187)
+.|..++..++..++.+..
T Consensus 201 L~~a~FaqMs~aLLYklId~kT 222 (280)
T KOG4591|consen 201 LGKADFAQMSAALLYKLIDGKT 222 (280)
T ss_pred cChHHHHhccHHHHHHHHcCCC
Confidence 8899999999998887664
No 10
>KOG4682|consensus
Probab=99.58 E-value=1.6e-15 Score=121.20 Aligned_cols=153 Identities=21% Similarity=0.201 Sum_probs=121.7
Q ss_pred HHHHhCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCC--CCCCCeEEeC----CCCHHHHHHHhcccccc
Q psy13247 21 SKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLEN--THPHPIIFLR----DIHHKELEVILHFMYRG 94 (187)
Q Consensus 21 ~~~~~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~--e~~~~~i~l~----~~~~~~~~~lL~~~Yt~ 94 (187)
..++.+|..|||.+.+-| .+.++||.-|.. |+||++||.|. |++...|.+. .++..++...+.-+|.+
T Consensus 61 q~lf~q~enSDv~l~alg-----~eWrlHk~yL~Q-S~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~d 134 (488)
T KOG4682|consen 61 QNLFLQGENSDVILEALG-----FEWRLHKPYLFQ-SEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRD 134 (488)
T ss_pred HHHHhcCCCcceehhhcc-----ceeeeeeeeeec-cHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhh
Confidence 357889999999999999 999999999985 89999999986 7777777774 69999999999999999
Q ss_pred eeccCcccHHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCC-----CcccchhHHHHHhhhhhhhcCc--------
Q psy13247 95 EVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPS-----VTKDDVNTRKRKMETGAQYCDR-------- 161 (187)
Q Consensus 95 ~~~i~~~~~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~-------- 161 (187)
++.|..+.+..++.+|+.+++++|.+.|.. .+.+. +.+. +..+..++...+.+.+.+....
T Consensus 135 EveI~l~dv~gvlAaA~~lqldgl~qrC~e-----vMie~-lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~ 208 (488)
T KOG4682|consen 135 EVEIKLSDVVGVLAAACLLQLDGLIQRCGE-----VMIET-LSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNV 208 (488)
T ss_pred heeccHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHh-cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhH
Confidence 999999999999999999999999999944 33333 3322 2333333333333334333322
Q ss_pred ccccCCChhHhhhhccCCCccccC
Q psy13247 162 ENYVNSPKLHTSSSMSSSLSEVPA 185 (187)
Q Consensus 162 ~~f~~l~~~~l~~ils~~~L~v~~ 185 (187)
.-+.++|.++|..++.|++|.|=.
T Consensus 209 q~l~ei~~~Lm~~ll~SpnLfvmq 232 (488)
T KOG4682|consen 209 QLLKEISINLMKQLLGSPNLFVMQ 232 (488)
T ss_pred HHHHhcCHHHHHHHhCCCCeEEEE
Confidence 677889999999999999998743
No 11
>KOG0783|consensus
Probab=98.90 E-value=2.2e-09 Score=93.09 Aligned_cols=102 Identities=25% Similarity=0.433 Sum_probs=76.8
Q ss_pred HHHHHHHHH----hCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCC--------------CCCCCeEEeC
Q psy13247 16 LTDVLSKFL----QDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLEN--------------THPHPIIFLR 77 (187)
Q Consensus 16 l~~~l~~~~----~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~--------------e~~~~~i~l~ 77 (187)
+...+.+++ ....+.||+|.||+ .-|++||.||+++|++|+++|... .+....|.++
T Consensus 541 fe~sf~kLl~e~~~~ds~hDVtf~vg~-----~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve 615 (1267)
T KOG0783|consen 541 FEGSFPKLLSEENYKDSFHDVTFYVGT-----SMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE 615 (1267)
T ss_pred chhhhHHHhhccccccccceEEEEecC-----eecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec
Confidence 334444444 34567799999999 999999999999999999999764 1334567788
Q ss_pred CCCHHHHHHHhccccccee--------------ccCcccH-------HHHHHHHhhcCccchHhhc
Q psy13247 78 DIHHKELEVILHFMYRGEV--------------NIKQDSL-------KQVLETAKVLMVRGLCEEN 122 (187)
Q Consensus 78 ~~~~~~~~~lL~~~Yt~~~--------------~i~~~~~-------~~ll~~A~~~~~~~L~~~c 122 (187)
++.+..|+.+|+||||+.. +.-..|. ..+...+.++.+..|....
T Consensus 616 ~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 616 DIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred cCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 9999999999999999832 1112333 3488888888887777655
No 12
>KOG0783|consensus
Probab=98.89 E-value=1.8e-10 Score=99.67 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=94.6
Q ss_pred CCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCCCCCCeEEeCC--CCHHHHHHHhcccc-cceecc-----
Q psy13247 27 ESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRD--IHHKELEVILHFMY-RGEVNI----- 98 (187)
Q Consensus 27 ~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e~~~~~i~l~~--~~~~~~~~lL~~~Y-t~~~~i----- 98 (187)
++.-|+.|...++ +.++|||++|++|++||..||..-....+.|...+ +..+.+..+|+|+| ++++.+
T Consensus 708 ~e~~d~~i~~KDG----kvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~ 783 (1267)
T KOG0783|consen 708 EETMDTVIKLKDG----KVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLK 783 (1267)
T ss_pred ccceeEEEEecCC----cCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccc
Confidence 4444777777441 88999999999999999999987632233355554 55889999999999 455543
Q ss_pred CcccHHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhhhhhhcCc
Q psy13247 99 KQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQYCDR 161 (187)
Q Consensus 99 ~~~~~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (187)
..+.+-.++.+||.|.+..|+..|+..+....- ..++...+.++..++++.|+..|.+|+..
T Consensus 784 ~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~ 845 (1267)
T KOG0783|consen 784 ESDFMFEILSIADQLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICH 845 (1267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345577899999999999999999654322221 12233336667778999999999998766
No 13
>KOG2838|consensus
Probab=98.55 E-value=1.2e-07 Score=73.21 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCCCCCC----eEEeCCCCHHHHHHHh
Q psy13247 13 TSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHP----IIFLRDIHHKELEVIL 88 (187)
Q Consensus 13 ~~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e~~~~----~i~l~~~~~~~~~~lL 88 (187)
+.+++.++...+......|+-+.... +-|++||++|+++||+|+.+..+++.... .|.+.+++.+.|+.+|
T Consensus 114 a~sf~kD~ad~ye~k~c~dldiiFke-----TcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafL 188 (401)
T KOG2838|consen 114 ANSFLKDFADGYERKVCGDLDIIFKE-----TCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFL 188 (401)
T ss_pred hhHHHHHHhhhhheeeeccceeeeee-----ccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHH
Confidence 34677777777888888899999999 99999999999999999999887754443 3556689999999999
Q ss_pred cccccceec---cCcccHHHHHHHHhhcCcc
Q psy13247 89 HFMYRGEVN---IKQDSLKQVLETAKVLMVR 116 (187)
Q Consensus 89 ~~~Yt~~~~---i~~~~~~~ll~~A~~~~~~ 116 (187)
.|+|+|+.- ....|+..|-.+..-||++
T Consensus 189 h~l~tgEfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 189 HSLITGEFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HHHHhcccchhhcCCchHHHHHHHHHhhCCc
Confidence 999999863 3455676777777777776
No 14
>KOG2716|consensus
Probab=98.47 E-value=3.9e-07 Score=69.41 Aligned_cols=87 Identities=25% Similarity=0.473 Sum_probs=74.5
Q ss_pred EEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCC---CC-CCCeEEeCCCCHHHHHHHhcccccceeccC--cccHHH
Q psy13247 32 VTLACNWENSDIKTYKAHQMILSACSPYFEKLFLEN---TH-PHPIIFLRDIHHKELEVILHFMYRGEVNIK--QDSLKQ 105 (187)
Q Consensus 32 v~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~---e~-~~~~i~l~~~~~~~~~~lL~~~Yt~~~~i~--~~~~~~ 105 (187)
+.+.||| +.|...+.-|.....+|++|+.+. +. ..+.|.+ |-+|.-|..+|+||-.|++.++ ...+.+
T Consensus 7 vkLnvGG-----~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~E 80 (230)
T KOG2716|consen 7 VKLNVGG-----TIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKE 80 (230)
T ss_pred EEEecCC-----eEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHH
Confidence 5578999 999999999999999999999987 21 2234555 5799999999999999999885 455789
Q ss_pred HHHHHhhcCccchHhhcCC
Q psy13247 106 VLETAKVLMVRGLCEENSP 124 (187)
Q Consensus 106 ll~~A~~~~~~~L~~~c~~ 124 (187)
|+.-|.+|.+++|++.|..
T Consensus 81 l~~EA~fYlL~~Lv~~C~~ 99 (230)
T KOG2716|consen 81 LLREAEFYLLDGLVELCQS 99 (230)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999965
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=98.27 E-value=1.2e-06 Score=57.98 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=65.6
Q ss_pred EEEEeCCCCCcceEEehhhHHhhcc-CHHHHHhhcCC-----CCCCCeEEeCCCCHHHHHHHhccccc-ceeccC-cccH
Q psy13247 32 VTLACNWENSDIKTYKAHQMILSAC-SPYFEKLFLEN-----THPHPIIFLRDIHHKELEVILHFMYR-GEVNIK-QDSL 103 (187)
Q Consensus 32 v~i~v~~~~~~~~~~~~Hk~vL~~~-S~~F~~~~~~~-----e~~~~~i~l~~~~~~~~~~lL~~~Yt-~~~~i~-~~~~ 103 (187)
|.+.||| +.|.+-+..|... ..+|.+|+.++ ......+.+ |-++..|+.||+|+.+ +.+..+ ...+
T Consensus 1 V~lNVGG-----~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~ 74 (94)
T PF02214_consen 1 VRLNVGG-----TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICL 74 (94)
T ss_dssp EEEEETT-----EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-H
T ss_pred CEEEECC-----EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhH
Confidence 6789999 9999999999944 45888888853 344566666 5799999999999999 666664 5668
Q ss_pred HHHHHHHhhcCccch-Hhhc
Q psy13247 104 KQVLETAKVLMVRGL-CEEN 122 (187)
Q Consensus 104 ~~ll~~A~~~~~~~L-~~~c 122 (187)
..++.-|.+|+++.| ++.|
T Consensus 75 ~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 75 EELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHHHHT-HHHHBHHC
T ss_pred HHHHHHHHHcCCCccccCCC
Confidence 889999999999999 8877
No 16
>KOG2838|consensus
Probab=98.11 E-value=3.3e-06 Score=65.40 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=77.5
Q ss_pred ChhHHHHHHHHHHhCCCceeEEEE-eC-C---------CCCcceEEehhhHHhhccCHHHHHhhcCC-----CC------
Q psy13247 12 HTSNLTDVLSKFLQDESLVDVTLA-CN-W---------ENSDIKTYKAHQMILSACSPYFEKLFLEN-----TH------ 69 (187)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~Dv~i~-v~-~---------~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~-----e~------ 69 (187)
...++-.+++.++..-..-|+.+. +. | ++....+++||++|.+++|++|+.++... |.
T Consensus 218 ~~kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr 297 (401)
T KOG2838|consen 218 CFKKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLR 297 (401)
T ss_pred CchhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhccccccccccc
Confidence 345666777777776555554444 32 2 12333479999999999999999888753 21
Q ss_pred CCCeEEeCC-CCHHH-HHHHhcccccceeccCc----------------------------ccHHHHHHHHhhcCccchH
Q psy13247 70 PHPIIFLRD-IHHKE-LEVILHFMYRGEVNIKQ----------------------------DSLKQVLETAKVLMVRGLC 119 (187)
Q Consensus 70 ~~~~i~l~~-~~~~~-~~~lL~~~Yt~~~~i~~----------------------------~~~~~ll~~A~~~~~~~L~ 119 (187)
....|.+.+ +=|.+ -..+|.++||+.++.+. ..+++|+.+|.+|.+.-|.
T Consensus 298 ~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLa 377 (401)
T KOG2838|consen 298 RPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLA 377 (401)
T ss_pred CCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 223566654 44444 45689999998774321 3467899999999999999
Q ss_pred hhcCC
Q psy13247 120 EENSP 124 (187)
Q Consensus 120 ~~c~~ 124 (187)
+.|..
T Consensus 378 Qa~e~ 382 (401)
T KOG2838|consen 378 QACED 382 (401)
T ss_pred HHHHH
Confidence 99944
No 17
>KOG0511|consensus
Probab=97.95 E-value=6.8e-06 Score=66.29 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=61.5
Q ss_pred eEEehhhHHhhccCHHHHHhhcCC--CCC----CCeEEeCCCCHHHHHHHhcccccceeccCcccHHHHHHHHhhcCcc
Q psy13247 44 KTYKAHQMILSACSPYFEKLFLEN--THP----HPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVR 116 (187)
Q Consensus 44 ~~~~~Hk~vL~~~S~~F~~~~~~~--e~~----~~~i~l~~~~~~~~~~lL~~~Yt~~~~i~~~~~~~ll~~A~~~~~~ 116 (187)
.++|||+.++..+ +||+.||.|+ +++ .+...++.....+.+.+++|+|+++.+|..+-+.+++..|+++.+.
T Consensus 301 ~RyP~hla~i~R~-eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARILRV-EYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHHHHH-HHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhh
Confidence 5799999999965 7999999998 433 2345667788899999999999999999999999999999998766
No 18
>KOG3473|consensus
Probab=97.89 E-value=6.9e-05 Score=48.96 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=59.4
Q ss_pred eEEehhhHHhhccCHHHHHhhcCC----CCCCCeEEeCCCCHHHHHHHhccc-----ccce------eccCcccHHHHHH
Q psy13247 44 KTYKAHQMILSACSPYFEKLFLEN----THPHPIIFLRDIHHKELEVILHFM-----YRGE------VNIKQDSLKQVLE 108 (187)
Q Consensus 44 ~~~~~Hk~vL~~~S~~F~~~~~~~----e~~~~~i~l~~~~~~~~~~lL~~~-----Yt~~------~~i~~~~~~~ll~ 108 (187)
.+|-..|-+-. -|+-.|+|+.++ +...++|.++++....++.+.+|+ |++. ..|+++-+.+||.
T Consensus 27 hefiikre~Am-tSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~ 105 (112)
T KOG3473|consen 27 HEFIIKREHAM-TSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLM 105 (112)
T ss_pred cEEEEeehhhh-hhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHH
Confidence 78888777654 489999999987 667789999999999999999998 6655 3577888999999
Q ss_pred HHhhcCc
Q psy13247 109 TAKVLMV 115 (187)
Q Consensus 109 ~A~~~~~ 115 (187)
+|+++.+
T Consensus 106 aAn~Lec 112 (112)
T KOG3473|consen 106 AANYLEC 112 (112)
T ss_pred HhhhhcC
Confidence 9998853
No 19
>KOG2714|consensus
Probab=97.38 E-value=0.00052 Score=56.44 Aligned_cols=85 Identities=15% Similarity=0.204 Sum_probs=67.6
Q ss_pred eEEEEeCCCCCcceEEehhhHHhhccC--HHHHHhhcCC---CCCCCeEEeCCCCHHHHHHHhcccccceeccCcccHHH
Q psy13247 31 DVTLACNWENSDIKTYKAHQMILSACS--PYFEKLFLEN---THPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQ 105 (187)
Q Consensus 31 Dv~i~v~~~~~~~~~~~~Hk~vL~~~S--~~F~~~~~~~---e~~~~~i~l~~~~~~~~~~lL~~~Yt~~~~i~~~~~~~ 105 (187)
=|.+.||| +.|...+--|+... .+|-+++.+. .....-..+-|-+|+.|..||+|+-||++.++......
T Consensus 12 ~V~lNVGG-----riF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~ 86 (465)
T KOG2714|consen 12 RVKLNVGG-----RIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPER 86 (465)
T ss_pred eEEEecCc-----eEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhh
Confidence 37789999 99999999888776 4888888754 22222234446799999999999999999997766666
Q ss_pred HHH-HHhhcCccchHh
Q psy13247 106 VLE-TAKVLMVRGLCE 120 (187)
Q Consensus 106 ll~-~A~~~~~~~L~~ 120 (187)
++. -|.+||+.+|.+
T Consensus 87 llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 87 LLHDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhhhcCcHHHHH
Confidence 555 999999999998
No 20
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.33 E-value=0.00027 Score=47.06 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=46.1
Q ss_pred HHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhhhhhhcCcccccCCChhHhhhhccCCCccc
Q psy13247 104 KQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQYCDRENYVNSPKLHTSSSMSSSLSEV 183 (187)
Q Consensus 104 ~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~l~~~~l~~ils~~~L~v 183 (187)
.+++..|..|+++.|.+.|.+ .+..++..+..+++|..||.+.+..||++++++|
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~-------------------------~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v 56 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLR-------------------------FIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNV 56 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHH-------------------------HHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--E
T ss_pred hhHHHHHHHcChHHHHHHHHH-------------------------HHHHHHHHHccchhhhcCCHHHHHHHHhcccccc
Confidence 467889999999999999933 4455677777789999999999999999999999
Q ss_pred cCCC
Q psy13247 184 PAAQ 187 (187)
Q Consensus 184 ~~~~ 187 (187)
.+|.
T Consensus 57 ~~E~ 60 (103)
T PF07707_consen 57 SSED 60 (103)
T ss_dssp CTCC
T ss_pred ccHH
Confidence 8874
No 21
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.20 E-value=0.00023 Score=56.69 Aligned_cols=84 Identities=12% Similarity=0.226 Sum_probs=72.7
Q ss_pred cceEEehhhHHhhccCHHHHHhhcC---CCCCCCeEEeC-CCCHHHHHHHhcccccceeccCcccHHHHHHHHhhcCccc
Q psy13247 42 DIKTYKAHQMILSACSPYFEKLFLE---NTHPHPIIFLR-DIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRG 117 (187)
Q Consensus 42 ~~~~~~~Hk~vL~~~S~~F~~~~~~---~e~~~~~i~l~-~~~~~~~~~lL~~~Yt~~~~i~~~~~~~ll~~A~~~~~~~ 117 (187)
..+.|.|.+-.|...=.||+..+.. ..+..+.|.|. ..|...|+=+++|+......+++.||..|+.-|++++|+.
T Consensus 12 ~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 12 EKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES 91 (317)
T ss_pred cceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH
Confidence 3478999999999999999999965 34444556665 5899999999999999999999999999999999999999
Q ss_pred hHhhcCCC
Q psy13247 118 LCEENSPN 125 (187)
Q Consensus 118 L~~~c~~~ 125 (187)
|++.|..+
T Consensus 92 Lve~cl~y 99 (317)
T PF11822_consen 92 LVEECLQY 99 (317)
T ss_pred HHHHHHHH
Confidence 99999554
No 22
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.06 E-value=0.0022 Score=43.14 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=58.8
Q ss_pred EEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCC---CCCCeEEeCCCCHHHHHHHhccccccee------------
Q psy13247 32 VTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENT---HPHPIIFLRDIHHKELEVILHFMYRGEV------------ 96 (187)
Q Consensus 32 v~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e---~~~~~i~l~~~~~~~~~~lL~~~Yt~~~------------ 96 (187)
+++...++ ..|.+.+.+.. .|..++.|+.+.. .....|.+++++...++.+++|++-..-
T Consensus 4 v~L~S~Dg----~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~ 78 (104)
T smart00512 4 IKLISSDG----EVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIP 78 (104)
T ss_pred EEEEeCCC----CEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCcccccccc
Confidence 45555332 89999999875 6899999998642 1225899999999999999999963211
Q ss_pred -------ccCcccHHHHHHHHhhcCc
Q psy13247 97 -------NIKQDSLKQVLETAKVLMV 115 (187)
Q Consensus 97 -------~i~~~~~~~ll~~A~~~~~ 115 (187)
.++.+.+.+|+.||.++++
T Consensus 79 ~wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 79 TWDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1455578899999998874
No 23
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.95 E-value=0.00087 Score=44.17 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=44.1
Q ss_pred HHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhhhhhhcCcccccCCChhHhhhhccCCCcccc
Q psy13247 105 QVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQYCDRENYVNSPKLHTSSSMSSSLSEVP 184 (187)
Q Consensus 105 ~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~l~~~~l~~ils~~~L~v~ 184 (187)
.++.+|+.|+.+.|.+.|.. ...+.+..+...++|..||.+.+..+|++++|+|.
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~-------------------------~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~ 57 (101)
T smart00875 3 GIRRFAELYGLEELLEKALR-------------------------FILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVP 57 (101)
T ss_pred hHHHHHHHhChHHHHHHHHH-------------------------HHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCC
Confidence 46778888999999988833 22233444455689999999999999999999987
Q ss_pred CC
Q psy13247 185 AA 186 (187)
Q Consensus 185 ~~ 186 (187)
+|
T Consensus 58 ~E 59 (101)
T smart00875 58 SE 59 (101)
T ss_pred CH
Confidence 65
No 24
>KOG1665|consensus
Probab=96.65 E-value=0.0046 Score=46.94 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=69.1
Q ss_pred eEEEEeCCCCCcceEEehhhHHhhccCH--HHHHhhcCC-----CCCCCeEEeCCCCHHHHHHHhcccccceecc-Cccc
Q psy13247 31 DVTLACNWENSDIKTYKAHQMILSACSP--YFEKLFLEN-----THPHPIIFLRDIHHKELEVILHFMYRGEVNI-KQDS 102 (187)
Q Consensus 31 Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~--~F~~~~~~~-----e~~~~~i~l~~~~~~~~~~lL~~~Yt~~~~i-~~~~ 102 (187)
=|.+.++| +.|...+.-|..+-| .+.+||.+. +..++. .+-|-++.-|+.||.|+-.|++.. +.-+
T Consensus 10 ~vrlnigG-----k~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa-~lIDRsp~yFepIlNyLr~Gq~~~~s~i~ 83 (302)
T KOG1665|consen 10 MVRLNIGG-----KKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGA-VLIDRSPKYFEPILNYLRDGQIPSLSDID 83 (302)
T ss_pred hheeecCC-----eEEEEeehhhcccCchHHHHHHHccCCCccccccCce-EEEccCchhhHHHHHHHhcCceeecCCcc
Confidence 35677888 888877776666644 788899875 233334 444679999999999999998754 7778
Q ss_pred HHHHHHHHhhcCccchHhhcCC
Q psy13247 103 LKQVLETAKVLMVRGLCEENSP 124 (187)
Q Consensus 103 ~~~ll~~A~~~~~~~L~~~c~~ 124 (187)
+..+++.|++|++-.|++..+.
T Consensus 84 ~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 84 CLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHHhhHHhhHhHHhHHhh
Confidence 9999999999999999998854
No 25
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.43 E-value=0.019 Score=34.82 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=43.8
Q ss_pred EEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhcccc
Q psy13247 32 VTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMY 92 (187)
Q Consensus 32 v~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e~~~~~i~l~~~~~~~~~~lL~~~Y 92 (187)
+++...++ ..|.+.+.+.. .|..++.|+.+.......|.+++++...++.+++|.+
T Consensus 3 v~L~SsDg----~~f~V~~~~a~-~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDG----QEFEVSREAAK-QSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTS----EEEEEEHHHHT-TSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCC----CEEEeeHHHHH-HhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHH
Confidence 45555442 89999999887 5899999998753333379999999999999999985
No 26
>KOG2715|consensus
Probab=96.19 E-value=0.0068 Score=43.89 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=71.4
Q ss_pred CCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCC------CCCCeEEeCCCCHHHHHHHhcccccceeccCc
Q psy13247 27 ESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENT------HPHPIIFLRDIHHKELEVILHFMYRGEVNIKQ 100 (187)
Q Consensus 27 ~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e------~~~~~i~l~~~~~~~~~~lL~~~Yt~~~~i~~ 100 (187)
|.-.=|.+.||| +.|..-|--|...+.-|-..|...+ +...--.+-|-+|.-|..+|+|+-.|++.++.
T Consensus 18 g~s~wVRlNVGG-----t~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~ 92 (210)
T KOG2715|consen 18 GVSLWVRLNVGG-----TVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK 92 (210)
T ss_pred CceEEEEEecCC-----EEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh
Confidence 433456778899 9999999999999866666665431 22223456678999999999999999999988
Q ss_pred ccHHHHHHHHhhcCccchHhhcC
Q psy13247 101 DSLKQVLETAKVLMVRGLCEENS 123 (187)
Q Consensus 101 ~~~~~ll~~A~~~~~~~L~~~c~ 123 (187)
-.-..+|.-|++|.++.|++...
T Consensus 93 l~eeGvL~EAefyn~~~li~lik 115 (210)
T KOG2715|consen 93 LSEEGVLEEAEFYNDPSLIQLIK 115 (210)
T ss_pred hhhhccchhhhccCChHHHHHHH
Confidence 55556999999999999988773
No 27
>KOG0511|consensus
Probab=96.17 E-value=0.0017 Score=52.78 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=63.7
Q ss_pred HHHHHHhCCCc---eeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhcccccce
Q psy13247 19 VLSKFLQDESL---VDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGE 95 (187)
Q Consensus 19 ~l~~~~~~~~~---~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e~~~~~i~l~~~~~~~~~~lL~~~Yt~~ 95 (187)
.+..++++.-+ .|+++..+.+ +.|-|||..|+++|.+|...+..-......|+-..+-+.+|..+++|+|-+.
T Consensus 136 hi~s~l~dt~l~~~~di~f~~q~g----~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~~ 211 (516)
T KOG0511|consen 136 HIQSSLRDTFLGCCHDIDFLQQEG----ANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLNT 211 (516)
T ss_pred HHHHHhhccccccccchHHHhhcc----ccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHhh
Confidence 34444444333 3888888642 8889999999999998765443323344456555688899999999999762
Q ss_pred eccCcccHHHHHHHHhhcCccchHh
Q psy13247 96 VNIKQDSLKQVLETAKVLMVRGLCE 120 (187)
Q Consensus 96 ~~i~~~~~~~ll~~A~~~~~~~L~~ 120 (187)
=-+-.+.-..|+.+..+|..+.|..
T Consensus 212 na~~~~qynallsi~~kF~~e~l~~ 236 (516)
T KOG0511|consen 212 NAEWKDQYNALLSIEVKFSKEKLSL 236 (516)
T ss_pred hhhhhhHHHHHHhhhhhccHHHhHH
Confidence 2222333456667777776665443
No 28
>KOG1987|consensus
Probab=95.41 E-value=0.0049 Score=49.13 Aligned_cols=82 Identities=21% Similarity=0.123 Sum_probs=65.6
Q ss_pred eEEehhhHHhhccCHHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHhcccccceeccCcccHH---HHHHHHhhcCccch
Q psy13247 44 KTYKAHQMILSACSPYFEKLFLEN--THPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLK---QVLETAKVLMVRGL 118 (187)
Q Consensus 44 ~~~~~Hk~vL~~~S~~F~~~~~~~--e~~~~~i~l~~~~~~~~~~lL~~~Yt~~~~i~~~~~~---~ll~~A~~~~~~~L 118 (187)
+.+.+|+.+++++++.|+.|+... ......+.+.+.++..++.+..|.|+..-.-..+... .++.+|..++.+.|
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~l 189 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHL 189 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHH
Confidence 569999999999999999999876 3344455788899999999999999865433333333 67889999999999
Q ss_pred HhhcCCC
Q psy13247 119 CEENSPN 125 (187)
Q Consensus 119 ~~~c~~~ 125 (187)
...|...
T Consensus 190 k~~~~~~ 196 (297)
T KOG1987|consen 190 KLACMPV 196 (297)
T ss_pred HHHHHHH
Confidence 9999553
No 29
>KOG1724|consensus
Probab=94.34 E-value=0.074 Score=38.70 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=62.0
Q ss_pred eEEehhhHHhhccCHHHHHhhcCCCCCC--CeEEeCCCCHHHHHHHhccccccee-------------------------
Q psy13247 44 KTYKAHQMILSACSPYFEKLFLENTHPH--PIIFLRDIHHKELEVILHFMYRGEV------------------------- 96 (187)
Q Consensus 44 ~~~~~Hk~vL~~~S~~F~~~~~~~e~~~--~~i~l~~~~~~~~~~lL~~~Yt~~~------------------------- 96 (187)
..|.+-..+... |..+..++....... ..|.++++....|..+++|.+.-+-
T Consensus 15 ~~f~ve~~~a~~-s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Fl 93 (162)
T KOG1724|consen 15 EIFEVEEEVARQ-SQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFL 93 (162)
T ss_pred ceeehhHHHHHH-hHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHH
Confidence 788887777664 778888876543333 3799999999999999999985221
Q ss_pred ccCcccHHHHHHHHhhcCccchHhhcCC
Q psy13247 97 NIKQDSLKQVLETAKVLMVRGLCEENSP 124 (187)
Q Consensus 97 ~i~~~~~~~ll~~A~~~~~~~L~~~c~~ 124 (187)
.+...++.+|..||.++.+++|...|++
T Consensus 94 k~d~~tLfdli~AAnyLdi~gLl~~~ck 121 (162)
T KOG1724|consen 94 KVDQGTLFDLILAANYLDIKGLLDLTCK 121 (162)
T ss_pred hcCHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 1233568899999999999999999955
No 30
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.35 Score=33.62 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=60.0
Q ss_pred eEEehhhHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhcccccceec-------------------------c
Q psy13247 44 KTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVN-------------------------I 98 (187)
Q Consensus 44 ~~~~~Hk~vL~~~S~~F~~~~~~~e~~~~~i~l~~~~~~~~~~lL~~~Yt~~~~-------------------------i 98 (187)
..|.+-+.+ |-+|-..+.|+.......-.+..+++...+|..+++|+-...-+ +
T Consensus 12 e~F~vd~~i-AerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~v 90 (158)
T COG5201 12 EIFRVDENI-AERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEV 90 (158)
T ss_pred cEEEehHHH-HHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHh
Confidence 788877765 56788888888765555556777899999999999999532111 1
Q ss_pred CcccHHHHHHHHhhcCccchHhhcCC
Q psy13247 99 KQDSLKQVLETAKVLMVRGLCEENSP 124 (187)
Q Consensus 99 ~~~~~~~ll~~A~~~~~~~L~~~c~~ 124 (187)
+.+.+.++..+|.++.++.|.+.|++
T Consensus 91 DqemL~eI~laaNYL~ikpLLd~gCK 116 (158)
T COG5201 91 DQEMLLEICLAANYLEIKPLLDLGCK 116 (158)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHH
Confidence 22446788899999999999999955
No 31
>KOG3840|consensus
Probab=86.38 E-value=1.2 Score=35.80 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=59.5
Q ss_pred eEEEEeCCCCCcceEEehhhHHhhccCH-HHHHhhcCC-----CCCCCeEEeC-CCCHHHHHHHhcccccceecc-Cccc
Q psy13247 31 DVTLACNWENSDIKTYKAHQMILSACSP-YFEKLFLEN-----THPHPIIFLR-DIHHKELEVILHFMYRGEVNI-KQDS 102 (187)
Q Consensus 31 Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~-~F~~~~~~~-----e~~~~~i~l~-~~~~~~~~~lL~~~Yt~~~~i-~~~~ 102 (187)
-++..+.+ ..|-+-+.+|.+.-. ..-.||.++ +...++..+. +++..+|+.||+|.-+|.+.- +.-.
T Consensus 97 ~~t~lvd~-----~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vS 171 (438)
T KOG3840|consen 97 KVCLLVDQ-----TRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVS 171 (438)
T ss_pred ceEEEeee-----EEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCc
Confidence 46666677 788888888876532 345566554 3344566665 699999999999999998875 4566
Q ss_pred HHHHHHHHhhcCccc
Q psy13247 103 LKQVLETAKVLMVRG 117 (187)
Q Consensus 103 ~~~ll~~A~~~~~~~ 117 (187)
+.+|-++.+++.++.
T Consensus 172 vpELrEACDYLlipF 186 (438)
T KOG3840|consen 172 VSELREACDYLLVPF 186 (438)
T ss_pred hHHHHhhcceEEeec
Confidence 788888888887764
No 32
>KOG2723|consensus
Probab=85.83 E-value=1.7 Score=33.22 Aligned_cols=87 Identities=10% Similarity=0.177 Sum_probs=56.7
Q ss_pred EEEEeCCCCCcceEEehhhHHhhcc-CHHHHHhhcCC----CCCCCeEEeCCCCHHHHHHHhcccccceeccCc--ccHH
Q psy13247 32 VTLACNWENSDIKTYKAHQMILSAC-SPYFEKLFLEN----THPHPIIFLRDIHHKELEVILHFMYRGEVNIKQ--DSLK 104 (187)
Q Consensus 32 v~i~v~~~~~~~~~~~~Hk~vL~~~-S~~F~~~~~~~----e~~~~~i~l~~~~~~~~~~lL~~~Yt~~~~i~~--~~~~ 104 (187)
+.+.||| .-|..-..-|... -....+||++. ........| +-+-..|+.+|.|+-+....++. .++.
T Consensus 11 v~lnvGG-----~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 11 VELNVGG-----AIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred eeeccCC-----eEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHH
Confidence 4455666 4444333324443 33566777642 111223333 45777899999999997777766 6688
Q ss_pred HHHHHHhhcCccchHhhcCC
Q psy13247 105 QVLETAKVLMVRGLCEENSP 124 (187)
Q Consensus 105 ~ll~~A~~~~~~~L~~~c~~ 124 (187)
.|...|++|+++.+...+.+
T Consensus 85 ~L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHHHHHHccccHHHHHhc
Confidence 89999999999988886643
No 33
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=76.01 E-value=1.6 Score=27.50 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.0
Q ss_pred cCcccHHHHHHHHhhcCccchHhhcCC
Q psy13247 98 IKQDSLKQVLETAKVLMVRGLCEENSP 124 (187)
Q Consensus 98 i~~~~~~~ll~~A~~~~~~~L~~~c~~ 124 (187)
++.+.+.+|+.+|.++++++|.+.|+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~ 37 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCK 37 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 356688999999999999999999954
No 34
>KOG1778|consensus
Probab=73.52 E-value=1.4 Score=35.76 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=65.2
Q ss_pred eEEehhhHHhhccCHHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHhcccccceeccCccc--HHHHHHHHhhcCccchH
Q psy13247 44 KTYKAHQMILSACSPYFEKLFLEN--THPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDS--LKQVLETAKVLMVRGLC 119 (187)
Q Consensus 44 ~~~~~Hk~vL~~~S~~F~~~~~~~--e~~~~~i~l~~~~~~~~~~lL~~~Yt~~~~i~~~~--~~~ll~~A~~~~~~~L~ 119 (187)
..+.+|+.+|...|+.|..+...+ ......+.+..+....+..+.+++|.. .+..... ...++.+...|.++..+
T Consensus 36 ~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~~ 114 (319)
T KOG1778|consen 36 DLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQPK 114 (319)
T ss_pred hhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCcc
Confidence 689999999999999998887665 333455677788889999999999988 4433322 44566666788899999
Q ss_pred hhcCCCCCCcchh
Q psy13247 120 EENSPNGAGEILR 132 (187)
Q Consensus 120 ~~c~~~~~~~~~~ 132 (187)
..|...+.++.+.
T Consensus 115 ~d~~~~~~~~~~~ 127 (319)
T KOG1778|consen 115 ADCDPILECGLFD 127 (319)
T ss_pred ccCCccccchhhh
Confidence 8886655554443
No 35
>KOG3713|consensus
Probab=71.91 E-value=24 Score=30.26 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=57.7
Q ss_pred eEEEEeCCCCCcceEEehhhHHhhccCHH-HHHhhcCC------------CCCCCeEEeCCCCHHHHHHHhcccccceec
Q psy13247 31 DVTLACNWENSDIKTYKAHQMILSACSPY-FEKLFLEN------------THPHPIIFLRDIHHKELEVILHFMYRGEVN 97 (187)
Q Consensus 31 Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~-F~~~~~~~------------e~~~~~i~l~~~~~~~~~~lL~~~Yt~~~~ 97 (187)
-+.+.||| .++..-+..|.....- +..+...+ ....++..+ |-+|.+|..+++|.+||++.
T Consensus 32 ~i~lNVGG-----~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF-DR~P~~F~~Vl~fYrtGkLH 105 (477)
T KOG3713|consen 32 RVRLNVGG-----TRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF-DRHPGAFAYVLNFYRTGKLH 105 (477)
T ss_pred EEEEeeCC-----eeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeee-ccChHHHHHHHHHHhcCeec
Confidence 57888899 8888877777763221 11222100 223344444 57999999999999999999
Q ss_pred cCccc-HHHHHHHHhhcCccch-HhhcC
Q psy13247 98 IKQDS-LKQVLETAKVLMVRGL-CEENS 123 (187)
Q Consensus 98 i~~~~-~~~ll~~A~~~~~~~L-~~~c~ 123 (187)
...+- .....+--+++++++. .+.|+
T Consensus 106 ~p~~vC~~~F~eEL~yWgI~~~~le~CC 133 (477)
T KOG3713|consen 106 VPADVCPLSFEEELDYWGIDEAHLESCC 133 (477)
T ss_pred cccccchHHHHHHHHHhCCChhhhhHHh
Confidence 87655 3456677788888853 34553
No 36
>KOG4390|consensus
Probab=70.97 E-value=10 Score=31.69 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=59.3
Q ss_pred eEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCC------CCCCeEEeCCCCHHHHHHHhcccccceeccCcccHH
Q psy13247 31 DVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENT------HPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLK 104 (187)
Q Consensus 31 Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e------~~~~~i~l~~~~~~~~~~lL~~~Yt~~~~i~~~~~~ 104 (187)
-+++.|.| ++|...|.-|-... +.++.++| ...++ .+-|-+++.|+.+|.|.-||++.-+.....
T Consensus 41 ~lvlNvSG-----rRFeTWknTLeryP---dTLLGSsEkeFFy~~dt~e-YFFDRDPdiFRhvLnFYRTGkLHyPR~ECi 111 (632)
T KOG4390|consen 41 LLVLNVSG-----RRFETWKNTLERYP---DTLLGSSEKEFFYDEDTGE-YFFDRDPDIFRHVLNFYRTGKLHYPRHECI 111 (632)
T ss_pred EEEEeccc-----cchhHHHhHHHhCc---hhhhCCcchheeecCCccc-ccccCChHHHHHHHHHhhcCcccCchHHHH
Confidence 35667788 99999999998654 44555442 12222 344689999999999999999988765544
Q ss_pred HHH--HHHhhcCccchHhhcC
Q psy13247 105 QVL--ETAKVLMVRGLCEENS 123 (187)
Q Consensus 105 ~ll--~~A~~~~~~~L~~~c~ 123 (187)
.-+ ++|-+=-+|+|+-.|+
T Consensus 112 ~AyDeELaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 112 SAYDEELAFYGLVPELIGDCC 132 (632)
T ss_pred HHhhhhhhHhcccHHHHhhhh
Confidence 322 3555556789999884
No 37
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=68.97 E-value=17 Score=24.14 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=41.2
Q ss_pred eEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCC-----CCCCeEEeCCCCHHHHHHHhccc
Q psy13247 31 DVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENT-----HPHPIIFLRDIHHKELEVILHFM 91 (187)
Q Consensus 31 Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e-----~~~~~i~l~~~~~~~~~~lL~~~ 91 (187)
-+.+.||.. .++|-+....|. .|.|+.++...+ ...+.|.|+ ++...|+.+|..+
T Consensus 40 ~~~VyVG~~---~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEE---RRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCcc---ceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 356777762 278888888887 489999998651 235678898 7888999988764
No 38
>PLN03090 auxin-responsive family protein; Provisional
Probab=47.84 E-value=69 Score=21.52 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=38.3
Q ss_pred EEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCC-----CCCCeEEeCCCCHHHHHHHhccc
Q psy13247 32 VTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENT-----HPHPIIFLRDIHHKELEVILHFM 91 (187)
Q Consensus 32 v~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e-----~~~~~i~l~~~~~~~~~~lL~~~ 91 (187)
+.+.||++ .++|-++-..|.. |.|..++...+ ...+.+.++ ++...|+.++..|
T Consensus 45 ~aVyVG~~---~~RfvVp~~~L~h--P~F~~LL~~aeeEfGf~~~G~L~IP-C~~~~Fe~ll~~i 103 (104)
T PLN03090 45 FPVYVGEN---RSRYIVPISFLTH--PEFQSLLQQAEEEFGFDHDMGLTIP-CEEVVFRSLTSMI 103 (104)
T ss_pred EEEEECCC---CEEEEEEHHHcCC--HHHHHHHHHHHHHhCCCCCCcEEEe-CCHHHHHHHHHHh
Confidence 45666652 2688888887774 89999987651 234568888 6888899888654
No 39
>PLN03219 uncharacterized protein; Provisional
Probab=46.05 E-value=77 Score=21.43 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=38.8
Q ss_pred EEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCC------CCCCCeEEeCCCCHHHHHHHhcc
Q psy13247 32 VTLACNWENSDIKTYKAHQMILSACSPYFEKLFLEN------THPHPIIFLRDIHHKELEVILHF 90 (187)
Q Consensus 32 v~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~------e~~~~~i~l~~~~~~~~~~lL~~ 90 (187)
+.+.|++ +++.++|-+.-..|.. |.|+.++... ....+.|.|+ ++.+.|+.+|..
T Consensus 44 ~aVYVG~-~~E~kRFvVPi~yL~h--P~F~~LL~~AeEEfGf~~~~G~L~IP-Cd~~~F~~ll~~ 104 (108)
T PLN03219 44 VAVYVGE-QMEKKRFVVPISYLNH--PLFREFLNRAEEECGFHHSMGGLTIP-CREESFLHLITS 104 (108)
T ss_pred EEEEECC-CCCceEEEEEHHHcCC--hHHHHHHHHHHHHhCCCCCCCCEEEe-CCHHHHHHHHHh
Confidence 4556654 2234788888888874 8999998754 2234678998 788889888764
No 40
>KOG4682|consensus
Probab=44.56 E-value=4.7 Score=33.67 Aligned_cols=30 Identities=7% Similarity=-0.116 Sum_probs=26.8
Q ss_pred ccCcccHHHHHHHHhhcCccchHhhcCCCC
Q psy13247 97 NIKQDSLKQVLETAKVLMVRGLCEENSPNG 126 (187)
Q Consensus 97 ~i~~~~~~~ll~~A~~~~~~~L~~~c~~~~ 126 (187)
.+++.++...+++|++||++.+++.|.+++
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl 198 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWL 198 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHH
Confidence 468899999999999999999999997653
No 41
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=44.33 E-value=18 Score=19.26 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=14.2
Q ss_pred ccccceec----cCcccHHHHHHHHh
Q psy13247 90 FMYRGEVN----IKQDSLKQVLETAK 111 (187)
Q Consensus 90 ~~Yt~~~~----i~~~~~~~ll~~A~ 111 (187)
-+|.|++. ++.+.+.+|+.+|.
T Consensus 10 IfY~G~V~Vfd~v~~~Ka~~im~lA~ 35 (36)
T PF06200_consen 10 IFYGGQVCVFDDVPPDKAQEIMLLAS 35 (36)
T ss_pred EEECCEEEEeCCCCHHHHHHHHHHhc
Confidence 36777763 46667777776664
No 42
>KOG4350|consensus
Probab=35.12 E-value=15 Score=30.90 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=44.8
Q ss_pred CHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHhccccccee-------------ccCcccHHHHHHHHhhcCccchHhhcC
Q psy13247 57 SPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEV-------------NIKQDSLKQVLETAKVLMVRGLCEENS 123 (187)
Q Consensus 57 S~~F~~~~~~~e~~~~~i~l~~~~~~~~~~lL~~~Yt~~~-------------~i~~~~~~~ll~~A~~~~~~~L~~~c~ 123 (187)
+.-|++++.. -..+.+.+.+++.+.+-.+|........ -+..+|+..++.+|..|++++|...|.
T Consensus 93 ~eAF~~lLrY--iYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~ 170 (620)
T KOG4350|consen 93 SEAFRALLRY--IYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCM 170 (620)
T ss_pred HHHHHHHHHH--HhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHH
Confidence 4556655543 2334678888887765555544322111 246688888999999999999999996
Q ss_pred CC
Q psy13247 124 PN 125 (187)
Q Consensus 124 ~~ 125 (187)
-+
T Consensus 171 mf 172 (620)
T KOG4350|consen 171 MF 172 (620)
T ss_pred HH
Confidence 54
No 43
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=32.59 E-value=29 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=18.7
Q ss_pred eccCcccHHHHHHHHhhcCccchHh
Q psy13247 96 VNIKQDSLKQVLETAKVLMVRGLCE 120 (187)
Q Consensus 96 ~~i~~~~~~~ll~~A~~~~~~~L~~ 120 (187)
..++++.+.+|..+|..|++++|.-
T Consensus 4 F~L~~edl~ql~kas~~l~l~dl~~ 28 (112)
T PF09116_consen 4 FELKAEDLQQLMKASRTLGLPDLCF 28 (112)
T ss_dssp EEE-HHHHHHHHHHHHHCT--EEEE
T ss_pred EEecHHHHHHHHHHHHhcCCCeEEE
Confidence 3578899999999999999998754
No 44
>PLN03220 uncharacterized protein; Provisional
Probab=32.37 E-value=1.6e+02 Score=19.83 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=36.8
Q ss_pred EEEEeCCC-CCcceEEehhhHHhhccCHHHHHhhcCC------CCCCCeEEeCCCCHHHHHHHh
Q psy13247 32 VTLACNWE-NSDIKTYKAHQMILSACSPYFEKLFLEN------THPHPIIFLRDIHHKELEVIL 88 (187)
Q Consensus 32 v~i~v~~~-~~~~~~~~~Hk~vL~~~S~~F~~~~~~~------e~~~~~i~l~~~~~~~~~~lL 88 (187)
+.+.||+. +.+.++|-+.-..|.. |.|+.++... ....+.++|+ ++.+.|..++
T Consensus 40 ~aVyVGe~~~~e~kRFVVPv~yL~h--P~F~~LL~~AeEEfGf~~~~G~L~IP-Cd~~~F~~ll 100 (105)
T PLN03220 40 VAVYVGEQIEMEKKRFVVPISFLNH--PSFKEFLSRAEEEFGFNHPMGGLTIP-CREEVFLDLI 100 (105)
T ss_pred EEEEECCCCCccceEEEEEHHHcCC--hHHHHHHHHHHHHhCCCCCCCCEEee-CCHHHHHHHH
Confidence 56667642 1234788888888774 8999998754 2224678888 6778887776
No 45
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=24.44 E-value=1.1e+02 Score=22.24 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHhCCCceeEEEEeCC
Q psy13247 14 SNLTDVLSKFLQDESLVDVTLACNW 38 (187)
Q Consensus 14 ~~l~~~l~~~~~~~~~~Dv~i~v~~ 38 (187)
..+.+.+..+...| +|++|.+||
T Consensus 83 e~fA~~l~~~~~~G--~~i~f~IGG 105 (155)
T COG1576 83 EEFADFLERLRDDG--RDISFLIGG 105 (155)
T ss_pred HHHHHHHHHHHhcC--CeEEEEEeC
Confidence 46777788888888 899999998
Done!