RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13247
         (187 letters)



>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain.  The BTB (for BR-C, ttk and bab) or
           POZ (for Pox virus and Zinc finger) domain is present
           near the N-terminus of a fraction of zinc finger
           (pfam00096) proteins and in proteins that contain the
           pfam01344 motif such as Kelch and a family of pox virus
           proteins. The BTB/POZ domain mediates homomeric
           dimerisation and in some instances heteromeric
           dimerisation. The structure of the dimerised PLZF
           BTB/POZ domain has been solved and consists of a tightly
           intertwined homodimer. The central scaffolding of the
           protein is made up of a cluster of alpha-helices flanked
           by short beta-sheets at both the top and bottom of the
           molecule. POZ domains from several zinc finger proteins
           have been shown to mediate transcriptional repression
           and to interact with components of histone deacetylase
           co-repressor complexes including N-CoR and SMRT. The POZ
           or BTB domain is also known as BR-C/Ttk or ZiN.
          Length = 101

 Score = 85.7 bits (213), Expect = 3e-22
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 10/105 (9%)

Query: 20  LSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDI 79
           L++  ++  L DVTL         K + AH+ +L+ACSPYF+ LF  N      I L D+
Sbjct: 1   LNELRENGELCDVTLVV-----GDKEFHAHKAVLAACSPYFKALFTGN--KEVEITLEDV 53

Query: 80  HHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGL---CEE 121
             ++ E +L F+Y G++ I ++++  +L  A  L +  L   CEE
Sbjct: 54  SPEDFEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEE 98


>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac.  Domain
           in Broad-Complex, Tramtrack and Bric a brac. Also known
           as POZ (poxvirus and zinc finger) domain. Known to be a
           protein-protein interaction motif found at the N-termini
           of several C2H2-type transcription factors as well as
           Shaw-type potassium channels. Known structure reveals a
           tightly intertwined dimer formed via interactions
           between N-terminal strand and helix structures. However
           in a subset of BTB/POZ domains, these two secondary
           structures appear to be missing. Be aware SMART predicts
           BTB/POZ domains without the beta1- and alpha1-secondary
           structures.
          Length = 97

 Score = 78.5 bits (194), Expect = 2e-19
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)

Query: 31  DVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENT--HPHPIIFLRDIHHKELEVIL 88
           DVTL         K + AH+ +L+A SPYF+ LF  +        I+L D+  ++   +L
Sbjct: 1   DVTLVVGG-----KKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALL 55

Query: 89  HFMYRGEVNIKQDSLKQVLETAKVLMVRGL---CEEN 122
           +F+Y G++++ +++++++LE A  L + GL   CEE 
Sbjct: 56  NFLYTGKLDLPEENVEELLELADYLQIPGLVELCEEF 92


>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
          Length = 534

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 44  KTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSL 103
              K H++ILS+ S YF+K+F  N   + I    D        ++ ++Y G++NI  +++
Sbjct: 21  GIIKVHKIILSSSSEYFKKMFKNNFKENEINLNIDYD--SFNEVIKYIYTGKINITSNNV 78

Query: 104 KQVLETAKVLMV 115
           K +L  A  L++
Sbjct: 79  KDILSIANYLII 90


>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
           Provisional.
          Length = 657

 Score = 33.1 bits (75), Expect = 0.067
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 131 LRERASSPSVTKDDVNTRKRKMETGAQYCDRENYVNSPKLHTSSSMSSS 179
           LR+   +P+V KDD+     K++     C R  Y  +   ++ SS +S 
Sbjct: 591 LRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQAAAANSGSSSNSG 639


>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
          Length = 557

 Score = 30.7 bits (69), Expect = 0.45
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 12 HTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLF 64
          H   +   +S  L D+ L DV +       D +  KAH+ IL+A S YF  LF
Sbjct: 8  HNRRVVSNISNLLDDDILCDVIITIG----DGEEIKAHKTILAAGSKYFRTLF 56


>gnl|CDD|176550 cd08608, GDPD_GDE2, Glycerophosphodiester phosphodiesterase domain
           of mammalian glycerophosphodiester phosphodiesterase
           GDE2 and similar proteins.  This subfamily corresponds
           to the glycerophosphodiester phosphodiesterase domain
           (GDPD) present in mammalian GDE2 (also known as
           glycerophosphodiester phosphodiesterase
           domain-containing protein 5 (GDPD5)) and their metazoan
           homologs. Mammalian GDE2 is transmembrane protein
           primarily expressed in mature neurons. It is a mammalian
           homolog of bacterial glycerophosphodiester
           phosphodiesterases (GP-GDEs, EC 3.1.4.46), which
           catalyze the hydrolysis of various
           glycerophosphodiesters, and produce
           sn-glycerol-3-phosphate (G3P) and the corresponding
           alcohols. Mammalian GDE2 selectively hydrolyzes
           glycerophosphocholine (GPC) and has been characterized
           as GPC-GDE (EC 3.1.4.2) that contributes to osmotic
           regulation of cellular GPC. Mammalian GDE2 functions in
           a complex with an antioxidant scavenger peroxiredoxin1
           (Prdx1) to control motor neuron differentiation in the
           spinal cord. Mammalian GDE2 also plays a critical role
           for retinoid-induced neuronal outgrowth. The catalytic
           activity of GDPD domain is essential for mammalian GDE2
           cellular function.
          Length = 351

 Score = 29.8 bits (67), Expect = 0.76
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 9/53 (16%)

Query: 3   DEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSA 55
           DE+CL W       +D++S  +    +V + +   W    I++Y   Q++LSA
Sbjct: 269 DEYCLIWIT-----SDLISFAV----IVGIFIFQKWRLGGIRSYNPEQIMLSA 312


>gnl|CDD|216606 pfam01616, Orbi_NS3, Orbivirus NS3.  The function of this Orbivirus
           non structural protein is uncertain. However it may play
           a role on release of the virus from infected cells.
          Length = 194

 Score = 29.3 bits (66), Expect = 0.94
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 122 NSPNGAGEILR-ERASSPSVT---KDDVNTRKRKMETGAQ 157
           +S  GA E  + E+A+  +     +DD  TR+ K++   Q
Sbjct: 34  SSTTGATEAQKREKAAFGAAAEALRDDEPTRQIKVQVNEQ 73


>gnl|CDD|214008 cd12809, Esterase_713_like-2, Uncharacterized enzymes similar to
          novel bacterial esterase that cleaves esters on
          halogenated cyclic compounds.  This family contains
          uncharacterized proteins similar to a novel bacterial
          esterase (Alcaligenes esterase 713) with the alpha/beta
          hydrolase fold but does not contain the GXSXXG
          pentapeptide around the active site serine residue as
          commonly seen in other enzymes of this class. Esterase
          713 shows negligible sequence homology to other
          esterase and lipase enzymes. It is active as a dimer
          and cleaves esters on halogenated cyclic compounds
          though its natural substrate is unknown.
          Length = 280

 Score = 28.3 bits (64), Expect = 2.1
 Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 11/44 (25%)

Query: 38 WENSDIKTYKAHQMILSACSPYFEKLF-LENTHPHPIIFLRDIH 80
          +      T    QM       Y EKL     T P+PI+    IH
Sbjct: 13 YVKQGGGTVTVGQM-------YVEKLTPARVTRPYPIVL---IH 46


>gnl|CDD|129345 TIGR00242, TIGR00242, mraZ protein.  Members of this family contain
           two tandem copies of a domain described by pfam02381.
           This protein often is found with other genes of the dcw
           (division cell wall) gene cluster, including mraW, ftsI,
           murE, murF, ftsW, murG, etc [Unknown function, General].
          Length = 142

 Score = 27.1 bits (60), Expect = 3.5
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 91  MYRGEVNIKQDSLKQVLETAK--------VLMVRGL--CEENSPNGAGEILRERASSPSV 140
           M+RG  N+  D+  ++   AK        V+  RG   C    P    E + ++ ++   
Sbjct: 1   MFRGATNVTLDAKGRISVPAKYRAFLLESVVTNRGFENCLLLYPLQEWEKIEQKLNALPS 60

Query: 141 TKDDVNTRKRKMETGAQYCD 160
           T+ D    +R +   A  C+
Sbjct: 61  TQKDTRRLQRLIFGHATECE 80


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0732    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,017,094
Number of extensions: 800357
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 14
Length of query: 187
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 96
Effective length of database: 6,901,388
Effective search space: 662533248
Effective search space used: 662533248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)