RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13247
(187 letters)
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 79.2 bits (196), Expect = 8e-20
Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 11 NHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHP 70
+H +L + L+K + L D T+ +KAH+ +L++ S YF ++ +
Sbjct: 4 HHCEHLLERLNKQREAGFLCDCTIVI-----GEFQFKAHRNVLASFSEYFGAIYRSTSEN 58
Query: 71 HPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL---MVRGLCEE 121
+ + + + +L F+Y G +N+ ++K++ + A L V C+
Sbjct: 59 NVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKI 112
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 77.6 bits (192), Expect = 5e-19
Identities = 24/123 (19%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 6 CLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLF- 64
+ + +H+S++ L++ L DV + + + + H+ +L+ACS YF+KLF
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILV-----EGREFPTHRSVLAACSQYFKKLFT 56
Query: 65 ---LENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL---MVRGL 118
+ + + + + + L ++ F Y + + ++ +L A++L V +
Sbjct: 57 SGAVVDQ--QNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHV 114
Query: 119 CEE 121
C +
Sbjct: 115 CAD 117
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 77.3 bits (191), Expect = 5e-19
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 11 NHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHP 70
H+ ++ + L++ Q L D T + +KAH+ +L+ACS YF+ LF++
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDG-----VHFKAHKAVLAACSEYFKMLFVDQKD- 62
Query: 71 HPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLM---VRGLCEE 121
++ L + L +L FMY ++++ +++ VL A L + C
Sbjct: 63 --VVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHA 114
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 77.3 bits (191), Expect = 7e-19
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 4 EFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKL 63
+ +++ H S++ L++ + L DV + + ++AH+ +L ACS F +
Sbjct: 4 DSQIQFTRHASDVLLNLNRLRSRDILTDVVIVV-----SREQFRAHKTVLMACSGLFYSI 58
Query: 64 F---LENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLM---VRG 117
F L+ I +I+ + ++L FMY +N+++ ++ V+ TA L V
Sbjct: 59 FTDQLKRNLSV-INLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 117
Query: 118 LCEE 121
C +
Sbjct: 118 TCRK 121
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 76.5 bits (189), Expect = 1e-18
Identities = 24/123 (19%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 3 DEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEK 62
F + H++N+ L+ + + L DVT+ + + ++AH+ +L+ACS YF
Sbjct: 3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFV-----EGQRFRAHRSVLAACSSYFHS 57
Query: 63 LFLENT-HPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL---MVRGL 118
+ I ++ K E ++ F Y ++ + ++++ +V + + L +
Sbjct: 58 RIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117
Query: 119 CEE 121
C +
Sbjct: 118 CFQ 120
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 76.6 bits (189), Expect = 2e-18
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 5 FCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLF 64
+ H + L LS F ++ D L D + + IL+A SPY
Sbjct: 23 MAVSDPQHAARLLRALSSFREESRFCDAHLVL-----DGEEIPVQKNILAAASPYIRTKL 77
Query: 65 LENTHP----HPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL---MVRG 117
N I L I + IL +++ G++ + +D+++ V++ A +L ++
Sbjct: 78 NYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 137
Query: 118 LCEE 121
LC E
Sbjct: 138 LCCE 141
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 76.2 bits (188), Expect = 2e-18
Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 1 MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYF 60
F + H++N+ L+ + + L DVT+ + + ++AH+ +L+ACS YF
Sbjct: 8 ESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLV-----EGQRFRAHRSVLAACSSYF 62
Query: 61 EKLFLENTHPHP-IIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLM---VR 116
+ T + ++ K E ++ F Y ++ + +D++ +V + L +
Sbjct: 63 HSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIE 122
Query: 117 GLCEE 121
C +
Sbjct: 123 ESCFQ 127
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 75.7 bits (187), Expect = 2e-18
Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 4 EFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKL 63
+ + H +N+ L+ + + L DVTL + K ++AH+ +L+ACS YF +
Sbjct: 7 MYVYESTVHCTNILLGLNDQRKKDILCDVTLIV-----ERKEFRAHRAVLAACSEYFWQA 61
Query: 64 FLENTHPHP-IIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLM---VRGLC 119
+ T + ++ + +L F Y ++ + ++++++V+ A+ L + C
Sbjct: 62 LVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSC 121
Query: 120 EE 121
Sbjct: 122 FS 123
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 75.4 bits (186), Expect = 4e-18
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 10 KNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTH 69
H+ + L+K + D TL +KAH +L+ CS +F++++ + T
Sbjct: 6 SGHSVRVLQELNKQREKGQYCDATLDV-----GGLVFKAHWSVLACCSHFFQRIYGDGTG 60
Query: 70 PHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL---MVRGLCEE 121
+ L + ++L F Y G + + + QVL AK L LC+
Sbjct: 61 GS--VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQS 113
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 74.6 bits (184), Expect = 5e-18
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 9 WKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENT 68
+ H+ + L+K + D TL +KAH +L+ CS +F+ L+ + +
Sbjct: 4 FVQHSVRVLQELNKQREKGQYCDATLDV-----GGLVFKAHWSVLACCSHFFQSLYGDGS 58
Query: 69 HPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL---MVRGLCEE 121
+ L + ++L F Y G + + + QVL A+ L LC+
Sbjct: 59 GGS--VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQS 112
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 75.0 bits (185), Expect = 6e-18
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 9/122 (7%)
Query: 3 DEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEK 62
++ N +++ + L++ DV++ +KAH+ +L+A S YF
Sbjct: 7 QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKG-----HAFKAHRAVLAASSSYFRD 61
Query: 63 LFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLM---VRGLC 119
LF + + + + + IL F Y G +++ ++ TA L +
Sbjct: 62 LFNNSRSAV-VELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKG 120
Query: 120 EE 121
E
Sbjct: 121 TE 122
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 73.0 bits (180), Expect = 3e-17
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 10 KNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTH 69
+H + L ++ +L DV + D + + AH+ +L+ S FE LF
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMV-----DSQEFHAHRTVLACTSKMFEILF---HR 60
Query: 70 PHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL---MVRGLCEE 121
L + K + IL + Y + K + L +L A++L + C +
Sbjct: 61 NSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLK 115
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 75.7 bits (187), Expect = 4e-17
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Query: 1 MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYF 60
M + + H + L LS F ++ D L D + + IL+A SPY
Sbjct: 3 MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVL-----DGEEIPVQKNILAAASPYI 57
Query: 61 EKLFLENTH----PHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL--- 113
N I L I + IL +++ G++ + +D+++ V++ A +L
Sbjct: 58 RTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLT 117
Query: 114 MVRGLCEE 121
++ LC E
Sbjct: 118 DLKTLCCE 125
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 71.1 bits (175), Expect = 9e-17
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 24 LQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLF----LENTHPHPIIFLRDI 79
+E + DV + +T AH+ +L+ S F +F E I + D+
Sbjct: 3 FNNELMADVHFVVGPPGAT-RTVPAHKYVLAVGSSVFYAMFYGDLAEVKSE---IHIPDV 58
Query: 80 HHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLM---VRGLCEE 121
++L +MY E++++ D++ L AK + + C
Sbjct: 59 EPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVN 103
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 70.8 bits (174), Expect = 2e-16
Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 1 MDDEFCLKWKN--HTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSP 58
M+ + + ++ +L + L++ DVT+ + ++AH+ ILSA S
Sbjct: 1 MESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVED-----RKFRAHKNILSASST 55
Query: 59 YFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGE-VNIKQDSLKQVLETAKVLMVRG 117
YF +LF + ++ L I + IL+++Y + V ++ D L +++++ ++L V+
Sbjct: 56 YFHQLF---SVAGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKF 112
Query: 118 LCE 120
+
Sbjct: 113 IAA 115
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 70.3 bits (173), Expect = 5e-16
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 14 SNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFL----ENTH 69
L D L ++ D L + ++AH+ IL+A SP F +F E+
Sbjct: 10 CRLADELGGLWENSRFTDCCLCVAGQ-----EFQAHKAILAARSPVFSAMFEHEMEESKK 64
Query: 70 PHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETA---KVLMVRGLCEE 121
+ + D+ + + ++ F+Y G+ +L A + ++ +CE+
Sbjct: 65 NR--VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCED 117
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 70.7 bits (174), Expect = 6e-16
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 14 SNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFL----ENTH 69
L D L ++ D L + ++AH+ IL+A SP F +F E+
Sbjct: 19 CRLADELGGLWENSRFTDCCLCVAGQ-----EFQAHKAILAARSPVFSAMFEHEMEESKK 73
Query: 70 PHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETA---KVLMVRGLCEE 121
+ + D+ + + ++ F+Y G+ +L A + ++ +CE+
Sbjct: 74 NR--VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCED 126
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 71.9 bits (177), Expect = 1e-15
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 3 DEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEK 62
+ + +H S L+ ++ + D+TL + + ++AH+ +L+A + YF
Sbjct: 6 EAEDFECSSHCSELSWRQNEQRRQGLFCDITLCF--GGAGGREFRAHRSVLAAATEYFTP 63
Query: 63 LF----LENTHP----HPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLM 114
L E+ +E ++ +MY G + + S+ +VLE A +
Sbjct: 64 LLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFL 123
Query: 115 ---VRGLCEE 121
++ C E
Sbjct: 124 LIRLKEFCGE 133
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 66.9 bits (164), Expect = 6e-15
Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 25/129 (19%)
Query: 12 HTSNLTDVLSKFLQ--DESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTH 69
+ +D L + +L D + + + AH ++L+ S +
Sbjct: 11 PSPYGSDRLVQLAARLRPALCDTLITV-----GSQEFPAHSLVLAGVSQQLGRRGQWAL- 64
Query: 70 PHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL---MVRGLCEENSPNG 126
I +L+F+Y V ++ L+ + E A+ L + C
Sbjct: 65 ------GEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACW------ 112
Query: 127 AGEILRERA 135
+RA
Sbjct: 113 --RARGDRA 119
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 64.9 bits (158), Expect = 5e-13
Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 10 KNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFL---- 65
K L D L ++ D L + ++AH+ IL+A SP F +F
Sbjct: 155 KVPECRLADELGGLWENSRFTDCCLCVAGQ-----EFQAHKAILAARSPVFSAMFEHEME 209
Query: 66 ENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETA---KVLMVRGLCEE 121
E+ + + D+ + + ++ F+Y G+ +L A + ++ +CE+
Sbjct: 210 ESKKNR--VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCED 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 42/151 (27%)
Query: 3 DEFCLKWKNHTSNLTDVLSKFLQDE---SLVDVT------LACNWENSDIKTYKAHQMIL 53
++F L + F D+ + ++ ++ E S + + +L
Sbjct: 35 EQF-------NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ---VL 84
Query: 54 SACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLET---A 110
+ C FE +LE DIH + + E + K++++ A
Sbjct: 85 NLCLTEFENCYLEGN---------DIH----ALAAKLL--QENDTTLVKTKELIKNYITA 129
Query: 111 KVLMVRGLCEENSPNGAGEILRERASSPSVT 141
+++ R + N A L +
Sbjct: 130 RIMAKRPF--DKKSNSA---LFRAVGEGNAQ 155
Score = 34.6 bits (79), Expect = 0.014
Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 36/155 (23%)
Query: 46 YKAHQMI-LSACSPYFEKLFLENTH--PHPIIFLRDIHHKELEVILHFMYRGEVNIKQDS 102
+ ++ ++ P + LEN P P++ + ++ ++++ + + N +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV-----NKTNSHLPA 362
Query: 103 LKQVLETAKVLMVRGLCEENSPN------------GAGEILRERASSPSVTKDDVNTRKR 150
KQV E + V N G LR+ + + + + +R
Sbjct: 363 GKQV-EISLV---------NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 151 KMETGAQYCDRENYVNSPKLHTSSSMSSSLSEVPA 185
K++ ++ V SP H S + + +
Sbjct: 413 KLKFSNRFLP----VASP-FH-SHLLVPASDLINK 441
Score = 34.6 bits (79), Expect = 0.017
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 46/129 (35%)
Query: 12 HTSNLTDVLSKFLQDESLVDVTLACNWENSDIK-----TYKAH--------------QMI 52
H+ L +D +V+ + DI+ T+ I
Sbjct: 428 HSHLLVPASDLINKDLVKNNVS----FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 53 LSACSP-YFEKLFLENTHPHPIIF-------LRDIHHKELE-----VILHFMYRGEVNIK 99
+ P +E + H + F L + H+ + VI+ G ++I
Sbjct: 484 I--RLPVKWETT-TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV----AGTLDIN 536
Query: 100 QDS---LKQ 105
D KQ
Sbjct: 537 PDDDYGFKQ 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.049
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 32/99 (32%)
Query: 22 KFLQDESLVDVTLACNWENS------DIKTYKAHQMILSACSPYFEKLFLENTHPHPIIF 75
+FL+ + + + A N S +K YK + I P +E+L
Sbjct: 501 RFLE-QKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDND-PKYERL------------ 544
Query: 76 LRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLM 114
+ IL F+ + E N+ +L A LM
Sbjct: 545 --------VNAILDFLPKIEENLICSKYTDLLRIA--LM 573
Score = 31.7 bits (71), Expect = 0.12
Identities = 32/204 (15%), Positives = 57/204 (27%), Gaps = 48/204 (23%)
Query: 1 MDDE-FCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPY 59
MD + F L KN S + + + LQ + NW + + I S
Sbjct: 180 MDFKIFWLNLKNCNS--PETVLEMLQKLLY---QIDPNWTSRSDHSSNIKLRIHSI-QAE 233
Query: 60 FEKLFLENTHPHPIIFLRDIHHKEL-----------------EVILHFMYRGEVNIKQDS 102
+L + + ++ L ++ + + +V +I D
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 103 LKQVLETAKVLMVRGLCEENSPNGAGEILRERAS--SPSV-------TKDDVNTRKRKME 153
L +V + + P L +P +D + T
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTNPRRLSIIAESIRDGLATW----- 344
Query: 154 TGAQYCDRENYVNSPKLHTSSSMS 177
D +VN KL T S
Sbjct: 345 ------DNWKHVNCDKLTTIIESS 362
Score = 31.7 bits (71), Expect = 0.13
Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 36/139 (25%)
Query: 69 HPHPIIF-LRDIHHKELEVILHFM--YRGEVNIK--QDSLKQVLETAKV----------- 112
H H + F + ++ +++ F + + K QD K +L ++
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 113 ---LMVRGLCEENSPNGA----GEIL-----------RERASSPSVTKDDVNTRKRKMET 154
+ L + E+L + PS+ ++ ++
Sbjct: 63 GTLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 155 GAQYCDRENYVNSPKLHTS 173
Q + N V+ + +
Sbjct: 122 DNQVFAKYN-VSRLQPYLK 139
Score = 28.3 bits (62), Expect = 1.7
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 27/101 (26%)
Query: 5 FCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENS---------DIKT-----YKAHQ 50
L W + + V+ L SLV+ + S ++K Y H+
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 51 MILSACSPYFEKLFLENTHPHPI-----IFLRDIHH-KELE 85
I+ Y ++ P + HH K +E
Sbjct: 448 SIVDH---YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 29.4 bits (66), Expect = 0.65
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 53 LSACSPYFEKLFLENTHPHPIIF--LRDIHH--KELEVILHFMYRGEVNIKQDSLKQVLE 108
LS +PY K F E II L I K LE G++ +K+DS +
Sbjct: 56 LSRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISG 115
Query: 109 TAKVL 113
+ K
Sbjct: 116 SIKAR 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.379
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,710,159
Number of extensions: 147142
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 28
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)