RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13247
         (187 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 71.7 bits (175), Expect = 3e-17
 Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 7   LKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLE 66
           +++  H S++   L++    + L DV +         + ++AH+ +L ACS  F  +F +
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVV-----SREQFRAHKTVLMACSGLFYSIFTD 57

Query: 67  NT--HPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCE 120
               +   I    +I+ +   ++L FMY   +N+++ ++  V+ TA  L +  + +
Sbjct: 58  QLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 113


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 70.1 bits (171), Expect = 1e-16
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 7   LKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLE 66
           L+  +H + L    ++     +L DV +       D + + AH+ +L+  S  FE     
Sbjct: 6   LQNPSHPTGLLCKANQMRLAGTLCDVVIMV-----DSQEFHAHRTVLACTSKMFEI---L 57

Query: 67  NTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCE 120
                    L  +  K  + IL + Y   +  K + L  +L  A++L +  L E
Sbjct: 58  FHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE 111


>d2f6sa1 a.265.1.1 (A:1-177) Cell filamentation protein Fic
          {Helicobacter pylori [TaxId: 210]}
          Length = 177

 Score = 25.4 bits (55), Expect = 3.6
 Identities = 6/35 (17%), Positives = 13/35 (37%)

Query: 59 YFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYR 93
            +   ++      I  L++IH    E +  F  +
Sbjct: 14 LIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGK 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 660,006
Number of extensions: 28181
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 6
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)