Query psy1325
Match_columns 83
No_of_seqs 115 out of 1026
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 23:56:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01383 MYSc_type_VIII Myosin 100.0 2.6E-30 5.6E-35 195.1 7.3 76 3-78 379-454 (677)
2 PTZ00014 myosin-A; Provisional 100.0 2.5E-30 5.5E-35 198.0 7.0 76 3-78 476-551 (821)
3 cd01387 MYSc_type_XV Myosin mo 100.0 3.4E-30 7.5E-35 194.5 7.4 76 3-78 375-450 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 6E-30 1.3E-34 193.1 7.7 76 3-78 376-451 (671)
5 cd01384 MYSc_type_XI Myosin mo 100.0 5.6E-30 1.2E-34 193.3 7.2 76 3-78 381-456 (674)
6 cd01382 MYSc_type_VI Myosin mo 100.0 5.6E-30 1.2E-34 194.3 6.9 76 3-78 411-486 (717)
7 cd01385 MYSc_type_IX Myosin mo 100.0 6.9E-30 1.5E-34 193.2 7.1 74 5-78 393-466 (692)
8 COG5022 Myosin heavy chain [Cy 100.0 5.1E-30 1.1E-34 201.1 6.1 77 3-79 442-519 (1463)
9 cd01379 MYSc_type_III Myosin m 100.0 7.8E-30 1.7E-34 192.0 6.9 76 3-78 387-462 (653)
10 cd01378 MYSc_type_I Myosin mot 100.0 1.7E-29 3.7E-34 190.7 7.2 76 3-78 380-457 (674)
11 cd01377 MYSc_type_II Myosin mo 100.0 4.5E-29 9.7E-34 188.8 7.5 76 3-78 388-464 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 7.5E-29 1.6E-33 187.6 7.0 75 3-78 382-456 (691)
13 smart00242 MYSc Myosin. Large 100.0 1.1E-28 2.4E-33 186.4 7.2 76 3-78 383-458 (677)
14 cd00124 MYSc Myosin motor doma 99.9 3.8E-28 8.2E-33 183.5 6.6 76 3-78 376-451 (679)
15 cd01386 MYSc_type_XVIII Myosin 99.9 1.1E-27 2.4E-32 182.8 6.9 76 3-78 393-483 (767)
16 PF00063 Myosin_head: Myosin h 99.9 4.4E-27 9.5E-32 177.5 6.8 76 3-78 378-454 (689)
17 KOG0164|consensus 99.9 2.6E-26 5.7E-31 172.4 4.4 74 3-76 389-462 (1001)
18 KOG0161|consensus 99.9 6.4E-26 1.4E-30 182.8 4.7 77 3-80 462-539 (1930)
19 KOG0163|consensus 99.9 7.1E-25 1.5E-29 165.7 6.1 77 3-79 465-541 (1259)
20 KOG0160|consensus 99.9 3.9E-23 8.4E-28 158.3 5.7 76 3-79 382-457 (862)
21 KOG0162|consensus 99.8 6.6E-22 1.4E-26 149.3 3.7 75 3-77 397-472 (1106)
22 KOG4229|consensus 99.8 1.9E-21 4.2E-26 151.6 4.0 78 3-80 441-518 (1062)
23 COG2153 ElaA Predicted acyltra 35.7 14 0.0003 24.0 0.3 29 14-42 117-145 (155)
24 PF15216 TSLP: Thymic stromal 27.4 1.6E+02 0.0035 18.4 4.7 55 17-71 9-69 (124)
25 smart00394 RIIa RIIalpha, Regu 24.9 64 0.0014 15.4 1.6 16 5-21 20-35 (38)
26 PRK00085 recO DNA repair prote 23.1 33 0.00071 22.9 0.4 42 35-77 4-45 (247)
No 1
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.96 E-value=2.6e-30 Score=195.14 Aligned_cols=76 Identities=54% Similarity=0.957 Sum_probs=74.1
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|+++
T Consensus 379 ~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~t 454 (677)
T cd01383 379 DKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNAT 454 (677)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999876
No 2
>PTZ00014 myosin-A; Provisional
Probab=99.96 E-value=2.5e-30 Score=198.05 Aligned_cols=76 Identities=36% Similarity=0.504 Sum_probs=74.0
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||++|||||++|+++
T Consensus 476 ~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~t 551 (821)
T PTZ00014 476 KNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGT 551 (821)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.96 E-value=3.4e-30 Score=194.49 Aligned_cols=76 Identities=54% Similarity=0.834 Sum_probs=74.0
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|+++
T Consensus 375 ~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~t 450 (677)
T cd01387 375 SFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQAT 450 (677)
T ss_pred CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.96 E-value=6e-30 Score=193.05 Aligned_cols=76 Identities=49% Similarity=0.838 Sum_probs=74.0
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|+++
T Consensus 376 ~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~t 451 (671)
T cd01381 376 DVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGT 451 (671)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999875
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.96 E-value=5.6e-30 Score=193.26 Aligned_cols=76 Identities=51% Similarity=0.819 Sum_probs=74.0
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|..|||+|..++|.||++|+|||+++|.|||++|||||++|+++
T Consensus 381 ~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~t 456 (674)
T cd01384 381 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKST 456 (674)
T ss_pred CcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999875
No 6
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.96 E-value=5.6e-30 Score=194.26 Aligned_cols=76 Identities=41% Similarity=0.750 Sum_probs=73.9
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|.+++|.||++|+|||++||.|||++|||||++|+++
T Consensus 411 ~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~t 486 (717)
T cd01382 411 EHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPS 486 (717)
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999865
No 7
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.96 E-value=6.9e-30 Score=193.22 Aligned_cols=74 Identities=61% Similarity=1.077 Sum_probs=72.8
Q ss_pred CchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 5 FSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 5 N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
|||||||||||||+||++|++++|..++++|..|||+|..++|.||++|++||++||.|||++|||||++|+++
T Consensus 393 NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~t 466 (692)
T cd01385 393 NSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHAT 466 (692)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 8
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.96 E-value=5.1e-30 Score=201.09 Aligned_cols=77 Identities=52% Similarity=0.911 Sum_probs=73.6
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhhhcCCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANHSSNFL 79 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~GllslLDee~~~p~~~~ 79 (83)
+.||||||||||+||+||+.|++|+|+.||++|.+|||.|.+|+|.||++|+|||++ .|.|||++|||||..|.++-
T Consensus 442 EkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd 519 (1463)
T COG5022 442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATD 519 (1463)
T ss_pred ccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCc
Confidence 579999999999999999999999999999999999999999999999999999997 47799999999999998764
No 9
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.96 E-value=7.8e-30 Score=191.98 Aligned_cols=76 Identities=50% Similarity=0.837 Sum_probs=73.9
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||++|||||++|+++
T Consensus 387 ~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~t 462 (653)
T cd01379 387 KKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQAT 462 (653)
T ss_pred CCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999876
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.96 E-value=1.7e-29 Score=190.68 Aligned_cols=76 Identities=45% Similarity=0.808 Sum_probs=73.3
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhhhcC-CCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANHS-SNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~GllslLDee~~~p-~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++ +|.|||++|||||++| +++
T Consensus 380 ~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~t 457 (674)
T cd01378 380 QKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGT 457 (674)
T ss_pred ccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCC
Confidence 579999999999999999999999999999999999999999999999999999999 8999999999999999 654
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.96 E-value=4.5e-29 Score=188.84 Aligned_cols=76 Identities=47% Similarity=0.843 Sum_probs=73.3
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|+.++++|.+|||+|..++| .||++|++||+++|.|||++|||||++|+++
T Consensus 388 ~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~t 464 (693)
T cd01377 388 DFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKAT 464 (693)
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCC
Confidence 579999999999999999999999999999999999999999999 5999999999999999999999999999865
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.95 E-value=7.5e-29 Score=187.60 Aligned_cols=75 Identities=55% Similarity=0.915 Sum_probs=72.2
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++ |.|||++|||||++|+++
T Consensus 382 ~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~t 456 (691)
T cd01380 382 EKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGS 456 (691)
T ss_pred CCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCC
Confidence 579999999999999999999999999999999999999999999999999999996 689999999999999875
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.95 E-value=1.1e-28 Score=186.35 Aligned_cols=76 Identities=55% Similarity=0.981 Sum_probs=73.8
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|++||+++|.||+++|||||++|+++
T Consensus 383 ~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~t 458 (677)
T smart00242 383 EVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKAT 458 (677)
T ss_pred ccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999765
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.95 E-value=3.8e-28 Score=183.48 Aligned_cols=76 Identities=57% Similarity=0.970 Sum_probs=73.6
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|..|||.|..++|.||++|+|+|+++|.||+++|||||++|+++
T Consensus 376 ~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~ 451 (679)
T cd00124 376 EKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGT 451 (679)
T ss_pred CCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCC
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999999765
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.94 E-value=1.1e-27 Score=182.76 Aligned_cols=76 Identities=32% Similarity=0.497 Sum_probs=70.3
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCC--------------Cccccc
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCV 67 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p--------------~Gllsl 67 (83)
+.|||||||||||||+||++|++++|..++++|..|||+|+.+.+ .||.+|+++|+++| .|||++
T Consensus 393 ~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~l 472 (767)
T cd01386 393 RAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWL 472 (767)
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhh
Confidence 369999999999999999999999999999999999999987666 79999999999865 599999
Q ss_pred chhhhhcCCCC
Q psy1325 68 LDDQANHSSNF 78 (83)
Q Consensus 68 LDee~~~p~~~ 78 (83)
|||||++|+++
T Consensus 473 LDEec~~p~~t 483 (767)
T cd01386 473 LDEEALVPGSS 483 (767)
T ss_pred hhHhhcCCCCc
Confidence 99999999865
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.94 E-value=4.4e-27 Score=177.49 Aligned_cols=76 Identities=57% Similarity=0.981 Sum_probs=71.2
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|+||||||||||||||++|++++|..++++|.+|||.|+.++| .||.+|+|||+++|.|||++|||||++|+++
T Consensus 378 ~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~s 454 (689)
T PF00063_consen 378 SVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGS 454 (689)
T ss_dssp SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-
T ss_pred cccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccch
Confidence 579999999999999999999999999999999999999999999 9999999999999999999999999999853
No 17
>KOG0164|consensus
Probab=99.92 E-value=2.6e-26 Score=172.39 Aligned_cols=74 Identities=45% Similarity=0.796 Sum_probs=72.4
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSS 76 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~ 76 (83)
+.|||||||||||||+||+.|++.+++.||+||.+|||.|.+++|.+|.-++||++.+..||++||||||+.|+
T Consensus 389 ~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G 462 (1001)
T KOG0164|consen 389 QDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPG 462 (1001)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999997
No 18
>KOG0161|consensus
Probab=99.92 E-value=6.4e-26 Score=182.83 Aligned_cols=77 Identities=47% Similarity=0.802 Sum_probs=73.5
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhhcCCCCCc
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANHSSNFLT 80 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~GllslLDee~~~p~~~~~ 80 (83)
..||||||||||+||+||++|+++.|..++++|.+|||.|.+|+| .|-++|++||++ |+||+|+|||||++|+++.+
T Consensus 462 e~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~ 539 (1930)
T KOG0161|consen 462 EFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDK 539 (1930)
T ss_pred CcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccc
Confidence 579999999999999999999999999999999999999999999 799999999995 88999999999999998753
No 19
>KOG0163|consensus
Probab=99.91 E-value=7.1e-25 Score=165.73 Aligned_cols=77 Identities=45% Similarity=0.786 Sum_probs=74.5
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNFL 79 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~~ 79 (83)
.+|||||||||||||+||++|++++++.+|+.|..||+.++.|.|.||++|++||+.|..||+.|||||+++|+.+-
T Consensus 465 ~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~ 541 (1259)
T KOG0163|consen 465 AVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSY 541 (1259)
T ss_pred ecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999998763
No 20
>KOG0160|consensus
Probab=99.88 E-value=3.9e-23 Score=158.30 Aligned_cols=76 Identities=55% Similarity=0.876 Sum_probs=73.5
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNFL 79 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~~ 79 (83)
+.|+||||||||+||+||+.|.+|+|+.++++|..|+|+|..++|.||++|+++|+. |.|++++|||+|++|+++.
T Consensus 382 ~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~ 457 (862)
T KOG0160|consen 382 EVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTD 457 (862)
T ss_pred ccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCc
Confidence 679999999999999999999999999999999999999999999999999999997 8999999999999998764
No 21
>KOG0162|consensus
Probab=99.84 E-value=6.6e-22 Score=149.31 Aligned_cols=75 Identities=39% Similarity=0.744 Sum_probs=70.7
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhhhcCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANHSSN 77 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~GllslLDee~~~p~~ 77 (83)
+.|||||+||||.||+||+.|++.+++.||++|.+|||.|.+|.|.||.-++|||+. +|.|||++|||.|...-+
T Consensus 397 e~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha 472 (1106)
T KOG0162|consen 397 ENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHA 472 (1106)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhcc
Confidence 579999999999999999999999999999999999999999999999999999997 688999999999986543
No 22
>KOG4229|consensus
Probab=99.83 E-value=1.9e-21 Score=151.61 Aligned_cols=78 Identities=53% Similarity=0.917 Sum_probs=75.1
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCCCc
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNFLT 80 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~~~ 80 (83)
+.|+|||+|||+|||++|.+|.+++|..++++|..|+|.|..+.|.||..|+++|..+|+|||.+||||+.||+++.+
T Consensus 441 ~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~ 518 (1062)
T KOG4229|consen 441 ERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQ 518 (1062)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHH
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998753
No 23
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=35.71 E-value=14 Score=23.97 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcCCcc
Q psy1325 14 YANEHLQYYFNQHVFQYEQEEYNKEGIRW 42 (83)
Q Consensus 14 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~~ 42 (83)
-|.+.||.+|-.+-|....++|.+.||+-
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIpH 145 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIPH 145 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCCc
Confidence 47889999999999999999999999953
No 24
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=27.38 E-value=1.6e+02 Score=18.36 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-cCCccccccc-CChHHHHHHHhc----CCCcccccchhh
Q psy1325 17 EHLQYYFNQHVFQYEQEEYNK-EGIRWRHIEF-SDNTLCLQLVEG----KPNGLLCVLDDQ 71 (83)
Q Consensus 17 E~l~~~~~~~~f~~~~~~y~~-Egi~~~~~~~-~dn~~~l~li~~----~p~GllslLDee 71 (83)
|+++.-|...||..-.+.... -......+.+ .+.++|+..|+. +..|--|+.+|.
T Consensus 9 ~kI~k~Y~~~I~~~L~~ymngtkst~FN~~~~C~~r~~CLtkIe~~Tfnp~~gC~SLa~e~ 69 (124)
T PF15216_consen 9 EKIQKIYENIIFHDLLKYMNGTKSTEFNNTVYCEDRPDCLTKIERLTFNPTPGCPSLAKET 69 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCccccCCchhHHHHHHHHhcCCCCCchhHHHHH
Confidence 678888888888654333322 2344555555 577889888776 446888877775
No 25
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=24.93 E-value=64 Score=15.39 Aligned_cols=16 Identities=25% Similarity=0.357 Sum_probs=10.6
Q ss_pred CchhhHHHhhhhHHHHH
Q psy1325 5 FSFEQLCINYANEHLQY 21 (83)
Q Consensus 5 N~feqlciN~~nE~l~~ 21 (83)
...-|+|.+|. ++|..
T Consensus 20 ~d~~~f~~~yF-~kL~~ 35 (38)
T smart00394 20 SDLVQFAADYF-EKLEE 35 (38)
T ss_pred CcHHHHHHHHH-HHHHH
Confidence 44567888887 66654
No 26
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=23.13 E-value=33 Score=22.90 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=34.1
Q ss_pred hhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCC
Q psy1325 35 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSN 77 (83)
Q Consensus 35 y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~ 77 (83)
+..+||.....+|.++.-++.+++. ..|+++.+---++.+++
T Consensus 4 ~~~~giVL~~~~~~E~d~iv~l~T~-~~G~i~~~a~g~rk~ks 45 (247)
T PRK00085 4 YRDEGIVLHTRPYGETSLIVTLFTR-EHGRVRAVAKGARRPKS 45 (247)
T ss_pred ccccEEEEecCCCcccchhhhcccc-ccCcEEEEEecCCCCcC
Confidence 5677888777888899999999995 57999998887777663
Done!