Query psy1325
Match_columns 83
No_of_seqs 115 out of 1026
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 23:56:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 1.5E-31 5E-36 203.3 7.1 76 3-78 460-535 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 1.6E-31 5.4E-36 201.1 6.6 76 3-78 394-469 (697)
3 4anj_A Unconventional myosin-V 100.0 7.2E-31 2.5E-35 203.7 7.1 76 3-78 464-539 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 1.4E-30 4.9E-35 198.0 7.7 75 3-78 445-519 (795)
5 1w9i_A Myosin II heavy chain; 100.0 2.3E-30 8E-35 196.3 7.5 76 3-78 462-539 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 2.6E-30 8.8E-35 196.3 6.7 75 3-78 469-544 (783)
7 1kk8_A Myosin heavy chain, str 100.0 3.7E-30 1.3E-34 196.6 6.5 75 3-78 468-543 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 1E-29 3.5E-34 197.9 7.4 75 3-78 445-519 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 1.3E-29 4.3E-34 196.2 7.1 76 3-78 441-519 (995)
10 1g8x_A Myosin II heavy chain f 100.0 2.4E-29 8.1E-34 194.9 7.8 76 3-78 462-539 (1010)
11 1i84_S Smooth muscle myosin he 100.0 4.4E-29 1.5E-33 195.2 6.3 76 3-78 472-550 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 60.2 2.7 9.2E-05 21.8 0.6 27 49-75 25-51 (53)
13 1mof_A Moloney murine leukemia 54.7 3.4 0.00012 21.5 0.5 27 49-75 27-53 (55)
14 4g2k_A General control protein 25.6 30 0.001 20.7 1.4 29 49-77 78-106 (125)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.97 E-value=1.5e-31 Score=203.26 Aligned_cols=76 Identities=39% Similarity=0.723 Sum_probs=74.1
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..||++|.+|||+|..++|.||++|+|||+++|+|||+||||||++|+++
T Consensus 460 ~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~t 535 (784)
T 2v26_A 460 EHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPS 535 (784)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.97 E-value=1.6e-31 Score=201.14 Aligned_cols=76 Identities=42% Similarity=0.677 Sum_probs=74.0
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|+.||++|.+|||+|..++|.||++|+|||+++|+|||+||||||++|+++
T Consensus 394 ~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~t 469 (697)
T 1lkx_A 394 QNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKST 469 (697)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCC
T ss_pred CcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999865
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.96 E-value=7.2e-31 Score=203.74 Aligned_cols=76 Identities=39% Similarity=0.723 Sum_probs=74.2
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|+|||+||||||++|+++
T Consensus 464 ~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~t 539 (1052)
T 4anj_A 464 EHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPS 539 (1052)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCC
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.96 E-value=1.4e-30 Score=198.04 Aligned_cols=75 Identities=52% Similarity=0.837 Sum_probs=72.7
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..||++|.+|||+|..++|.||++|+|||++| +|||+||||||++|+++
T Consensus 445 ~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~t 519 (795)
T 1w7j_A 445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGS 519 (795)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCC
T ss_pred CcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999986 99999999999999875
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.96 E-value=2.3e-30 Score=196.26 Aligned_cols=76 Identities=49% Similarity=0.891 Sum_probs=72.7
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcC-CCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~-p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..||++|.+|||+|..++| .||++|+|||+++ |+|||+||||||++|+++
T Consensus 462 ~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~t 539 (770)
T 1w9i_A 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 539 (770)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCC
T ss_pred ccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCC
Confidence 579999999999999999999999999999999999999999999 5999999999984 999999999999999865
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.96 E-value=2.6e-30 Score=196.34 Aligned_cols=75 Identities=47% Similarity=0.894 Sum_probs=70.9
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++| .||++|+|||++ |+|||+||||||++|+++
T Consensus 469 ~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~t 544 (783)
T 4db1_A 469 DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKAT 544 (783)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCC
Confidence 579999999999999999999999999999999999999999999 599999999995 899999999999999865
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.96 E-value=3.7e-30 Score=196.55 Aligned_cols=75 Identities=49% Similarity=0.915 Sum_probs=72.1
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..||+||.+|||+|..++| .||++|+|||++ |+|||+||||||++|+++
T Consensus 468 ~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~t 543 (837)
T 1kk8_A 468 DFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKAD 543 (837)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCC
T ss_pred ccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCC
Confidence 579999999999999999999999999999999999999999999 599999999996 899999999999999865
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.96 E-value=1e-29 Score=197.86 Aligned_cols=75 Identities=52% Similarity=0.837 Sum_probs=72.6
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|..|||+|..++|.||++|+|||+++ +|||+||||||++|+++
T Consensus 445 ~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~t 519 (1080)
T 2dfs_A 445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGS 519 (1080)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCC
T ss_pred CcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999986 89999999999999875
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.96 E-value=1.3e-29 Score=196.20 Aligned_cols=76 Identities=47% Similarity=0.846 Sum_probs=72.8
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhc--CCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~--~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|..++| .||++|+|||++ +|+|||+||||||++|+++
T Consensus 441 ~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~t 519 (995)
T 2ycu_A 441 QLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKAT 519 (995)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCC
T ss_pred ccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCc
Confidence 579999999999999999999999999999999999999999999 699999999998 4899999999999999865
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.96 E-value=2.4e-29 Score=194.90 Aligned_cols=76 Identities=49% Similarity=0.881 Sum_probs=72.8
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhc-CCCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~-~p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|.+|||+|..++| .||++|+|||++ +|+|||+||||||++|+++
T Consensus 462 ~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~t 539 (1010)
T 1g8x_A 462 KVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 539 (1010)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCC
T ss_pred CcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCC
Confidence 579999999999999999999999999999999999999999999 599999999998 4999999999999999865
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.95 E-value=4.4e-29 Score=195.23 Aligned_cols=76 Identities=47% Similarity=0.845 Sum_probs=71.3
Q ss_pred CCCchhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcC--CCcccccchhhhhcCCCC
Q psy1325 3 SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQANHSSNF 78 (83)
Q Consensus 3 ~~N~feqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~--p~GllslLDee~~~p~~~ 78 (83)
+.|||||||||||||+||++|++++|..++++|..|||+|.+++| .||++|+|||+++ |+|||+||||||++|+++
T Consensus 472 ~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~t 550 (1184)
T 1i84_S 472 EINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKAT 550 (1184)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCC
Confidence 579999999999999999999999999999999999999999999 6999999999962 349999999999999865
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=60.16 E-value=2.7 Score=21.75 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.4
Q ss_pred ChHHHHHHHhcCCCcccccchhhhhcC
Q psy1325 49 DNTLCLQLVEGKPNGLLCVLDDQANHS 75 (83)
Q Consensus 49 dn~~~l~li~~~p~GllslLDee~~~p 75 (83)
.|.-.+|++..+..|+=..|.|+|.|-
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~y 51 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCFW 51 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhcc
Confidence 577889999988899999999999873
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=54.73 E-value=3.4 Score=21.50 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.5
Q ss_pred ChHHHHHHHhcCCCcccccchhhhhcC
Q psy1325 49 DNTLCLQLVEGKPNGLLCVLDDQANHS 75 (83)
Q Consensus 49 dn~~~l~li~~~p~GllslLDee~~~p 75 (83)
.|.-.+|++..+..|+=..|.|+|.|-
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCfy 53 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAFY 53 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhcc
Confidence 578889999988899999999999873
No 14
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=25.56 E-value=30 Score=20.72 Aligned_cols=29 Identities=14% Similarity=0.089 Sum_probs=24.4
Q ss_pred ChHHHHHHHhcCCCcccccchhhhhcCCC
Q psy1325 49 DNTLCLQLVEGKPNGLLCVLDDQANHSSN 77 (83)
Q Consensus 49 dn~~~l~li~~~p~GllslLDee~~~p~~ 77 (83)
-|...+|++.-...|+=..+.++|.|--+
T Consensus 78 QNRraLD~Lla~qGG~C~~l~e~CCfyin 106 (125)
T 4g2k_A 78 INRHAIDFLLTRWGGTCKVLGPDCSIGIE 106 (125)
T ss_dssp HHHHHHHHHHGGGTCHHHHHCGGGGCCCC
T ss_pred HHHHHHHHHHHHcCCcHHHhcccceeecc
Confidence 46778898888889999999999998643
Done!