RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1325
         (83 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 70.9 bits (173), Expect = 9e-17
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query: 3   SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 62
              SFEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP 
Sbjct: 386 QNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPI 445

Query: 63  GLLCVLDDQ 71
           GL+ +LD+ 
Sbjct: 446 GLISLLDEA 454


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 69.4 bits (169), Expect = 3e-16
 Identities = 32/74 (43%), Positives = 44/74 (59%)

Query: 1   MKSKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 60
           +    SFEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  K
Sbjct: 420 IFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEK 479

Query: 61  PNGLLCVLDDQANH 74
           P G+  +L+++   
Sbjct: 480 PMGIFSILEEECMF 493


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 65.9 bits (160), Expect = 5e-15
 Identities = 34/70 (48%), Positives = 44/70 (62%)

Query: 2   KSKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 61
               SFEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP
Sbjct: 419 FDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKP 478

Query: 62  NGLLCVLDDQ 71
            G+L +L+++
Sbjct: 479 MGILSILEEE 488


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 65.5 bits (159), Expect = 7e-15
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 1   MKSKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG 59
           +    SFEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E 
Sbjct: 392 IFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIER 451

Query: 60  --KPNGLLCVLDDQAN 73
              P G+L +LD++  
Sbjct: 452 PTNPPGVLALLDEECW 467


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 64.0 bits (155), Expect = 2e-14
 Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 1   MKSKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 60
                SFEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K
Sbjct: 381 TFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK 440

Query: 61  PNGLLCVLDDQ 71
             G+L +LD++
Sbjct: 441 -MGVLDLLDEE 450


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 61.2 bits (148), Expect = 2e-13
 Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 3   SKFSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-K 60
              SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +
Sbjct: 415 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 474

Query: 61  PNGLLCVLDDQ 71
           P G+L +LD+Q
Sbjct: 475 PPGILALLDEQ 485


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 24.9 bits (54), Expect = 1.3
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 12  INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 50
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanosarcina barkeri [TaxId: 2208]}
          Length = 247

 Score = 22.8 bits (49), Expect = 5.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 37 KEGIRWRHIEFSD 49
            G R R+I+F+D
Sbjct: 77 AAGDRVRYIQFAD 89


>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanobacterium thermoautotrophicum [TaxId:
          145262]}
          Length = 247

 Score = 22.8 bits (49), Expect = 6.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 37 KEGIRWRHIEFSD 49
          K G R R+I+F+D
Sbjct: 76 KAGDRVRYIQFTD 88


>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanopyrus kandleri [TaxId: 2320]}
          Length = 248

 Score = 22.8 bits (49), Expect = 6.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 37 KEGIRWRHIEFSD 49
          K G R R+I+F+D
Sbjct: 75 KAGDRIRYIQFTD 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 304,053
Number of extensions: 11931
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 16
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)