BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13251
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E07|A Chain A, Crystal Structure Of Spatzle Cystine Knot
 pdb|3E07|B Chain B, Crystal Structure Of Spatzle Cystine Knot
          Length = 114

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 73  LCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTE--CNGVCGLPPGY 130
           LC +  + V P+  +     W  +VN +E    YKQ ++ E C   +  C+     P  Y
Sbjct: 9   LCRSIRKLVYPKKGLRADDTWQLIVNNDE----YKQAIQIEECEGADQPCDFAANFPQSY 64

Query: 131 TSRCEQKYVQKRLIALQGEGN-QLYTDVFWIPSCC 164
              C+Q Y Q+ L +++ +G   +  + F IPSCC
Sbjct: 65  NPICKQHYTQQTLASIKSDGELDVVQNSFKIPSCC 99


>pdb|2J88|L Chain L, Hyaluronidase In Complex With A Monoclonal Igg Fab
           Fragment
          Length = 213

 Score = 27.3 bits (59), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 1   MPVSDLQEFPYPARRFPLHYGTDAVAPSARFELYPALTAPPVSYYDP 47
           + +S LQ   +       HYGT       R E+  A  AP VS + P
Sbjct: 73  LKISSLQPEDFGNYYCQHHYGTRTFGGGTRLEIKRADAAPTVSIFPP 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,376,637
Number of Sequences: 62578
Number of extensions: 203077
Number of successful extensions: 433
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 3
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)