BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13251
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48607|SPZ_DROME Protein spaetzle OS=Drosophila melanogaster GN=spz PE=1 SV=3
Length = 326
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 58 ADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLS 117
D R S F LC + + V P+ + W +VN +E YKQ ++ E C
Sbjct: 215 TDVSSRVGGSDERF-LCRSIRKLVYPKKGLRADDTWQLIVNNDE----YKQAIQIEECEG 269
Query: 118 TE--CNGVCGLPPGYTSRCEQKYVQKRLIALQGEGN-QLYTDVFWIPSCC 164
+ C+ P Y C+Q Y Q+ L +++ +G + + F IPSCC
Sbjct: 270 ADQPCDFAANFPQSYNPICKQHYTQQTLASIKSDGELDVVQNSFKIPSCC 319
>sp|Q3HXY6|NGFV2_NOTSC Venom nerve growth factor 2 OS=Notechis scutatus scutatus PE=2 SV=1
Length = 244
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 58 ADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYV-VNINEVDNRYKQLVKSEVCL 116
A RE + ++C + S +V+ A + +GN + V V+IN + YKQ C
Sbjct: 123 AKRENHPVHNQGEHSVCDSVSDWVIKTTATDIRGNMVTVMVDINRNNEVYKQYFFETKCR 182
Query: 117 STECNGVCGLPPGYTSRCEQKY---VQKRLIALQGEGNQLYTDVFWIPSCCM 165
+ N V G SR Y Q + AL EGNQ I + C+
Sbjct: 183 NPNPNPVQSERRGIDSRLWNSYCTTTQTFVRALTMEGNQASWRFIRIDTACV 234
>sp|Q3HXY7|NGFV1_NOTSC Venom nerve growth factor 1 OS=Notechis scutatus scutatus PE=2 SV=1
Length = 244
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 58 ADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYV-VNINEVDNRYKQLVKSEVCL 116
A RE + ++C + S +V+ A + +GN + V V+IN + YKQ C
Sbjct: 123 AKRENHPVHNQGEHSVCDSVSDWVIKTTATDIRGNMVTVMVDINRNNEVYKQYFFETKCR 182
Query: 117 STECNGVCGLPPGYTSRCEQKY---VQKRLIALQGEGNQLYTDVFWIPSCCM 165
+ N V G SR Y Q + AL EGNQ I + C+
Sbjct: 183 NPNPNPVQSECRGIDSRLWNSYCTTTQTFVRALTMEGNQASWRFIRIDTACV 234
>sp|Q97U21|GLCD3_SULSO Glucose 1-dehydrogenase 3 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=gdh3 PE=3 SV=1
Length = 360
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 82 MPQAAVN--NKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTS 132
M VN NKG V++ E+++ ++ L EV + T NG+CG G S
Sbjct: 1 MKAIVVNPPNKG-----VHVKEINDIHRSLTADEVLVKTIANGICGTDRGIVS 48
>sp|Q3HXY5|NGFV3_NOTSC Venom nerve growth factor 3 OS=Notechis scutatus scutatus PE=2 SV=1
Length = 244
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 58 ADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYV-VNINEVDNRYKQLVKSEVCL 116
A RE + ++C + S +V+ A + +GN + V V+IN + YKQ C
Sbjct: 123 AKRENHPVHNQGEHSVCDSVSDWVIKTTATDIRGNMVTVMVDINRDNEVYKQYFFETKCR 182
Query: 117 STECNGVCGLPPGYTSRCEQKY---VQKRLIALQGEGNQLYTDVFWIPSCCM 165
+ N V G SR Y + + AL EGNQ I + C+
Sbjct: 183 NPNPNPVQSECRGIDSRLWNSYCTTTRTFVRALTMEGNQASWRFIRIDTACV 234
>sp|Q3HXX5|NGFV4_TROCA Venom nerve growth factor 4 OS=Tropidechis carinatus PE=2 SV=1
Length = 244
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 42 VSYYDPGYWWKRYRRNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVV-NIN 100
V + D R R A RE + ++C + S +V+ A + +GN + V+ +IN
Sbjct: 108 VEFLDNEDTLNRNIR-AKRENHPVHNQGEHSVCDSVSDWVIKTTATDIRGNVVTVMEDIN 166
Query: 101 EVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKY---VQKRLIALQGEGNQLYTDV 157
+ YKQ C + N V G SR Y Q + AL EGNQ
Sbjct: 167 LNNEVYKQYFFETKCRNPNPNPVQSECRGIDSRLWNSYCTTTQTFVRALTMEGNQASWRF 226
Query: 158 FWIPSCCM 165
I + C+
Sbjct: 227 IRIDTACV 234
>sp|Q3HXX7|NGFV2_TROCA Venom nerve growth factor 2 OS=Tropidechis carinatus PE=2 SV=1
Length = 244
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 58 ADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVV-NINEVDNRYKQLVKSEVCL 116
A RE + ++C + S +V+ A + +GN + V+ +IN + YKQ C
Sbjct: 123 AKRENHPVHNQGEHSVCDSVSDWVIKTTATDIRGNVVTVMEDINLNNEVYKQYFFETKCR 182
Query: 117 STECNGVCGLPPGYTSRCEQKY---VQKRLIALQGEGNQLYTDVFWIPSCCM 165
+ N V G SR Y Q + AL EGNQ I + C+
Sbjct: 183 NPSPNPVQSECRGIDSRLWNSYCTTTQTFVRALTMEGNQASWRFIRIDTACV 234
>sp|Q04A23|SYGB_LACDB Glycine--tRNA ligase beta subunit OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC BAA-365) GN=glyS PE=3
SV=1
Length = 688
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 77 RSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQ 136
R Q+V+ A ++ M V IN++ N + +K + L E N + P + +Q
Sbjct: 207 RDQYVIVDA---DERKAMIVSQINDLVNSHNWQIKLDASLLEEVNNLVEYPTVFAGSFDQ 263
Query: 137 KYVQ--KRLIALQGEGNQLYTDVF 158
KY++ ++ + NQ Y +V+
Sbjct: 264 KYLEIPDEVLITSMKDNQRYFEVY 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,313,354
Number of Sequences: 539616
Number of extensions: 2579038
Number of successful extensions: 4960
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4955
Number of HSP's gapped (non-prelim): 13
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)