RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13251
         (166 letters)



>gnl|CDD|179560 PRK03333, coaE, dephospho-CoA kinase/protein folding accessory
           domain-containing protein; Provisional.
          Length = 395

 Score = 27.7 bits (62), Expect = 3.1
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 23  DAVAP---SARFELYPALTA--PPVSYYDPGYWWKRYRRNAD 59
           D +A    +A F   P +T   P     DP  W KR   +AD
Sbjct: 273 DELAEPLAAAGFPRLPGITQDTPKPDDPDPALWGKRLHASAD 314


>gnl|CDD|224777 COG1864, NUC1, DNA/RNA endonuclease G, NUC1 [Nucleotide transport
           and metabolism].
          Length = 281

 Score = 27.0 bits (60), Expect = 4.5
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 25/128 (19%)

Query: 51  WKRYRRNA-DREKRQSSSTSTFTLCPTRSQFVM----PQAAVNNKGNWMYVVNINEVDNR 105
              Y+ +  DR      +   F +      F M    PQAA  N+  W       E+++ 
Sbjct: 113 LSDYKGSGYDRGHMVPPADGDFAIQANNDTFYMTNMTPQAADLNRKIW------LELEDY 166

Query: 106 YKQLVK---SEVCLSTECN----GVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDV- 157
            + L +   S V + T                          K ++ L+ +GN     + 
Sbjct: 167 CRNLARKYGSVVIVFTGPYFRKDDTFIEKNKVAV---PSEFWKVVVTLKKDGNDSAAYLR 223

Query: 158 ---FWIPS 162
              F+IP+
Sbjct: 224 VQAFYIPN 231


>gnl|CDD|183212 PRK11579, PRK11579, putative oxidoreductase; Provisional.
          Length = 346

 Score = 27.0 bits (60), Expect = 4.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 11  YPARRFPLHYGTDAVAPSARFELY 34
           YP RR  LH    A A SAR+ ++
Sbjct: 218 YPQRRVVLHGTMLAAAESARYIVH 241


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.135    0.442 

Gapped
Lambda     K      H
   0.267   0.0759    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,258,940
Number of extensions: 690728
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 7
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)